Query 043181
Match_columns 348
No_of_seqs 200 out of 2807
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 13:41:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 8.2E-55 1.8E-59 429.0 20.1 336 1-345 187-634 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.1E-36 2.3E-41 314.5 23.5 261 65-347 350-699 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.2E-29 2.6E-34 225.8 6.3 176 1-177 27-285 (287)
4 KOG0617 Ras suppressor protein 98.8 8.8E-10 1.9E-14 86.7 0.0 72 274-347 119-190 (264)
5 PRK04841 transcriptional regul 98.5 3.6E-06 7.8E-11 86.9 16.3 135 65-223 185-331 (903)
6 KOG0617 Ras suppressor protein 98.5 3.9E-08 8.5E-13 77.5 0.4 72 274-347 94-167 (264)
7 PF13855 LRR_8: Leucine rich r 98.4 1.8E-07 3.9E-12 62.2 2.8 57 282-339 1-59 (61)
8 PLN03150 hypothetical protein; 98.3 1.2E-06 2.5E-11 86.1 5.6 75 273-347 433-508 (623)
9 KOG0472 Leucine-rich repeat pr 98.2 7.4E-07 1.6E-11 79.3 3.0 72 273-347 449-544 (565)
10 PF12799 LRR_4: Leucine Rich r 98.2 1.1E-06 2.3E-11 53.9 2.7 39 283-322 2-40 (44)
11 PF12799 LRR_4: Leucine Rich r 98.2 2E-06 4.4E-11 52.7 3.1 42 305-348 1-42 (44)
12 PLN00113 leucine-rich repeat r 98.1 2.5E-06 5.4E-11 88.7 5.4 74 273-346 179-253 (968)
13 PLN03210 Resistant to P. syrin 98.1 4.5E-06 9.7E-11 87.9 7.2 73 273-347 649-722 (1153)
14 KOG4658 Apoptotic ATPase [Sign 98.1 1.5E-06 3.2E-11 87.7 2.3 104 230-339 539-652 (889)
15 KOG0444 Cytoskeletal regulator 98.0 8.4E-07 1.8E-11 83.3 -0.4 66 273-339 117-183 (1255)
16 PLN00113 leucine-rich repeat r 98.0 1E-05 2.2E-10 84.3 7.2 75 273-347 514-589 (968)
17 KOG0472 Leucine-rich repeat pr 97.9 1.7E-06 3.7E-11 77.1 -0.2 68 273-343 242-310 (565)
18 KOG0444 Cytoskeletal regulator 97.9 1.6E-06 3.4E-11 81.5 -0.5 66 273-339 236-301 (1255)
19 COG2909 MalT ATP-dependent tra 97.9 0.00029 6.4E-09 68.9 14.6 195 1-222 45-336 (894)
20 PRK09376 rho transcription ter 97.7 2.7E-05 5.8E-10 70.5 3.9 44 1-45 177-222 (416)
21 PLN03150 hypothetical protein; 97.7 7.1E-05 1.5E-09 73.7 5.9 74 273-346 457-532 (623)
22 PF14580 LRR_9: Leucine-rich r 97.6 6.3E-05 1.4E-09 61.1 4.2 63 277-340 59-124 (175)
23 PRK00080 ruvB Holliday junctio 97.6 0.0022 4.7E-08 58.2 14.7 122 65-203 179-310 (328)
24 cd01128 rho_factor Transcripti 97.6 7.9E-05 1.7E-09 64.3 4.9 45 1-46 24-70 (249)
25 TIGR03015 pepcterm_ATPase puta 97.6 0.00066 1.4E-08 59.7 10.9 52 65-116 191-242 (269)
26 TIGR00635 ruvB Holliday juncti 97.5 0.0019 4.1E-08 57.9 12.8 123 64-203 157-289 (305)
27 KOG0532 Leucine-rich repeat (L 97.5 1.8E-05 3.9E-10 73.7 -0.6 71 273-346 135-205 (722)
28 KOG0618 Serine/threonine phosp 97.5 3.4E-05 7.4E-10 75.7 1.2 72 274-347 375-447 (1081)
29 PF14580 LRR_9: Leucine-rich r 97.5 8.5E-05 1.8E-09 60.4 2.9 56 280-336 86-147 (175)
30 PF13855 LRR_8: Leucine rich r 97.4 0.00019 4.2E-09 47.5 3.6 41 275-315 18-59 (61)
31 KOG0532 Leucine-rich repeat (L 97.3 5.1E-05 1.1E-09 70.8 -0.3 69 273-344 180-248 (722)
32 KOG0618 Serine/threonine phosp 97.2 7E-05 1.5E-09 73.6 -0.2 71 274-346 60-130 (1081)
33 KOG4579 Leucine-rich repeat (L 97.2 0.00011 2.4E-09 56.2 0.6 60 279-339 50-110 (177)
34 PRK15370 E3 ubiquitin-protein 97.1 0.00067 1.5E-08 67.7 5.5 58 283-346 242-299 (754)
35 PRK15386 type III secretion pr 96.9 0.00073 1.6E-08 62.0 3.6 60 282-346 52-111 (426)
36 COG4886 Leucine-rich repeat (L 96.9 0.00049 1.1E-08 64.1 2.3 73 273-347 130-203 (394)
37 PRK00411 cdc6 cell division co 96.9 0.038 8.2E-07 51.5 14.8 134 65-203 206-358 (394)
38 PRK15370 E3 ubiquitin-protein 96.9 0.001 2.2E-08 66.6 4.2 58 283-346 347-404 (754)
39 PRK08118 topology modulation p 96.8 0.0005 1.1E-08 55.8 1.2 28 1-28 9-37 (167)
40 KOG1259 Nischarin, modulator o 96.7 0.00063 1.4E-08 58.9 0.9 59 279-339 281-339 (490)
41 PF00560 LRR_1: Leucine Rich R 96.6 0.00078 1.7E-08 34.4 0.8 20 284-303 2-21 (22)
42 PF05496 RuvB_N: Holliday junc 96.6 0.0013 2.8E-08 55.1 2.4 40 65-108 178-217 (233)
43 TIGR00767 rho transcription te 96.6 0.0027 5.8E-08 58.1 4.4 45 2-47 177-223 (415)
44 KOG3665 ZYG-1-like serine/thre 96.6 0.0014 3E-08 64.9 2.8 79 260-340 143-231 (699)
45 KOG1259 Nischarin, modulator o 96.5 0.00051 1.1E-08 59.5 -0.6 63 281-346 351-415 (490)
46 COG3903 Predicted ATPase [Gene 96.2 0.028 6E-07 51.2 8.5 144 69-221 145-311 (414)
47 PF00560 LRR_1: Leucine Rich R 96.1 0.0019 4.2E-08 32.9 0.5 22 306-328 1-22 (22)
48 PRK15387 E3 ubiquitin-protein 96.1 0.0079 1.7E-07 60.2 5.2 18 282-299 302-319 (788)
49 cd00116 LRR_RI Leucine-rich re 96.1 0.0055 1.2E-07 55.1 3.8 62 277-339 188-260 (319)
50 KOG4194 Membrane glycoprotein 96.1 0.0019 4.1E-08 61.0 0.6 50 273-323 308-358 (873)
51 PRK15387 E3 ubiquitin-protein 96.1 0.0033 7.2E-08 62.8 2.2 58 282-343 402-459 (788)
52 COG4886 Leucine-rich repeat (L 96.0 0.0038 8.3E-08 58.1 2.2 69 277-347 111-180 (394)
53 PF13401 AAA_22: AAA domain; P 95.9 0.0093 2E-07 45.9 3.8 53 2-54 13-68 (131)
54 cd00116 LRR_RI Leucine-rich re 95.8 0.0066 1.4E-07 54.5 3.0 66 275-340 158-232 (319)
55 KOG4579 Leucine-rich repeat (L 95.8 0.0015 3.3E-08 50.1 -0.9 55 284-339 79-133 (177)
56 PRK15386 type III secretion pr 95.8 0.0063 1.4E-07 56.0 2.5 11 306-316 157-167 (426)
57 KOG4237 Extracellular matrix p 95.7 0.0014 3E-08 58.9 -1.9 65 274-338 83-149 (498)
58 PRK06893 DNA replication initi 95.5 0.069 1.5E-06 45.7 8.0 41 65-109 160-200 (229)
59 KOG4194 Membrane glycoprotein 95.4 0.021 4.6E-07 54.2 4.5 61 278-339 169-231 (873)
60 KOG0531 Protein phosphatase 1, 95.3 0.0084 1.8E-07 56.3 1.8 64 278-345 114-177 (414)
61 PRK11331 5-methylcytosine-spec 95.3 0.017 3.7E-07 53.8 3.7 41 1-41 202-242 (459)
62 KOG4237 Extracellular matrix p 94.9 0.012 2.5E-07 53.2 1.4 65 277-343 269-335 (498)
63 COG2256 MGS1 ATPase related to 94.9 0.069 1.5E-06 48.5 6.0 20 2-23 57-76 (436)
64 PRK07261 topology modulation p 94.8 0.047 1E-06 44.4 4.5 29 1-29 8-37 (171)
65 PF13504 LRR_7: Leucine rich r 94.7 0.02 4.3E-07 27.0 1.2 16 283-298 2-17 (17)
66 KOG2739 Leucine-rich acidic nu 94.5 0.026 5.6E-07 48.1 2.4 38 278-316 87-127 (260)
67 COG2255 RuvB Holliday junction 94.5 0.31 6.7E-06 42.4 8.8 28 92-119 263-290 (332)
68 PRK13342 recombination factor 94.5 0.16 3.4E-06 47.7 7.9 44 65-111 150-195 (413)
69 COG1618 Predicted nucleotide k 94.4 0.035 7.7E-07 43.9 2.8 28 1-30 13-41 (179)
70 PF13207 AAA_17: AAA domain; P 94.4 0.023 4.9E-07 43.1 1.7 16 1-16 7-22 (121)
71 PF05621 TniB: Bacterial TniB 94.2 0.34 7.4E-06 42.8 8.8 54 2-57 70-129 (302)
72 KOG1859 Leucine-rich repeat pr 94.2 0.013 2.8E-07 57.0 -0.1 61 277-339 204-264 (1096)
73 KOG0531 Protein phosphatase 1, 94.1 0.018 3.8E-07 54.1 0.7 61 277-339 135-196 (414)
74 KOG1859 Leucine-rich repeat pr 94.0 0.0082 1.8E-07 58.3 -1.7 62 275-339 180-242 (1096)
75 COG1222 RPT1 ATP-dependent 26S 93.8 0.27 5.8E-06 44.2 7.4 15 2-16 194-208 (406)
76 PRK05541 adenylylsulfate kinas 93.8 0.058 1.3E-06 44.0 3.1 27 1-29 15-41 (176)
77 TIGR02928 orc1/cdc6 family rep 93.6 0.11 2.3E-06 47.9 4.9 47 1-49 48-100 (365)
78 PF13238 AAA_18: AAA domain; P 93.5 0.041 8.8E-07 42.0 1.7 16 1-16 6-21 (129)
79 PF01583 APS_kinase: Adenylyls 93.2 0.088 1.9E-06 41.9 3.1 27 1-29 10-36 (156)
80 smart00370 LRR Leucine-rich re 93.2 0.085 1.9E-06 27.8 2.1 21 281-301 1-21 (26)
81 smart00369 LRR_TYP Leucine-ric 93.2 0.085 1.9E-06 27.8 2.1 21 281-301 1-21 (26)
82 PF05729 NACHT: NACHT domain 93.2 0.1 2.2E-06 41.7 3.5 33 2-34 9-45 (166)
83 KOG0730 AAA+-type ATPase [Post 93.0 0.2 4.3E-06 48.4 5.5 15 2-16 477-491 (693)
84 cd00009 AAA The AAA+ (ATPases 92.8 0.14 3E-06 39.6 3.8 31 2-34 28-58 (151)
85 PRK08727 hypothetical protein; 92.8 0.38 8.2E-06 41.3 6.7 29 2-32 50-78 (233)
86 cd01133 F1-ATPase_beta F1 ATP 92.7 0.14 3.1E-06 44.7 4.0 43 2-46 78-122 (274)
87 PF13191 AAA_16: AAA ATPase do 92.7 0.16 3.5E-06 41.5 4.2 19 2-20 33-51 (185)
88 PF08303 tRNA_lig_kinase: tRNA 92.3 0.15 3.2E-06 40.6 3.3 38 2-48 8-50 (168)
89 PF07726 AAA_3: ATPase family 92.2 0.043 9.4E-07 41.8 0.2 20 2-23 8-27 (131)
90 COG0003 ArsA Predicted ATPase 92.0 0.19 4.1E-06 45.2 3.9 37 1-39 10-46 (322)
91 PF13173 AAA_14: AAA domain 91.9 0.13 2.9E-06 39.4 2.6 31 2-35 11-41 (128)
92 PTZ00301 uridine kinase; Provi 91.8 0.16 3.4E-06 42.8 3.0 20 2-23 12-31 (210)
93 COG1192 Soj ATPases involved i 91.8 0.18 4E-06 43.9 3.6 30 2-33 12-42 (259)
94 TIGR02237 recomb_radB DNA repa 91.7 0.29 6.2E-06 41.1 4.6 38 2-42 21-58 (209)
95 PRK08084 DNA replication initi 91.6 1 2.3E-05 38.6 8.1 15 2-16 54-68 (235)
96 KOG3207 Beta-tubulin folding c 91.6 0.031 6.7E-07 51.1 -1.5 66 279-346 243-317 (505)
97 KOG3207 Beta-tubulin folding c 91.5 0.13 2.9E-06 47.2 2.5 63 276-339 265-336 (505)
98 PF01656 CbiA: CobQ/CobB/MinD/ 91.5 0.23 5E-06 41.0 3.8 31 1-33 7-37 (195)
99 smart00382 AAA ATPases associa 91.4 0.16 3.6E-06 38.8 2.6 30 2-33 11-40 (148)
100 PF02374 ArsA_ATPase: Anion-tr 91.4 0.22 4.7E-06 44.6 3.7 29 2-32 10-38 (305)
101 PRK03839 putative kinase; Prov 91.3 0.11 2.4E-06 42.5 1.6 16 1-16 8-23 (180)
102 PHA02518 ParA-like protein; Pr 91.2 0.33 7.2E-06 40.6 4.5 33 2-36 10-42 (211)
103 PF00004 AAA: ATPase family as 91.1 0.11 2.3E-06 39.8 1.3 15 2-16 7-21 (132)
104 KOG2739 Leucine-rich acidic nu 91.1 0.13 2.8E-06 44.0 1.8 65 275-341 58-128 (260)
105 cd02042 ParA ParA and ParB of 91.0 0.13 2.9E-06 37.7 1.7 15 2-16 9-23 (104)
106 TIGR03420 DnaA_homol_Hda DnaA 91.0 0.19 4.2E-06 42.7 2.9 28 2-31 47-74 (226)
107 PRK09087 hypothetical protein; 91.0 0.71 1.5E-05 39.4 6.3 42 65-110 152-193 (226)
108 PRK08233 hypothetical protein; 90.8 0.14 3.1E-06 41.8 1.8 15 1-15 11-25 (182)
109 PF07015 VirC1: VirC1 protein; 90.8 0.43 9.4E-06 40.4 4.7 36 2-39 11-46 (231)
110 KOG1644 U2-associated snRNP A' 90.8 0.37 8E-06 39.8 4.1 63 276-339 58-123 (233)
111 COG1428 Deoxynucleoside kinase 90.7 0.13 2.8E-06 42.7 1.4 17 1-17 12-28 (216)
112 PF13671 AAA_33: AAA domain; P 90.6 0.16 3.6E-06 39.5 1.9 15 1-15 7-21 (143)
113 COG0125 Tmk Thymidylate kinase 90.5 0.46 1E-05 39.8 4.6 43 2-46 12-54 (208)
114 PF00910 RNA_helicase: RNA hel 90.5 0.13 2.9E-06 38.1 1.3 14 2-15 7-20 (107)
115 PRK00625 shikimate kinase; Pro 90.5 0.16 3.4E-06 41.4 1.8 15 1-15 8-22 (173)
116 cd02019 NK Nucleoside/nucleoti 90.3 0.18 3.9E-06 34.0 1.7 15 2-16 8-22 (69)
117 KOG0738 AAA+-type ATPase [Post 90.3 0.64 1.4E-05 42.3 5.4 20 2-23 254-273 (491)
118 PF02367 UPF0079: Uncharacteri 90.3 0.16 3.4E-06 38.7 1.5 14 3-16 25-38 (123)
119 KOG3665 ZYG-1-like serine/thre 90.3 0.14 2.9E-06 51.2 1.4 64 274-339 139-205 (699)
120 COG3899 Predicted ATPase [Gene 90.2 3.4 7.4E-05 42.6 11.4 139 65-221 218-383 (849)
121 PRK06762 hypothetical protein; 90.1 0.17 3.6E-06 40.8 1.7 15 1-15 10-24 (166)
122 PF07728 AAA_5: AAA domain (dy 90.1 0.55 1.2E-05 36.4 4.5 35 2-41 8-42 (139)
123 cd01123 Rad51_DMC1_radA Rad51_ 90.1 0.46 1E-05 40.6 4.5 41 2-42 28-72 (235)
124 cd02040 NifH NifH gene encodes 90.1 0.16 3.6E-06 44.4 1.7 31 2-34 10-40 (270)
125 KOG2028 ATPase related to the 90.0 0.25 5.4E-06 44.5 2.7 29 2-34 171-199 (554)
126 PF00485 PRK: Phosphoribulokin 89.8 0.17 3.8E-06 42.0 1.6 14 2-15 8-21 (194)
127 cd02037 MRP-like MRP (Multiple 89.8 0.18 3.9E-06 40.8 1.6 15 2-16 9-23 (169)
128 PRK12608 transcription termina 89.8 0.82 1.8E-05 41.8 5.9 46 2-49 142-190 (380)
129 cd02036 MinD Bacterial cell di 89.8 0.19 4.1E-06 40.9 1.7 16 1-16 8-23 (179)
130 PRK05642 DNA replication initi 89.7 1.4 3E-05 37.8 7.1 14 2-15 54-67 (234)
131 COG0529 CysC Adenylylsulfate k 89.5 0.22 4.7E-06 40.2 1.8 16 1-16 31-46 (197)
132 COG1149 MinD superfamily P-loo 89.5 0.32 6.9E-06 42.0 2.9 32 2-35 11-42 (284)
133 smart00369 LRR_TYP Leucine-ric 89.5 0.27 5.9E-06 25.8 1.6 17 329-346 2-18 (26)
134 smart00370 LRR Leucine-rich re 89.5 0.27 5.9E-06 25.8 1.6 17 329-346 2-18 (26)
135 PRK13849 putative crown gall t 89.5 0.59 1.3E-05 40.0 4.6 16 2-17 11-26 (231)
136 PRK13947 shikimate kinase; Pro 89.4 0.21 4.5E-06 40.4 1.7 15 1-15 9-23 (171)
137 PRK09361 radB DNA repair and r 89.4 0.59 1.3E-05 39.7 4.6 36 2-40 32-67 (225)
138 COG3640 CooC CO dehydrogenase 89.4 0.5 1.1E-05 40.0 3.9 34 2-36 9-42 (255)
139 TIGR01281 DPOR_bchL light-inde 89.3 0.2 4.4E-06 43.9 1.7 14 2-15 9-22 (268)
140 PRK13231 nitrogenase reductase 89.3 0.21 4.6E-06 43.7 1.8 15 2-16 11-25 (264)
141 cd02021 GntK Gluconate kinase 89.2 0.23 5E-06 39.2 1.8 15 1-15 7-21 (150)
142 PRK06217 hypothetical protein; 89.1 0.22 4.8E-06 40.9 1.7 16 1-16 9-24 (183)
143 PF06564 YhjQ: YhjQ protein; 89.1 0.22 4.9E-06 42.7 1.7 15 2-16 11-25 (243)
144 PRK10037 cell division protein 89.1 0.22 4.7E-06 43.2 1.7 15 2-16 11-25 (250)
145 KOG2982 Uncharacterized conser 89.1 0.26 5.7E-06 43.1 2.1 61 278-339 93-156 (418)
146 PTZ00202 tuzin; Provisional 89.0 0.75 1.6E-05 43.0 5.1 43 1-51 294-336 (550)
147 PRK14949 DNA polymerase III su 89.0 2.6 5.7E-05 43.0 9.2 44 65-112 177-221 (944)
148 PRK00131 aroK shikimate kinase 89.0 0.23 5E-06 40.1 1.7 15 1-15 12-26 (175)
149 PRK10646 ADP-binding protein; 89.0 0.21 4.6E-06 39.5 1.4 14 3-16 38-51 (153)
150 cd01393 recA_like RecA is a b 89.0 0.63 1.4E-05 39.5 4.5 38 2-41 28-71 (226)
151 PRK13233 nifH nitrogenase redu 89.0 0.22 4.7E-06 43.9 1.6 14 2-15 11-24 (275)
152 PHA00729 NTP-binding motif con 88.9 0.22 4.8E-06 42.1 1.5 15 2-16 26-40 (226)
153 PF02223 Thymidylate_kin: Thym 88.9 0.64 1.4E-05 38.2 4.3 42 2-46 5-47 (186)
154 PF03266 NTPase_1: NTPase; In 88.9 0.35 7.7E-06 39.1 2.7 15 2-16 8-22 (168)
155 PRK13185 chlL protochlorophyll 88.8 0.24 5.1E-06 43.5 1.7 15 2-16 11-25 (270)
156 PRK13230 nitrogenase reductase 88.7 0.24 5.1E-06 43.8 1.7 16 2-17 10-25 (279)
157 PRK05480 uridine/cytidine kina 88.7 0.23 5E-06 41.7 1.5 14 2-15 15-28 (209)
158 TIGR01969 minD_arch cell divis 88.7 0.24 5.2E-06 42.8 1.7 14 2-15 10-23 (251)
159 cd01120 RecA-like_NTPases RecA 88.6 0.48 1E-05 37.5 3.3 32 2-35 8-39 (165)
160 TIGR00150 HI0065_YjeE ATPase, 88.6 0.24 5.2E-06 38.3 1.4 16 2-17 31-46 (133)
161 KOG2123 Uncharacterized conser 88.6 0.095 2.1E-06 45.4 -0.9 62 279-342 38-101 (388)
162 PRK13232 nifH nitrogenase redu 88.6 0.25 5.3E-06 43.5 1.7 14 2-15 10-23 (273)
163 TIGR01287 nifH nitrogenase iro 88.6 0.25 5.3E-06 43.6 1.7 17 2-18 9-25 (275)
164 PRK12323 DNA polymerase III su 88.6 2.1 4.5E-05 42.2 8.0 41 65-109 182-222 (700)
165 COG0703 AroK Shikimate kinase 88.6 0.28 6E-06 39.6 1.8 21 1-23 10-30 (172)
166 cd01394 radB RadB. The archaea 88.6 0.77 1.7E-05 38.8 4.7 33 2-36 28-60 (218)
167 cd00227 CPT Chloramphenicol (C 88.4 0.26 5.7E-06 40.1 1.7 15 1-15 10-24 (175)
168 PRK13235 nifH nitrogenase redu 88.3 0.26 5.6E-06 43.4 1.7 14 2-15 10-23 (274)
169 PF03029 ATP_bind_1: Conserved 88.3 0.55 1.2E-05 40.4 3.6 20 1-20 4-23 (238)
170 PRK12377 putative replication 88.2 0.43 9.3E-06 41.3 2.9 29 2-32 110-138 (248)
171 PRK07952 DNA replication prote 88.2 0.33 7.1E-06 41.9 2.1 28 2-31 108-135 (244)
172 cd01672 TMPK Thymidine monopho 88.2 1 2.2E-05 37.2 5.1 15 2-16 9-23 (200)
173 TIGR00235 udk uridine kinase. 88.2 0.28 6E-06 41.2 1.7 14 2-15 15-28 (207)
174 PRK14960 DNA polymerase III su 88.1 2.5 5.4E-05 41.8 8.1 39 65-107 176-214 (702)
175 PTZ00112 origin recognition co 88.1 13 0.00028 38.3 13.1 48 1-48 789-841 (1164)
176 cd03110 Fer4_NifH_child This p 88.1 0.3 6.4E-06 39.9 1.7 14 2-15 9-22 (179)
177 KOG2120 SCF ubiquitin ligase, 88.0 0.12 2.7E-06 45.1 -0.5 63 278-340 206-271 (419)
178 COG0467 RAD55 RecA-superfamily 88.0 0.94 2E-05 39.5 5.0 39 2-44 32-70 (260)
179 cd02024 NRK1 Nicotinamide ribo 87.8 0.29 6.4E-06 40.3 1.5 14 2-15 8-21 (187)
180 PRK06547 hypothetical protein; 87.8 0.31 6.7E-06 39.6 1.7 16 1-16 23-38 (172)
181 TIGR02322 phosphon_PhnN phosph 87.7 0.32 7E-06 39.7 1.7 16 1-16 9-24 (179)
182 PRK05564 DNA polymerase III su 87.5 3.9 8.5E-05 36.7 8.8 44 2-46 35-83 (313)
183 PRK06696 uridine kinase; Valid 87.5 0.3 6.6E-06 41.5 1.5 14 2-15 31-44 (223)
184 COG0572 Udk Uridine kinase [Nu 87.4 0.43 9.3E-06 40.1 2.3 19 2-22 17-35 (218)
185 cd02117 NifH_like This family 87.4 0.33 7.1E-06 40.9 1.7 14 2-15 9-22 (212)
186 PRK08903 DnaA regulatory inact 87.3 0.47 1E-05 40.4 2.6 15 2-16 51-65 (227)
187 cd03111 CpaE_like This protein 87.2 0.55 1.2E-05 34.7 2.6 19 2-22 9-27 (106)
188 cd02028 UMPK_like Uridine mono 87.2 0.51 1.1E-05 38.6 2.6 14 2-15 8-21 (179)
189 cd01983 Fer4_NifH The Fer4_Nif 87.2 0.38 8.3E-06 34.2 1.7 14 2-15 8-21 (99)
190 PRK14958 DNA polymerase III su 87.1 4.3 9.4E-05 39.2 9.3 15 2-16 47-61 (509)
191 PRK14964 DNA polymerase III su 87.0 4.1 8.9E-05 39.0 8.9 14 2-15 44-57 (491)
192 TIGR01313 therm_gnt_kin carboh 87.0 0.37 8E-06 38.6 1.7 15 1-15 6-20 (163)
193 cd02025 PanK Pantothenate kina 87.0 0.34 7.3E-06 41.2 1.5 14 2-15 8-21 (220)
194 cd02032 Bchl_like This family 87.0 0.69 1.5E-05 40.5 3.5 15 2-16 9-23 (267)
195 PRK08116 hypothetical protein; 86.9 0.56 1.2E-05 41.1 2.9 28 2-31 123-150 (268)
196 COG0563 Adk Adenylate kinase a 86.8 0.36 7.7E-06 39.5 1.5 15 2-16 9-23 (178)
197 PRK00889 adenylylsulfate kinas 86.7 0.38 8.2E-06 39.1 1.7 16 1-16 12-27 (175)
198 TIGR03371 cellulose_yhjQ cellu 86.6 0.38 8.2E-06 41.4 1.7 29 2-32 11-39 (246)
199 PRK13976 thymidylate kinase; P 86.6 1.1 2.3E-05 37.8 4.4 43 2-46 9-53 (209)
200 PRK04040 adenylate kinase; Pro 86.6 0.39 8.5E-06 39.7 1.7 15 1-15 10-24 (188)
201 PRK11545 gntK gluconate kinase 86.5 0.4 8.7E-06 38.6 1.6 14 2-15 4-17 (163)
202 PRK13948 shikimate kinase; Pro 86.4 0.4 8.6E-06 39.4 1.6 15 1-15 18-32 (182)
203 TIGR01968 minD_bact septum sit 86.3 0.4 8.8E-06 41.6 1.7 14 2-15 11-24 (261)
204 PRK13975 thymidylate kinase; P 86.3 0.41 9E-06 39.6 1.7 15 1-15 10-24 (196)
205 PRK07667 uridine kinase; Provi 86.1 0.83 1.8E-05 37.9 3.4 15 1-15 25-39 (193)
206 cd00464 SK Shikimate kinase (S 86.1 0.43 9.4E-06 37.6 1.7 15 1-15 7-21 (154)
207 cd02023 UMPK Uridine monophosp 86.1 0.41 8.8E-06 39.8 1.5 14 2-15 8-21 (198)
208 TIGR02881 spore_V_K stage V sp 86.1 0.4 8.6E-06 41.9 1.5 14 2-15 51-64 (261)
209 CHL00072 chlL photochlorophyll 86.1 0.42 9.2E-06 42.5 1.7 15 2-16 9-23 (290)
210 PRK07003 DNA polymerase III su 86.1 2.6 5.7E-05 42.3 7.2 43 65-111 177-220 (830)
211 PRK10078 ribose 1,5-bisphospho 86.0 0.48 1E-05 39.0 1.9 15 1-15 10-24 (186)
212 PF01202 SKI: Shikimate kinase 86.0 0.38 8.3E-06 38.4 1.3 14 2-15 1-14 (158)
213 PRK06761 hypothetical protein; 85.9 0.98 2.1E-05 39.8 3.8 16 1-16 11-26 (282)
214 PRK13946 shikimate kinase; Pro 85.8 0.47 1E-05 39.0 1.8 15 1-15 18-32 (184)
215 KOG3347 Predicted nucleotide k 85.8 0.44 9.5E-06 37.3 1.4 14 2-15 16-29 (176)
216 PRK13949 shikimate kinase; Pro 85.8 0.47 1E-05 38.4 1.7 15 1-15 9-23 (169)
217 KOG1969 DNA replication checkp 85.7 1.3 2.8E-05 43.7 4.8 41 2-47 335-375 (877)
218 PF00308 Bac_DnaA: Bacterial d 85.7 5.1 0.00011 34.0 8.1 15 2-16 43-57 (219)
219 PF08477 Miro: Miro-like prote 85.7 0.46 1E-05 35.5 1.6 16 2-17 8-23 (119)
220 PF10662 PduV-EutP: Ethanolami 85.7 0.48 1E-05 37.0 1.7 16 2-17 10-25 (143)
221 PRK10818 cell division inhibit 85.6 0.46 9.9E-06 41.7 1.7 29 2-32 12-40 (270)
222 CHL00181 cbbX CbbX; Provisiona 85.6 0.64 1.4E-05 41.2 2.6 14 2-15 68-81 (287)
223 COG0802 Predicted ATPase or ki 85.6 0.44 9.4E-06 37.4 1.3 15 3-17 35-49 (149)
224 KOG1532 GTPase XAB1, interacts 85.4 0.63 1.4E-05 40.3 2.3 21 1-23 27-47 (366)
225 PF08423 Rad51: Rad51; InterP 85.3 1.5 3.2E-05 38.3 4.7 41 2-42 47-91 (256)
226 TIGR00041 DTMP_kinase thymidyl 85.3 1.6 3.5E-05 36.0 4.8 17 2-18 12-28 (195)
227 PRK07994 DNA polymerase III su 85.3 4 8.8E-05 40.4 8.1 39 65-107 177-215 (647)
228 COG0194 Gmk Guanylate kinase [ 85.2 0.54 1.2E-05 38.3 1.7 16 1-16 12-27 (191)
229 TIGR02236 recomb_radA DNA repa 85.1 1.4 3E-05 39.6 4.6 42 2-43 104-149 (310)
230 COG1936 Predicted nucleotide k 85.1 0.52 1.1E-05 37.9 1.6 13 2-14 9-21 (180)
231 smart00364 LRR_BAC Leucine-ric 85.1 0.59 1.3E-05 24.7 1.3 18 282-299 2-19 (26)
232 KOG0727 26S proteasome regulat 85.1 1.6 3.5E-05 37.4 4.6 15 2-16 198-212 (408)
233 TIGR01359 UMP_CMP_kin_fam UMP- 85.0 0.52 1.1E-05 38.6 1.7 15 1-15 7-21 (183)
234 cd02034 CooC The accessory pro 85.0 0.99 2.1E-05 34.0 3.0 15 2-16 8-22 (116)
235 PRK05057 aroK shikimate kinase 85.0 0.52 1.1E-05 38.3 1.6 15 1-15 12-26 (172)
236 PRK04301 radA DNA repair and r 84.9 1.4 3.1E-05 39.7 4.6 42 2-43 111-156 (317)
237 CHL00175 minD septum-site dete 84.9 0.52 1.1E-05 41.6 1.7 14 2-15 25-38 (281)
238 PF14516 AAA_35: AAA-like doma 84.7 8.5 0.00018 34.9 9.5 47 65-119 200-246 (331)
239 PRK13973 thymidylate kinase; P 84.6 1.9 4.1E-05 36.3 5.0 43 2-46 12-54 (213)
240 PRK13695 putative NTPase; Prov 84.6 0.89 1.9E-05 36.9 2.9 15 2-16 9-23 (174)
241 PRK03846 adenylylsulfate kinas 84.5 0.56 1.2E-05 39.1 1.7 15 1-15 32-46 (198)
242 PRK06921 hypothetical protein; 84.5 0.89 1.9E-05 39.9 3.0 28 2-31 126-154 (266)
243 PRK12339 2-phosphoglycerate ki 84.4 0.59 1.3E-05 38.9 1.7 15 1-15 11-25 (197)
244 PRK03731 aroL shikimate kinase 84.3 0.58 1.3E-05 37.8 1.7 15 1-15 10-24 (171)
245 PF00693 Herpes_TK: Thymidine 84.3 0.54 1.2E-05 41.0 1.5 14 3-16 4-17 (281)
246 COG4088 Predicted nucleotide k 84.2 0.56 1.2E-05 38.9 1.4 18 2-21 10-27 (261)
247 TIGR03574 selen_PSTK L-seryl-t 84.1 0.58 1.3E-05 40.5 1.7 16 1-16 7-22 (249)
248 TIGR01242 26Sp45 26S proteasom 84.0 0.59 1.3E-05 43.1 1.7 19 2-22 165-183 (364)
249 PRK06835 DNA replication prote 83.9 0.95 2.1E-05 41.0 3.0 29 2-32 192-220 (329)
250 PF07724 AAA_2: AAA domain (Cd 83.9 1.1 2.5E-05 36.3 3.1 30 2-33 12-42 (171)
251 PF09140 MipZ: ATPase MipZ; I 83.9 0.66 1.4E-05 39.8 1.8 15 2-16 10-24 (261)
252 TIGR01360 aden_kin_iso1 adenyl 83.7 0.68 1.5E-05 37.9 1.8 15 1-15 11-25 (188)
253 PRK13236 nitrogenase reductase 83.7 0.62 1.3E-05 41.5 1.7 14 2-15 15-28 (296)
254 KOG1644 U2-associated snRNP A' 83.6 0.9 2E-05 37.6 2.4 59 282-343 42-101 (233)
255 COG4778 PhnL ABC-type phosphon 83.6 0.96 2.1E-05 36.4 2.4 26 2-30 46-71 (235)
256 PRK13341 recombination factor 83.5 0.66 1.4E-05 46.6 2.0 15 1-15 60-74 (725)
257 PHA02519 plasmid partition pro 83.5 0.63 1.4E-05 43.2 1.7 27 2-30 116-142 (387)
258 PF13521 AAA_28: AAA domain; P 83.5 0.54 1.2E-05 37.7 1.1 14 2-15 8-21 (163)
259 cd00880 Era_like Era (E. coli 83.4 0.74 1.6E-05 35.8 1.9 15 2-16 5-19 (163)
260 PF04665 Pox_A32: Poxvirus A32 83.4 1.2 2.5E-05 38.3 3.1 28 2-31 22-49 (241)
261 COG1100 GTPase SAR1 and relate 83.3 0.71 1.5E-05 38.8 1.9 17 1-17 13-29 (219)
262 cd02027 APSK Adenosine 5'-phos 83.3 0.71 1.5E-05 36.5 1.7 15 2-16 8-22 (149)
263 COG1223 Predicted ATPase (AAA+ 83.3 2.3 5E-05 36.8 4.7 51 2-52 160-250 (368)
264 PRK06620 hypothetical protein; 83.2 0.7 1.5E-05 39.1 1.7 16 2-17 53-68 (214)
265 cd02020 CMPK Cytidine monophos 83.2 0.71 1.5E-05 36.0 1.7 15 1-15 7-21 (147)
266 TIGR03263 guanyl_kin guanylate 83.1 0.78 1.7E-05 37.4 1.9 14 2-15 10-23 (180)
267 PRK13705 plasmid-partitioning 83.1 0.65 1.4E-05 43.1 1.6 27 2-30 116-142 (388)
268 TIGR02880 cbbX_cfxQ probable R 83.0 1 2.2E-05 39.9 2.7 14 2-15 67-80 (284)
269 PRK05707 DNA polymerase III su 82.9 11 0.00024 34.1 9.4 40 65-112 164-203 (328)
270 cd00983 recA RecA is a bacter 82.9 1.3 2.9E-05 39.8 3.4 34 2-37 64-97 (325)
271 TIGR03453 partition_RepA plasm 82.8 0.69 1.5E-05 43.0 1.7 29 2-32 114-142 (387)
272 cd01124 KaiC KaiC is a circadi 82.8 1.4 3.1E-05 36.0 3.4 30 2-33 8-37 (187)
273 TIGR02016 BchX chlorophyllide 82.8 1.3 2.8E-05 39.5 3.3 29 2-32 9-37 (296)
274 cd00820 PEPCK_HprK Phosphoenol 82.7 0.78 1.7E-05 33.9 1.6 13 2-14 24-36 (107)
275 COG1124 DppF ABC-type dipeptid 82.7 1.2 2.5E-05 38.0 2.8 14 2-15 42-55 (252)
276 PRK13768 GTPase; Provisional 82.7 1.4 3.1E-05 38.2 3.5 16 1-16 10-25 (253)
277 TIGR02640 gas_vesic_GvpN gas v 82.6 0.7 1.5E-05 40.4 1.5 35 2-41 30-64 (262)
278 KOG0733 Nuclear AAA ATPase (VC 82.6 1.1 2.4E-05 43.2 2.9 15 2-16 554-568 (802)
279 KOG0652 26S proteasome regulat 82.5 6.4 0.00014 34.0 7.1 14 2-15 214-227 (424)
280 cd01135 V_A-ATPase_B V/A-type 82.5 2.2 4.7E-05 37.4 4.5 45 2-46 78-125 (276)
281 PF03796 DnaB_C: DnaB-like hel 82.4 2.7 5.8E-05 36.6 5.2 47 2-51 28-74 (259)
282 TIGR00176 mobB molybdopterin-g 82.3 1.4 3.1E-05 35.1 3.1 15 2-16 8-22 (155)
283 cd00550 ArsA_ATPase Oxyanion-t 82.3 1.7 3.7E-05 37.8 3.8 29 2-32 9-37 (254)
284 PRK12597 F0F1 ATP synthase sub 82.1 2 4.3E-05 40.7 4.4 44 2-46 152-196 (461)
285 TIGR00390 hslU ATP-dependent p 82.0 2 4.4E-05 40.0 4.3 14 2-15 56-69 (441)
286 PRK03992 proteasome-activating 82.0 0.75 1.6E-05 42.8 1.6 14 2-15 174-187 (389)
287 PLN03187 meiotic recombination 82.0 1.9 4.1E-05 39.3 4.1 46 2-48 135-184 (344)
288 PF01695 IstB_IS21: IstB-like 81.9 1.3 2.8E-05 36.3 2.8 28 2-31 56-83 (178)
289 KOG3864 Uncharacterized conser 81.9 0.44 9.6E-06 39.3 0.0 35 304-338 150-185 (221)
290 TIGR03499 FlhF flagellar biosy 81.8 3.1 6.7E-05 36.8 5.3 29 2-31 203-232 (282)
291 KOG0473 Leucine-rich repeat pr 81.8 0.078 1.7E-06 44.7 -4.4 66 274-340 57-122 (326)
292 KOG2543 Origin recognition com 81.7 2.2 4.8E-05 38.9 4.3 43 2-49 39-81 (438)
293 COG1474 CDC6 Cdc6-related prot 81.7 2.1 4.6E-05 39.3 4.4 46 2-49 51-98 (366)
294 PRK14532 adenylate kinase; Pro 81.7 0.86 1.9E-05 37.5 1.7 15 1-15 8-22 (188)
295 PLN02924 thymidylate kinase 81.7 2.4 5.2E-05 36.0 4.4 44 2-46 25-68 (220)
296 TIGR02012 tigrfam_recA protein 81.6 1.6 3.5E-05 39.2 3.5 34 2-37 64-97 (321)
297 cd00071 GMPK Guanosine monopho 81.6 0.97 2.1E-05 35.2 1.9 14 2-15 8-21 (137)
298 COG3265 GntK Gluconate kinase 81.6 0.86 1.9E-05 35.7 1.5 17 2-20 4-20 (161)
299 PRK13869 plasmid-partitioning 81.6 0.82 1.8E-05 42.7 1.7 17 2-18 131-147 (405)
300 PRK05973 replicative DNA helic 81.5 2.9 6.4E-05 35.8 4.9 39 2-44 73-111 (237)
301 PRK14530 adenylate kinase; Pro 81.3 0.88 1.9E-05 38.4 1.7 15 1-15 11-25 (215)
302 PRK05201 hslU ATP-dependent pr 81.2 1.8 3.8E-05 40.4 3.6 14 2-15 59-72 (443)
303 KOG1909 Ran GTPase-activating 81.2 1.6 3.5E-05 39.1 3.2 63 277-339 236-308 (382)
304 KOG2120 SCF ubiquitin ligase, 81.0 0.72 1.6E-05 40.6 1.0 61 279-341 310-375 (419)
305 PF00448 SRP54: SRP54-type pro 81.0 3 6.5E-05 34.7 4.7 48 2-51 10-58 (196)
306 PRK04182 cytidylate kinase; Pr 80.8 0.95 2.1E-05 36.7 1.7 15 1-15 8-22 (180)
307 TIGR03815 CpaE_hom_Actino heli 80.7 1.8 3.9E-05 39.1 3.6 14 2-15 103-116 (322)
308 PLN03186 DNA repair protein RA 80.5 1.9 4.1E-05 39.2 3.6 46 2-48 132-181 (342)
309 PRK13234 nifH nitrogenase redu 80.5 0.97 2.1E-05 40.3 1.7 14 2-15 13-26 (295)
310 PRK00698 tmk thymidylate kinas 80.4 3.1 6.7E-05 34.5 4.7 16 2-17 12-27 (205)
311 PRK00300 gmk guanylate kinase; 80.4 1 2.2E-05 37.6 1.7 15 2-16 14-28 (205)
312 TIGR03018 pepcterm_TyrKin exop 80.2 1 2.3E-05 37.7 1.7 14 2-15 45-58 (207)
313 smart00173 RAS Ras subfamily o 80.2 1.1 2.3E-05 35.7 1.7 15 2-16 9-23 (164)
314 PF02562 PhoH: PhoH-like prote 80.2 1.5 3.2E-05 36.7 2.6 30 1-30 27-56 (205)
315 cd04139 RalA_RalB RalA/RalB su 80.2 1.1 2.3E-05 35.5 1.7 15 2-16 9-23 (164)
316 PRK09183 transposase/IS protei 80.1 1.6 3.4E-05 38.1 2.9 15 2-16 111-125 (259)
317 cd00984 DnaB_C DnaB helicase C 80.1 3.4 7.5E-05 35.4 5.0 44 2-48 22-65 (242)
318 PRK09270 nucleoside triphospha 80.0 1 2.2E-05 38.4 1.7 14 2-15 42-55 (229)
319 KOG0734 AAA+-type ATPase conta 79.9 1.2 2.6E-05 42.3 2.1 16 2-17 346-361 (752)
320 PRK07933 thymidylate kinase; V 79.9 2.9 6.3E-05 35.2 4.3 17 2-18 9-25 (213)
321 PRK09825 idnK D-gluconate kina 79.9 1.1 2.4E-05 36.5 1.7 14 2-15 12-25 (176)
322 PRK08939 primosomal protein Dn 79.8 1.6 3.5E-05 39.1 2.8 29 2-32 165-193 (306)
323 PTZ00361 26 proteosome regulat 79.7 1 2.2E-05 42.4 1.7 20 2-23 226-245 (438)
324 cd01428 ADK Adenylate kinase ( 79.7 1.1 2.3E-05 37.0 1.7 15 1-15 7-21 (194)
325 cd01131 PilT Pilus retraction 79.6 1.8 3.9E-05 36.0 2.9 25 2-28 10-34 (198)
326 PTZ00088 adenylate kinase 1; P 79.5 1.1 2.4E-05 38.3 1.7 15 1-15 14-28 (229)
327 PRK11670 antiporter inner memb 79.4 1.1 2.4E-05 41.3 1.7 14 2-15 117-130 (369)
328 cd04119 RJL RJL (RabJ-Like) su 79.3 1.2 2.6E-05 35.3 1.8 15 2-16 9-23 (168)
329 COG1484 DnaC DNA replication p 79.2 1.3 2.9E-05 38.4 2.1 30 2-33 114-143 (254)
330 cd02030 NDUO42 NADH:Ubiquinone 79.2 1 2.2E-05 38.1 1.4 15 2-16 8-22 (219)
331 PRK08181 transposase; Validate 79.2 1.5 3.3E-05 38.4 2.5 28 2-31 115-142 (269)
332 COG0468 RecA RecA/RadA recombi 79.2 3.3 7.1E-05 36.5 4.5 40 2-43 69-108 (279)
333 TIGR01618 phage_P_loop phage n 79.2 1 2.2E-05 38.2 1.3 14 2-15 21-34 (220)
334 PHA02530 pseT polynucleotide k 79.1 1.1 2.5E-05 39.8 1.7 15 1-15 10-24 (300)
335 cd04138 H_N_K_Ras_like H-Ras/N 79.1 1.2 2.6E-05 35.1 1.7 15 2-16 10-24 (162)
336 cd01673 dNK Deoxyribonucleosid 79.0 1.2 2.5E-05 36.8 1.7 16 1-16 7-22 (193)
337 PRK14088 dnaA chromosomal repl 79.0 1.4 3.1E-05 41.6 2.4 28 2-31 139-168 (440)
338 PF03193 DUF258: Protein of un 78.9 1.4 2.9E-05 35.3 1.9 16 2-17 44-59 (161)
339 KOG2123 Uncharacterized conser 78.9 0.26 5.6E-06 42.8 -2.3 62 280-345 17-78 (388)
340 PF03205 MobB: Molybdopterin g 78.9 1.2 2.6E-05 34.8 1.6 29 2-31 9-37 (140)
341 PRK09354 recA recombinase A; P 78.9 2.4 5.1E-05 38.6 3.6 34 2-37 69-102 (349)
342 cd01122 GP4d_helicase GP4d_hel 78.9 4.1 8.8E-05 35.7 5.1 44 2-48 39-82 (271)
343 cd04124 RabL2 RabL2 subfamily. 78.8 1.3 2.8E-05 35.3 1.8 15 2-16 9-23 (161)
344 PF13245 AAA_19: Part of AAA d 78.7 3.4 7.3E-05 28.4 3.6 14 2-15 19-33 (76)
345 PRK10536 hypothetical protein; 78.7 1.7 3.8E-05 37.6 2.6 23 2-24 83-105 (262)
346 PRK12422 chromosomal replicati 78.7 1.7 3.7E-05 41.1 2.8 27 2-30 150-176 (445)
347 cd04113 Rab4 Rab4 subfamily. 78.6 1.3 2.8E-05 35.1 1.7 15 2-16 9-23 (161)
348 cd03114 ArgK-like The function 78.6 1.3 2.8E-05 35.0 1.7 15 2-16 8-22 (148)
349 TIGR02238 recomb_DMC1 meiotic 78.5 2.8 6.2E-05 37.6 4.0 46 2-48 105-154 (313)
350 PF13614 AAA_31: AAA domain; P 78.4 3.5 7.6E-05 32.5 4.2 31 2-34 10-40 (157)
351 TIGR00554 panK_bact pantothena 78.3 1.2 2.7E-05 39.4 1.7 14 2-15 71-84 (290)
352 TIGR02173 cyt_kin_arch cytidyl 78.3 1.3 2.8E-05 35.6 1.7 15 1-15 8-22 (171)
353 TIGR00362 DnaA chromosomal rep 78.3 1.5 3.2E-05 41.1 2.3 27 2-30 145-173 (405)
354 PRK00149 dnaA chromosomal repl 78.2 1.6 3.5E-05 41.5 2.5 28 2-31 157-186 (450)
355 COG2074 2-phosphoglycerate kin 78.0 1.1 2.4E-05 38.4 1.2 19 2-20 98-116 (299)
356 PRK14961 DNA polymerase III su 77.9 1.2 2.6E-05 41.0 1.5 15 2-16 47-61 (363)
357 TIGR00764 lon_rel lon-related 77.8 3.1 6.7E-05 41.1 4.4 49 1-52 45-94 (608)
358 cd01862 Rab7 Rab7 subfamily. 77.8 1.5 3.2E-05 35.1 1.9 15 2-16 9-23 (172)
359 TIGR03877 thermo_KaiC_1 KaiC d 77.8 4.4 9.6E-05 34.7 4.9 38 2-43 30-67 (237)
360 COG1102 Cmk Cytidylate kinase 77.7 1.2 2.6E-05 35.5 1.2 16 2-17 9-24 (179)
361 PRK12724 flagellar biosynthesi 77.7 3.1 6.7E-05 38.9 4.1 15 2-16 232-246 (432)
362 PRK08840 replicative DNA helic 77.6 3.5 7.6E-05 39.3 4.6 61 2-70 226-286 (464)
363 TIGR02903 spore_lon_C ATP-depe 77.6 1.7 3.6E-05 43.1 2.5 31 2-32 184-217 (615)
364 COG1419 FlhF Flagellar GTP-bin 77.5 4.1 8.8E-05 37.6 4.7 51 2-53 212-264 (407)
365 PLN03025 replication factor C 77.5 2.9 6.3E-05 37.7 3.9 14 2-15 43-56 (319)
366 cd03115 SRP The signal recogni 77.5 2.5 5.4E-05 34.1 3.2 15 1-15 8-22 (173)
367 PRK10751 molybdopterin-guanine 77.4 1.4 3E-05 35.8 1.6 15 2-16 15-29 (173)
368 COG0714 MoxR-like ATPases [Gen 77.4 2.7 5.8E-05 38.1 3.6 35 2-41 52-86 (329)
369 PRK15453 phosphoribulokinase; 77.4 1.3 2.9E-05 38.8 1.5 14 2-15 14-27 (290)
370 PRK14738 gmk guanylate kinase; 77.3 1.5 3.2E-05 36.8 1.8 14 2-15 22-35 (206)
371 TIGR03305 alt_F1F0_F1_bet alte 77.3 3.4 7.4E-05 38.9 4.3 44 2-46 147-191 (449)
372 PRK06526 transposase; Provisio 77.3 1.4 3E-05 38.3 1.7 15 2-16 107-121 (254)
373 PRK00440 rfc replication facto 77.2 18 0.00038 32.3 8.9 15 2-16 47-61 (319)
374 PRK14722 flhF flagellar biosyn 77.2 5.4 0.00012 36.7 5.5 49 2-50 146-195 (374)
375 PF00625 Guanylate_kin: Guanyl 77.2 1.9 4.2E-05 35.3 2.4 28 2-31 11-38 (183)
376 PTZ00454 26S protease regulato 77.2 1.3 2.9E-05 41.2 1.6 14 2-15 188-201 (398)
377 PRK12338 hypothetical protein; 77.2 1.3 2.9E-05 39.6 1.5 14 2-15 13-26 (319)
378 KOG0473 Leucine-rich repeat pr 77.0 0.064 1.4E-06 45.1 -6.3 49 273-321 79-127 (326)
379 TIGR02528 EutP ethanolamine ut 77.0 1.6 3.4E-05 33.8 1.8 15 2-16 9-23 (142)
380 KOG0726 26S proteasome regulat 77.0 1.3 2.9E-05 38.7 1.4 20 2-23 228-247 (440)
381 TIGR03575 selen_PSTK_euk L-ser 77.0 1.4 3.1E-05 39.9 1.7 16 1-16 7-22 (340)
382 PRK14963 DNA polymerase III su 77.0 1.2 2.7E-05 42.8 1.4 40 65-108 174-213 (504)
383 PRK06904 replicative DNA helic 76.9 4.1 9E-05 38.9 4.8 46 2-50 230-275 (472)
384 PF01926 MMR_HSR1: 50S ribosom 76.8 1.8 3.9E-05 32.2 2.0 16 1-16 7-22 (116)
385 PF00005 ABC_tran: ABC transpo 76.7 1.7 3.6E-05 33.5 1.8 26 2-30 20-45 (137)
386 PRK14737 gmk guanylate kinase; 76.7 1.6 3.4E-05 36.0 1.7 14 2-15 13-26 (186)
387 PRK06067 flagellar accessory p 76.7 5.4 0.00012 34.0 5.2 38 2-43 34-71 (234)
388 PF06745 KaiC: KaiC; InterPro 76.6 4.2 9E-05 34.5 4.4 32 2-35 28-60 (226)
389 KOG0744 AAA+-type ATPase [Post 76.6 1.3 2.8E-05 39.4 1.3 31 1-31 185-217 (423)
390 TIGR00455 apsK adenylylsulfate 76.6 1.7 3.6E-05 35.6 1.9 15 2-16 27-41 (184)
391 cd04136 Rap_like Rap-like subf 76.5 1.6 3.5E-05 34.5 1.8 15 2-16 10-24 (163)
392 PRK14493 putative bifunctional 76.5 2.4 5.3E-05 37.3 3.0 26 2-30 10-35 (274)
393 TIGR00064 ftsY signal recognit 76.5 2.7 5.8E-05 37.0 3.2 16 1-16 80-95 (272)
394 KOG0733 Nuclear AAA ATPase (VC 76.4 2.8 6E-05 40.7 3.4 16 2-17 232-247 (802)
395 PF00071 Ras: Ras family; Int 76.4 1.6 3.4E-05 34.6 1.6 15 2-16 8-22 (162)
396 PRK13886 conjugal transfer pro 76.3 1.6 3.4E-05 37.5 1.7 14 2-15 12-25 (241)
397 TIGR00231 small_GTP small GTP- 76.3 1.8 3.9E-05 33.5 2.0 17 1-17 9-25 (161)
398 PRK08533 flagellar accessory p 76.2 5.6 0.00012 34.0 5.1 39 2-44 33-71 (230)
399 PRK09280 F0F1 ATP synthase sub 76.2 3.8 8.2E-05 38.8 4.3 45 2-47 153-198 (463)
400 cd01918 HprK_C HprK/P, the bif 76.2 1.6 3.5E-05 34.4 1.6 14 2-15 23-36 (149)
401 COG4608 AppF ABC-type oligopep 76.1 1.6 3.4E-05 37.9 1.6 14 2-15 48-61 (268)
402 smart00175 RAB Rab subfamily o 76.0 1.7 3.7E-05 34.3 1.8 15 2-16 9-23 (164)
403 cd04120 Rab12 Rab12 subfamily. 76.0 1.7 3.7E-05 36.3 1.8 15 2-16 9-23 (202)
404 cd04155 Arl3 Arl3 subfamily. 76.0 1.7 3.7E-05 34.8 1.8 15 2-16 23-37 (173)
405 TIGR02239 recomb_RAD51 DNA rep 76.0 3.3 7.2E-05 37.3 3.8 39 2-40 105-147 (316)
406 PHA03134 thymidine kinase; Pro 75.9 1.5 3.3E-05 39.4 1.5 13 3-15 23-35 (340)
407 cd00882 Ras_like_GTPase Ras-li 75.9 1.8 3.8E-05 33.2 1.8 16 2-17 5-20 (157)
408 TIGR03689 pup_AAA proteasome A 75.8 2.4 5.2E-05 40.7 2.9 15 2-16 225-239 (512)
409 cd01121 Sms Sms (bacterial rad 75.8 2.9 6.4E-05 38.5 3.4 30 2-33 91-120 (372)
410 COG0645 Predicted kinase [Gene 75.8 1.7 3.7E-05 34.9 1.6 14 2-15 10-23 (170)
411 PF00406 ADK: Adenylate kinase 75.7 1.7 3.7E-05 34.3 1.7 15 2-16 5-19 (151)
412 PLN02348 phosphoribulokinase 75.6 1.6 3.4E-05 40.3 1.5 14 2-15 58-71 (395)
413 PF00154 RecA: recA bacterial 75.5 4.3 9.3E-05 36.5 4.3 35 2-38 62-96 (322)
414 cd04137 RheB Rheb (Ras Homolog 75.5 1.7 3.8E-05 35.1 1.7 15 2-16 10-24 (180)
415 cd02026 PRK Phosphoribulokinas 75.4 1.6 3.5E-05 38.3 1.6 14 2-15 8-21 (273)
416 PF13481 AAA_25: AAA domain; P 75.4 4.3 9.3E-05 33.3 4.1 33 2-34 41-81 (193)
417 PRK14527 adenylate kinase; Pro 75.4 1.7 3.7E-05 35.8 1.7 15 2-16 15-29 (191)
418 cd01864 Rab19 Rab19 subfamily. 75.4 1.8 3.9E-05 34.5 1.7 14 2-15 12-25 (165)
419 TIGR03881 KaiC_arch_4 KaiC dom 75.3 3.3 7.2E-05 35.2 3.5 31 2-34 29-59 (229)
420 cd03255 ABC_MJ0796_Lo1CDE_FtsE 75.2 1.8 3.8E-05 36.5 1.7 25 2-29 39-63 (218)
421 TIGR00347 bioD dethiobiotin sy 75.2 2.7 5.9E-05 33.7 2.8 25 2-28 7-31 (166)
422 PRK08006 replicative DNA helic 75.1 4.6 0.0001 38.6 4.7 46 2-50 233-278 (471)
423 PRK04195 replication factor C 75.1 1.6 3.4E-05 42.0 1.5 15 2-16 48-62 (482)
424 COG0593 DnaA ATPase involved i 75.1 11 0.00023 35.1 6.8 26 2-29 122-147 (408)
425 cd03225 ABC_cobalt_CbiO_domain 75.0 1.8 3.9E-05 36.3 1.7 15 2-16 36-50 (211)
426 PRK13765 ATP-dependent proteas 74.9 2.9 6.4E-05 41.4 3.3 49 2-52 59-107 (637)
427 smart00367 LRR_CC Leucine-rich 74.8 2.3 5.1E-05 22.2 1.5 15 305-319 2-16 (26)
428 cd01134 V_A-ATPase_A V/A-type 74.8 5 0.00011 36.5 4.5 40 2-45 166-206 (369)
429 cd03229 ABC_Class3 This class 74.8 1.9 4.1E-05 35.1 1.7 14 2-15 35-48 (178)
430 PRK08760 replicative DNA helic 74.8 5 0.00011 38.4 4.8 45 2-49 238-282 (476)
431 PRK02496 adk adenylate kinase; 74.8 1.8 4E-05 35.4 1.7 15 1-15 9-23 (184)
432 PRK05439 pantothenate kinase; 74.7 1.8 3.9E-05 38.8 1.7 14 2-15 95-108 (311)
433 cd00154 Rab Rab family. Rab G 74.7 2 4.4E-05 33.4 1.9 16 2-17 9-24 (159)
434 cd01860 Rab5_related Rab5-rela 74.7 2 4.3E-05 34.0 1.8 16 2-17 10-25 (163)
435 PRK12402 replication factor C 74.6 1.7 3.6E-05 39.4 1.5 14 2-15 45-58 (337)
436 PRK05636 replicative DNA helic 74.6 4.4 9.6E-05 39.0 4.4 46 2-50 274-319 (505)
437 PLN02200 adenylate kinase fami 74.4 1.9 4E-05 37.0 1.7 15 1-15 51-65 (234)
438 cd00157 Rho Rho (Ras homology) 74.4 2 4.4E-05 34.2 1.8 15 2-16 9-23 (171)
439 cd01894 EngA1 EngA1 subfamily. 74.3 2 4.4E-05 33.5 1.8 15 2-16 6-20 (157)
440 cd04101 RabL4 RabL4 (Rab-like4 74.3 2.1 4.5E-05 34.0 1.9 14 2-15 9-22 (164)
441 PF13479 AAA_24: AAA domain 74.2 1.6 3.4E-05 36.9 1.2 12 2-13 12-23 (213)
442 PTZ00369 Ras-like protein; Pro 74.2 2 4.4E-05 35.2 1.8 15 2-16 14-28 (189)
443 cd00879 Sar1 Sar1 subfamily. 74.1 2.1 4.6E-05 35.0 1.9 15 2-16 28-42 (190)
444 PHA02544 44 clamp loader, smal 74.0 1.8 3.9E-05 38.9 1.5 14 2-15 52-65 (316)
445 KOG3354 Gluconate kinase [Carb 74.0 2 4.4E-05 33.9 1.6 17 2-20 21-37 (191)
446 PF01637 Arch_ATPase: Archaeal 73.9 1.9 4E-05 36.4 1.6 14 2-15 29-42 (234)
447 cd04161 Arl2l1_Arl13_like Arl2 73.9 2.1 4.6E-05 34.3 1.8 15 2-16 8-22 (167)
448 cd04123 Rab21 Rab21 subfamily. 73.9 2.1 4.5E-05 33.7 1.8 15 2-16 9-23 (162)
449 PRK04220 2-phosphoglycerate ki 73.9 1.9 4.1E-05 38.3 1.6 14 2-15 101-114 (301)
450 cd04108 Rab36_Rab34 Rab34/Rab3 73.9 2.1 4.6E-05 34.4 1.8 15 2-16 9-23 (170)
451 COG0455 flhG Antiactivator of 73.9 1.9 4E-05 37.7 1.5 27 2-30 12-39 (262)
452 TIGR03878 thermo_KaiC_2 KaiC d 73.8 3.3 7.1E-05 36.1 3.1 30 2-33 45-74 (259)
453 PRK13974 thymidylate kinase; P 73.8 6.3 0.00014 33.1 4.8 45 2-46 12-59 (212)
454 PHA03135 thymidine kinase; Pro 73.8 1.8 4E-05 38.9 1.5 13 3-15 20-32 (343)
455 cd04162 Arl9_Arfrp2_like Arl9/ 73.8 2.1 4.6E-05 34.2 1.8 15 2-16 8-22 (164)
456 TIGR00960 3a0501s02 Type II (G 73.7 2 4.4E-05 36.1 1.7 26 2-30 38-63 (216)
457 KOG0739 AAA+-type ATPase [Post 73.7 11 0.00023 33.5 6.0 15 2-16 175-189 (439)
458 PRK14490 putative bifunctional 73.6 3.4 7.3E-05 38.1 3.3 20 2-23 14-33 (369)
459 cd00878 Arf_Arl Arf (ADP-ribos 73.6 2.2 4.8E-05 33.6 1.9 16 2-17 8-23 (158)
460 PRK14531 adenylate kinase; Pro 73.6 2 4.4E-05 35.1 1.7 15 1-15 10-24 (183)
461 PHA02244 ATPase-like protein 73.5 2 4.2E-05 39.4 1.6 14 2-15 128-141 (383)
462 TIGR00101 ureG urease accessor 73.5 5.2 0.00011 33.3 4.1 14 2-15 10-23 (199)
463 PRK14962 DNA polymerase III su 73.5 1.8 4E-05 41.2 1.5 46 65-114 175-221 (472)
464 cd02029 PRK_like Phosphoribulo 73.4 2 4.3E-05 37.5 1.5 14 2-15 8-21 (277)
465 cd03278 ABC_SMC_barmotin Barmo 73.4 2.1 4.6E-05 35.6 1.7 14 2-15 31-44 (197)
466 cd04141 Rit_Rin_Ric Rit/Rin/Ri 73.4 2.1 4.6E-05 34.6 1.7 14 2-15 11-24 (172)
467 cd04159 Arl10_like Arl10-like 73.3 2.2 4.7E-05 33.3 1.8 15 2-16 8-22 (159)
468 cd03266 ABC_NatA_sodium_export 73.3 3.3 7.1E-05 34.9 2.9 26 2-30 40-65 (218)
469 TIGR01351 adk adenylate kinase 73.1 2.1 4.5E-05 36.0 1.7 15 1-15 7-21 (210)
470 TIGR03600 phage_DnaB phage rep 73.1 6.2 0.00013 37.1 5.0 46 2-50 203-248 (421)
471 PRK00279 adk adenylate kinase; 73.1 2.1 4.6E-05 36.1 1.7 15 1-15 8-22 (215)
472 smart00763 AAA_PrkA PrkA AAA d 73.0 2.4 5.2E-05 38.7 2.1 18 2-19 87-104 (361)
473 cd04163 Era Era subfamily. Er 72.9 2.3 5E-05 33.4 1.8 15 2-16 12-26 (168)
474 PRK14956 DNA polymerase III su 72.9 2 4.3E-05 40.8 1.6 15 2-16 49-63 (484)
475 cd01874 Cdc42 Cdc42 subfamily. 72.9 2.3 5E-05 34.4 1.8 15 2-16 10-24 (175)
476 PLN02796 D-glycerate 3-kinase 72.8 2 4.4E-05 38.9 1.6 14 2-15 109-122 (347)
477 cd02038 FleN-like FleN is a me 72.8 2.3 4.9E-05 33.1 1.7 15 2-16 9-23 (139)
478 cd03269 ABC_putative_ATPase Th 72.8 2.2 4.8E-05 35.7 1.8 26 2-30 35-60 (210)
479 cd04158 ARD1 ARD1 subfamily. 72.7 2.3 5E-05 34.1 1.8 15 2-16 8-22 (169)
480 PRK08356 hypothetical protein; 72.7 2.3 5E-05 35.2 1.8 13 1-13 13-25 (195)
481 cd04150 Arf1_5_like Arf1-Arf5- 72.7 2.2 4.8E-05 33.9 1.7 14 2-15 9-22 (159)
482 PRK05595 replicative DNA helic 72.7 6.3 0.00014 37.4 4.9 47 2-51 210-256 (444)
483 PRK05342 clpX ATP-dependent pr 72.7 2.2 4.8E-05 39.9 1.8 14 2-15 117-130 (412)
484 TIGR02782 TrbB_P P-type conjug 72.7 3.7 7.9E-05 36.7 3.2 14 2-15 141-154 (299)
485 TIGR01166 cbiO cobalt transpor 72.6 2.3 4.9E-05 35.0 1.7 25 2-29 27-51 (190)
486 PRK14957 DNA polymerase III su 72.6 2.1 4.5E-05 41.6 1.7 14 2-15 47-60 (546)
487 PHA03133 thymidine kinase; Pro 72.5 2.1 4.5E-05 38.8 1.5 13 3-15 50-62 (368)
488 PHA03138 thymidine kinase; Pro 72.5 3.3 7.1E-05 37.3 2.7 13 3-15 22-34 (340)
489 cd04110 Rab35 Rab35 subfamily. 72.4 2.3 5.1E-05 35.3 1.8 15 2-16 15-29 (199)
490 cd03293 ABC_NrtD_SsuB_transpor 72.4 2.3 4.9E-05 36.0 1.7 25 2-29 39-63 (220)
491 TIGR01007 eps_fam capsular exo 72.4 4 8.8E-05 34.0 3.2 28 2-31 27-54 (204)
492 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 72.4 2.4 5.2E-05 33.8 1.8 15 2-16 11-25 (166)
493 PRK10463 hydrogenase nickel in 72.3 4.4 9.5E-05 35.8 3.5 20 2-23 113-132 (290)
494 PRK13541 cytochrome c biogenes 72.3 2.3 5.1E-05 35.2 1.7 26 2-30 35-60 (195)
495 cd01876 YihA_EngB The YihA (En 72.2 2.3 5E-05 33.5 1.7 14 2-15 8-21 (170)
496 PRK06645 DNA polymerase III su 72.2 2 4.4E-05 41.2 1.5 15 2-16 52-66 (507)
497 cd00876 Ras Ras family. The R 72.2 2.5 5.4E-05 33.1 1.9 15 2-16 8-22 (160)
498 cd04135 Tc10 TC10 subfamily. 72.2 2.4 5.2E-05 34.0 1.8 15 2-16 9-23 (174)
499 cd04144 Ras2 Ras2 subfamily. 72.2 2.4 5.1E-05 34.9 1.8 14 2-15 8-21 (190)
500 cd03301 ABC_MalK_N The N-termi 72.2 2.3 5.1E-05 35.6 1.8 25 2-29 35-59 (213)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=8.2e-55 Score=428.97 Aligned_cols=336 Identities=29% Similarity=0.457 Sum_probs=250.1
Q ss_pred CCCCcHHHHHHHHhcchh-hhcCCCeeEEEEcCCCCCHHHHHHHHHHhccccccCCCCh--hhhhcC-------------
Q 043181 1 MGGVGKTTLAQLLCNNVK-VKNRFHLETWVYLFEDFDVFRITKTMLQSISTEAVRDNDL--NLLQLK------------- 64 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~-~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~~~~~~~~~~--~~l~~~------------- 64 (348)
|||+||||||++++|+.. ++++||.++||.||++++...++++|+..++.......+. +.++.+
T Consensus 187 MGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllv 266 (889)
T KOG4658|consen 187 MGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLV 266 (889)
T ss_pred CCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEE
Confidence 899999999999999988 9999999999999999999999999999887643322221 111111
Q ss_pred -------------------------------------------------CCChHHHHHHHHHhhcCCCCCCcChhHHHHH
Q 043181 65 -------------------------------------------------KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIG 95 (348)
Q Consensus 65 -------------------------------------------------~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~ 95 (348)
+|+.+|||+||.+.||..... .++.++++|
T Consensus 267 LDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~-~~~~i~~la 345 (889)
T KOG4658|consen 267 LDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLG-SHPDIEELA 345 (889)
T ss_pred EecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhcccccc-ccccHHHHH
Confidence 899999999999999877432 344599999
Q ss_pred HHHHHHcCCCchhHHHHHhhhcCCCCchhHHHHhcCcc-------------------cccccCchHHHHHHhHhccCCCC
Q 043181 96 EKIVKKCNGLPLASEILGGLLHGKVDCIDWEDVLNSKA-------------------ISCHYLLPHLKRCFSYCSIFPED 156 (348)
Q Consensus 96 ~~i~~~c~GlPLal~~ig~~L~~~~~~~~w~~~l~~~~-------------------~s~~~L~~~~k~~fl~~~~fp~~ 156 (348)
++|+++|+|+|||+.++|+.|+.+.+.++|+++.+.+. +||+.||+++|.||+|||.||+|
T Consensus 346 k~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED 425 (889)
T KOG4658|consen 346 KEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPED 425 (889)
T ss_pred HHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcc
Confidence 99999999999999999999999998999999998653 99999999999999999999999
Q ss_pred CccchhHHHHHHHHcCCCccCCCCchHHHHHHHHHHHHHhCCccceeC--CCcceEeechHHHHHHHhhcc-----ccc-
Q 043181 157 CKFEEEELILLRMAQGFLRHENSEKPVEQLGHQYSGELQSRSHFRQSS--SNVSRFAMHDFINDLAHKYDG-----IKR- 228 (348)
Q Consensus 157 ~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~--~~~~~~~mh~li~~~~~~~~~-----~~~- 228 (348)
+.|+++.|+.+|+|+||+.+......+++.|.+++++|++++|+.... ++...|.|||+||+||..... .++
T Consensus 426 ~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~ 505 (889)
T KOG4658|consen 426 YEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQ 505 (889)
T ss_pred cccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccce
Confidence 999999999999999999997778899999999999999999999765 456789999999999995533 221
Q ss_pred ----------cccccCccccceeeeccCcccccccccchhHHHHhhhhccccee--------eCC-ccccCCCCccEEec
Q 043181 229 ----------FEAIDGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY--------ELP-SEIGDLKILRYLNF 289 (348)
Q Consensus 229 ----------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------~~p-~~~~~l~~L~~l~l 289 (348)
.+...+....|......+..........+ ++++.|-+ .++ ..+..|+.|+.||+
T Consensus 506 iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~-------~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDL 578 (889)
T KOG4658|consen 506 IVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSEN-------PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDL 578 (889)
T ss_pred EEECCcCccccccccchhheeEEEEeccchhhccCCCCC-------CccceEEEeecchhhhhcCHHHHhhCcceEEEEC
Confidence 11122223333333332221100000000 01111111 111 22555666777777
Q ss_pred CCCC-CccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCC
Q 043181 290 SDAQ-VETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESL 345 (348)
Q Consensus 290 ~~~~-~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~l 345 (348)
++|. +.++|.+|+.|-+|++|++++ +.+.+||.++++|.+|.+||+..+..+..+
T Consensus 579 s~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~ 634 (889)
T KOG4658|consen 579 SGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESI 634 (889)
T ss_pred CCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccc
Confidence 6554 566777777777777777766 666677777777777777776666555444
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.1e-36 Score=314.54 Aligned_cols=261 Identities=23% Similarity=0.274 Sum_probs=189.0
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHHHhhhcCCCCchhHHHHhcCcc-----------
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEILGGLLHGKVDCIDWEDVLNSKA----------- 133 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~~~~~w~~~l~~~~----------- 133 (348)
.+++++||+||++.||+... +.+++.+++++|+++|+|+||||+++|+.|+++ +..+|+++++++.
T Consensus 350 ~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~~~~I~~~L 426 (1153)
T PLN03210 350 LPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGLDGKIEKTL 426 (1153)
T ss_pred CCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCccHHHHHHH
Confidence 78999999999999998764 456789999999999999999999999999998 6789998886643
Q ss_pred -cccccCch-HHHHHHhHhccCCCCCccchhHHHHHHHHcCCCccCCCCchHHHHHHHHHHHHHhCCccceeCCCcceEe
Q 043181 134 -ISCHYLLP-HLKRCFSYCSIFPEDCKFEEEELILLRMAQGFLRHENSEKPVEQLGHQYSGELQSRSHFRQSSSNVSRFA 211 (348)
Q Consensus 134 -~s~~~L~~-~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~ 211 (348)
+||+.|++ ..|.||+++|+||.+..+ ..+..|.+.+.... ...+..|++++|++... ..+.
T Consensus 427 ~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~~-----------~~~l~~L~~ksLi~~~~---~~~~ 489 (1153)
T PLN03210 427 RVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLDV-----------NIGLKNLVDKSLIHVRE---DIVE 489 (1153)
T ss_pred HHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCCc-----------hhChHHHHhcCCEEEcC---CeEE
Confidence 99999987 599999999999988754 34666777654432 12388999999998754 3699
Q ss_pred echHHHHHHHhhccccc---------------------------cc-----------------cccCccccceeeeccCc
Q 043181 212 MHDFINDLAHKYDGIKR---------------------------FE-----------------AIDGVKHLRTSLPISSR 247 (348)
Q Consensus 212 mh~li~~~~~~~~~~~~---------------------------~~-----------------~~~~~~~l~~l~~~~~~ 247 (348)
|||++|+||+++...+. +. .+..|.+|+.+......
T Consensus 490 MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~ 569 (1153)
T PLN03210 490 MHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKK 569 (1153)
T ss_pred hhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccc
Confidence 99999999996532110 00 12345666665543221
Q ss_pred ccc--ccc-ccchhHHHHh----------------------hhhccccee------eCCccccCCCCccEEecCCCC-Cc
Q 043181 248 VVW--DYS-HLNRNVLFDL----------------------SLKLQCFRY------ELPSEIGDLKILRYLNFSDAQ-VE 295 (348)
Q Consensus 248 ~~~--~~~-~~~~~~~~~~----------------------~~~~~~l~~------~~p~~~~~l~~L~~l~l~~~~-~~ 295 (348)
... ... .+. ..+..+ ..++..|.+ .+|..+..+++|++++++++. +.
T Consensus 570 ~~~~~~~~~~lp-~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~ 648 (1153)
T PLN03210 570 WDQKKEVRWHLP-EGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK 648 (1153)
T ss_pred ccccccceeecC-cchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC
Confidence 000 000 000 000000 112222222 456677788888889888765 66
Q ss_pred cCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 296 TSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 296 ~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+|. ++.+++|+.|++.+|+.+.++|.+|++|++|+.|++++|..++.+|.
T Consensus 649 ~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~ 699 (1153)
T PLN03210 649 EIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPT 699 (1153)
T ss_pred cCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCC
Confidence 6764 88888899999988888888998888888888888888888888774
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=1.2e-29 Score=225.81 Aligned_cols=176 Identities=34% Similarity=0.616 Sum_probs=138.8
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhccccccCC---CChhhhhc--------------
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSISTEAVRD---NDLNLLQL-------------- 63 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~~~~~~~---~~~~~l~~-------------- 63 (348)
|||+||||||+++|++.+++.+|++++|+.++...+...+++.|+.+++...... .+.+....
T Consensus 27 ~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlV 106 (287)
T PF00931_consen 27 MGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLV 106 (287)
T ss_dssp STTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEE
T ss_pred CCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccceee
Confidence 7999999999999997779999999999999999888999999999987663211 11111000
Q ss_pred ------------------------------------------------CCCChHHHHHHHHHhhcCCCCCCcChhHHHHH
Q 043181 64 ------------------------------------------------KKWSDDDCLCVFTQRSSRRTDFNMHMHLKEIG 95 (348)
Q Consensus 64 ------------------------------------------------~~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~ 95 (348)
.+|+.++|++||.+.++... ....+.+.+.+
T Consensus 107 lDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~ 185 (287)
T PF00931_consen 107 LDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKE-SESPEDLEDLA 185 (287)
T ss_dssp EEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS-----TTSCTHH
T ss_pred eeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 08999999999999997765 12334456789
Q ss_pred HHHHHHcCCCchhHHHHHhhhcCCCCchhHHHHhcCcc------------------cccccCchHHHHHHhHhccCCCCC
Q 043181 96 EKIVKKCNGLPLASEILGGLLHGKVDCIDWEDVLNSKA------------------ISCHYLLPHLKRCFSYCSIFPEDC 157 (348)
Q Consensus 96 ~~i~~~c~GlPLal~~ig~~L~~~~~~~~w~~~l~~~~------------------~s~~~L~~~~k~~fl~~~~fp~~~ 157 (348)
++|++.|+|+|||++++|+.|+.+.+..+|+.+++... .||+.|+++.|+||+|||+||+++
T Consensus 186 ~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~ 265 (287)
T PF00931_consen 186 KEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGV 265 (287)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCc
Confidence 99999999999999999999977657788998875422 999999999999999999999999
Q ss_pred ccchhHHHHHHHHcCCCccC
Q 043181 158 KFEEEELILLRMAQGFLRHE 177 (348)
Q Consensus 158 ~i~~~~li~~w~a~g~~~~~ 177 (348)
.|+++.++++|+++|++.+.
T Consensus 266 ~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 266 PIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp -EEHHHHHHHHTT-HHTC--
T ss_pred eECHHHHHHHHHHCCCCccc
Confidence 99999999999999998763
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.80 E-value=8.8e-10 Score=86.66 Aligned_cols=72 Identities=35% Similarity=0.448 Sum_probs=57.6
Q ss_pred CCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
+|..+..|.-|+-|.++.|.++.+|+.+++|++||.|.++. +.+-++|.+++.|++|+.|.+.+| ++.-+|+
T Consensus 119 lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgn-rl~vlpp 190 (264)
T KOG0617|consen 119 LPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGN-RLTVLPP 190 (264)
T ss_pred CCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccc-eeeecCh
Confidence 44444444444444445555666799999999999999999 789999999999999999999999 8888886
No 5
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.50 E-value=3.6e-06 Score=86.91 Aligned_cols=135 Identities=10% Similarity=0.147 Sum_probs=87.6
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHHHhhhcCCCC-ch--hHH-------HHhcCcc-
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEILGGLLHGKVD-CI--DWE-------DVLNSKA- 133 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~~-~~--~w~-------~~l~~~~- 133 (348)
+|+.+|+.++|.......- + .+...++.+.|+|+|+++..++..+..... .. .|. .+.+.+.
T Consensus 185 ~f~~~e~~~ll~~~~~~~~----~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 257 (903)
T PRK04841 185 AFDHQEAQQFFDQRLSSPI----E---AAESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHLSDYLVE 257 (903)
T ss_pred CCCHHHHHHHHHhccCCCC----C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHH
Confidence 6788888888876543221 1 245788999999999999998877755432 11 111 0111111
Q ss_pred cccccCchHHHHHHhHhccCCCCCccchhHHHHHHHHcCCCccCCCCchHHHHHHHHHHHHHhCCccc-eeCCCcceEee
Q 043181 134 ISCHYLLPHLKRCFSYCSIFPEDCKFEEEELILLRMAQGFLRHENSEKPVEQLGHQYSGELQSRSHFR-QSSSNVSRFAM 212 (348)
Q Consensus 134 ~s~~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~-~~~~~~~~~~m 212 (348)
..++.||+..+..++.+|+++ .++....- .+.+. ..+.+.+.+|.+.+++. ..++....|+.
T Consensus 258 ~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~------~l~~~--------~~~~~~L~~l~~~~l~~~~~~~~~~~yr~ 320 (903)
T PRK04841 258 EVLDNVDLETRHFLLRCSVLR---SMNDALIV------RVTGE--------ENGQMRLEELERQGLFIQRMDDSGEWFRY 320 (903)
T ss_pred HHHhcCCHHHHHHHHHhcccc---cCCHHHHH------HHcCC--------CcHHHHHHHHHHCCCeeEeecCCCCEEeh
Confidence 336889999999999999987 23322211 11111 22467789999999965 34444457899
Q ss_pred chHHHHHHHhh
Q 043181 213 HDFINDLAHKY 223 (348)
Q Consensus 213 h~li~~~~~~~ 223 (348)
|++++++.+..
T Consensus 321 H~L~r~~l~~~ 331 (903)
T PRK04841 321 HPLFASFLRHR 331 (903)
T ss_pred hHHHHHHHHHH
Confidence 99999998843
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.45 E-value=3.9e-08 Score=77.50 Aligned_cols=72 Identities=28% Similarity=0.406 Sum_probs=42.2
Q ss_pred CCccccCCCCccEEecCCCCCc--cCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVE--TSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~--~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
+|..++.++-|+.||+.+|.+. .+|..+--++-|+.|-|++ +...-+|+.+++|++|+.|.+++| .+-++|.
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdn-dll~lpk 167 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDN-DLLSLPK 167 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccC-chhhCcH
Confidence 4444444444444444444433 2444444444444444444 455677888999999999999988 6666763
No 7
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=1.8e-07 Score=62.23 Aligned_cols=57 Identities=37% Similarity=0.441 Sum_probs=51.4
Q ss_pred CCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCC
Q 043181 282 KILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVT 339 (348)
Q Consensus 282 ~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~ 339 (348)
++|++|++++|+++.+|+ .+..+++|++|++++ +.+..+|+ .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 478999999999999985 678999999999997 78889987 5799999999999998
No 8
>PLN03150 hypothetical protein; Provisional
Probab=98.26 E-value=1.2e-06 Score=86.12 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=65.2
Q ss_pred eCCccccCCCCccEEecCCCCCc-cCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVE-TSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+|..++.+.+|+.|+|++|.+. .+|+.++.+++|+.|+|++|...+.+|..+++|++|++|++++|...+.+|.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~ 508 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPA 508 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCCh
Confidence 57888999999999999999987 7898999999999999999766678999999999999999999866667764
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.22 E-value=7.4e-07 Score=79.34 Aligned_cols=72 Identities=39% Similarity=0.531 Sum_probs=60.6
Q ss_pred eCCccccCCCCccEEecCCCCCccCch-----------------------h-hhccCCCCEeeccCCCccchhHHHhccc
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPE-----------------------S-VCKLHNLETLKLQNCNRLQKLFADIGNL 328 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~-----------------------~-~~~l~~L~~L~l~~c~~l~~lp~~i~~l 328 (348)
.+|..++.+..|+.++++.|++..+|+ + +.++.+|.+||+.+ +.+..+|+.+|++
T Consensus 449 ~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~Lgnm 527 (565)
T KOG0472|consen 449 DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNM 527 (565)
T ss_pred hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccc
Confidence 788888999889999998887665544 3 66788999999998 8999999999999
Q ss_pred ccCcEeeccCCCCCCCCCC
Q 043181 329 NNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 329 ~~L~~L~l~~~~~l~~lp~ 347 (348)
++|++|.+.+| +++ .|+
T Consensus 528 tnL~hLeL~gN-pfr-~Pr 544 (565)
T KOG0472|consen 528 TNLRHLELDGN-PFR-QPR 544 (565)
T ss_pred cceeEEEecCC-ccC-CCH
Confidence 99999999999 555 553
No 10
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1.1e-06 Score=53.94 Aligned_cols=39 Identities=36% Similarity=0.520 Sum_probs=25.3
Q ss_pred CccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhH
Q 043181 283 ILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLF 322 (348)
Q Consensus 283 ~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp 322 (348)
+|++|++++|.++.+|+.++++++|++|++++ +.+..+|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSN-NPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETS-SCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecC-CCCCCCc
Confidence 56777777777777776677777777777776 3555554
No 11
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2e-06 Score=52.70 Aligned_cols=42 Identities=33% Similarity=0.510 Sum_probs=36.2
Q ss_pred CCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCCC
Q 043181 305 HNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLESL 348 (348)
Q Consensus 305 ~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~~ 348 (348)
++|++|++++ +.+..+|+.+++|++|+.|++++| .+.++|++
T Consensus 1 ~~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~l 42 (44)
T PF12799_consen 1 KNLEELDLSN-NQITDLPPELSNLPNLETLNLSNN-PISDISPL 42 (44)
T ss_dssp TT-SEEEETS-SS-SSHGGHGTTCTTSSEEEETSS-CCSBEGGG
T ss_pred CcceEEEccC-CCCcccCchHhCCCCCCEEEecCC-CCCCCcCC
Confidence 4799999999 789999999999999999999999 78888764
No 12
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.14 E-value=2.5e-06 Score=88.74 Aligned_cols=74 Identities=22% Similarity=0.363 Sum_probs=49.6
Q ss_pred eCCccccCCCCccEEecCCCCCc-cCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVE-TSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.+|..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|...+.+|
T Consensus 179 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 179 KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC
Confidence 45666677777777777777654 467777777777777777755555677777777777777777774333444
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.14 E-value=4.5e-06 Score=87.87 Aligned_cols=73 Identities=30% Similarity=0.429 Sum_probs=64.7
Q ss_pred eCCccccCCCCccEEecCCCC-CccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQ-VETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~-~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+| .++.+++|++|++++|. +.++|.+++.+++|+.|++++|+.++.+|..+ ++++|+.|++++|..++.+|.
T Consensus 649 ~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~ 722 (1153)
T PLN03210 649 EIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722 (1153)
T ss_pred cCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc
Confidence 344 57889999999999976 77899999999999999999999999999876 789999999999988888774
No 14
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.08 E-value=1.5e-06 Score=87.66 Aligned_cols=104 Identities=27% Similarity=0.302 Sum_probs=82.6
Q ss_pred ccccCccccceeeeccCcccccccccchhHHHHhhhhccccee----------eCCccccCCCCccEEecCCCCCccCch
Q 043181 230 EAIDGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY----------ELPSEIGDLKILRYLNFSDAQVETSPE 299 (348)
Q Consensus 230 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~p~~~~~l~~L~~l~l~~~~~~~lp~ 299 (348)
..-...+.+++|+...+.. ........++..++.|+| ++|.+++.|.+|+||+++++.++.+|.
T Consensus 539 ~~~~~~~~L~tLll~~n~~------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~ 612 (889)
T KOG4658|consen 539 AGSSENPKLRTLLLQRNSD------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPS 612 (889)
T ss_pred cCCCCCCccceEEEeecch------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccch
Confidence 3334455799998877642 112233344666777777 699999999999999999999999999
Q ss_pred hhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 300 SVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 300 ~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
.+++|..|.+|++..+..+..+|..+..|++||+|.+...
T Consensus 613 ~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 613 GLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred HHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 9999999999999997778888776666999999998654
No 15
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.04 E-value=8.4e-07 Score=83.27 Aligned_cols=66 Identities=35% Similarity=0.390 Sum_probs=35.2
Q ss_pred eCCccccCCCCccEEecCCCCCccCchhh-hccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPESV-CKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~~~-~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
+.|..+..-+++-.|+||+|+|+++|.++ -+|..|-+|||++ +.+..||+.+..|..|+.|.|++|
T Consensus 117 EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 117 EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCC
Confidence 34555555555555555555555555433 3455555555555 455555555555555555555555
No 16
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.02 E-value=1e-05 Score=84.28 Aligned_cols=75 Identities=25% Similarity=0.333 Sum_probs=66.1
Q ss_pred eCCccccCCCCccEEecCCCCCc-cCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVE-TSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+|..++.+++|++|++++|.++ .+|..++.+++|+.|++++|...+.+|..+.++++|++|++++|...+.+|.
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 67888899999999999999987 5788899999999999999877778999999999999999999977777774
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=97.95 E-value=1.7e-06 Score=77.12 Aligned_cols=68 Identities=34% Similarity=0.505 Sum_probs=57.3
Q ss_pred eCCcccc-CCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCC
Q 043181 273 ELPSEIG-DLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLE 343 (348)
Q Consensus 273 ~~p~~~~-~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~ 343 (348)
.+|...+ ++.++..||++.|++++.|..++.|.+|++||+++ +.+..+|.++|+| -|+.|-+.|| .++
T Consensus 242 ~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGN-Plr 310 (565)
T KOG0472|consen 242 MLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGN-PLR 310 (565)
T ss_pred hhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCC-chH
Confidence 3566655 78889999999999999999999999999999998 7899999999998 6888888888 443
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.94 E-value=1.6e-06 Score=81.49 Aligned_cols=66 Identities=29% Similarity=0.313 Sum_probs=50.7
Q ss_pred eCCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
.+|+.+-++.+|+.|+||+|.|+++.-.++...+|++|+++. +++..||..+++|++|+.|.+++|
T Consensus 236 ~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 236 IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccC
Confidence 456666677777777777777777776777777788888877 778888888888888888887776
No 19
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.93 E-value=0.00029 Score=68.93 Aligned_cols=195 Identities=19% Similarity=0.223 Sum_probs=128.9
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCeeEEEEcCC-CCCHHHHHHHHHHhccccccCCCChhh-h-hcC-------------
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHLETWVYLFE-DFDVFRITKTMLQSISTEAVRDNDLNL-L-QLK------------- 64 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~l~~~il~~l~~~~~~~~~~~~-l-~~~------------- 64 (348)
.+|.|||||+.+... +.... ..+.|++..+ +.|+.+..+.++..++.-.....+..+ + ++.
T Consensus 45 PAGfGKttl~aq~~~--~~~~~-~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~ 121 (894)
T COG2909 45 PAGFGKTTLLAQWRE--LAADG-AAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLL 121 (894)
T ss_pred CCCCcHHHHHHHHHH--hcCcc-cceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHH
Confidence 379999999999986 22221 3689999854 457888888888877643222111110 0 000
Q ss_pred -----------------------------------------------------------------------CCChHHHHH
Q 043181 65 -----------------------------------------------------------------------KWSDDDCLC 73 (348)
Q Consensus 65 -----------------------------------------------------------------------~l~~~~a~~ 73 (348)
.++.+|+.+
T Consensus 122 ~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~ 201 (894)
T COG2909 122 NELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAA 201 (894)
T ss_pred HHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHH
Confidence 689999999
Q ss_pred HHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHHHhhhcCCCCchhHHHHhc---Cc------ccccccCchHHH
Q 043181 74 VFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEILGGLLHGKVDCIDWEDVLN---SK------AISCHYLLPHLK 144 (348)
Q Consensus 74 Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~~~~~w~~~l~---~~------~~s~~~L~~~~k 144 (348)
+|.......-+ ...++.+.+..+|++-|+..++=.+++..+.+.-...+. +. .--++.||++.|
T Consensus 202 fl~~~~~l~Ld-------~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l~dYL~eeVld~Lp~~l~ 274 (894)
T COG2909 202 FLNDRGSLPLD-------AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHLSDYLVEEVLDRLPPELR 274 (894)
T ss_pred HHHHcCCCCCC-------hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHHHHHHHHHHHhcCCHHHH
Confidence 99987522221 245888999999999999999988884433222111111 00 045678999999
Q ss_pred HHHhHhccCCCCCccchhHHHHHHHHcCCCccCCCCchHHHHHHHHHHHHHhCCccc-eeCCCcceEeechHHHHHHHh
Q 043181 145 RCFSYCSIFPEDCKFEEEELILLRMAQGFLRHENSEKPVEQLGHQYSGELQSRSHFR-QSSSNVSRFAMHDFINDLAHK 222 (348)
Q Consensus 145 ~~fl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~-~~~~~~~~~~mh~li~~~~~~ 222 (348)
..++-+|+++.-. ..|...... ++.+...+++|..+++.- +.++...-|+.|.++.+|.+.
T Consensus 275 ~FLl~~svl~~f~----~eL~~~Ltg-------------~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~ 336 (894)
T COG2909 275 DFLLQTSVLSRFN----DELCNALTG-------------EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQ 336 (894)
T ss_pred HHHHHHHhHHHhh----HHHHHHHhc-------------CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHh
Confidence 9999988886421 222222111 234667799999998766 456667789999999999983
No 20
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.74 E-value=2.7e-05 Score=70.53 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=37.6
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCC--CHHHHHHHHH
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDF--DVFRITKTML 45 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~--~~~~l~~~il 45 (348)
.+|+||||||++||++.... +|+..+||.+.+.+ ++.++++.+.
T Consensus 177 ppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIl 222 (416)
T PRK09376 177 PPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVK 222 (416)
T ss_pred CCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhc
Confidence 37999999999999965554 89999999998887 7888888876
No 21
>PLN03150 hypothetical protein; Provisional
Probab=97.66 E-value=7.1e-05 Score=73.66 Aligned_cols=74 Identities=20% Similarity=0.294 Sum_probs=63.8
Q ss_pred eCCccccCCCCccEEecCCCCCc-cCchhhhccCCCCEeeccCCCccchhHHHhccc-ccCcEeeccCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVE-TSPESVCKLHNLETLKLQNCNRLQKLFADIGNL-NNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l-~~L~~L~l~~~~~l~~lp 346 (348)
.+|..++.+.+|+.|+|++|.+. .+|+.++++++|+.|+|++|...+.+|..++.+ .++..+++.+|..+...|
T Consensus 457 ~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 457 NIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred cCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 67888999999999999999987 699999999999999999977778999988764 367788888886665554
No 22
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.63 E-value=6.3e-05 Score=61.11 Aligned_cols=63 Identities=25% Similarity=0.326 Sum_probs=28.1
Q ss_pred cccCCCCccEEecCCCCCccCchhh-hccCCCCEeeccCCCccchhHH--HhcccccCcEeeccCCC
Q 043181 277 EIGDLKILRYLNFSDAQVETSPESV-CKLHNLETLKLQNCNRLQKLFA--DIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~~~lp~~~-~~l~~L~~L~l~~c~~l~~lp~--~i~~l~~L~~L~l~~~~ 340 (348)
.+..+.+|+.|++++|.++++++.+ ..+++|+.|.+++ +.+.++-. .+..+++|+.|++.+|+
T Consensus 59 ~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 59 GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence 5677888888888888888887655 3688888888887 66655532 35677888888888884
No 23
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.63 E-value=0.0022 Score=58.20 Aligned_cols=122 Identities=9% Similarity=0.019 Sum_probs=74.4
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHHHhhhc------CC--CCchhHHHHhcCccccc
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEILGGLLH------GK--VDCIDWEDVLNSKAISC 136 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~------~~--~~~~~w~~~l~~~~~s~ 136 (348)
+++.++..+++.+.+...+.. .. .+....|++.|+|.|-.+..+...+. +. -+.+.-..+++.....+
T Consensus 179 ~~~~~e~~~il~~~~~~~~~~-~~---~~~~~~ia~~~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~~~~~ 254 (328)
T PRK00080 179 FYTVEELEKIVKRSARILGVE-ID---EEGALEIARRSRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDMLGVDE 254 (328)
T ss_pred CCCHHHHHHHHHHHHHHcCCC-cC---HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCc
Confidence 889999999999887544322 22 35788999999999965544443221 11 12333444444455777
Q ss_pred ccCchHHHHHHh-HhccCCCCCccchhHHHHHHHHcCCCccCCCCchHHHHHHHHHH-HHHhCCcccee
Q 043181 137 HYLLPHLKRCFS-YCSIFPEDCKFEEEELILLRMAQGFLRHENSEKPVEQLGHQYSG-ELQSRSHFRQS 203 (348)
Q Consensus 137 ~~L~~~~k~~fl-~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~-~L~~~sll~~~ 203 (348)
..|++..+..+. ....|+.+ .+..+.+.... +. ....+++.++ .|++.+|++..
T Consensus 255 ~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g~------~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 255 LGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------GE------ERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred CCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------CC------CcchHHHHhhHHHHHcCCcccC
Confidence 788887777664 55566644 45555443221 11 1234555666 89999999854
No 24
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.62 E-value=7.9e-05 Score=64.31 Aligned_cols=45 Identities=22% Similarity=0.255 Sum_probs=37.5
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCC--CCHHHHHHHHHH
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHLETWVYLFED--FDVFRITKTMLQ 46 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~l~~~il~ 46 (348)
.+|+|||||++.+|++.... +|+..+|+.+.+. .++.++++.+..
T Consensus 24 ~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~ 70 (249)
T cd01128 24 PPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKG 70 (249)
T ss_pred CCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhcc
Confidence 37999999999999966554 8999999997666 789999988833
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.61 E-value=0.00066 Score=59.67 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=35.0
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHHHhhh
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEILGGLL 116 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L 116 (348)
+++.+|..+++..............--.+..+.|.+.++|.|..+..++..+
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 7888888888877653221100011124788899999999999998888665
No 26
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.52 E-value=0.0019 Score=57.92 Aligned_cols=123 Identities=11% Similarity=0.022 Sum_probs=74.1
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHHHhhh------cCCC--CchhHHHHhcCcccc
Q 043181 64 KKWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEILGGLL------HGKV--DCIDWEDVLNSKAIS 135 (348)
Q Consensus 64 ~~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L------~~~~--~~~~w~~~l~~~~~s 135 (348)
.+++.++..+++...+..... ..+ .+....|++.|+|.|-.+..+...+ .+.. +.+..+.++..+...
T Consensus 157 ~~l~~~e~~~il~~~~~~~~~-~~~---~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l~~~ 232 (305)
T TIGR00635 157 EFYTVEELAEIVSRSAGLLNV-EIE---PEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEMLMID 232 (305)
T ss_pred CCCCHHHHHHHHHHHHHHhCC-CcC---HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCC
Confidence 389999999999988754322 122 3567889999999996654444332 1111 344455555555577
Q ss_pred cccCchHHHHHHh-HhccCCCCCccchhHHHHHHHHcCCCccCCCCchHHHHHHHHHH-HHHhCCcccee
Q 043181 136 CHYLLPHLKRCFS-YCSIFPEDCKFEEEELILLRMAQGFLRHENSEKPVEQLGHQYSG-ELQSRSHFRQS 203 (348)
Q Consensus 136 ~~~L~~~~k~~fl-~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~-~L~~~sll~~~ 203 (348)
|..++...+..+. ..+.+..+ .+..+.+.... +. ....+...++ .|++++|+...
T Consensus 233 ~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l------g~------~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 233 ELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL------GE------DADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred CCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh------CC------CcchHHHhhhHHHHHcCCcccC
Confidence 8888887776665 34555432 34433332221 11 1244566677 69999999753
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.50 E-value=1.8e-05 Score=73.70 Aligned_cols=71 Identities=31% Similarity=0.471 Sum_probs=45.1
Q ss_pred eCCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.+|..++.|+ |+.|-+++|+++.+|+.++-++.|..||++. +.+..+|+.++.|.+|+.|++..| .+..+|
T Consensus 135 ~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrRn-~l~~lp 205 (722)
T KOG0532|consen 135 HLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRRN-HLEDLP 205 (722)
T ss_pred cCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhhh-hhhhCC
Confidence 3555555555 6666666666666666666666666666664 466666666666666666666666 455554
No 28
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.50 E-value=3.4e-05 Score=75.71 Aligned_cols=72 Identities=31% Similarity=0.408 Sum_probs=57.9
Q ss_pred CCccccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
..+-+-.+.+||.|+|++|++.++|.+ +.++..|+.|+|+| +.++.||.++.++.+|++|...+| .+..+|.
T Consensus 375 c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe 447 (1081)
T KOG0618|consen 375 CFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSN-QLLSFPE 447 (1081)
T ss_pred chhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCC-ceeechh
Confidence 344567888899999999998888865 47888888899998 788999988888888888877777 6666764
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.46 E-value=8.5e-05 Score=60.38 Aligned_cols=56 Identities=27% Similarity=0.310 Sum_probs=21.7
Q ss_pred CCCCccEEecCCCCCccCc--hhhhccCCCCEeeccCCCccchhHH----HhcccccCcEeec
Q 043181 280 DLKILRYLNFSDAQVETSP--ESVCKLHNLETLKLQNCNRLQKLFA----DIGNLNNLHHLDN 336 (348)
Q Consensus 280 ~l~~L~~l~l~~~~~~~lp--~~~~~l~~L~~L~l~~c~~l~~lp~----~i~~l~~L~~L~l 336 (348)
.+++|+.|.+++|+|.++- ..+..+++|+.|++.+ +++.+-+. -|..+++|+.||-
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~-NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG-NPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT--GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC-CcccchhhHHHHHHHHcChhheeCC
Confidence 4566666666666654331 2345566666666666 44444432 2445666666654
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.41 E-value=0.00019 Score=47.46 Aligned_cols=41 Identities=29% Similarity=0.477 Sum_probs=36.8
Q ss_pred CccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCC
Q 043181 275 PSEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNC 315 (348)
Q Consensus 275 p~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c 315 (348)
+..+..+++|++|++++|.++.+|+ .+..+++|+.|++++|
T Consensus 18 ~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 18 PDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3678899999999999999999875 6799999999999985
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.29 E-value=5.1e-05 Score=70.79 Aligned_cols=69 Identities=35% Similarity=0.553 Sum_probs=48.5
Q ss_pred eCCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLES 344 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~ 344 (348)
.+|..++.+..|+.|+++.|.+..+|+.++.|+ |..||++ |+++..||-.|.+|+-|++|-|.+| .+.+
T Consensus 180 slpsql~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfS-cNkis~iPv~fr~m~~Lq~l~LenN-PLqS 248 (722)
T KOG0532|consen 180 SLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFS-CNKISYLPVDFRKMRHLQVLQLENN-PLQS 248 (722)
T ss_pred hchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecc-cCceeecchhhhhhhhheeeeeccC-CCCC
Confidence 466667777777777777777777777777555 7777777 4777777777777777777777766 5554
No 32
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.23 E-value=7e-05 Score=73.64 Aligned_cols=71 Identities=38% Similarity=0.515 Sum_probs=36.3
Q ss_pred CCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.|..+..+.+|+.|+++.|.+.+.|.+++++.+|++|.|.+ +.+..+|.++..+.+|++|++++| ....+|
T Consensus 60 fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~-n~l~~lP~~~~~lknl~~LdlS~N-~f~~~P 130 (1081)
T KOG0618|consen 60 FPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKN-NRLQSLPASISELKNLQYLDLSFN-HFGPIP 130 (1081)
T ss_pred CCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheecc-chhhcCchhHHhhhcccccccchh-ccCCCc
Confidence 34444555555555555555555555555555555555553 455555555555555555555555 333343
No 33
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.19 E-value=0.00011 Score=56.16 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=34.2
Q ss_pred cCCCCccEEecCCCCCccCchhhh-ccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 279 GDLKILRYLNFSDAQVETSPESVC-KLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 279 ~~l~~L~~l~l~~~~~~~lp~~~~-~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
....+|...++++|.+..+|+.+. +.+-+++|++.+ +.+.++|.++..++.|+.|+++.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccC
Confidence 334455555666666666665553 233556666665 556666666666666666666655
No 34
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.12 E-value=0.00067 Score=67.74 Aligned_cols=58 Identities=21% Similarity=0.349 Sum_probs=25.5
Q ss_pred CccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 283 ILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 283 ~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
+|+.|++++|.+.++|..+. .+|+.|++++ +++..+|..+. .+|+.|++++| .+..+|
T Consensus 242 ~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP 299 (754)
T PRK15370 242 TIQEMELSINRITELPERLP--SALQSLDLFH-NKISCLPENLP--EELRYLSVYDN-SIRTLP 299 (754)
T ss_pred cccEEECcCCccCcCChhHh--CCCCEEECcC-CccCccccccC--CCCcEEECCCC-ccccCc
Confidence 34444555444444444332 2444444443 34444444332 24444444444 344333
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.95 E-value=0.00073 Score=61.97 Aligned_cols=60 Identities=23% Similarity=0.346 Sum_probs=27.3
Q ss_pred CCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 282 KILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 282 ~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.+++.|++++|.++++|. -..+|+.|.+++|..+..+|..+ ..+|++|++++|..+.++|
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 445555555555554441 11235555555555555554432 1244555555444444443
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=96.91 E-value=0.00049 Score=64.09 Aligned_cols=73 Identities=36% Similarity=0.496 Sum_probs=52.2
Q ss_pred eCCccccCCC-CccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLK-ILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~-~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+|+....+. +|+.|++++|.+..+|..++.+++|+.|++.+ +++.++|...+.+++|+.|++++| .+..+|.
T Consensus 130 ~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~ 203 (394)
T COG4886 130 DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF-NDLSDLPKLLSNLSNLNNLDLSGN-KISDLPP 203 (394)
T ss_pred cCccccccchhhcccccccccchhhhhhhhhccccccccccCC-chhhhhhhhhhhhhhhhheeccCC-ccccCch
Confidence 5666666664 77777777777777776677777777777777 577777776667777777777777 6666664
No 37
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.90 E-value=0.038 Score=51.46 Aligned_cols=134 Identities=10% Similarity=0.033 Sum_probs=67.8
Q ss_pred CCChHHHHHHHHHhhcC---CCCCCcChhHHHHHHHHHHHcCCCchhHHHHHhhh-----cCCC--CchhHHHHhcCcc-
Q 043181 65 KWSDDDCLCVFTQRSSR---RTDFNMHMHLKEIGEKIVKKCNGLPLASEILGGLL-----HGKV--DCIDWEDVLNSKA- 133 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~---~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L-----~~~~--~~~~w~~~l~~~~- 133 (348)
+++.++..+++..++.. .... .+.-+..+++.+....|..+.|+.++-... ++.. +.+....+.+...
T Consensus 206 py~~~e~~~il~~r~~~~~~~~~~-~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 206 PYTADEIFDILKDRVEEGFYPGVV-DDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred CCCHHHHHHHHHHHHHhhcccCCC-CHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHHH
Confidence 67778888888876522 1111 222233444444444566787777654321 1111 2444444444322
Q ss_pred ----cccccCchHHHHHHhHhccCCC--CCccchhHHHHH--HHHcCCCccCCCCchHHHHHHHHHHHHHhCCcccee
Q 043181 134 ----ISCHYLLPHLKRCFSYCSIFPE--DCKFEEEELILL--RMAQGFLRHENSEKPVEQLGHQYSGELQSRSHFRQS 203 (348)
Q Consensus 134 ----~s~~~L~~~~k~~fl~~~~fp~--~~~i~~~~li~~--w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 203 (348)
-.+..||.+.|..+..++..-+ ...+...++... .++..+-. . ........+++..|.+.++|...
T Consensus 285 ~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~--~--~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 285 VHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY--E--PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC--C--cCcHHHHHHHHHHHHhcCCeEEE
Confidence 4567888887776654442211 123344444321 22221100 0 11234456789999999999863
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=96.87 E-value=0.001 Score=66.55 Aligned_cols=58 Identities=24% Similarity=0.324 Sum_probs=26.3
Q ss_pred CccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 283 ILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 283 ~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
+|+.|++++|.++.+|..+. ++|+.|++++ +.+..+|+.+. .+|+.|++++| .+..+|
T Consensus 347 sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~-N~Lt~LP~~l~--~sL~~LdLs~N-~L~~LP 404 (754)
T PRK15370 347 ELQVLDVSKNQITVLPETLP--PTITTLDVSR-NALTNLPENLP--AALQIMQASRN-NLVRLP 404 (754)
T ss_pred cccEEECCCCCCCcCChhhc--CCcCEEECCC-CcCCCCCHhHH--HHHHHHhhccC-CcccCc
Confidence 44455555554444444332 3455555554 23444544432 23455555554 344443
No 39
>PRK08118 topology modulation protein; Reviewed
Probab=96.79 E-value=0.0005 Score=55.78 Aligned_cols=28 Identities=32% Similarity=0.618 Sum_probs=21.6
Q ss_pred CCCCcHHHHHHHHhcchhhh-cCCCeeEE
Q 043181 1 MGGVGKTTLAQLLCNNVKVK-NRFHLETW 28 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~-~~F~~~~w 28 (348)
.+|+||||||+.+++...+. -+||..+|
T Consensus 9 ~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 9 SGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred CCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 47999999999999965443 55777764
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.66 E-value=0.00063 Score=58.91 Aligned_cols=59 Identities=25% Similarity=0.258 Sum_probs=46.6
Q ss_pred cCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 279 GDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 279 ~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
..++.|..+||++|.|+.+-++..-++.++.|++++ +.+..+-. +..|++|++|++++|
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~n-La~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQN-LAELPQLQLLDLSGN 339 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccc-cceeeehh-hhhcccceEeecccc
Confidence 445668888888888888888888888888888887 67777765 778888888888877
No 41
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.62 E-value=0.00078 Score=34.38 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=11.3
Q ss_pred ccEEecCCCCCccCchhhhc
Q 043181 284 LRYLNFSDAQVETSPESVCK 303 (348)
Q Consensus 284 L~~l~l~~~~~~~lp~~~~~ 303 (348)
|++|++++|.++++|+++++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 55666666665555555443
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.61 E-value=0.0013 Score=55.15 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=27.0
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchh
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLA 108 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 108 (348)
..+.+|-.++..+.+..-+- +--.+.+.+|+++|.|-|--
T Consensus 178 ~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRi 217 (233)
T PF05496_consen 178 FYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRI 217 (233)
T ss_dssp --THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHH
Confidence 57788888888877633321 11257899999999999953
No 43
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.58 E-value=0.0027 Score=58.11 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=36.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCC--CCHHHHHHHHHHh
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFED--FDVFRITKTMLQS 47 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~--~~~~~l~~~il~~ 47 (348)
+|.|||||++.+++..... +|+..+|+.+.+. .++.++++.++..
T Consensus 177 ~g~GKTtL~~~i~~~I~~n-hfdv~v~VlLIgER~~EVtDLqrsIlg~ 223 (415)
T TIGR00767 177 PKAGKTVLLQKIAQAITRN-HPEVELIVLLIDERPEEVTDMQRSVKGE 223 (415)
T ss_pred CCCChhHHHHHHHHhhccc-CCceEEEEEEcCCCCccHHHHHHHhhce
Confidence 5999999999999954333 6999999998866 6889999988643
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.57 E-value=0.0014 Score=64.89 Aligned_cols=79 Identities=20% Similarity=0.278 Sum_probs=52.4
Q ss_pred HHHhhhhccccee--------eCCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhH--HHhcccc
Q 043181 260 LFDLSLKLQCFRY--------ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLF--ADIGNLN 329 (348)
Q Consensus 260 ~~~~~~~~~~l~~--------~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp--~~i~~l~ 329 (348)
....+|++++|.+ ++-.-..++++|..||+|++.++.+ ..++.|+||++|.+++- .+..-+ ..+-+|+
T Consensus 143 ig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnL-e~e~~~~l~~LF~L~ 220 (699)
T KOG3665|consen 143 IGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNL-EFESYQDLIDLFNLK 220 (699)
T ss_pred HhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCC-CCCchhhHHHHhccc
Confidence 4445667776666 1222345788899999999988887 66888888888877762 222222 1355777
Q ss_pred cCcEeeccCCC
Q 043181 330 NLHHLDNFVTF 340 (348)
Q Consensus 330 ~L~~L~l~~~~ 340 (348)
+|+.||++..+
T Consensus 221 ~L~vLDIS~~~ 231 (699)
T KOG3665|consen 221 KLRVLDISRDK 231 (699)
T ss_pred CCCeeeccccc
Confidence 88888877653
No 45
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.51 E-value=0.00051 Score=59.46 Aligned_cols=63 Identities=29% Similarity=0.352 Sum_probs=43.2
Q ss_pred CCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHH--HhcccccCcEeeccCCCCCCCCC
Q 043181 281 LKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFA--DIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 281 l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
+.+.+.|.|++|.++++ ..+++|..|..||+++ +++.++.. +||+|+.|+++.+.+| .+..+|
T Consensus 351 LGNIKtL~La~N~iE~L-SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~N-Pl~~~v 415 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETL-SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGN-PLAGSV 415 (490)
T ss_pred hcCEeeeehhhhhHhhh-hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCC-Cccccc
Confidence 33344444444444433 3367788888999988 77777764 6899999999999988 666555
No 46
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.20 E-value=0.028 Score=51.16 Aligned_cols=144 Identities=15% Similarity=0.113 Sum_probs=88.4
Q ss_pred HHHHHHHHHhhcCCC-CCCcChhHHHHHHHHHHHcCCCchhHHHHHhhhcCCCCc-------hhHHHHhcC---------
Q 043181 69 DDCLCVFTQRSSRRT-DFNMHMHLKEIGEKIVKKCNGLPLASEILGGLLHGKVDC-------IDWEDVLNS--------- 131 (348)
Q Consensus 69 ~~a~~Lf~~~a~~~~-~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~~~-------~~w~~~l~~--------- 131 (348)
+++.++|...+.... ++.....-.....+|.+...|.|++|...++..+.-... +.|.....-
T Consensus 145 d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~q 224 (414)
T COG3903 145 DEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQ 224 (414)
T ss_pred CchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHH
Confidence 368888887653222 111222234678899999999999998888776665221 223322221
Q ss_pred -----cccccccCchHHHHHHhHhccCCCCCccchhHHHHHHHHcCCCccCCCCchHHHHHHHHHHHHHhCCccceeC-C
Q 043181 132 -----KAISCHYLLPHLKRCFSYCSIFPEDCKFEEEELILLRMAQGFLRHENSEKPVEQLGHQYSGELQSRSHFRQSS-S 205 (348)
Q Consensus 132 -----~~~s~~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~-~ 205 (348)
+..||.-|..-.+-.|-.++.|...+... ...|.+.|-.. .........-+..+++++++...+ .
T Consensus 225 tl~asl~ws~~lLtgwe~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~ 295 (414)
T COG3903 225 TLRASLDWSYALLTGWERALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLL 295 (414)
T ss_pred hccchhhhhhHhhhhHHHHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhh
Confidence 11888888888888888888888766433 23344444221 123355566677899999988643 2
Q ss_pred CcceEeechHHHHHHH
Q 043181 206 NVSRFAMHDFINDLAH 221 (348)
Q Consensus 206 ~~~~~~mh~li~~~~~ 221 (348)
....++.-+..+.|+.
T Consensus 296 ~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 296 GRARYRLLETGRRYAL 311 (414)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 2335666666666665
No 47
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.13 E-value=0.0019 Score=32.90 Aligned_cols=22 Identities=36% Similarity=0.471 Sum_probs=17.1
Q ss_pred CCCEeeccCCCccchhHHHhccc
Q 043181 306 NLETLKLQNCNRLQKLFADIGNL 328 (348)
Q Consensus 306 ~L~~L~l~~c~~l~~lp~~i~~l 328 (348)
+|++|++++| .++.+|+++++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5889999996 788999876654
No 48
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.12 E-value=0.0079 Score=60.20 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=12.9
Q ss_pred CCccEEecCCCCCccCch
Q 043181 282 KILRYLNFSDAQVETSPE 299 (348)
Q Consensus 282 ~~L~~l~l~~~~~~~lp~ 299 (348)
++|++|++++|.++.+|.
T Consensus 302 ~~L~~LdLS~N~L~~Lp~ 319 (788)
T PRK15387 302 PGLQELSVSDNQLASLPA 319 (788)
T ss_pred cccceeECCCCccccCCC
Confidence 567777777777776654
No 49
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=96.11 E-value=0.0055 Score=55.07 Aligned_cols=62 Identities=21% Similarity=0.203 Sum_probs=37.4
Q ss_pred cccCCCCccEEecCCCCCc-----cCchhhhccCCCCEeeccCCCccch-hHHHhc-c----cccCcEeeccCC
Q 043181 277 EIGDLKILRYLNFSDAQVE-----TSPESVCKLHNLETLKLQNCNRLQK-LFADIG-N----LNNLHHLDNFVT 339 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~~-----~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~i~-~----l~~L~~L~l~~~ 339 (348)
.+..+++|++|++++|.+. .++..+..+++|++|++++|. +.. -+..+. . .++|++|++++|
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCC
Confidence 3445567888888877764 234455667778888887753 332 111121 1 257888888777
No 50
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=96.09 E-value=0.0019 Score=60.97 Aligned_cols=50 Identities=24% Similarity=0.239 Sum_probs=37.8
Q ss_pred eCCccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhHH
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLFA 323 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~ 323 (348)
..+++++..++|+.|+|++|.++++|+ ++..|..|+.|+|++ +.+..+..
T Consensus 308 ih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e 358 (873)
T KOG4194|consen 308 IHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH-NSIDHLAE 358 (873)
T ss_pred eecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc-cchHHHHh
Confidence 456778888899999999999988864 566677777777777 56666654
No 51
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.06 E-value=0.0033 Score=62.83 Aligned_cols=58 Identities=19% Similarity=0.123 Sum_probs=46.7
Q ss_pred CCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCC
Q 043181 282 KILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLE 343 (348)
Q Consensus 282 ~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~ 343 (348)
.+|+.|++++|.++.+|.. +.+|+.|++++ +++..||.+++++++|+.|++++|+..+
T Consensus 402 s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 402 SELKELMVSGNRLTSLPML---PSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred cCCCEEEccCCcCCCCCcc---hhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCc
Confidence 4677888888888877753 34677888988 6889999999999999999999995443
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.99 E-value=0.0038 Score=58.10 Aligned_cols=69 Identities=29% Similarity=0.441 Sum_probs=61.5
Q ss_pred cccCCCCccEEecCCCCCccCchhhhccC-CCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 277 EIGDLKILRYLNFSDAQVETSPESVCKLH-NLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~~~lp~~~~~l~-~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+..+..+..|++.++.++++|+....+. +|+.|++++ +.+..+|..++.+++|+.|++.+| .+..+|.
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~ 180 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFN-DLSDLPK 180 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccc-cchhhhhhhhhccccccccccCCc-hhhhhhh
Confidence 34555789999999999999999999985 999999998 899999988999999999999999 7777764
No 53
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.92 E-value=0.0093 Score=45.91 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=39.6
Q ss_pred CCCcHHHHHHHHhcchhhhc---CCCeeEEEEcCCCCCHHHHHHHHHHhccccccC
Q 043181 2 GGVGKTTLAQLLCNNVKVKN---RFHLETWVYLFEDFDVFRITKTMLQSISTEAVR 54 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~---~F~~~~wv~~~~~~~~~~l~~~il~~l~~~~~~ 54 (348)
+|+||||+++++.+...... .-...+|+......+...+...++..++.....
T Consensus 13 ~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 68 (131)
T PF13401_consen 13 PGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS 68 (131)
T ss_dssp TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS
T ss_pred CCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc
Confidence 69999999999998432110 024567998877778999999999999876555
No 54
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=95.84 E-value=0.0066 Score=54.53 Aligned_cols=66 Identities=21% Similarity=0.198 Sum_probs=49.4
Q ss_pred CccccCCCCccEEecCCCCCc-----cCchhhhccCCCCEeeccCCCc----cchhHHHhcccccCcEeeccCCC
Q 043181 275 PSEIGDLKILRYLNFSDAQVE-----TSPESVCKLHNLETLKLQNCNR----LQKLFADIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 275 p~~~~~l~~L~~l~l~~~~~~-----~lp~~~~~l~~L~~L~l~~c~~----l~~lp~~i~~l~~L~~L~l~~~~ 340 (348)
+..+..+.+|+.|++++|.++ .++..+..+++|+.|++++|.- ...++..+.++++|++|++++|.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 344566778999999999876 3455666778999999998642 23455667788899999999983
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.84 E-value=0.0015 Score=50.06 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=25.6
Q ss_pred ccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 284 LRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 284 L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
+..|++++|.++.+|+.+..++.|+.|+++. +++...|.-|..|.+|..|+..++
T Consensus 79 ~t~lNl~~neisdvPeE~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 79 ATTLNLANNEISDVPEELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hhhhhcchhhhhhchHHHhhhHHhhhccccc-CccccchHHHHHHHhHHHhcCCCC
Confidence 3444444444444444444444444444444 344444444444444444444444
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.76 E-value=0.0063 Score=55.98 Aligned_cols=11 Identities=45% Similarity=0.893 Sum_probs=4.9
Q ss_pred CCCEeeccCCC
Q 043181 306 NLETLKLQNCN 316 (348)
Q Consensus 306 ~L~~L~l~~c~ 316 (348)
+|++|++.+|.
T Consensus 157 SLk~L~Is~c~ 167 (426)
T PRK15386 157 SLKTLSLTGCS 167 (426)
T ss_pred cccEEEecCCC
Confidence 34444444443
No 57
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.70 E-value=0.0014 Score=58.92 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=51.0
Q ss_pred CCccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFV 338 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~ 338 (348)
.|..|+.+++|+.|||++|.|+.| |..+.-|.+|..|-+-+.++++++|.+ ++.|.+|+.|.++-
T Consensus 83 P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 83 PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 456789999999999999999975 778888999988888777889999964 55555555554443
No 58
>PRK06893 DNA replication initiation factor; Validated
Probab=95.54 E-value=0.069 Score=45.71 Aligned_cols=41 Identities=12% Similarity=0.208 Sum_probs=26.3
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhH
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLAS 109 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal 109 (348)
++++++.++++.+.+....- ..+ .+...-+++++.|-.-++
T Consensus 160 ~pd~e~~~~iL~~~a~~~~l-~l~---~~v~~~L~~~~~~d~r~l 200 (229)
T PRK06893 160 DLTDEQKIIVLQRNAYQRGI-ELS---DEVANFLLKRLDRDMHTL 200 (229)
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhccCCHHHH
Confidence 78888888888888764432 122 355666777776655443
No 59
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=95.38 E-value=0.021 Score=54.17 Aligned_cols=61 Identities=26% Similarity=0.272 Sum_probs=34.3
Q ss_pred ccCCCCccEEecCCCCCccCc-hhhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCC
Q 043181 278 IGDLKILRYLNFSDAQVETSP-ESVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVT 339 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~ 339 (348)
++.=.++++|+|++|+|+.+- ..+..+.+|.+|.|+. +.+..||.- +.+|++|+.|+|..|
T Consensus 169 fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 169 FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred CCCCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhhcchhhhhhcccc
Confidence 444455666666666665542 3445555666666665 556666553 334666666666555
No 60
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.33 E-value=0.0084 Score=56.25 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=47.1
Q ss_pred ccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCC
Q 043181 278 IGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESL 345 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~l 345 (348)
+..+.+|++|++++|.|+.+.. +..++.|+.|++.+ +.+..++. +..+.+|+.+++++| .+..+
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~~-~~~l~~L~~l~l~~n-~i~~i 177 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSG-NLISDISG-LESLKSLKLLDLSYN-RIVDI 177 (414)
T ss_pred hhhhhcchheeccccccccccc-hhhccchhhheecc-CcchhccC-CccchhhhcccCCcc-hhhhh
Confidence 6678888888888888887744 77777788888887 67777764 666778888888777 44433
No 61
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.32 E-value=0.017 Score=53.78 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=32.2
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHH
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRIT 41 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~ 41 (348)
++|+||||+|+++++.......|+.+.||.++...+....+
T Consensus 202 ppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 202 PPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred CCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHh
Confidence 58999999999999854444567788899998887755554
No 62
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.93 E-value=0.012 Score=53.15 Aligned_cols=65 Identities=22% Similarity=0.276 Sum_probs=48.6
Q ss_pred cccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCC
Q 043181 277 EIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLE 343 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~ 343 (348)
.|..|++|+.++|++|.++.+ +.++..+.+++.|.|.. +++..+... +..+..|+.|+|++| .+.
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N-~it 335 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDN-QIT 335 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCC-eeE
Confidence 367889999999999998876 45667777778777777 677777664 456777788888777 443
No 63
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.85 E-value=0.069 Score=48.53 Aligned_cols=20 Identities=45% Similarity=0.707 Sum_probs=16.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF 23 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F 23 (348)
+|+||||||+.+.. .....|
T Consensus 57 PG~GKTTlA~liA~--~~~~~f 76 (436)
T COG2256 57 PGTGKTTLARLIAG--TTNAAF 76 (436)
T ss_pred CCCCHHHHHHHHHH--hhCCce
Confidence 69999999999998 555544
No 64
>PRK07261 topology modulation protein; Provisional
Probab=94.79 E-value=0.047 Score=44.42 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=19.0
Q ss_pred CCCCcHHHHHHHHhcchhh-hcCCCeeEEE
Q 043181 1 MGGVGKTTLAQLLCNNVKV-KNRFHLETWV 29 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~-~~~F~~~~wv 29 (348)
++|+||||||+++.....+ .-+.|...|-
T Consensus 8 ~~GsGKSTla~~l~~~~~~~~i~~D~~~~~ 37 (171)
T PRK07261 8 YSGSGKSTLARKLSQHYNCPVLHLDTLHFQ 37 (171)
T ss_pred CCCCCHHHHHHHHHHHhCCCeEecCCEEec
Confidence 4799999999999863222 1234555554
No 65
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.65 E-value=0.02 Score=27.03 Aligned_cols=16 Identities=31% Similarity=0.553 Sum_probs=5.9
Q ss_pred CccEEecCCCCCccCc
Q 043181 283 ILRYLNFSDAQVETSP 298 (348)
Q Consensus 283 ~L~~l~l~~~~~~~lp 298 (348)
+|+.|++++|+++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3455555555544443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.52 E-value=0.026 Score=48.12 Aligned_cols=38 Identities=32% Similarity=0.472 Sum_probs=18.9
Q ss_pred ccCCCCccEEecCCCCCc---cCchhhhccCCCCEeeccCCC
Q 043181 278 IGDLKILRYLNFSDAQVE---TSPESVCKLHNLETLKLQNCN 316 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~---~lp~~~~~l~~L~~L~l~~c~ 316 (348)
...+++|+++++++|++. ++++ +.++.+|..|++.+|.
T Consensus 87 ~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 87 AEKAPNLKVLNLSGNKIKDLSTLRP-LKELENLKSLDLFNCS 127 (260)
T ss_pred hhhCCceeEEeecCCccccccccch-hhhhcchhhhhcccCC
Confidence 334455555555555543 2222 4445555555555543
No 67
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.51 E-value=0.31 Score=42.44 Aligned_cols=28 Identities=11% Similarity=0.287 Sum_probs=23.9
Q ss_pred HHHHHHHHHHcCCCchhHHHHHhhhcCC
Q 043181 92 KEIGEKIVKKCNGLPLASEILGGLLHGK 119 (348)
Q Consensus 92 ~~~~~~i~~~c~GlPLal~~ig~~L~~~ 119 (348)
..+.+-+++..+|=|.++..++..+...
T Consensus 263 ~k~L~~li~~f~GgPVGl~tia~~lge~ 290 (332)
T COG2255 263 RKYLRALIEQFGGGPVGLDTIAAALGED 290 (332)
T ss_pred HHHHHHHHHHhCCCCccHHHHHHHhcCc
Confidence 4677778888899999999999998876
No 68
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.48 E-value=0.16 Score=47.68 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=29.3
Q ss_pred CCChHHHHHHHHHhhcCCC-CC-CcChhHHHHHHHHHHHcCCCchhHHH
Q 043181 65 KWSDDDCLCVFTQRSSRRT-DF-NMHMHLKEIGEKIVKKCNGLPLASEI 111 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~-~~-~~~~~~~~~~~~i~~~c~GlPLal~~ 111 (348)
+++.++.+.++.+...... .. ... .+..+.+++.|+|-+..+..
T Consensus 150 ~ls~e~i~~lL~~~l~~~~~~~i~i~---~~al~~l~~~s~Gd~R~aln 195 (413)
T PRK13342 150 PLSEEDIEQLLKRALEDKERGLVELD---DEALDALARLANGDARRALN 195 (413)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHhCCCCHHHHHH
Confidence 8899999999988653211 11 111 35677889999998866543
No 69
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=94.40 E-value=0.035 Score=43.87 Aligned_cols=28 Identities=29% Similarity=0.570 Sum_probs=20.2
Q ss_pred CCCCcHHHHHHHHhcchhhhcC-CCeeEEEE
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNR-FHLETWVY 30 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~-F~~~~wv~ 30 (348)
|.|+||||+++.+.+ .++.. |...-+++
T Consensus 13 ~PGvGKtTl~~ki~e--~L~~~g~kvgGf~t 41 (179)
T COG1618 13 RPGVGKTTLVLKIAE--KLREKGYKVGGFIT 41 (179)
T ss_pred CCCccHHHHHHHHHH--HHHhcCceeeeEEe
Confidence 689999999999999 44443 65444443
No 70
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.39 E-value=0.023 Score=43.13 Aligned_cols=16 Identities=44% Similarity=0.546 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
.+|+||||+|+.+.+.
T Consensus 7 ~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 7 PPGSGKSTLAKELAER 22 (121)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999999883
No 71
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.24 E-value=0.34 Score=42.76 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=39.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCC------eeEEEEcCCCCCHHHHHHHHHHhccccccCCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFH------LETWVYLFEDFDVFRITKTMLQSISTEAVRDND 57 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~------~~~wv~~~~~~~~~~l~~~il~~l~~~~~~~~~ 57 (348)
+|+|||+++++..+. .-..++ .++.|......+...+...|+..++.+....+.
T Consensus 70 snnGKT~Ii~rF~~~--hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~ 129 (302)
T PF05621_consen 70 SNNGKTMIIERFRRL--HPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDR 129 (302)
T ss_pred CCCcHHHHHHHHHHH--CCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCC
Confidence 589999999998863 111221 366677788889999999999999877544433
No 72
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.19 E-value=0.013 Score=56.98 Aligned_cols=61 Identities=30% Similarity=0.301 Sum_probs=43.3
Q ss_pred cccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 277 EIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
.+..+++|++|||++|.+..+|.--..--+|+.|.+++ +-+++|- +|.+|.+|+.||++.|
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn-N~l~tL~-gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN-NALTTLR-GIENLKSLYGLDLSYN 264 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhhhheeeeecc-cHHHhhh-hHHhhhhhhccchhHh
Confidence 56677788888888888877765211122477788877 6677775 4888888888888776
No 73
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.11 E-value=0.018 Score=54.11 Aligned_cols=61 Identities=26% Similarity=0.343 Sum_probs=42.6
Q ss_pred cccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCC
Q 043181 277 EIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVT 339 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~ 339 (348)
.+..+..|+.|++++|.+..++. +..+.+|+.+++++ +.+..++.. ..++.+|+.+.+.+|
T Consensus 135 ~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~-n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 135 GLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSY-NRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred chhhccchhhheeccCcchhccC-CccchhhhcccCCc-chhhhhhhhhhhhccchHHHhccCC
Confidence 45566667788888887776644 55577788888877 566666653 466777777777777
No 74
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.02 E-value=0.0082 Score=58.29 Aligned_cols=62 Identities=21% Similarity=0.218 Sum_probs=37.9
Q ss_pred CccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCC
Q 043181 275 PSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVT 339 (348)
Q Consensus 275 p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~ 339 (348)
..++.-++.|+.|+|+.|++...- .+..+++|++|||+. +.+..+|. ++..+ .|+.|++++|
T Consensus 180 D~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lrnN 242 (1096)
T KOG1859|consen 180 DESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLRNN 242 (1096)
T ss_pred HHHHHHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeeccc
Confidence 344455566777777777766654 566667777777776 66666665 12222 3666766666
No 75
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.27 Score=44.19 Aligned_cols=15 Identities=47% Similarity=0.656 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|.|||-||++|+|.
T Consensus 194 PGTGKTLLAkAVA~~ 208 (406)
T COG1222 194 PGTGKTLLAKAVANQ 208 (406)
T ss_pred CCCcHHHHHHHHHhc
Confidence 699999999999994
No 76
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.78 E-value=0.058 Score=44.02 Aligned_cols=27 Identities=30% Similarity=0.572 Sum_probs=21.6
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
+.|.||||+|+.+++ +....+...+++
T Consensus 15 ~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 15 LAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 469999999999999 666666666666
No 77
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.60 E-value=0.11 Score=47.87 Aligned_cols=47 Identities=11% Similarity=0.221 Sum_probs=33.6
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCC------eeEEEEcCCCCCHHHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFH------LETWVYLFEDFDVFRITKTMLQSIS 49 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~------~~~wv~~~~~~~~~~l~~~il~~l~ 49 (348)
.+|+||||+++++++. +....+ ..+|++.....+...++..++.++.
T Consensus 48 ~~GtGKT~l~~~~~~~--l~~~~~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~ 100 (365)
T TIGR02928 48 KTGTGKTAVTKYVMKE--LEEAAEDRDVRVVTVYVNCQILDTLYQVLVELANQLR 100 (365)
T ss_pred CCCCCHHHHHHHHHHH--HHHHhhccCCceEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3699999999999984 322211 3556776666677788888888874
No 78
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.53 E-value=0.041 Score=42.01 Aligned_cols=16 Identities=44% Similarity=0.644 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
..|+||||+|+.+.+.
T Consensus 6 ~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 6 IPGSGKTTIAKELAER 21 (129)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4699999999999983
No 79
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.25 E-value=0.088 Score=41.89 Aligned_cols=27 Identities=33% Similarity=0.310 Sum_probs=19.1
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.+|.||||||+++.+ ++...-..+.++
T Consensus 10 lsGsGKtTlA~~L~~--~L~~~g~~~~~L 36 (156)
T PF01583_consen 10 LSGSGKTTLARALER--RLFARGIKVYLL 36 (156)
T ss_dssp STTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred CCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 479999999999999 554443344444
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.19 E-value=0.085 Score=27.84 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=14.2
Q ss_pred CCCccEEecCCCCCccCchhh
Q 043181 281 LKILRYLNFSDAQVETSPESV 301 (348)
Q Consensus 281 l~~L~~l~l~~~~~~~lp~~~ 301 (348)
|.+|++|++++|.++.+|+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777776653
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.19 E-value=0.085 Score=27.84 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=14.2
Q ss_pred CCCccEEecCCCCCccCchhh
Q 043181 281 LKILRYLNFSDAQVETSPESV 301 (348)
Q Consensus 281 l~~L~~l~l~~~~~~~lp~~~ 301 (348)
|.+|++|++++|.++.+|+..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777776653
No 82
>PF05729 NACHT: NACHT domain
Probab=93.17 E-value=0.1 Score=41.71 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=22.0
Q ss_pred CCCcHHHHHHHHhcchhhhcC----CCeeEEEEcCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNR----FHLETWVYLFED 34 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~ 34 (348)
+|+||||+++.++........ +...+|+.....
T Consensus 9 ~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (166)
T PF05729_consen 9 PGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDI 45 (166)
T ss_pred CCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhh
Confidence 799999999999985433333 334556655443
No 83
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.2 Score=48.43 Aligned_cols=15 Identities=53% Similarity=0.709 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|.||||+|+++.+.
T Consensus 477 PGC~KT~lAkalAne 491 (693)
T KOG0730|consen 477 PGCGKTLLAKALANE 491 (693)
T ss_pred CCcchHHHHHHHhhh
Confidence 799999999999993
No 84
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.83 E-value=0.14 Score=39.62 Aligned_cols=31 Identities=26% Similarity=0.196 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFED 34 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 34 (348)
+|+||||+|+++++. ....-...+++.....
T Consensus 28 ~G~GKT~l~~~i~~~--~~~~~~~v~~~~~~~~ 58 (151)
T cd00009 28 PGTGKTTLARAIANE--LFRPGAPFLYLNASDL 58 (151)
T ss_pred CCCCHHHHHHHHHHH--hhcCCCCeEEEehhhh
Confidence 699999999999994 3222234556655443
No 85
>PRK08727 hypothetical protein; Validated
Probab=92.81 E-value=0.38 Score=41.27 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=20.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
.|+|||.||+++++ ..........|+++.
T Consensus 50 ~G~GKThL~~a~~~--~~~~~~~~~~y~~~~ 78 (233)
T PRK08727 50 AGTGKTHLALALCA--AAEQAGRSSAYLPLQ 78 (233)
T ss_pred CCCCHHHHHHHHHH--HHHHcCCcEEEEeHH
Confidence 69999999999988 333333345566543
No 86
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=92.72 E-value=0.14 Score=44.71 Aligned_cols=43 Identities=23% Similarity=0.200 Sum_probs=29.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCe-eEEEEcCCCC-CHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHL-ETWVYLFEDF-DVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~-~~~~l~~~il~ 46 (348)
+|+||||||+++++ .++.+|+. ++++.+++.. ++.++.+++..
T Consensus 78 ~G~GKTtLa~~i~~--~i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~ 122 (274)
T cd01133 78 AGVGKTVLIMELIN--NIAKAHGGYSVFAGVGERTREGNDLYHEMKE 122 (274)
T ss_pred CCCChhHHHHHHHH--HHHhcCCCEEEEEEeccCcHHHHHHHHHHHh
Confidence 59999999999999 56555654 4556666654 45555555543
No 87
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.69 E-value=0.16 Score=41.47 Aligned_cols=19 Identities=32% Similarity=0.529 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHhcchhhh
Q 043181 2 GGVGKTTLAQLLCNNVKVK 20 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (348)
+|+|||||.++++......
T Consensus 33 ~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 33 SGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhc
Confidence 7999999999999944444
No 88
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=92.33 E-value=0.15 Score=40.63 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc-----CCCCCHHHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL-----FEDFDVFRITKTMLQSI 48 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~-----~~~~~~~~l~~~il~~l 48 (348)
-|.||||+|.++.+ .|.. |-.+ ..+ ....+.+.+++.+
T Consensus 8 iGCGKTTva~aL~~------LFg~--wgHvQnDnI~~k-~~~~f~~~~l~~L 50 (168)
T PF08303_consen 8 IGCGKTTVALALSN------LFGE--WGHVQNDNITGK-RKPKFIKAVLELL 50 (168)
T ss_pred CCcCHHHHHHHHHH------HcCC--CCccccCCCCCC-CHHHHHHHHHHHH
Confidence 39999999999987 4554 5543 333 5777888888888
No 89
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=92.25 E-value=0.043 Score=41.84 Aligned_cols=20 Identities=50% Similarity=0.655 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF 23 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F 23 (348)
.|+||||+|+++.. .+...|
T Consensus 8 PG~GKT~la~~lA~--~~~~~f 27 (131)
T PF07726_consen 8 PGVGKTTLAKALAR--SLGLSF 27 (131)
T ss_dssp --HHHHHHHHHHHH--HTT--E
T ss_pred CccHHHHHHHHHHH--HcCCce
Confidence 59999999999999 666666
No 90
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.02 E-value=0.19 Score=45.15 Aligned_cols=37 Identities=27% Similarity=0.156 Sum_probs=23.5
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHH
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFR 39 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 39 (348)
.|||||||+|.+..- ........++-|+...-.+...
T Consensus 10 KGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d 46 (322)
T COG0003 10 KGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGD 46 (322)
T ss_pred CCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHh
Confidence 489999999999666 4444444566665544444333
No 91
>PF13173 AAA_14: AAA domain
Probab=91.92 E-value=0.13 Score=39.43 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=21.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDF 35 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 35 (348)
.|+|||||+++++++.. .-...+++++.+..
T Consensus 11 R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 11 RGVGKTTLLKQLAKDLL---PPENILYINFDDPR 41 (128)
T ss_pred CCCCHHHHHHHHHHHhc---ccccceeeccCCHH
Confidence 59999999999998432 22456677665543
No 92
>PTZ00301 uridine kinase; Provisional
Probab=91.82 E-value=0.16 Score=42.83 Aligned_cols=20 Identities=20% Similarity=0.429 Sum_probs=15.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF 23 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F 23 (348)
+|.||||||+.+.+ ++...+
T Consensus 12 SgSGKTTla~~l~~--~l~~~~ 31 (210)
T PTZ00301 12 SGSGKSSLSTNIVS--ELMAHC 31 (210)
T ss_pred CcCCHHHHHHHHHH--HHHhhc
Confidence 69999999999987 554443
No 93
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=91.77 E-value=0.18 Score=43.89 Aligned_cols=30 Identities=37% Similarity=0.306 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCC-CeeEEEEcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF-HLETWVYLFE 33 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~ 33 (348)
||+||||+|-.+.. ..+.+- ..++.|+...
T Consensus 12 GGvGKTT~a~nLa~--~La~~~~~kVLliDlDp 42 (259)
T COG1192 12 GGVGKTTTAVNLAA--ALAKRGGKKVLLIDLDP 42 (259)
T ss_pred CCccHHHHHHHHHH--HHHHhcCCcEEEEeCCC
Confidence 89999999999998 444222 3466665543
No 94
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.73 E-value=0.29 Score=41.12 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=27.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITK 42 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~ 42 (348)
+|.|||++|.++.. .....-..++|++.-. ++..++.+
T Consensus 21 ~GsGKT~l~~~~~~--~~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 21 PGSGKTNICMILAV--NAARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCCHHHHHHHHHH--HHHhCCCeEEEEECCC-CCHHHHHH
Confidence 69999999999887 3434446788998865 56555444
No 95
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.64 E-value=1 Score=38.60 Aligned_cols=15 Identities=27% Similarity=0.669 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||+||+++++.
T Consensus 54 ~G~GKThLl~a~~~~ 68 (235)
T PRK08084 54 EGAGRSHLLHAACAE 68 (235)
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999983
No 96
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=91.57 E-value=0.031 Score=51.12 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=48.1
Q ss_pred cCCCCccEEecCCCCCccCc--hhhhccCCCCEeeccCCCccchh--HHH-----hcccccCcEeeccCCCCCCCCC
Q 043181 279 GDLKILRYLNFSDAQVETSP--ESVCKLHNLETLKLQNCNRLQKL--FAD-----IGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 279 ~~l~~L~~l~l~~~~~~~lp--~~~~~l~~L~~L~l~~c~~l~~l--p~~-----i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.-+..|+.|||++|.+...| ...+.++.|..|+++. +.+.++ |+. -..+++|++|++..| ++...|
T Consensus 243 ~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~ 317 (505)
T KOG3207|consen 243 KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWR 317 (505)
T ss_pred hhhhHHhhccccCCcccccccccccccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeecccC-cccccc
Confidence 45677899999999877666 6688899999999987 455444 321 246788999999988 554443
No 97
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=91.54 E-value=0.13 Score=47.15 Aligned_cols=63 Identities=25% Similarity=0.417 Sum_probs=47.1
Q ss_pred ccccCCCCccEEecCCCCCccC--chh-----hhccCCCCEeeccCCCccchhHH--HhcccccCcEeeccCC
Q 043181 276 SEIGDLKILRYLNFSDAQVETS--PES-----VCKLHNLETLKLQNCNRLQKLFA--DIGNLNNLHHLDNFVT 339 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~l--p~~-----~~~l~~L~~L~l~~c~~l~~lp~--~i~~l~~L~~L~l~~~ 339 (348)
...+.++.|..|+++.|++.++ |+. ...++.|++|++.. +++.+.+. .+..+.+|++|....+
T Consensus 265 ~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 265 YKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred cccccccchhhhhccccCcchhcCCCccchhhhcccccceeeeccc-Cccccccccchhhccchhhhhhcccc
Confidence 4578899999999999998864 554 35689999999998 67766664 3455667777776555
No 98
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=91.49 E-value=0.23 Score=40.96 Aligned_cols=31 Identities=35% Similarity=0.365 Sum_probs=20.1
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCeeEEEEcCC
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHLETWVYLFE 33 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 33 (348)
-||+||||+|..+......++ ..++.++...
T Consensus 7 kGG~GKTt~a~~la~~la~~g--~~VlliD~D~ 37 (195)
T PF01656_consen 7 KGGVGKTTIAANLAQALARKG--KKVLLIDLDP 37 (195)
T ss_dssp STTSSHHHHHHHHHHHHHHTT--S-EEEEEEST
T ss_pred CCCccHHHHHHHHHhcccccc--ccccccccCc
Confidence 389999999999998433322 2455555533
No 99
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.37 E-value=0.16 Score=38.81 Aligned_cols=30 Identities=27% Similarity=0.176 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFE 33 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 33 (348)
+|+||||+|+.+.. .........++++...
T Consensus 11 ~G~GKTtl~~~l~~--~~~~~~~~~~~~~~~~ 40 (148)
T smart00382 11 PGSGKTTLARALAR--ELGPPGGGVIYIDGED 40 (148)
T ss_pred CCCcHHHHHHHHHh--ccCCCCCCEEEECCEE
Confidence 69999999999998 4433322345554433
No 100
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=91.36 E-value=0.22 Score=44.59 Aligned_cols=29 Identities=34% Similarity=0.369 Sum_probs=18.1
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
|||||||+|.+..-...-+++ .++-++..
T Consensus 10 GGVGKTT~aaA~A~~~A~~G~--rtLlvS~D 38 (305)
T PF02374_consen 10 GGVGKTTVAAALALALARRGK--RTLLVSTD 38 (305)
T ss_dssp TTSSHHHHHHHHHHHHHHTTS---EEEEESS
T ss_pred CCCCcHHHHHHHHHHHhhCCC--CeeEeecC
Confidence 899999999887764333332 34444443
No 101
>PRK03839 putative kinase; Provisional
Probab=91.26 E-value=0.11 Score=42.51 Aligned_cols=16 Identities=50% Similarity=0.775 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
|.|.||||+|+++++.
T Consensus 8 ~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 8 TPGVGKTTVSKLLAEK 23 (180)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 5799999999999983
No 102
>PHA02518 ParA-like protein; Provisional
Probab=91.20 E-value=0.33 Score=40.63 Aligned_cols=33 Identities=33% Similarity=0.240 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFD 36 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 36 (348)
||+||||+|..+.. ..+..=..++-++.....+
T Consensus 10 GGvGKTT~a~~la~--~la~~g~~vlliD~D~q~~ 42 (211)
T PHA02518 10 GGAGKTTVATNLAS--WLHADGHKVLLVDLDPQGS 42 (211)
T ss_pred CCCCHHHHHHHHHH--HHHhCCCeEEEEeCCCCCC
Confidence 89999999999877 3332212345555544333
No 103
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.10 E-value=0.11 Score=39.83 Aligned_cols=15 Identities=53% Similarity=0.674 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+||||+|+.+++.
T Consensus 7 ~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 7 PGTGKTTLARALAQY 21 (132)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCeeHHHHHHHhh
Confidence 699999999999994
No 104
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.10 E-value=0.13 Score=43.96 Aligned_cols=65 Identities=29% Similarity=0.345 Sum_probs=50.1
Q ss_pred CccccCCCCccEEecCCC--CCc-cCchhhhccCCCCEeeccCCCccc---hhHHHhcccccCcEeeccCCCC
Q 043181 275 PSEIGDLKILRYLNFSDA--QVE-TSPESVCKLHNLETLKLQNCNRLQ---KLFADIGNLNNLHHLDNFVTFS 341 (348)
Q Consensus 275 p~~~~~l~~L~~l~l~~~--~~~-~lp~~~~~l~~L~~L~l~~c~~l~---~lp~~i~~l~~L~~L~l~~~~~ 341 (348)
-..+..|++|++|.++.| ++. .++...-++++|+++++++ +.+. .+++ ...+.+|..|++.+|+.
T Consensus 58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~p-l~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 58 LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRP-LKELENLKSLDLFNCSV 128 (260)
T ss_pred cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccch-hhhhcchhhhhcccCCc
Confidence 345678899999999999 544 5777677789999999998 5544 3433 56777889999999954
No 105
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=90.98 E-value=0.13 Score=37.67 Aligned_cols=15 Identities=60% Similarity=0.709 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
||+||||+|..+...
T Consensus 9 gG~Gkst~~~~la~~ 23 (104)
T cd02042 9 GGVGKTTTAVNLAAA 23 (104)
T ss_pred CCcCHHHHHHHHHHH
Confidence 899999999998873
No 106
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=90.96 E-value=0.19 Score=42.67 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
.|+||||||+++++. ........++++.
T Consensus 47 ~G~GKT~la~~~~~~--~~~~~~~~~~i~~ 74 (226)
T TIGR03420 47 SGSGKSHLLQAACAA--AEERGKSAIYLPL 74 (226)
T ss_pred CCCCHHHHHHHHHHH--HHhcCCcEEEEeH
Confidence 699999999999983 3333334455554
No 107
>PRK09087 hypothetical protein; Validated
Probab=90.96 E-value=0.71 Score=39.39 Aligned_cols=42 Identities=12% Similarity=0.030 Sum_probs=27.5
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHH
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASE 110 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 110 (348)
++++++-.+++.+.+-... ...+ +++..-|++++.|..-++.
T Consensus 152 ~pd~e~~~~iL~~~~~~~~-~~l~---~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 152 EPDDALLSQVIFKLFADRQ-LYVD---PHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred CCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHhhhhHHHHH
Confidence 8888888888888774332 2222 3566667777777665554
No 108
>PRK08233 hypothetical protein; Provisional
Probab=90.82 E-value=0.14 Score=41.79 Aligned_cols=15 Identities=47% Similarity=0.643 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
.+|.||||+|+.+..
T Consensus 11 ~~GsGKtTla~~L~~ 25 (182)
T PRK08233 11 VSGGGKTTLTERLTH 25 (182)
T ss_pred CCCCCHHHHHHHHHh
Confidence 369999999999987
No 109
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=90.81 E-value=0.43 Score=40.43 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFR 39 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~ 39 (348)
||.||||++..++. ....+=..+.-++...+..+.+
T Consensus 11 GGaGKTT~~~~LAs--~la~~G~~V~lIDaDpn~pl~~ 46 (231)
T PF07015_consen 11 GGAGKTTAAMALAS--ELAARGARVALIDADPNQPLAK 46 (231)
T ss_pred CCCcHHHHHHHHHH--HHHHCCCeEEEEeCCCCCcHHH
Confidence 89999999999998 4433222444454444434333
No 110
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.76 E-value=0.37 Score=39.81 Aligned_cols=63 Identities=24% Similarity=0.267 Sum_probs=47.8
Q ss_pred ccccCCCCccEEecCCCCCccCchhhhc-cCCCCEeeccCCCccchhHH--HhcccccCcEeeccCC
Q 043181 276 SEIGDLKILRYLNFSDAQVETSPESVCK-LHNLETLKLQNCNRLQKLFA--DIGNLNNLHHLDNFVT 339 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~lp~~~~~-l~~L~~L~l~~c~~l~~lp~--~i~~l~~L~~L~l~~~ 339 (348)
..+..+..|.+|.+.+|.|+.+-+.+.. +++|..|.|.+ +.+++|-+ .+..+++|++|.+=+|
T Consensus 58 ~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred ccCCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCccceeeecCC
Confidence 3567888999999999999988776754 56799999988 67776643 2556777888877666
No 111
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=90.69 E-value=0.13 Score=42.74 Aligned_cols=17 Identities=53% Similarity=0.718 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHhcch
Q 043181 1 MGGVGKTTLAQLLCNNV 17 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (348)
|=|+||||||+.+.++.
T Consensus 12 ~IG~GKSTLa~~La~~l 28 (216)
T COG1428 12 MIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccccCHHHHHHHHHHHh
Confidence 45999999999999943
No 112
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=90.56 E-value=0.16 Score=39.54 Aligned_cols=15 Identities=47% Similarity=0.587 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|.||||+|+.+..
T Consensus 7 ~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 7 PPGSGKSTLAKRLAK 21 (143)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999986
No 113
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=90.54 E-value=0.46 Score=39.83 Aligned_cols=43 Identities=23% Similarity=0.163 Sum_probs=28.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~ 46 (348)
=|.||||.++.++. ..+...-.++|..-.....+.+..++++.
T Consensus 12 DGaGKTT~~~~L~~--~l~~~g~~v~~trEP~~~~ige~iR~~ll 54 (208)
T COG0125 12 DGAGKTTQAELLKE--RLEERGIKVVLTREPGGTPIGEKIRELLL 54 (208)
T ss_pred CCCCHHHHHHHHHH--HHHHcCCeEEEEeCCCCChHHHHHHHHHc
Confidence 39999999999999 55555445666655555455555555443
No 114
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=90.53 E-value=0.13 Score=38.10 Aligned_cols=14 Identities=50% Similarity=0.769 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||++|+.+..
T Consensus 7 ~G~GKS~l~~~l~~ 20 (107)
T PF00910_consen 7 PGIGKSTLAKELAK 20 (107)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999887
No 115
>PRK00625 shikimate kinase; Provisional
Probab=90.49 E-value=0.16 Score=41.41 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
|.|+||||+|+.+.+
T Consensus 8 ~pGsGKTT~~k~La~ 22 (173)
T PRK00625 8 LPTVGKTSFGKALAK 22 (173)
T ss_pred CCCCCHHHHHHHHHH
Confidence 689999999999988
No 116
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=90.28 E-value=0.18 Score=34.00 Aligned_cols=15 Identities=40% Similarity=0.656 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|.||||+|+++.+.
T Consensus 8 ~gsGKst~~~~l~~~ 22 (69)
T cd02019 8 SGSGKSTVAKKLAEQ 22 (69)
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999884
No 117
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.27 E-value=0.64 Score=42.34 Aligned_cols=20 Identities=35% Similarity=0.549 Sum_probs=16.1
Q ss_pred CCCcHHHHHHHHhcchhhhcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF 23 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F 23 (348)
.|.|||-||++||. +....|
T Consensus 254 PGTGKTlLAKAvAT--Ec~tTF 273 (491)
T KOG0738|consen 254 PGTGKTLLAKAVAT--ECGTTF 273 (491)
T ss_pred CCCcHHHHHHHHHH--hhcCeE
Confidence 69999999999998 554444
No 118
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=90.26 E-value=0.16 Score=38.71 Aligned_cols=14 Identities=43% Similarity=0.601 Sum_probs=12.8
Q ss_pred CCcHHHHHHHHhcc
Q 043181 3 GVGKTTLAQLLCNN 16 (348)
Q Consensus 3 GiGKTtLa~~v~~~ 16 (348)
|.||||++|.+...
T Consensus 25 GaGKTtf~r~l~~~ 38 (123)
T PF02367_consen 25 GAGKTTFVRGLARA 38 (123)
T ss_dssp TSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999883
No 119
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.25 E-value=0.14 Score=51.15 Aligned_cols=64 Identities=28% Similarity=0.378 Sum_probs=50.0
Q ss_pred CCcccc-CCCCccEEecCCCCCc--cCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 274 LPSEIG-DLKILRYLNFSDAQVE--TSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 274 ~p~~~~-~l~~L~~l~l~~~~~~--~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
+|..++ .+|.|+.|.+++-.+. ++-.-..+++||..||+++ +++..+ .+|++|++|+.|.+.+=
T Consensus 139 W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl-~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 139 WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL-SGISRLKNLQVLSMRNL 205 (699)
T ss_pred HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc-HHHhccccHHHHhccCC
Confidence 344444 4689999999986653 3334456789999999999 789999 68999999999988754
No 120
>COG3899 Predicted ATPase [General function prediction only]
Probab=90.25 E-value=3.4 Score=42.58 Aligned_cols=139 Identities=18% Similarity=0.089 Sum_probs=83.6
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHHHhhhcCC------CCchhHHHHhcC-------
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEILGGLLHGK------VDCIDWEDVLNS------- 131 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~------~~~~~w~~~l~~------- 131 (348)
||+..|.-.+.......... ...+..+.|+++..|.|+-+.-+-..+... .+...|+.-...
T Consensus 218 PL~~~d~~~lV~~~l~~~~~-----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~ 292 (849)
T COG3899 218 PLSRADTNQLVAATLGCTKL-----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATT 292 (849)
T ss_pred cCchhhHHHHHHHHhCCccc-----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhh
Confidence 66666666666665422111 135789999999999999988777777664 223334322111
Q ss_pred ------cccccccCchHHHHHHhHhccCCCCCccchhHHHHHHHHcCCCccCCCCchHHHHHHHHHHHHHhCCccceeC-
Q 043181 132 ------KAISCHYLLPHLKRCFSYCSIFPEDCKFEEEELILLRMAQGFLRHENSEKPVEQLGHQYSGELQSRSHFRQSS- 204 (348)
Q Consensus 132 ------~~~s~~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~- 204 (348)
+..-.+.||...|......||+...+ +...|...+-. .....+...++.|.+..++..++
T Consensus 293 ~~vv~~l~~rl~kL~~~t~~Vl~~AA~iG~~F--~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~ 359 (849)
T COG3899 293 DAVVEFLAARLQKLPGTTREVLKAAACIGNRF--DLDTLAALAED-----------SPALEAAALLDALQEGLILPLSET 359 (849)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCccC--CHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccc
Confidence 12445678888888888888886544 44554444311 23455666677777777665321
Q ss_pred ----CCcceE---eechHHHHHHH
Q 043181 205 ----SNVSRF---AMHDFINDLAH 221 (348)
Q Consensus 205 ----~~~~~~---~mh~li~~~~~ 221 (348)
.+.... -.|+.+++.+-
T Consensus 360 yr~~~~~~~~~Y~F~H~~vqqaaY 383 (849)
T COG3899 360 YRFGSNVDIATYKFLHDRVQQAAY 383 (849)
T ss_pred cccccccchhhHHhhHHHHHHHHh
Confidence 111122 57899888886
No 121
>PRK06762 hypothetical protein; Provisional
Probab=90.13 E-value=0.17 Score=40.78 Aligned_cols=15 Identities=47% Similarity=0.583 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 10 ~~GsGKST~A~~L~~ 24 (166)
T PRK06762 10 NSGSGKTTIAKQLQE 24 (166)
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999988
No 122
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.09 E-value=0.55 Score=36.44 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=22.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRIT 41 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~ 41 (348)
.|+|||+||+.++. .... ...-+.++...+..++.
T Consensus 8 ~G~GKt~l~~~la~--~~~~---~~~~i~~~~~~~~~dl~ 42 (139)
T PF07728_consen 8 PGTGKTTLARELAA--LLGR---PVIRINCSSDTTEEDLI 42 (139)
T ss_dssp SSSSHHHHHHHHHH--HHTC---EEEEEE-TTTSTHHHHH
T ss_pred CCCCHHHHHHHHHH--Hhhc---ceEEEEeccccccccce
Confidence 69999999999998 4421 23345566666655544
No 123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=90.08 E-value=0.46 Score=40.64 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=27.9
Q ss_pred CCCcHHHHHHHHhcchhhhcC----CCeeEEEEcCCCCCHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNR----FHLETWVYLFEDFDVFRITK 42 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~l~~ 42 (348)
+|.||||||.+++-....... -..++|++....++..++.+
T Consensus 28 ~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~ 72 (235)
T cd01123 28 FGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQ 72 (235)
T ss_pred CCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHH
Confidence 699999999999753222221 25788998877776554433
No 124
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=90.06 E-value=0.16 Score=44.44 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=19.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFED 34 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 34 (348)
|||||||+|..+..-...+++ .++-|+....
T Consensus 10 GGvGKTT~~~nLA~~La~~G~--kVlliD~Dpq 40 (270)
T cd02040 10 GGIGKSTTTQNLSAALAEMGK--KVMIVGCDPK 40 (270)
T ss_pred CcCCHHHHHHHHHHHHHhCCC--eEEEEEcCCC
Confidence 899999999998883332221 3455555433
No 125
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=90.03 E-value=0.25 Score=44.48 Aligned_cols=29 Identities=38% Similarity=0.472 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFED 34 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 34 (348)
+|+||||||+.+.+...-.+ ..||..+-.
T Consensus 171 pG~GKTtlArlia~tsk~~S----yrfvelSAt 199 (554)
T KOG2028|consen 171 PGTGKTTLARLIASTSKKHS----YRFVELSAT 199 (554)
T ss_pred CCCchHHHHHHHHhhcCCCc----eEEEEEecc
Confidence 69999999999999554443 345655433
No 126
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=89.84 E-value=0.17 Score=41.95 Aligned_cols=14 Identities=57% Similarity=0.755 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||+|+++..
T Consensus 8 sgSGKTTla~~L~~ 21 (194)
T PF00485_consen 8 SGSGKTTLAKRLAQ 21 (194)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999998
No 127
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=89.79 E-value=0.18 Score=40.79 Aligned_cols=15 Identities=53% Similarity=0.696 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
||+||||+|..+...
T Consensus 9 gG~GKTt~a~~LA~~ 23 (169)
T cd02037 9 GGVGKSTVAVNLALA 23 (169)
T ss_pred CcCChhHHHHHHHHH
Confidence 899999999998883
No 128
>PRK12608 transcription termination factor Rho; Provisional
Probab=89.79 E-value=0.82 Score=41.85 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=32.1
Q ss_pred CCCcHHHHHHHHhcchhhhcCC-Ce-eEEEEcCCC-CCHHHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF-HL-ETWVYLFED-FDVFRITKTMLQSIS 49 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F-~~-~~wv~~~~~-~~~~~l~~~il~~l~ 49 (348)
.|+|||||++.+.+ .+...- +. .+|+.+++. .++.++.+.+...+.
T Consensus 142 pGtGKTTLl~~la~--~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vv 190 (380)
T PRK12608 142 PRAGKTVLLQQIAA--AVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVY 190 (380)
T ss_pred CCCCHHHHHHHHHH--HHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEE
Confidence 59999999999998 444333 33 367777655 467778888776444
No 129
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=89.75 E-value=0.19 Score=40.85 Aligned_cols=16 Identities=50% Similarity=0.590 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
.||+||||+|..+...
T Consensus 8 kgG~GKtt~a~~la~~ 23 (179)
T cd02036 8 KGGVGKTTTTANLGTA 23 (179)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3899999999999883
No 130
>PRK05642 DNA replication initiation factor; Validated
Probab=89.75 E-value=1.4 Score=37.82 Aligned_cols=14 Identities=43% Similarity=0.767 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+|||.||+++++
T Consensus 54 ~G~GKTHLl~a~~~ 67 (234)
T PRK05642 54 DGVGRSHLLQAACL 67 (234)
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999987
No 131
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=89.53 E-value=0.22 Score=40.19 Aligned_cols=16 Identities=38% Similarity=0.625 Sum_probs=14.4
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
.+|.||||||.+++..
T Consensus 31 LSGsGKSTiA~ale~~ 46 (197)
T COG0529 31 LSGSGKSTIANALEEK 46 (197)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999999993
No 132
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=89.49 E-value=0.32 Score=41.98 Aligned_cols=32 Identities=31% Similarity=0.313 Sum_probs=23.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDF 35 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 35 (348)
||+||||+|..++- .....|...+.-+..+.+
T Consensus 11 GGtGKTTva~~la~--~l~~~~~~~l~DcDVe~P 42 (284)
T COG1149 11 GGTGKTTVAANLAV--LLGDKYKLVLADCDVEAP 42 (284)
T ss_pred CCCChhhHHHHHHH--HhccccceEEEecCCCCC
Confidence 89999999999988 677777655554443333
No 133
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.47 E-value=0.27 Score=25.82 Aligned_cols=17 Identities=41% Similarity=0.378 Sum_probs=10.1
Q ss_pred ccCcEeeccCCCCCCCCC
Q 043181 329 NNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 329 ~~L~~L~l~~~~~l~~lp 346 (348)
++|+.|++++| .++.+|
T Consensus 2 ~~L~~L~L~~N-~l~~lp 18 (26)
T smart00369 2 PNLRELDLSNN-QLSSLP 18 (26)
T ss_pred CCCCEEECCCC-cCCcCC
Confidence 45666666666 555555
No 134
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.47 E-value=0.27 Score=25.82 Aligned_cols=17 Identities=41% Similarity=0.378 Sum_probs=10.1
Q ss_pred ccCcEeeccCCCCCCCCC
Q 043181 329 NNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 329 ~~L~~L~l~~~~~l~~lp 346 (348)
++|+.|++++| .++.+|
T Consensus 2 ~~L~~L~L~~N-~l~~lp 18 (26)
T smart00370 2 PNLRELDLSNN-QLSSLP 18 (26)
T ss_pred CCCCEEECCCC-cCCcCC
Confidence 45666666666 555555
No 135
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=89.47 E-value=0.59 Score=40.00 Aligned_cols=16 Identities=50% Similarity=0.771 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
||+||||+|..+..-.
T Consensus 11 GGvGKTT~a~nLA~~l 26 (231)
T PRK13849 11 GGAGKTTALMGLCAAL 26 (231)
T ss_pred CCccHHHHHHHHHHHH
Confidence 8999999999988743
No 136
>PRK13947 shikimate kinase; Provisional
Probab=89.41 E-value=0.21 Score=40.43 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
|+|+||||+|+.+.+
T Consensus 9 ~~GsGKst~a~~La~ 23 (171)
T PRK13947 9 FMGTGKTTVGKRVAT 23 (171)
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999988
No 137
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=89.41 E-value=0.59 Score=39.72 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=25.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRI 40 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l 40 (348)
+|.||||+|.++..+ ....-..++|++.- .++..++
T Consensus 32 ~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 32 PGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 699999999999874 33334568898876 5555443
No 138
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=89.40 E-value=0.5 Score=40.00 Aligned_cols=34 Identities=38% Similarity=0.435 Sum_probs=19.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFD 36 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 36 (348)
||+||||+|..+....--++-|+ ++-|+...+++
T Consensus 9 GG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~n 42 (255)
T COG3640 9 GGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSN 42 (255)
T ss_pred CCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCC
Confidence 89999999999555222222232 33344444544
No 139
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=89.33 E-value=0.2 Score=43.91 Aligned_cols=14 Identities=43% Similarity=0.691 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
|||||||+|..+..
T Consensus 9 GGVGKTT~~~nLA~ 22 (268)
T TIGR01281 9 GGIGKSTTSSNLSV 22 (268)
T ss_pred CcCcHHHHHHHHHH
Confidence 89999998888776
No 140
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=89.29 E-value=0.21 Score=43.68 Aligned_cols=15 Identities=33% Similarity=0.640 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
||+||||+|..+...
T Consensus 11 GGvGKTT~a~nLA~~ 25 (264)
T PRK13231 11 GGIGKSTTVSNMAAA 25 (264)
T ss_pred CCCcHHHHHHHHhcc
Confidence 899999999999883
No 141
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=89.20 E-value=0.23 Score=39.17 Aligned_cols=15 Identities=33% Similarity=0.654 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|+||||+|+.+.+
T Consensus 7 ~~GsGKST~a~~l~~ 21 (150)
T cd02021 7 VSGSGKSTVGKALAE 21 (150)
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999988
No 142
>PRK06217 hypothetical protein; Validated
Probab=89.12 E-value=0.22 Score=40.91 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
++|.||||+|+++...
T Consensus 9 ~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 9 ASGSGTTTLGAALAER 24 (183)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3799999999999984
No 143
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=89.09 E-value=0.22 Score=42.66 Aligned_cols=15 Identities=60% Similarity=0.742 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
||+||||++..+..-
T Consensus 11 GGvG~TTltAnLA~a 25 (243)
T PF06564_consen 11 GGVGKTTLTANLAWA 25 (243)
T ss_pred CCCCHHHHHHHHHHH
Confidence 899999999999883
No 144
>PRK10037 cell division protein; Provisional
Probab=89.08 E-value=0.22 Score=43.23 Aligned_cols=15 Identities=40% Similarity=0.691 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
||+||||+|..+..-
T Consensus 11 GGvGKTT~a~nLA~~ 25 (250)
T PRK10037 11 GGVGTTSITAALAWS 25 (250)
T ss_pred CCccHHHHHHHHHHH
Confidence 899999999998873
No 145
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.07 E-value=0.26 Score=43.15 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=41.2
Q ss_pred ccCCCCccEEecCCCCCccCchhh-hccCCCCEeeccCCCcc--chhHHHhcccccCcEeeccCC
Q 043181 278 IGDLKILRYLNFSDAQVETSPESV-CKLHNLETLKLQNCNRL--QKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp~~~-~~l~~L~~L~l~~c~~l--~~lp~~i~~l~~L~~L~l~~~ 339 (348)
..+|++|++|+++.|++..-..+. -.+.+|++|-|.| +.+ ..+-+....++.++.|.++.|
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhhhhcchhhhhhhhccc
Confidence 468899999999999865322222 3567888888877 433 333345566777777777766
No 146
>PTZ00202 tuzin; Provisional
Probab=89.03 E-value=0.75 Score=43.01 Aligned_cols=43 Identities=9% Similarity=0.170 Sum_probs=31.1
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhcccc
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSISTE 51 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~~~ 51 (348)
++|+|||||++.+... .. +. .++.... ...++++.++.+++..
T Consensus 294 ~~G~GKTTLlR~~~~~--l~--~~--qL~vNpr--g~eElLr~LL~ALGV~ 336 (550)
T PTZ00202 294 FRGCGKSSLCRSAVRK--EG--MP--AVFVDVR--GTEDTLRSVVKALGVP 336 (550)
T ss_pred CCCCCHHHHHHHHHhc--CC--ce--EEEECCC--CHHHHHHHHHHHcCCC
Confidence 4799999999999973 32 21 3333333 6799999999999963
No 147
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.02 E-value=2.6 Score=43.05 Aligned_cols=44 Identities=14% Similarity=0.071 Sum_probs=27.7
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCch-hHHHH
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPL-ASEIL 112 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL-al~~i 112 (348)
+++.++....+...+-.... ... .+....|++.++|.|- |+..+
T Consensus 177 pLs~eEI~~~L~~il~~EgI-~~e---deAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 177 SLTQDEIGTQLNHILTQEQL-PFE---AEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 78888888877776533221 111 3567788999999774 44433
No 148
>PRK00131 aroK shikimate kinase; Reviewed
Probab=89.01 E-value=0.23 Score=40.14 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|.||||+|+.+..
T Consensus 12 ~~GsGKstla~~La~ 26 (175)
T PRK00131 12 FMGAGKSTIGRLLAK 26 (175)
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999998
No 149
>PRK10646 ADP-binding protein; Provisional
Probab=89.00 E-value=0.21 Score=39.54 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=12.9
Q ss_pred CCcHHHHHHHHhcc
Q 043181 3 GVGKTTLAQLLCNN 16 (348)
Q Consensus 3 GiGKTtLa~~v~~~ 16 (348)
|.||||++|.+.+.
T Consensus 38 GaGKTtf~rgl~~~ 51 (153)
T PRK10646 38 GAGKTTFSRGFLQA 51 (153)
T ss_pred CCCHHHHHHHHHHH
Confidence 89999999999883
No 150
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=88.99 E-value=0.63 Score=39.50 Aligned_cols=38 Identities=21% Similarity=0.098 Sum_probs=26.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCC------CeeEEEEcCCCCCHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF------HLETWVYLFEDFDVFRIT 41 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F------~~~~wv~~~~~~~~~~l~ 41 (348)
+|.||||||.++.-.. ...- ..++|++....++..++.
T Consensus 28 ~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~ 71 (226)
T cd01393 28 FGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV 71 (226)
T ss_pred CCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH
Confidence 6999999999987632 2222 457888887777765544
No 151
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=88.96 E-value=0.22 Score=43.88 Aligned_cols=14 Identities=43% Similarity=0.667 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
|||||||.|..+..
T Consensus 11 GGVGKTT~a~nLA~ 24 (275)
T PRK13233 11 GGIGKSTTTQNTAA 24 (275)
T ss_pred CCCcHHHHHHHHHH
Confidence 89999999998887
No 152
>PHA00729 NTP-binding motif containing protein
Probab=88.90 E-value=0.22 Score=42.14 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+||||||.++.+.
T Consensus 26 pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 26 QGSGKTTYALKVARD 40 (226)
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999983
No 153
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=88.89 E-value=0.64 Score=38.17 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=25.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC-CCCCHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF-EDFDVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~l~~~il~ 46 (348)
-|.||||+++.+++ ..+..--. +.++.. .........++++.
T Consensus 5 DGsGKtT~~~~L~~--~l~~~~~~-~~~~~~~~~~~~g~~ir~~l~ 47 (186)
T PF02223_consen 5 DGSGKTTQIRLLAE--ALKEKGYK-VIITFPPGSTPIGELIRELLR 47 (186)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTEE-EEEEESSTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH--HHHHcCCc-ccccCCCCCChHHHHHHHHHh
Confidence 49999999999999 55444323 333332 22334556666665
No 154
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=88.88 E-value=0.35 Score=39.11 Aligned_cols=15 Identities=47% Similarity=0.621 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||||++.+.+.
T Consensus 8 pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 8 PGVGKTTLLKKVIEE 22 (168)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999983
No 155
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=88.78 E-value=0.24 Score=43.51 Aligned_cols=15 Identities=40% Similarity=0.680 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
|||||||+|..+..-
T Consensus 11 GGVGKTT~~~nLA~~ 25 (270)
T PRK13185 11 GGIGKSTTSSNLSAA 25 (270)
T ss_pred CCCCHHHHHHHHHHH
Confidence 899999999988873
No 156
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=88.71 E-value=0.24 Score=43.77 Aligned_cols=16 Identities=31% Similarity=0.584 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
|||||||+|..+..-.
T Consensus 10 GGVGKTT~a~nLA~~L 25 (279)
T PRK13230 10 GGIGKSTTVCNIAAAL 25 (279)
T ss_pred CCCcHHHHHHHHHHHH
Confidence 8999999999988743
No 157
>PRK05480 uridine/cytidine kinase; Provisional
Probab=88.71 E-value=0.23 Score=41.73 Aligned_cols=14 Identities=43% Similarity=0.646 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||||+.++.
T Consensus 15 sGsGKTTl~~~l~~ 28 (209)
T PRK05480 15 SGSGKTTVASTIYE 28 (209)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 158
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=88.70 E-value=0.24 Score=42.79 Aligned_cols=14 Identities=50% Similarity=0.667 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
||+||||+|..++.
T Consensus 10 GGvGKTt~a~~LA~ 23 (251)
T TIGR01969 10 GGTGKTTITANLGV 23 (251)
T ss_pred CCCcHHHHHHHHHH
Confidence 89999999999887
No 159
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=88.64 E-value=0.48 Score=37.50 Aligned_cols=32 Identities=31% Similarity=0.324 Sum_probs=22.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDF 35 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 35 (348)
+|.||||+|+.+.. .....-..++|++.....
T Consensus 8 ~G~GKT~l~~~i~~--~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 8 TGSGKTTLALQLAL--NIATKGGKVVYVDIEEEI 39 (165)
T ss_pred CCCCHHHHHHHHHH--HHHhcCCEEEEEECCcch
Confidence 69999999999988 443333456777765543
No 160
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=88.64 E-value=0.24 Score=38.30 Aligned_cols=16 Identities=50% Similarity=0.520 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
-|.||||+++.+.+..
T Consensus 31 lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 31 LGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCCHHHHHHHHHHHc
Confidence 4999999999999843
No 161
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.62 E-value=0.095 Score=45.37 Aligned_cols=62 Identities=19% Similarity=0.180 Sum_probs=39.5
Q ss_pred cCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHH--HhcccccCcEeeccCCCCC
Q 043181 279 GDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFA--DIGNLNNLHHLDNFVTFSL 342 (348)
Q Consensus 279 ~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~--~i~~l~~L~~L~l~~~~~l 342 (348)
.+|+.|+.|.|+-|+|+++-+ +..+++|+.|-|+. +.+..|.+ -+.+|++|+.|.|..|+-.
T Consensus 38 ~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HhcccceeEEeeccccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 456677777777777777643 66667777777765 45555543 2456667777777666433
No 162
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=88.58 E-value=0.25 Score=43.51 Aligned_cols=14 Identities=50% Similarity=0.769 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
|||||||+|..+..
T Consensus 10 GGVGKTT~a~nLA~ 23 (273)
T PRK13232 10 GGIGKSTTTQNLTA 23 (273)
T ss_pred CCCcHHHHHHHHHH
Confidence 89999999998887
No 163
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=88.57 E-value=0.25 Score=43.55 Aligned_cols=17 Identities=35% Similarity=0.651 Sum_probs=14.2
Q ss_pred CCCcHHHHHHHHhcchh
Q 043181 2 GGVGKTTLAQLLCNNVK 18 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (348)
|||||||+|..+..-..
T Consensus 9 GGVGKTT~a~nLA~~La 25 (275)
T TIGR01287 9 GGIGKSTTTQNIAAALA 25 (275)
T ss_pred CcCcHHHHHHHHHHHHH
Confidence 89999999999887433
No 164
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.57 E-value=2.1 Score=42.23 Aligned_cols=41 Identities=2% Similarity=-0.078 Sum_probs=23.9
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhH
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLAS 109 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal 109 (348)
.++.++..+.+.+.+...+. ... .+..+.|++.++|.|...
T Consensus 182 ~ls~eei~~~L~~Il~~Egi-~~d---~eAL~~IA~~A~Gs~RdA 222 (700)
T PRK12323 182 QMPPGHIVSHLDAILGEEGI-AHE---VNALRLLAQAAQGSMRDA 222 (700)
T ss_pred CCChHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHH
Confidence 56777777766665432221 111 234567888888888543
No 165
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=88.56 E-value=0.28 Score=39.59 Aligned_cols=21 Identities=29% Similarity=0.521 Sum_probs=16.7
Q ss_pred CCCCcHHHHHHHHhcchhhhcCC
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRF 23 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F 23 (348)
|.|.||||+.+++++ +..-.|
T Consensus 10 ~mGaGKSTIGr~LAk--~L~~~F 30 (172)
T COG0703 10 FMGAGKSTIGRALAK--ALNLPF 30 (172)
T ss_pred CCCCCHhHHHHHHHH--HcCCCc
Confidence 579999999999998 554444
No 166
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=88.56 E-value=0.77 Score=38.78 Aligned_cols=33 Identities=18% Similarity=0.089 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFD 36 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 36 (348)
+|+||||+|.++.. .....=..++|++....++
T Consensus 28 ~GsGKT~l~~~~a~--~~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 28 PGTGKTNIAIQLAV--ETAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCCCHHHHHHHHHH--HHHhcCCeEEEEECCCCCH
Confidence 69999999999987 3333323567887654443
No 167
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=88.45 E-value=0.26 Score=40.12 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|.||||+|+.+..
T Consensus 10 ~~gsGKst~a~~l~~ 24 (175)
T cd00227 10 GSSAGKSSIARALQS 24 (175)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 168
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=88.32 E-value=0.26 Score=43.41 Aligned_cols=14 Identities=43% Similarity=0.655 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
|||||||+|..+..
T Consensus 10 GGVGKTT~~~nLA~ 23 (274)
T PRK13235 10 GGIGKSTTTQNTVA 23 (274)
T ss_pred CCccHHHHHHHHHH
Confidence 89999999998877
No 169
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=88.27 E-value=0.55 Score=40.42 Aligned_cols=20 Identities=30% Similarity=0.373 Sum_probs=16.3
Q ss_pred CCCCcHHHHHHHHhcchhhh
Q 043181 1 MGGVGKTTLAQLLCNNVKVK 20 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~ 20 (348)
++|.||||+++.+.+.....
T Consensus 4 paGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 4 PAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp STTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999954433
No 170
>PRK12377 putative replication protein; Provisional
Probab=88.22 E-value=0.43 Score=41.29 Aligned_cols=29 Identities=24% Similarity=0.198 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
.|+|||+||.++.+ .+......++++++.
T Consensus 110 ~GtGKThLa~AIa~--~l~~~g~~v~~i~~~ 138 (248)
T PRK12377 110 PGTGKNHLAAAIGN--RLLAKGRSVIVVTVP 138 (248)
T ss_pred CCCCHHHHHHHHHH--HHHHcCCCeEEEEHH
Confidence 59999999999999 444443445677654
No 171
>PRK07952 DNA replication protein DnaC; Validated
Probab=88.17 E-value=0.33 Score=41.90 Aligned_cols=28 Identities=29% Similarity=0.379 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
+|+|||+||.++.+. +...-..++++++
T Consensus 108 ~GtGKThLa~aia~~--l~~~g~~v~~it~ 135 (244)
T PRK07952 108 PGTGKNHLAAAICNE--LLLRGKSVLIITV 135 (244)
T ss_pred CCCCHHHHHHHHHHH--HHhcCCeEEEEEH
Confidence 699999999999994 4333234566644
No 172
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=88.16 E-value=1 Score=37.16 Aligned_cols=15 Identities=53% Similarity=0.804 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
-|+||||+++.+.+.
T Consensus 9 ~GsGKtT~~~~L~~~ 23 (200)
T cd01672 9 DGAGKTTLIELLAER 23 (200)
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999999984
No 173
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=88.15 E-value=0.28 Score=41.23 Aligned_cols=14 Identities=43% Similarity=0.658 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||||+++..
T Consensus 15 sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 15 SGSGKTTVARKIYE 28 (207)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999987
No 174
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.08 E-value=2.5 Score=41.80 Aligned_cols=39 Identities=8% Similarity=-0.058 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCch
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPL 107 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL 107 (348)
+++.++....+.+.+-+.+.. .. .+....|++.++|-+-
T Consensus 176 pLs~eEI~k~L~~Il~kEgI~-id---~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 176 PLAVDEITKHLGAILEKEQIA-AD---QDAIWQIAESAQGSLR 214 (702)
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCCHH
Confidence 567777766666655332211 11 2456667778887663
No 175
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=88.07 E-value=13 Score=38.32 Aligned_cols=48 Identities=10% Similarity=0.034 Sum_probs=26.4
Q ss_pred CCCCcHHHHHHHHhcchhh---hcCCC--eeEEEEcCCCCCHHHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCNNVKV---KNRFH--LETWVYLFEDFDVFRITKTMLQSI 48 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~---~~~F~--~~~wv~~~~~~~~~~l~~~il~~l 48 (348)
..|.|||+.++.|.+..+- +...+ ..++|+-..-.+...+...|..++
T Consensus 789 ~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL 841 (1164)
T PTZ00112 789 MPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQL 841 (1164)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHH
Confidence 3699999999999874321 11222 234554333334444444444444
No 176
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=88.05 E-value=0.3 Score=39.89 Aligned_cols=14 Identities=50% Similarity=0.790 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
||+||||+|..+.-
T Consensus 9 gG~GKSt~a~nLA~ 22 (179)
T cd03110 9 GGTGKTTVTAALAA 22 (179)
T ss_pred CCCCHHHHHHHHHH
Confidence 89999999999987
No 177
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=88.04 E-value=0.12 Score=45.14 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=41.8
Q ss_pred ccCCCCccEEecCCCCCcc-CchhhhccCCCCEeeccCCCccchhHH--HhcccccCcEeeccCCC
Q 043181 278 IGDLKILRYLNFSDAQVET-SPESVCKLHNLETLKLQNCNRLQKLFA--DIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~-lp~~~~~l~~L~~L~l~~c~~l~~lp~--~i~~l~~L~~L~l~~~~ 340 (348)
++++.+|+-|.+.++.+.. +-..+.+-.+|+.|+++.|+.+.+.-. -+.++++|..|++++|.
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~ 271 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF 271 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh
Confidence 3455667777777776653 555666667777777777777665543 25567777777777773
No 178
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=88.00 E-value=0.94 Score=39.51 Aligned_cols=39 Identities=18% Similarity=0.059 Sum_probs=29.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTM 44 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i 44 (348)
+|.|||++|.++.. +.......++||+..+. ...+.+..
T Consensus 32 pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~ 70 (260)
T COG0467 32 PGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENA 70 (260)
T ss_pred CCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHH
Confidence 69999999999888 55556788999998874 33444433
No 179
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=87.77 E-value=0.29 Score=40.32 Aligned_cols=14 Identities=57% Similarity=0.641 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||+|+.+..
T Consensus 8 sgsGKTtla~~l~~ 21 (187)
T cd02024 8 TNSGKTTLAKLLQR 21 (187)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999988
No 180
>PRK06547 hypothetical protein; Provisional
Probab=87.77 E-value=0.31 Score=39.62 Aligned_cols=16 Identities=50% Similarity=0.580 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
.+|.||||+|+.+.+.
T Consensus 23 ~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 23 RSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3799999999999873
No 181
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=87.66 E-value=0.32 Score=39.67 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
++|+||||+|+++...
T Consensus 9 ~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 9 PSGAGKDTLLDYARAR 24 (179)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999999873
No 182
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=87.50 E-value=3.9 Score=36.74 Aligned_cols=44 Identities=14% Similarity=0.310 Sum_probs=26.0
Q ss_pred CCCcHHHHHHHHhcch----hhhcCCCeeEEEEc-CCCCCHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNV----KVKNRFHLETWVYL-FEDFDVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~----~~~~~F~~~~wv~~-~~~~~~~~l~~~il~ 46 (348)
.|+||||+|+++++.. ....|.|...|... +....+.+ .+++..
T Consensus 35 ~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-ir~~~~ 83 (313)
T PRK05564 35 DGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-IRNIIE 83 (313)
T ss_pred CCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-HHHHHH
Confidence 5999999999998732 12355666566552 33333333 344444
No 183
>PRK06696 uridine kinase; Validated
Probab=87.46 E-value=0.3 Score=41.53 Aligned_cols=14 Identities=43% Similarity=0.503 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||+|+.+.+
T Consensus 31 sgsGKSTlA~~L~~ 44 (223)
T PRK06696 31 TASGKTTFADELAE 44 (223)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 184
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=87.40 E-value=0.43 Score=40.07 Aligned_cols=19 Identities=37% Similarity=0.511 Sum_probs=15.5
Q ss_pred CCCcHHHHHHHHhcchhhhcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNR 22 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~ 22 (348)
+|.||||+|+.+++ .+...
T Consensus 17 SgSGKTTva~~l~~--~~~~~ 35 (218)
T COG0572 17 SGSGKTTVAKELSE--QLGVE 35 (218)
T ss_pred CCCCHHHHHHHHHH--HhCcC
Confidence 69999999999998 55433
No 185
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=87.38 E-value=0.33 Score=40.92 Aligned_cols=14 Identities=50% Similarity=0.795 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
||+||||++..+..
T Consensus 9 GGvGKTt~~~nLA~ 22 (212)
T cd02117 9 GGIGKSTTSQNLSA 22 (212)
T ss_pred CcCcHHHHHHHHHH
Confidence 89999999888887
No 186
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=87.30 E-value=0.47 Score=40.39 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||+||+++++.
T Consensus 51 ~G~GKT~La~ai~~~ 65 (227)
T PRK08903 51 AGSGRSHLLQALVAD 65 (227)
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999999984
No 187
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=87.18 E-value=0.55 Score=34.72 Aligned_cols=19 Identities=47% Similarity=0.623 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHhcchhhhcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNR 22 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~ 22 (348)
||+||||+|..+.. .....
T Consensus 9 gg~gkt~~~~~la~--~~~~~ 27 (106)
T cd03111 9 GGVGATTLAANLAV--ALAKE 27 (106)
T ss_pred CCCcHHHHHHHHHH--HHHhc
Confidence 89999999999887 44443
No 188
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=87.17 E-value=0.51 Score=38.63 Aligned_cols=14 Identities=57% Similarity=0.774 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||||+.+..
T Consensus 8 sgsGKttla~~l~~ 21 (179)
T cd02028 8 SGSGKTTFAKKLSN 21 (179)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 189
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=87.17 E-value=0.38 Score=34.23 Aligned_cols=14 Identities=71% Similarity=0.923 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||++..+..
T Consensus 8 ~G~Gktt~~~~l~~ 21 (99)
T cd01983 8 GGVGKTTLAANLAA 21 (99)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 190
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.15 E-value=4.3 Score=39.18 Aligned_cols=15 Identities=47% Similarity=0.789 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+||||+|+.+.+.
T Consensus 47 ~G~GKTt~A~~lAk~ 61 (509)
T PRK14958 47 RGVGKTTISRILAKC 61 (509)
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999998873
No 191
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.04 E-value=4.1 Score=39.01 Aligned_cols=14 Identities=50% Similarity=0.721 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+.+.+
T Consensus 44 ~G~GKTT~ArilAk 57 (491)
T PRK14964 44 SGVGKTTCARIISL 57 (491)
T ss_pred CCccHHHHHHHHHH
Confidence 59999999999876
No 192
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=87.03 E-value=0.37 Score=38.62 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
.+|.||||+|+.+.+
T Consensus 6 ~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 6 VAGSGKSTIASALAH 20 (163)
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999988
No 193
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=87.03 E-value=0.34 Score=41.17 Aligned_cols=14 Identities=43% Similarity=0.480 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||+|+.+.+
T Consensus 8 sGSGKTTla~~L~~ 21 (220)
T cd02025 8 VAVGKSTTARVLQA 21 (220)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 194
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=86.99 E-value=0.69 Score=40.52 Aligned_cols=15 Identities=40% Similarity=0.638 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
|||||||+|..+..-
T Consensus 9 GGvGKTT~a~nLA~~ 23 (267)
T cd02032 9 GGIGKSTTSSNLSVA 23 (267)
T ss_pred CCCCHHHHHHHHHHH
Confidence 899999999988873
No 195
>PRK08116 hypothetical protein; Validated
Probab=86.93 E-value=0.56 Score=41.14 Aligned_cols=28 Identities=29% Similarity=0.306 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
.|+|||.||.++++ .+..+--.++++++
T Consensus 123 ~GtGKThLa~aia~--~l~~~~~~v~~~~~ 150 (268)
T PRK08116 123 VGTGKTYLAACIAN--ELIEKGVPVIFVNF 150 (268)
T ss_pred CCCCHHHHHHHHHH--HHHHcCCeEEEEEH
Confidence 59999999999999 44433334566653
No 196
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=86.79 E-value=0.36 Score=39.50 Aligned_cols=15 Identities=47% Similarity=0.685 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|.||||+|+.+.+.
T Consensus 9 pGaGK~T~A~~La~~ 23 (178)
T COG0563 9 PGAGKSTLAKKLAKK 23 (178)
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999984
No 197
>PRK00889 adenylylsulfate kinase; Provisional
Probab=86.75 E-value=0.38 Score=39.11 Aligned_cols=16 Identities=44% Similarity=0.758 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
++|.||||+|+++...
T Consensus 12 ~~GsGKST~a~~la~~ 27 (175)
T PRK00889 12 LSGAGKTTIARALAEK 27 (175)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999999984
No 198
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=86.63 E-value=0.38 Score=41.44 Aligned_cols=29 Identities=38% Similarity=0.272 Sum_probs=19.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+.. ....+=..++.|+..
T Consensus 11 GGvGKTt~a~nla~--~la~~g~~VlliD~D 39 (246)
T TIGR03371 11 GGVGKTTLTANLAS--ALKLLGEPVLAIDLD 39 (246)
T ss_pred CCccHHHHHHHHHH--HHHhCCCcEEEEeCC
Confidence 89999999999988 333221134555543
No 199
>PRK13976 thymidylate kinase; Provisional
Probab=86.61 E-value=1.1 Score=37.75 Aligned_cols=43 Identities=19% Similarity=0.194 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCC--eeEEEEcCCCCCHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFH--LETWVYLFEDFDVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~~~~~~~~~l~~~il~ 46 (348)
-|.||||+++.+++ ..+.... .+.+..-.......+.+++++.
T Consensus 9 DGsGKsTq~~~L~~--~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~ 53 (209)
T PRK13976 9 DGSGKTTQSRLLAE--YLSDIYGENNVVLTREPGGTSFNELVRGLLL 53 (209)
T ss_pred CCCCHHHHHHHHHH--HHHHhcCCcceEEeeCCCCCHHHHHHHHHHc
Confidence 49999999999999 4444321 2233333333345555555443
No 200
>PRK04040 adenylate kinase; Provisional
Probab=86.57 E-value=0.39 Score=39.67 Aligned_cols=15 Identities=40% Similarity=0.494 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|+||||+++.+.+
T Consensus 10 ~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 10 VPGVGKTTVLNKALE 24 (188)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999988
No 201
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=86.46 E-value=0.4 Score=38.58 Aligned_cols=14 Identities=29% Similarity=0.548 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||+|+.+..
T Consensus 4 sGsGKSTla~~la~ 17 (163)
T PRK11545 4 SGSGKSAVASEVAH 17 (163)
T ss_pred CCCcHHHHHHHHHH
Confidence 69999999999988
No 202
>PRK13948 shikimate kinase; Provisional
Probab=86.39 E-value=0.4 Score=39.39 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
|.|.||||+++.+.+
T Consensus 18 ~~GsGKSTvg~~La~ 32 (182)
T PRK13948 18 FMGTGKSRIGWELSR 32 (182)
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999988
No 203
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=86.26 E-value=0.4 Score=41.61 Aligned_cols=14 Identities=57% Similarity=0.715 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
||+||||+|..+..
T Consensus 11 GGvGKTt~a~~lA~ 24 (261)
T TIGR01968 11 GGVGKTTTTANLGT 24 (261)
T ss_pred CCccHHHHHHHHHH
Confidence 89999999999888
No 204
>PRK13975 thymidylate kinase; Provisional
Probab=86.26 E-value=0.41 Score=39.62 Aligned_cols=15 Identities=53% Similarity=0.771 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|+||||+|+.+.+
T Consensus 10 ~~GsGKtT~~~~L~~ 24 (196)
T PRK13975 10 IDGSGKTTQAKLLAE 24 (196)
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999999
No 205
>PRK07667 uridine kinase; Provisional
Probab=86.14 E-value=0.83 Score=37.89 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
.+|.||||+|+.+..
T Consensus 25 ~~gsGKStla~~L~~ 39 (193)
T PRK07667 25 LSRSGKTTFVANLKE 39 (193)
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999998
No 206
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=86.10 E-value=0.43 Score=37.64 Aligned_cols=15 Identities=53% Similarity=0.787 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|.||||+|+.+..
T Consensus 7 ~~GsGKstla~~la~ 21 (154)
T cd00464 7 MMGAGKTTVGRLLAK 21 (154)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 207
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=86.09 E-value=0.41 Score=39.82 Aligned_cols=14 Identities=43% Similarity=0.632 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||||+.+.+
T Consensus 8 ~GsGKSTl~~~l~~ 21 (198)
T cd02023 8 SGSGKTTVAEEIIE 21 (198)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999987
No 208
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=86.08 E-value=0.4 Score=41.92 Aligned_cols=14 Identities=50% Similarity=0.741 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||+|+.+++
T Consensus 51 pGtGKTtlA~~ia~ 64 (261)
T TIGR02881 51 PGTGKTTVARILGK 64 (261)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999987
No 209
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=86.06 E-value=0.42 Score=42.46 Aligned_cols=15 Identities=33% Similarity=0.541 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
|||||||.|..+..-
T Consensus 9 GGVGKTTta~nLA~~ 23 (290)
T CHL00072 9 GGIGKSTTSCNISIA 23 (290)
T ss_pred CCCcHHHHHHHHHHH
Confidence 899999999988873
No 210
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=86.05 E-value=2.6 Score=42.26 Aligned_cols=43 Identities=5% Similarity=0.000 Sum_probs=23.3
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCc-hhHHH
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLP-LASEI 111 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlP-Lal~~ 111 (348)
.++.++..+.+.+.....+. ... .+..+.|++.++|-. -|+..
T Consensus 177 ~Ls~eeIv~~L~~Il~~EgI-~id---~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 177 QMPAGHIVSHLERILGEERI-AFE---PQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CcCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 56677777666665433221 111 245666777777754 44444
No 211
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=86.03 E-value=0.48 Score=39.03 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|.|||||++.+..
T Consensus 10 ~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 10 PSGSGKDSLLAALRQ 24 (186)
T ss_pred CCCCCHHHHHHHHhc
Confidence 479999999999987
No 212
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=85.97 E-value=0.38 Score=38.45 Aligned_cols=14 Identities=43% Similarity=0.691 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+++.+..
T Consensus 1 ~GsGKStvg~~lA~ 14 (158)
T PF01202_consen 1 MGSGKSTVGKLLAK 14 (158)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 49999999999999
No 213
>PRK06761 hypothetical protein; Provisional
Probab=85.86 E-value=0.98 Score=39.78 Aligned_cols=16 Identities=38% Similarity=0.598 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
..|.||||+|+.+++.
T Consensus 11 ~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 11 LPGFGKSTTAKMLNDI 26 (282)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 3699999999999994
No 214
>PRK13946 shikimate kinase; Provisional
Probab=85.83 E-value=0.47 Score=39.00 Aligned_cols=15 Identities=33% Similarity=0.587 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
|.|.||||+|+.+.+
T Consensus 18 ~~GsGKsti~~~LA~ 32 (184)
T PRK13946 18 LMGAGKSTVGRRLAT 32 (184)
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999998
No 215
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=85.81 E-value=0.44 Score=37.31 Aligned_cols=14 Identities=50% Similarity=0.717 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||+|.++..
T Consensus 16 PG~GKstl~~~lae 29 (176)
T KOG3347|consen 16 PGTGKSTLAERLAE 29 (176)
T ss_pred CCCCchhHHHHHHH
Confidence 69999999999986
No 216
>PRK13949 shikimate kinase; Provisional
Probab=85.80 E-value=0.47 Score=38.44 Aligned_cols=15 Identities=47% Similarity=0.609 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
|.|.||||+++.+.+
T Consensus 9 ~~GsGKstl~~~La~ 23 (169)
T PRK13949 9 YMGAGKTTLGKALAR 23 (169)
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999998
No 217
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.75 E-value=1.3 Score=43.66 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=26.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHh
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQS 47 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~ 47 (348)
+|+||||||.-++++. .| -++=++.|++.....+-..|...
T Consensus 335 pGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~a 375 (877)
T KOG1969|consen 335 PGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENA 375 (877)
T ss_pred CCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHH
Confidence 7999999999998832 11 24456666666555554444443
No 218
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=85.74 E-value=5.1 Score=33.95 Aligned_cols=15 Identities=47% Similarity=0.736 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||.|.+++++.
T Consensus 43 ~G~GKTHLL~Ai~~~ 57 (219)
T PF00308_consen 43 SGLGKTHLLQAIANE 57 (219)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999999993
No 219
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=85.74 E-value=0.46 Score=35.55 Aligned_cols=16 Identities=50% Similarity=0.856 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
.|+|||||.+.+.+..
T Consensus 8 ~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 8 SGVGKTSLIRRLCGGE 23 (119)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999999754
No 220
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=85.70 E-value=0.48 Score=37.02 Aligned_cols=16 Identities=56% Similarity=0.632 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
.|.|||||++++-...
T Consensus 10 ~g~GKTTL~q~L~~~~ 25 (143)
T PF10662_consen 10 SGSGKTTLAQALNGEE 25 (143)
T ss_pred CCCCHHHHHHHHcCCC
Confidence 4999999999998743
No 221
>PRK10818 cell division inhibitor MinD; Provisional
Probab=85.63 E-value=0.46 Score=41.69 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=18.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+..-...++ ..++.|+..
T Consensus 12 GGvGKTt~a~nlA~~la~~g--~~vllvD~D 40 (270)
T PRK10818 12 GGVGKTTSSAAIATGLAQKG--KKTVVIDFD 40 (270)
T ss_pred CCCcHHHHHHHHHHHHHHCC--CeEEEEECC
Confidence 89999999999988333222 134455443
No 222
>CHL00181 cbbX CbbX; Provisional
Probab=85.60 E-value=0.64 Score=41.25 Aligned_cols=14 Identities=43% Similarity=0.615 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||+|+.+++
T Consensus 68 pGtGKT~lAr~la~ 81 (287)
T CHL00181 68 PGTGKTTVALKMAD 81 (287)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999987
No 223
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=85.56 E-value=0.44 Score=37.38 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=13.1
Q ss_pred CCcHHHHHHHHhcch
Q 043181 3 GVGKTTLAQLLCNNV 17 (348)
Q Consensus 3 GiGKTtLa~~v~~~~ 17 (348)
|.|||||+|.+..-.
T Consensus 35 GAGKTtf~rgi~~~L 49 (149)
T COG0802 35 GAGKTTLVRGIAKGL 49 (149)
T ss_pred cCChHHHHHHHHHHc
Confidence 899999999998843
No 224
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=85.43 E-value=0.63 Score=40.30 Aligned_cols=21 Identities=38% Similarity=0.521 Sum_probs=17.1
Q ss_pred CCCCcHHHHHHHHhcchhhhcCC
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRF 23 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F 23 (348)
|+|.||||+.+.++.+ +...+
T Consensus 27 MAGSGKTTF~QrL~~h--l~~~~ 47 (366)
T KOG1532|consen 27 MAGSGKTTFMQRLNSH--LHAKK 47 (366)
T ss_pred cCCCCchhHHHHHHHH--Hhhcc
Confidence 8999999999999984 44444
No 225
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=85.32 E-value=1.5 Score=38.25 Aligned_cols=41 Identities=24% Similarity=0.310 Sum_probs=29.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCC----CeeEEEEcCCCCCHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF----HLETWVYLFEDFDVFRITK 42 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~~l~~ 42 (348)
+|+|||.||.+++-+..+.... ..++|++-...+...++.+
T Consensus 47 ~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~ 91 (256)
T PF08423_consen 47 SGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQ 91 (256)
T ss_dssp TTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHH
T ss_pred cccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHH
Confidence 6999999999887544433222 2488999888898877764
No 226
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=85.31 E-value=1.6 Score=36.00 Aligned_cols=17 Identities=47% Similarity=0.577 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHhcchh
Q 043181 2 GGVGKTTLAQLLCNNVK 18 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (348)
-|+||||+|+.+.+...
T Consensus 12 ~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 12 DGAGKTTQANLLKKLLQ 28 (195)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 59999999999998433
No 227
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=85.27 E-value=4 Score=40.43 Aligned_cols=39 Identities=3% Similarity=-0.101 Sum_probs=24.2
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCch
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPL 107 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL 107 (348)
+++.++....+.+..-..+.. .. ......|++.++|.+-
T Consensus 177 ~Ls~~ei~~~L~~il~~e~i~-~e---~~aL~~Ia~~s~Gs~R 215 (647)
T PRK07994 177 ALDVEQIRQQLEHILQAEQIP-FE---PRALQLLARAADGSMR 215 (647)
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCCHH
Confidence 788888877777654222211 11 2456678888999774
No 228
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=85.19 E-value=0.54 Score=38.32 Aligned_cols=16 Identities=44% Similarity=0.663 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
.+|+|||||+++++.+
T Consensus 12 PSG~GKsTl~k~L~~~ 27 (191)
T COG0194 12 PSGVGKSTLVKALLED 27 (191)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 3799999999999994
No 229
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=85.13 E-value=1.4 Score=39.58 Aligned_cols=42 Identities=24% Similarity=0.244 Sum_probs=29.5
Q ss_pred CCCcHHHHHHHHhcchhhhcC----CCeeEEEEcCCCCCHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNR----FHLETWVYLFEDFDVFRITKT 43 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~l~~~ 43 (348)
+|+||||+|.+++-+...... =..++||+.-..++..++.+.
T Consensus 104 ~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~ 149 (310)
T TIGR02236 104 FGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQM 149 (310)
T ss_pred CCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHH
Confidence 699999999999764332111 126889999888887765543
No 230
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=85.12 E-value=0.52 Score=37.88 Aligned_cols=13 Identities=62% Similarity=0.841 Sum_probs=12.1
Q ss_pred CCCcHHHHHHHHh
Q 043181 2 GGVGKTTLAQLLC 14 (348)
Q Consensus 2 gGiGKTtLa~~v~ 14 (348)
+|+||||+|+.+.
T Consensus 9 PGvGKTT~~~~L~ 21 (180)
T COG1936 9 PGVGKTTVCKLLR 21 (180)
T ss_pred CCCchHHHHHHHH
Confidence 6999999999987
No 231
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.09 E-value=0.59 Score=24.69 Aligned_cols=18 Identities=39% Similarity=0.530 Sum_probs=12.9
Q ss_pred CCccEEecCCCCCccCch
Q 043181 282 KILRYLNFSDAQVETSPE 299 (348)
Q Consensus 282 ~~L~~l~l~~~~~~~lp~ 299 (348)
.+|++|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777777777777775
No 232
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.06 E-value=1.6 Score=37.37 Aligned_cols=15 Identities=47% Similarity=0.682 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|.|||.||++|+|+
T Consensus 198 pg~gktml~kava~~ 212 (408)
T KOG0727|consen 198 PGTGKTMLAKAVANH 212 (408)
T ss_pred CCCcHHHHHHHHhhc
Confidence 699999999999995
No 233
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=85.01 E-value=0.52 Score=38.55 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|+||||+|+.+..
T Consensus 7 ~pGsGKst~a~~la~ 21 (183)
T TIGR01359 7 GPGSGKGTQCAKIVE 21 (183)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 234
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=84.97 E-value=0.99 Score=34.01 Aligned_cols=15 Identities=67% Similarity=0.973 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
||+||||++..+...
T Consensus 8 gG~GKTt~a~~la~~ 22 (116)
T cd02034 8 GGVGKTTIAALLARY 22 (116)
T ss_pred CCCCHHHHHHHHHHH
Confidence 899999999999883
No 235
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=84.97 E-value=0.52 Score=38.28 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 12 ~~GaGKStl~~~La~ 26 (172)
T PRK05057 12 PMGAGKSTIGRQLAQ 26 (172)
T ss_pred CCCcCHHHHHHHHHH
Confidence 469999999999998
No 236
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=84.88 E-value=1.4 Score=39.67 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=30.1
Q ss_pred CCCcHHHHHHHHhcchhhhcCC----CeeEEEEcCCCCCHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF----HLETWVYLFEDFDVFRITKT 43 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~~~~~~~~~l~~~ 43 (348)
+|+|||++|.+++-+....... ..++|++.-..++..++.+.
T Consensus 111 ~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~ 156 (317)
T PRK04301 111 FGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQM 156 (317)
T ss_pred CCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHH
Confidence 6999999999998643222111 36889999888887776544
No 237
>CHL00175 minD septum-site determining protein; Validated
Probab=84.87 E-value=0.52 Score=41.65 Aligned_cols=14 Identities=57% Similarity=0.650 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
||+||||+|..+..
T Consensus 25 GGvGKTt~a~nLA~ 38 (281)
T CHL00175 25 GGVGKTTTTANLGM 38 (281)
T ss_pred CCCcHHHHHHHHHH
Confidence 89999999999887
No 238
>PF14516 AAA_35: AAA-like domain
Probab=84.70 E-value=8.5 Score=34.92 Aligned_cols=47 Identities=13% Similarity=0.138 Sum_probs=34.4
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHHHhhhcCC
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEILGGLLHGK 119 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~ 119 (348)
.++.+|...|....-.. .. ....+++...+||.|--+..++..+...
T Consensus 200 ~Ft~~ev~~L~~~~~~~-----~~---~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 200 DFTPEEVQELAQRYGLE-----FS---QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred CCCHHHHHHHHHhhhcc-----CC---HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 67777777777664321 11 1238899999999999999999888765
No 239
>PRK13973 thymidylate kinase; Provisional
Probab=84.61 E-value=1.9 Score=36.35 Aligned_cols=43 Identities=16% Similarity=0.123 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~ 46 (348)
-|.||||+++.+++....++ + .++...........+.+++++.
T Consensus 12 dGsGKtTq~~~l~~~l~~~g-~-~~~~~~~p~~~~~g~~ir~~l~ 54 (213)
T PRK13973 12 EGAGKSTQIRLLAERLRAAG-Y-DVLVTREPGGSPGAEAIRHVLL 54 (213)
T ss_pred CCCCHHHHHHHHHHHHHHCC-C-eEEEEECCCCCchHHHHHHHHc
Confidence 59999999999999443322 2 2223333333344555555543
No 240
>PRK13695 putative NTPase; Provisional
Probab=84.56 E-value=0.89 Score=36.89 Aligned_cols=15 Identities=47% Similarity=0.552 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||++.+++.
T Consensus 9 ~G~GKTTll~~i~~~ 23 (174)
T PRK13695 9 PGVGKTTLVLKIAEL 23 (174)
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999884
No 241
>PRK03846 adenylylsulfate kinase; Provisional
Probab=84.54 E-value=0.56 Score=39.05 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|.||||||+.+..
T Consensus 32 ~~GsGKSTla~~l~~ 46 (198)
T PRK03846 32 LSGSGKSTVAGALEE 46 (198)
T ss_pred CCCCCHHHHHHHHHH
Confidence 359999999999988
No 242
>PRK06921 hypothetical protein; Provisional
Probab=84.50 E-value=0.89 Score=39.85 Aligned_cols=28 Identities=21% Similarity=0.189 Sum_probs=20.4
Q ss_pred CCCcHHHHHHHHhcchhhhcC-CCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNR-FHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~ 31 (348)
.|+|||.||.++++ .+... -..++|++.
T Consensus 126 ~G~GKThLa~aia~--~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 126 PGSGKTHLLTAAAN--ELMRKKGVPVLYFPF 154 (266)
T ss_pred CCCcHHHHHHHHHH--HHhhhcCceEEEEEH
Confidence 59999999999999 44433 234567765
No 243
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=84.44 E-value=0.59 Score=38.93 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
.+|+||||+|+.+.+
T Consensus 11 ~~G~GKst~a~~l~~ 25 (197)
T PRK12339 11 IPGVGKTSISGYIAR 25 (197)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999998
No 244
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=84.33 E-value=0.58 Score=37.80 Aligned_cols=15 Identities=40% Similarity=0.556 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 10 ~~GsGKst~~~~la~ 24 (171)
T PRK03731 10 ARGCGKTTVGMALAQ 24 (171)
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999998
No 245
>PF00693 Herpes_TK: Thymidine kinase from herpesvirus; InterPro: IPR001889 The thymidine kinase from Herpesviridae catalyses the reaction: ATP + THYMIDINE = ADP + THYMIDINE 5'-PHOSPHATE. The enzyme is not subject to feedback inhibition by its product and the crystal structure of the enzyme from Human herpesvirus 1 (HHV-1) has been reported [].; GO: 0004797 thymidine kinase activity, 0005524 ATP binding, 0006230 TMP biosynthetic process; PDB: 1P73_B 1P75_C 1P6X_A 1P72_A 1OSN_D 1E2J_B 1KI3_A 3RDP_B 1P7C_A 3F0T_A ....
Probab=84.28 E-value=0.54 Score=41.01 Aligned_cols=14 Identities=50% Similarity=0.660 Sum_probs=12.9
Q ss_pred CCcHHHHHHHHhcc
Q 043181 3 GVGKTTLAQLLCNN 16 (348)
Q Consensus 3 GiGKTtLa~~v~~~ 16 (348)
||||||+++++.+.
T Consensus 4 GvGKTT~~~~l~~~ 17 (281)
T PF00693_consen 4 GVGKTTTLKALAEA 17 (281)
T ss_dssp TSSHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHc
Confidence 99999999999883
No 246
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=84.16 E-value=0.56 Score=38.93 Aligned_cols=18 Identities=39% Similarity=0.623 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHhcchhhhc
Q 043181 2 GGVGKTTLAQLLCNNVKVKN 21 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~ 21 (348)
+|+||||+|+++.. .++.
T Consensus 10 PgsGKTtfakeLak--~L~~ 27 (261)
T COG4088 10 PGSGKTTFAKELAK--ELRQ 27 (261)
T ss_pred CCCCchHHHHHHHH--HHHH
Confidence 69999999999998 5544
No 247
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=84.13 E-value=0.58 Score=40.53 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
++|.||||+|+++...
T Consensus 7 ~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 7 LPGVGKSTFSKELAKK 22 (249)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999999883
No 248
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=84.04 E-value=0.59 Score=43.06 Aligned_cols=19 Identities=32% Similarity=0.487 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHhcchhhhcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNR 22 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~ 22 (348)
+|+||||+|+++++ +....
T Consensus 165 pGtGKT~lakaia~--~l~~~ 183 (364)
T TIGR01242 165 PGTGKTLLAKAVAH--ETNAT 183 (364)
T ss_pred CCCCHHHHHHHHHH--hCCCC
Confidence 69999999999999 44444
No 249
>PRK06835 DNA replication protein DnaC; Validated
Probab=83.94 E-value=0.95 Score=40.96 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
.|+|||.||.++++ ++...-..++++++.
T Consensus 192 ~GtGKThLa~aIa~--~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 192 TGTGKTFLSNCIAK--ELLDRGKSVIYRTAD 220 (329)
T ss_pred CCCcHHHHHHHHHH--HHHHCCCeEEEEEHH
Confidence 59999999999999 443332356666653
No 250
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=83.90 E-value=1.1 Score=36.29 Aligned_cols=30 Identities=30% Similarity=0.275 Sum_probs=21.1
Q ss_pred CCCcHHHHHHHHhcchhhh-cCCCeeEEEEcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVK-NRFHLETWVYLFE 33 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~ 33 (348)
.|+|||.||+++.+ .+. +.....+-++.+.
T Consensus 12 sGvGKT~la~~la~--~l~~~~~~~~~~~d~s~ 42 (171)
T PF07724_consen 12 SGVGKTELAKALAE--LLFVGSERPLIRIDMSE 42 (171)
T ss_dssp TTSSHHHHHHHHHH--HHT-SSCCEEEEEEGGG
T ss_pred CCCCHHHHHHHHHH--HhccCCccchHHHhhhc
Confidence 69999999999998 444 4444555555543
No 251
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=83.88 E-value=0.66 Score=39.75 Aligned_cols=15 Identities=53% Similarity=0.713 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
||+||||.|.+++--
T Consensus 10 GGvGKSTva~~lA~a 24 (261)
T PF09140_consen 10 GGVGKSTVAVNLAVA 24 (261)
T ss_dssp TTTTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 899999999998874
No 252
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=83.74 E-value=0.68 Score=37.92 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
..|+||||+|+.+..
T Consensus 11 ~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 11 GPGSGKGTQCEKIVE 25 (188)
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 253
>PRK13236 nitrogenase reductase; Reviewed
Probab=83.70 E-value=0.62 Score=41.54 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
|||||||+|..+..
T Consensus 15 GGVGKTt~a~NLA~ 28 (296)
T PRK13236 15 GGIGKSTTSQNTLA 28 (296)
T ss_pred CcCCHHHHHHHHHH
Confidence 89999998888776
No 254
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=83.64 E-value=0.9 Score=37.60 Aligned_cols=59 Identities=24% Similarity=0.352 Sum_probs=47.5
Q ss_pred CCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhccc-ccCcEeeccCCCCCC
Q 043181 282 KILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNL-NNLHHLDNFVTFSLE 343 (348)
Q Consensus 282 ~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l-~~L~~L~l~~~~~l~ 343 (348)
.+...+||++|.+..++. +..+++|.+|.+.+ +.+.++-+.+..+ ++|..|.+.+| ++.
T Consensus 42 d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~LtnN-si~ 101 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTNN-SIQ 101 (233)
T ss_pred cccceecccccchhhccc-CCCccccceEEecC-CcceeeccchhhhccccceEEecCc-chh
Confidence 456788999999887754 77889999999998 8999998877764 46999999887 443
No 255
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=83.58 E-value=0.96 Score=36.43 Aligned_cols=26 Identities=31% Similarity=0.296 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (348)
+|+||+||.+.+|-+....+ +.+||.
T Consensus 46 SG~GKStllr~LYaNY~~d~---G~I~v~ 71 (235)
T COG4778 46 SGSGKSTLLRSLYANYLPDE---GQILVR 71 (235)
T ss_pred CCCcHHHHHHHHHhccCCCC---ceEEEE
Confidence 69999999999999876654 567774
No 256
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=83.55 E-value=0.66 Score=46.60 Aligned_cols=15 Identities=60% Similarity=0.857 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
.+|+||||+|+.+++
T Consensus 60 PpGtGKTTLA~aIA~ 74 (725)
T PRK13341 60 PPGVGKTTLARIIAN 74 (725)
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999998
No 257
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=83.53 E-value=0.63 Score=43.16 Aligned_cols=27 Identities=22% Similarity=0.163 Sum_probs=18.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (348)
|||||||.|.++..-...++. .++-|+
T Consensus 116 GGVGKTTta~nLA~~LA~~G~--rVLlID 142 (387)
T PHA02519 116 GGVYKTSSAVHTAQWLALQGH--RVLLIE 142 (387)
T ss_pred CCCcHHHHHHHHHHHHHhCCC--cEEEEe
Confidence 899999999998884333332 344555
No 258
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=83.51 E-value=0.54 Score=37.69 Aligned_cols=14 Identities=43% Similarity=0.513 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+|||||++++..
T Consensus 8 ~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 8 PSTGKTTLIEALAA 21 (163)
T ss_dssp TTSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 48999999999997
No 259
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=83.43 E-value=0.74 Score=35.84 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||++++++.
T Consensus 5 ~gsGKstl~~~l~~~ 19 (163)
T cd00880 5 TNAGKSSLLNALLGQ 19 (163)
T ss_pred CCCCHHHHHHHHhCc
Confidence 699999999999874
No 260
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=83.35 E-value=1.2 Score=38.29 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=22.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
+|.||||+.+.+.. .....|+.+.+++-
T Consensus 22 sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 22 SGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred CCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 69999999999988 67888877666644
No 261
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=83.34 E-value=0.71 Score=38.84 Aligned_cols=17 Identities=53% Similarity=0.675 Sum_probs=14.7
Q ss_pred CCCCcHHHHHHHHhcch
Q 043181 1 MGGVGKTTLAQLLCNNV 17 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (348)
.+|+|||||+.++.++.
T Consensus 13 ~~g~GKTtl~~~l~~~~ 29 (219)
T COG1100 13 DGGVGKTTLLNRLVGDE 29 (219)
T ss_pred CCCccHHHHHHHHhcCc
Confidence 48999999999999853
No 262
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=83.31 E-value=0.71 Score=36.50 Aligned_cols=15 Identities=40% Similarity=0.623 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|.||||+|+.+...
T Consensus 8 ~GsGKSTla~~L~~~ 22 (149)
T cd02027 8 SGSGKSTIARALEEK 22 (149)
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999883
No 263
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=83.31 E-value=2.3 Score=36.76 Aligned_cols=51 Identities=22% Similarity=0.319 Sum_probs=35.2
Q ss_pred CCCcHHHHHHHHhcch-----------------------------hhhcCCCeeEEEEc------CCCC-----CHHHHH
Q 043181 2 GGVGKTTLAQLLCNNV-----------------------------KVKNRFHLETWVYL------FEDF-----DVFRIT 41 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~-----------------------------~~~~~F~~~~wv~~------~~~~-----~~~~l~ 41 (348)
.|.|||-+|+++.|.. +.+..-+|++|++- .+.+ |+.++.
T Consensus 160 pGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiV 239 (368)
T COG1223 160 PGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIV 239 (368)
T ss_pred CCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHH
Confidence 6999999999999953 12233378888862 2222 677788
Q ss_pred HHHHHhccccc
Q 043181 42 KTMLQSISTEA 52 (348)
Q Consensus 42 ~~il~~l~~~~ 52 (348)
..++..+.+..
T Consensus 240 NALLTelDgi~ 250 (368)
T COG1223 240 NALLTELDGIK 250 (368)
T ss_pred HHHHHhccCcc
Confidence 88888776544
No 264
>PRK06620 hypothetical protein; Validated
Probab=83.18 E-value=0.7 Score=39.05 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
.|+|||+|++++++..
T Consensus 53 ~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 53 SSSGKTYLTKIWQNLS 68 (214)
T ss_pred CCCCHHHHHHHHHhcc
Confidence 6999999999988843
No 265
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=83.17 E-value=0.71 Score=36.01 Aligned_cols=15 Identities=47% Similarity=0.722 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
..|.||||+|+.+..
T Consensus 7 ~~GsGKst~a~~la~ 21 (147)
T cd02020 7 PAGSGKSTVAKLLAK 21 (147)
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 266
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=83.15 E-value=0.78 Score=37.37 Aligned_cols=14 Identities=50% Similarity=0.762 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||||+.+.+
T Consensus 10 ~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 10 SGVGKSTLVKALLE 23 (180)
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999998
No 267
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=83.09 E-value=0.65 Score=43.12 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=18.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (348)
|||||||+|..+..-...++. .++-|+
T Consensus 116 GGVGKTT~a~nLA~~LA~~G~--rVLlID 142 (388)
T PRK13705 116 GGVYKTSVSVHLAQDLALKGL--RVLLVE 142 (388)
T ss_pred CCchHHHHHHHHHHHHHhcCC--CeEEEc
Confidence 899999999998884333332 344454
No 268
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=83.04 E-value=1 Score=39.92 Aligned_cols=14 Identities=43% Similarity=0.577 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||+|+.+++
T Consensus 67 pGTGKT~lA~~ia~ 80 (284)
T TIGR02880 67 PGTGKTTVALRMAQ 80 (284)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999988877
No 269
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=82.88 E-value=11 Score=34.10 Aligned_cols=40 Identities=18% Similarity=0.149 Sum_probs=25.4
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHH
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEIL 112 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~i 112 (348)
+++.+++.+.+.... ... . .+.+..++..++|.|.....+
T Consensus 164 ~~~~~~~~~~L~~~~-~~~---~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 164 LPSNEESLQWLQQAL-PES---D----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred CcCHHHHHHHHHHhc-ccC---C----hHHHHHHHHHcCCCHHHHHHH
Confidence 677888887777643 111 1 233567788999999755444
No 270
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=82.87 E-value=1.3 Score=39.84 Aligned_cols=34 Identities=21% Similarity=0.094 Sum_probs=25.1
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDV 37 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 37 (348)
+|+||||||.+++-. .+..-..++|++.-..++.
T Consensus 64 ~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~ 97 (325)
T cd00983 64 ESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDP 97 (325)
T ss_pred CCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHH
Confidence 699999999998773 3333346789987776665
No 271
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=82.81 E-value=0.69 Score=43.00 Aligned_cols=29 Identities=31% Similarity=0.290 Sum_probs=18.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+..-....++ .++.|+..
T Consensus 114 GGvGKTT~a~nLA~~La~~G~--rVLlID~D 142 (387)
T TIGR03453 114 GGSGKTTTAAHLAQYLALRGY--RVLAIDLD 142 (387)
T ss_pred CCcCHHHHHHHHHHHHHhcCC--CEEEEecC
Confidence 899999999998873332221 34455543
No 272
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=82.76 E-value=1.4 Score=35.97 Aligned_cols=30 Identities=30% Similarity=0.256 Sum_probs=20.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFE 33 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 33 (348)
+|.|||+||.++.......+ ..++|++...
T Consensus 8 ~G~GKT~l~~~~~~~~~~~g--~~v~~~s~e~ 37 (187)
T cd01124 8 PGTGKTTFALQFLYAGLARG--EPGLYVTLEE 37 (187)
T ss_pred CCCCHHHHHHHHHHHHHHCC--CcEEEEECCC
Confidence 69999999999876332222 3567887655
No 273
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=82.76 E-value=1.3 Score=39.49 Aligned_cols=29 Identities=17% Similarity=0.014 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+.. ....+=..++-|+..
T Consensus 9 GGvGKTT~a~nLA~--~La~~g~rVLlID~D 37 (296)
T TIGR02016 9 GGSGKSFTTTNLSH--MMAEMGKRVLQLGCD 37 (296)
T ss_pred CCCCHHHHHHHHHH--HHHHCCCeEEEEEec
Confidence 89999999999988 343332234455443
No 274
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=82.73 E-value=0.78 Score=33.95 Aligned_cols=13 Identities=54% Similarity=0.698 Sum_probs=11.9
Q ss_pred CCCcHHHHHHHHh
Q 043181 2 GGVGKTTLAQLLC 14 (348)
Q Consensus 2 gGiGKTtLa~~v~ 14 (348)
+|.|||||++.+.
T Consensus 24 SGsGKSTLl~~l~ 36 (107)
T cd00820 24 SGIGKTELALELI 36 (107)
T ss_pred CCCCHHHHHHHhh
Confidence 6999999999976
No 275
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=82.72 E-value=1.2 Score=38.01 Aligned_cols=14 Identities=57% Similarity=0.871 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||||+.+.-
T Consensus 42 SGsGKSTL~r~l~G 55 (252)
T COG1124 42 SGSGKSTLARLLAG 55 (252)
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999987
No 276
>PRK13768 GTPase; Provisional
Probab=82.67 E-value=1.4 Score=38.23 Aligned_cols=16 Identities=44% Similarity=0.582 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
.||+||||++..+...
T Consensus 10 ~~G~GKTt~~~~~~~~ 25 (253)
T PRK13768 10 TAGSGKTTLTKALSDW 25 (253)
T ss_pred CCCccHHHHHHHHHHH
Confidence 3899999999998873
No 277
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=82.60 E-value=0.7 Score=40.42 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=22.1
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRIT 41 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~ 41 (348)
+|+|||++|+++.+ .... ....++...+.+..+++
T Consensus 30 ~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 30 AGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred CCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 69999999999987 3321 23445555554444443
No 278
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=82.56 E-value=1.1 Score=43.24 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|.|||-||++|+|.
T Consensus 554 PGCGKTLlAKAVANE 568 (802)
T KOG0733|consen 554 PGCGKTLLAKAVANE 568 (802)
T ss_pred CCccHHHHHHHHhhh
Confidence 699999999999994
No 279
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=82.52 E-value=6.4 Score=34.04 Aligned_cols=14 Identities=36% Similarity=0.482 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.|||-+|++.+.
T Consensus 214 PGTGKTlmARAcAa 227 (424)
T KOG0652|consen 214 PGTGKTLMARACAA 227 (424)
T ss_pred CCCcHHHHHHHHHH
Confidence 69999999999876
No 280
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=82.49 E-value=2.2 Score=37.42 Aligned_cols=45 Identities=11% Similarity=0.107 Sum_probs=31.0
Q ss_pred CCCcHHHHHHHHhcchhh--hcCCCeeEEEEcCCCC-CHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKV--KNRFHLETWVYLFEDF-DVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~~~~~-~~~~l~~~il~ 46 (348)
+|+|||||+..+.++..+ ++.-+.++++.+++.. +..++.+++..
T Consensus 78 ~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~ 125 (276)
T cd01135 78 SGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEE 125 (276)
T ss_pred CCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhh
Confidence 599999999998884331 2335778899998765 45555555444
No 281
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=82.39 E-value=2.7 Score=36.60 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=32.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhcccc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSISTE 51 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~~~ 51 (348)
+|+||||+|.++..+...... ..++|++. ..+..++...++......
T Consensus 28 pg~GKT~~~l~ia~~~a~~~~-~~vly~Sl--Em~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 28 PGVGKTAFALQIALNAALNGG-YPVLYFSL--EMSEEELAARLLARLSGV 74 (259)
T ss_dssp TTSSHHHHHHHHHHHHHHTTS-SEEEEEES--SS-HHHHHHHHHHHHHTS
T ss_pred ccCCchHHHHHHHHHHHHhcC-CeEEEEcC--CCCHHHHHHHHHHHhhcc
Confidence 699999999999996555432 45555554 345667777777776544
No 282
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=82.30 E-value=1.4 Score=35.07 Aligned_cols=15 Identities=40% Similarity=0.452 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+||||++.++...
T Consensus 8 ~gsGKTtl~~~l~~~ 22 (155)
T TIGR00176 8 KNSGKTTLIERLVKA 22 (155)
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999999993
No 283
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=82.27 E-value=1.7 Score=37.78 Aligned_cols=29 Identities=28% Similarity=0.233 Sum_probs=19.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|.++... ....=..++.|+..
T Consensus 9 gG~GKtt~a~~la~~--~a~~g~~vLlvd~D 37 (254)
T cd00550 9 GGVGKTTISAATAVR--LAEQGKKVLLVSTD 37 (254)
T ss_pred CCchHHHHHHHHHHH--HHHCCCCceEEeCC
Confidence 899999999999884 33332345566543
No 284
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=82.13 E-value=2 Score=40.69 Aligned_cols=44 Identities=23% Similarity=0.193 Sum_probs=31.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCC-CHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDF-DVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~l~~~il~ 46 (348)
+|+|||||+..+.++.... +-+.++++.+++.. ++.++..++..
T Consensus 152 ~G~GKt~Ll~~~~~~~~~~-~~dv~V~~liGER~rEv~ef~~~~~~ 196 (461)
T PRK12597 152 AGVGKTVLMMELIFNISKQ-HSGSSVFAGVGERSREGHELYHEMKE 196 (461)
T ss_pred CCCChhHHHHHHHHHHHhh-CCCEEEEEcCCcchHHHHHHHHHHHh
Confidence 5999999999988854433 56788888887664 45666666654
No 285
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=82.01 E-value=2 Score=39.98 Aligned_cols=14 Identities=50% Similarity=0.736 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+++..
T Consensus 56 pG~GKT~lAraLA~ 69 (441)
T TIGR00390 56 TGVGKTEIARRLAK 69 (441)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 286
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=81.99 E-value=0.75 Score=42.78 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||++|+++++
T Consensus 174 pGtGKT~lAkaia~ 187 (389)
T PRK03992 174 PGTGKTLLAKAVAH 187 (389)
T ss_pred CCCChHHHHHHHHH
Confidence 69999999999998
No 287
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=81.95 E-value=1.9 Score=39.27 Aligned_cols=46 Identities=22% Similarity=0.197 Sum_probs=31.8
Q ss_pred CCCcHHHHHHHHhcchhhh---c-CCCeeEEEEcCCCCCHHHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCNNVKVK---N-RFHLETWVYLFEDFDVFRITKTMLQSI 48 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~~~~l~~~il~~l 48 (348)
.|+|||+|+.+++-+.... + .-..++|++.-..|++.++.+. ++.+
T Consensus 135 ~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~i-a~~~ 184 (344)
T PLN03187 135 FRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPI-AERF 184 (344)
T ss_pred CCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHH-HHHc
Confidence 6999999999986433321 1 1235789999998998887654 4443
No 288
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=81.92 E-value=1.3 Score=36.25 Aligned_cols=28 Identities=29% Similarity=0.292 Sum_probs=18.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
.|+|||.||.++.+..-.++ ..+.|+++
T Consensus 56 ~G~GKThLa~ai~~~~~~~g--~~v~f~~~ 83 (178)
T PF01695_consen 56 PGTGKTHLAVAIANEAIRKG--YSVLFITA 83 (178)
T ss_dssp TTSSHHHHHHHHHHHHHHTT----EEEEEH
T ss_pred HhHHHHHHHHHHHHHhccCC--cceeEeec
Confidence 59999999999998432222 23566653
No 289
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.87 E-value=0.44 Score=39.32 Aligned_cols=35 Identities=26% Similarity=0.331 Sum_probs=20.1
Q ss_pred cCCCCEeeccCCCccchhHH-HhcccccCcEeeccC
Q 043181 304 LHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFV 338 (348)
Q Consensus 304 l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~ 338 (348)
.++|+.|++++|+.+++-=- .+..+++|+.|.+++
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 45677777777766654321 345556666665554
No 290
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=81.84 E-value=3.1 Score=36.81 Aligned_cols=29 Identities=24% Similarity=0.209 Sum_probs=19.0
Q ss_pred CCCcHHHHHHHHhcchhhh-cCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVK-NRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~ 31 (348)
+|+||||++..+......+ +.+ .+..++.
T Consensus 203 tGvGKTTt~~kLa~~~~~~~g~~-~V~li~~ 232 (282)
T TIGR03499 203 TGVGKTTTLAKLAARFVLEHGNK-KVALITT 232 (282)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCC-eEEEEEC
Confidence 6999999999998744333 222 3455554
No 291
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.77 E-value=0.078 Score=44.66 Aligned_cols=66 Identities=14% Similarity=0.036 Sum_probs=55.3
Q ss_pred CCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~ 340 (348)
+...++.++.|..|+++.|.+..+|+.++.+..+..+++-. +....+|-+.+.++.++++++.++.
T Consensus 57 ~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 57 LGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQKKTE 122 (326)
T ss_pred hccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhhccCc
Confidence 45566777788888999888888999999888888888876 7788999999999999998887774
No 292
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=81.73 E-value=2.2 Score=38.88 Aligned_cols=43 Identities=23% Similarity=0.395 Sum_probs=37.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSIS 49 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~ 49 (348)
+|.|||.+.+++++.... ..+|++..+.+..+.++..|+.+..
T Consensus 39 sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 39 SGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKSQ 81 (438)
T ss_pred CCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHhc
Confidence 599999999999995422 4689999999999999999999986
No 293
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=81.73 E-value=2.1 Score=39.33 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=37.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCe--eEEEEcCCCCCHHHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHL--ETWVYLFEDFDVFRITKTMLQSIS 49 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~~~~~~~~~l~~~il~~l~ 49 (348)
.|.|||+.++.|.+ +++..... .++|+.-......++...|+++++
T Consensus 51 ~GTGKT~~~~~v~~--~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~ 98 (366)
T COG1474 51 TGTGKTATVKFVME--ELEESSANVEVVYINCLELRTPYQVLSKILNKLG 98 (366)
T ss_pred CCCCHhHHHHHHHH--HHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcC
Confidence 59999999999999 55554332 578887777888999999999886
No 294
>PRK14532 adenylate kinase; Provisional
Probab=81.69 E-value=0.86 Score=37.47 Aligned_cols=15 Identities=33% Similarity=0.286 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|.||||+|+.+..
T Consensus 8 ~pGsGKsT~a~~la~ 22 (188)
T PRK14532 8 PPAAGKGTQAKRLVE 22 (188)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 295
>PLN02924 thymidylate kinase
Probab=81.67 E-value=2.4 Score=35.96 Aligned_cols=44 Identities=20% Similarity=0.200 Sum_probs=25.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~ 46 (348)
-|.||||+|+.+++..+.++ +....+-..+......+.+++++.
T Consensus 25 DGsGKsTq~~~L~~~l~~~g-~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 25 DRSGKSTQCAKLVSFLKGLG-VAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCCCHHHHHHHHHHHHHhcC-CCceeeeCCCCCChHHHHHHHHHh
Confidence 49999999999999554432 333222112223445556666554
No 296
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=81.63 E-value=1.6 Score=39.24 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDV 37 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 37 (348)
.|+||||||.++... ....=..++|++.-+.++.
T Consensus 64 ~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 64 ESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP 97 (321)
T ss_pred CCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHH
Confidence 599999999998773 3333345678877665554
No 297
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=81.61 E-value=0.97 Score=35.17 Aligned_cols=14 Identities=50% Similarity=0.707 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||++.+..
T Consensus 8 sGsGKstl~~~L~~ 21 (137)
T cd00071 8 SGVGKSTLLKRLLE 21 (137)
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999988
No 298
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=81.57 E-value=0.86 Score=35.66 Aligned_cols=17 Identities=29% Similarity=0.587 Sum_probs=14.7
Q ss_pred CCCcHHHHHHHHhcchhhh
Q 043181 2 GGVGKTTLAQLLCNNVKVK 20 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (348)
+|.||||++++++. +..
T Consensus 4 sG~GKStvg~~lA~--~lg 20 (161)
T COG3265 4 SGSGKSTVGSALAE--RLG 20 (161)
T ss_pred CccCHHHHHHHHHH--HcC
Confidence 59999999999998 544
No 299
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=81.55 E-value=0.82 Score=42.73 Aligned_cols=17 Identities=41% Similarity=0.587 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHhcchh
Q 043181 2 GGVGKTTLAQLLCNNVK 18 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (348)
||+||||.|.++..-..
T Consensus 131 GGvGKTTta~nLA~~LA 147 (405)
T PRK13869 131 GGSGKTTTSAHLAQYLA 147 (405)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 89999999999887433
No 300
>PRK05973 replicative DNA helicase; Provisional
Probab=81.52 E-value=2.9 Score=35.83 Aligned_cols=39 Identities=21% Similarity=0.156 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTM 44 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i 44 (348)
+|+||||+|.++..+.. +.. ..+++++.-. +..++...+
T Consensus 73 PG~GKT~lalqfa~~~a-~~G-e~vlyfSlEe--s~~~i~~R~ 111 (237)
T PRK05973 73 PGHGKTLLGLELAVEAM-KSG-RTGVFFTLEY--TEQDVRDRL 111 (237)
T ss_pred CCCCHHHHHHHHHHHHH-hcC-CeEEEEEEeC--CHHHHHHHH
Confidence 69999999999876432 222 2455665544 345555554
No 301
>PRK14530 adenylate kinase; Provisional
Probab=81.32 E-value=0.88 Score=38.41 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 11 ~pGsGKsT~~~~La~ 25 (215)
T PRK14530 11 APGAGKGTQSSNLAE 25 (215)
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 302
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=81.25 E-value=1.8 Score=40.39 Aligned_cols=14 Identities=50% Similarity=0.736 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+++..
T Consensus 59 ~G~GKT~LAr~LAk 72 (443)
T PRK05201 59 TGVGKTEIARRLAK 72 (443)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999988
No 303
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=81.19 E-value=1.6 Score=39.12 Aligned_cols=63 Identities=22% Similarity=0.210 Sum_probs=30.6
Q ss_pred cccCCCCccEEecCCCCCcc-----Cchhh-hccCCCCEeeccCCCcc----chhHHHhcccccCcEeeccCC
Q 043181 277 EIGDLKILRYLNFSDAQVET-----SPESV-CKLHNLETLKLQNCNRL----QKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~~~-----lp~~~-~~l~~L~~L~l~~c~~l----~~lp~~i~~l~~L~~L~l~~~ 339 (348)
.++.+++|+.+++++|.++. +-..+ ...++|++|.+.+|.-- .-+-..+...+.|+.|++++|
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc
Confidence 34445555555555554431 11111 12455666665553211 112224556777777888777
No 304
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=81.04 E-value=0.72 Score=40.56 Aligned_cols=61 Identities=23% Similarity=0.307 Sum_probs=42.9
Q ss_pred cCCCCccEEecCCCC-Cc-cCchhhhccCCCCEeeccCCCccchhHH---HhcccccCcEeeccCCCC
Q 043181 279 GDLKILRYLNFSDAQ-VE-TSPESVCKLHNLETLKLQNCNRLQKLFA---DIGNLNNLHHLDNFVTFS 341 (348)
Q Consensus 279 ~~l~~L~~l~l~~~~-~~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~---~i~~l~~L~~L~l~~~~~ 341 (348)
...++|..|||+.+- ++ ..-..+-+++.|++|+++.|..+ .|. .++..++|.+|++.+|.+
T Consensus 310 ~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 310 RRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEeccccC
Confidence 456778888888875 43 24455678888888888888754 233 356777888888888743
No 305
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=80.98 E-value=3 Score=34.67 Aligned_cols=48 Identities=23% Similarity=0.162 Sum_probs=30.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC-CCCCHHHHHHHHHHhcccc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF-EDFDVFRITKTMLQSISTE 51 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~-~~~~~~~l~~~il~~l~~~ 51 (348)
.|+||||.+..++.....+ =..+..++.. ....-.+.++...+.++.+
T Consensus 10 tGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 10 TGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp TTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 6999999888777743333 2345666653 3334566777777777755
No 306
>PRK04182 cytidylate kinase; Provisional
Probab=80.83 E-value=0.95 Score=36.70 Aligned_cols=15 Identities=53% Similarity=0.700 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 8 ~~GsGKstia~~la~ 22 (180)
T PRK04182 8 PPGSGKTTVARLLAE 22 (180)
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999988
No 307
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=80.69 E-value=1.8 Score=39.06 Aligned_cols=14 Identities=50% Similarity=0.714 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
||+||||+|..+..
T Consensus 103 GGvGkTT~a~nLA~ 116 (322)
T TIGR03815 103 GGAGASTLAAALAL 116 (322)
T ss_pred CCCcHHHHHHHHHH
Confidence 89999999999887
No 308
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=80.55 E-value=1.9 Score=39.23 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHhcchhhhcC---C-CeeEEEEcCCCCCHHHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNR---F-HLETWVYLFEDFDVFRITKTMLQSI 48 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~---F-~~~~wv~~~~~~~~~~l~~~il~~l 48 (348)
+|+|||+||..++-+...... - ..++|++.-..+++.++.+ +++.+
T Consensus 132 ~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~q-ia~~~ 181 (342)
T PLN03186 132 FRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQ-IAERF 181 (342)
T ss_pred CCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHH-HHHHc
Confidence 699999999988753332111 1 2588999999888877643 34433
No 309
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=80.51 E-value=0.97 Score=40.30 Aligned_cols=14 Identities=43% Similarity=0.631 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
|||||||.|..+..
T Consensus 13 GGvGKTt~~~nLa~ 26 (295)
T PRK13234 13 GGIGKSTTSQNTLA 26 (295)
T ss_pred CCccHHHHHHHHHH
Confidence 89999998888766
No 310
>PRK00698 tmk thymidylate kinase; Validated
Probab=80.43 E-value=3.1 Score=34.52 Aligned_cols=16 Identities=38% Similarity=0.518 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
.|.||||+++.+.+..
T Consensus 12 ~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 12 DGAGKSTQIELLKELL 27 (205)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5999999999999843
No 311
>PRK00300 gmk guanylate kinase; Provisional
Probab=80.36 E-value=1 Score=37.64 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+||||||+.+...
T Consensus 14 sGsGKstl~~~l~~~ 28 (205)
T PRK00300 14 SGAGKSTLVKALLER 28 (205)
T ss_pred CCCCHHHHHHHHHhh
Confidence 699999999999983
No 312
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=80.25 E-value=1 Score=37.73 Aligned_cols=14 Identities=36% Similarity=0.242 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
||+||||+|..+..
T Consensus 45 gG~GkSt~a~nLA~ 58 (207)
T TIGR03018 45 PGEGKSFTAINLAI 58 (207)
T ss_pred CCCCHHHHHHHHHH
Confidence 89999999998887
No 313
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=80.18 E-value=1.1 Score=35.71 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+.++.+.
T Consensus 9 ~~~GKTsli~~~~~~ 23 (164)
T smart00173 9 GGVGKSALTIQFVQG 23 (164)
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998763
No 314
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=80.17 E-value=1.5 Score=36.71 Aligned_cols=30 Identities=20% Similarity=0.141 Sum_probs=22.6
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCeeEEEE
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHLETWVY 30 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (348)
.+|.|||.||.+..-+.-..+.|+..+++.
T Consensus 27 ~AGTGKT~LA~a~Al~~v~~g~~~kiii~R 56 (205)
T PF02562_consen 27 PAGTGKTFLALAAALELVKEGEYDKIIITR 56 (205)
T ss_dssp -TTSSTTHHHHHHHHHHHHTTS-SEEEEEE
T ss_pred CCCCcHHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 379999999999887665668888777664
No 315
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=80.17 E-value=1.1 Score=35.51 Aligned_cols=15 Identities=40% Similarity=0.707 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+.++.++
T Consensus 9 ~~~GKTsl~~~l~~~ 23 (164)
T cd04139 9 GGVGKSALTLQFMYD 23 (164)
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999864
No 316
>PRK09183 transposase/IS protein; Provisional
Probab=80.14 E-value=1.6 Score=38.11 Aligned_cols=15 Identities=53% Similarity=0.605 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||+||.++.+.
T Consensus 111 ~GtGKThLa~al~~~ 125 (259)
T PRK09183 111 SGVGKTHLAIALGYE 125 (259)
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999873
No 317
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=80.12 E-value=3.4 Score=35.36 Aligned_cols=44 Identities=20% Similarity=0.194 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSI 48 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l 48 (348)
+|+||||+|.++..+...+.. ..++|++.-. +..++.++++...
T Consensus 22 ~G~GKT~~~~~~~~~~~~~~g-~~vly~s~E~--~~~~~~~r~~~~~ 65 (242)
T cd00984 22 PSMGKTAFALNIAENIAKKQG-KPVLFFSLEM--SKEQLLQRLLASE 65 (242)
T ss_pred CCCCHHHHHHHHHHHHHHhCC-CceEEEeCCC--CHHHHHHHHHHHh
Confidence 699999999998775433312 2456666554 5566666665543
No 318
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=80.03 E-value=1 Score=38.43 Aligned_cols=14 Identities=50% Similarity=0.707 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.|||||++.+..
T Consensus 42 ~GsGKTTl~~~L~~ 55 (229)
T PRK09270 42 PGAGKSTLAEFLEA 55 (229)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 319
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=79.87 E-value=1.2 Score=42.30 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
+|.|||-||++|+-..
T Consensus 346 PGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 346 PGTGKTLLARAVAGEA 361 (752)
T ss_pred CCCchhHHHHHhhccc
Confidence 6999999999998754
No 320
>PRK07933 thymidylate kinase; Validated
Probab=79.86 E-value=2.9 Score=35.25 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=14.5
Q ss_pred CCCcHHHHHHHHhcchh
Q 043181 2 GGVGKTTLAQLLCNNVK 18 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (348)
-|+||||+++.+.+...
T Consensus 9 dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 9 DGAGKRTLTEALRAALE 25 (213)
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 49999999999999443
No 321
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=79.86 E-value=1.1 Score=36.53 Aligned_cols=14 Identities=21% Similarity=0.487 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||+++.+..
T Consensus 12 sGsGKSTl~~~la~ 25 (176)
T PRK09825 12 SGSGKSLIGSKIAA 25 (176)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 322
>PRK08939 primosomal protein DnaI; Reviewed
Probab=79.76 E-value=1.6 Score=39.10 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=20.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
.|+|||.||.++++. +...=..+.|++++
T Consensus 165 ~G~GKThLa~Aia~~--l~~~g~~v~~~~~~ 193 (306)
T PRK08939 165 FGVGKSYLLAAIANE--LAKKGVSSTLLHFP 193 (306)
T ss_pred CCCCHHHHHHHHHHH--HHHcCCCEEEEEHH
Confidence 599999999999994 43322235666553
No 323
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=79.73 E-value=1 Score=42.38 Aligned_cols=20 Identities=40% Similarity=0.610 Sum_probs=16.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF 23 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F 23 (348)
.|.|||++|+++++ +....|
T Consensus 226 PGTGKT~LAraIA~--el~~~f 245 (438)
T PTZ00361 226 PGTGKTLLAKAVAN--ETSATF 245 (438)
T ss_pred CCCCHHHHHHHHHH--hhCCCE
Confidence 69999999999999 554444
No 324
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=79.70 E-value=1.1 Score=36.95 Aligned_cols=15 Identities=40% Similarity=0.410 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 7 ~pGsGKst~a~~La~ 21 (194)
T cd01428 7 PPGSGKGTQAERLAK 21 (194)
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999988
No 325
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=79.56 E-value=1.8 Score=36.05 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=16.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETW 28 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~w 28 (348)
.|.||||++.++.+ .+.......++
T Consensus 10 tGSGKTTll~~ll~--~~~~~~~~~i~ 34 (198)
T cd01131 10 TGSGKSTTLAAMID--YINKNKTHHIL 34 (198)
T ss_pred CCCCHHHHHHHHHH--HhhhcCCcEEE
Confidence 59999999998877 44333333433
No 326
>PTZ00088 adenylate kinase 1; Provisional
Probab=79.47 E-value=1.1 Score=38.27 Aligned_cols=15 Identities=47% Similarity=0.727 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|+||||+|+.+.+
T Consensus 14 ~PGsGK~T~a~~La~ 28 (229)
T PTZ00088 14 APGVGKGTFAEILSK 28 (229)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 327
>PRK11670 antiporter inner membrane protein; Provisional
Probab=79.45 E-value=1.1 Score=41.31 Aligned_cols=14 Identities=50% Similarity=0.655 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
||+||||+|..+.-
T Consensus 117 GGVGKTT~avNLA~ 130 (369)
T PRK11670 117 GGVGKSSTAVNLAL 130 (369)
T ss_pred CCCCHHHHHHHHHH
Confidence 89999999999887
No 328
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=79.26 E-value=1.2 Score=35.31 Aligned_cols=15 Identities=33% Similarity=0.784 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+.++.+.
T Consensus 9 ~~vGKTsli~~l~~~ 23 (168)
T cd04119 9 SGVGKSCIIKRYCEG 23 (168)
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999874
No 329
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=79.23 E-value=1.3 Score=38.45 Aligned_cols=30 Identities=27% Similarity=0.212 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFE 33 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 33 (348)
+|+|||.||.++.+. +...=--+.|+++.+
T Consensus 114 ~G~GKThLa~Ai~~~--l~~~g~sv~f~~~~e 143 (254)
T COG1484 114 PGVGKTHLAIAIGNE--LLKAGISVLFITAPD 143 (254)
T ss_pred CCCcHHHHHHHHHHH--HHHcCCeEEEEEHHH
Confidence 599999999999994 432212455665443
No 330
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=79.22 E-value=1 Score=38.14 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
-|+||||+|+.+.+.
T Consensus 8 ~GsGKSTl~~~L~~~ 22 (219)
T cd02030 8 IASGKGKLAKELAEK 22 (219)
T ss_pred CCCCHHHHHHHHHHH
Confidence 499999999999873
No 331
>PRK08181 transposase; Validated
Probab=79.21 E-value=1.5 Score=38.37 Aligned_cols=28 Identities=18% Similarity=0.063 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
.|+|||.||.++.+ ........+.|+++
T Consensus 115 ~GtGKTHLa~Aia~--~a~~~g~~v~f~~~ 142 (269)
T PRK08181 115 PGGGKSHLAAAIGL--ALIENGWRVLFTRT 142 (269)
T ss_pred CCCcHHHHHHHHHH--HHHHcCCceeeeeH
Confidence 69999999999998 44333334566654
No 332
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=79.19 E-value=3.3 Score=36.45 Aligned_cols=40 Identities=25% Similarity=0.181 Sum_probs=30.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKT 43 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~ 43 (348)
.|.||||+|.+++-+ .+..-...+|++--..+++..+..-
T Consensus 69 ~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~l 108 (279)
T COG0468 69 ESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQL 108 (279)
T ss_pred CCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHHH
Confidence 489999999998884 4444447899998888887765443
No 333
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=79.18 E-value=1 Score=38.18 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||+|+.+.+
T Consensus 21 ~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 21 PGTGKTSTIKYLPG 34 (220)
T ss_pred CCCCHHHHHHhcCC
Confidence 69999999999865
No 334
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=79.15 E-value=1.1 Score=39.84 Aligned_cols=15 Identities=33% Similarity=0.490 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
.+|.||||+|+.+.+
T Consensus 10 ~pGSGKSTla~~L~~ 24 (300)
T PHA02530 10 VPGSGKSTWAREFAA 24 (300)
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 335
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=79.10 E-value=1.2 Score=35.07 Aligned_cols=15 Identities=53% Similarity=0.822 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+.++.++
T Consensus 10 ~~vGKTsl~~~~~~~ 24 (162)
T cd04138 10 GGVGKSALTIQLIQN 24 (162)
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998764
No 336
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=79.03 E-value=1.2 Score=36.83 Aligned_cols=16 Identities=44% Similarity=0.532 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
+-|+||||+++.+.+.
T Consensus 7 ~~GsGKSTl~~~L~~~ 22 (193)
T cd01673 7 NIGAGKSTLAKELAEH 22 (193)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3599999999999883
No 337
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=78.98 E-value=1.4 Score=41.63 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=20.1
Q ss_pred CCCcHHHHHHHHhcchhhhcCCC--eeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFH--LETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~ 31 (348)
.|+|||+||+++++ .+....+ .++|++.
T Consensus 139 ~G~GKTHLl~ai~~--~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 139 VGLGKTHLLQSIGN--YVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCcHHHHHHHHHH--HHHHhCCCCeEEEEEH
Confidence 69999999999999 5544433 3456653
No 338
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=78.90 E-value=1.4 Score=35.35 Aligned_cols=16 Identities=38% Similarity=0.594 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
+|||||||...+....
T Consensus 44 SGvGKSSLiN~L~~~~ 59 (161)
T PF03193_consen 44 SGVGKSSLINALLPEA 59 (161)
T ss_dssp TTSSHHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHhhc
Confidence 6999999999999853
No 339
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.88 E-value=0.26 Score=42.77 Aligned_cols=62 Identities=26% Similarity=0.272 Sum_probs=50.0
Q ss_pred CCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCC
Q 043181 280 DLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESL 345 (348)
Q Consensus 280 ~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~l 345 (348)
.+.+.+.|+..++.++.+-- ..+++.|++|.|+- +.+..|-+ +..+++|+.|.|+-| .+.++
T Consensus 17 dl~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRkN-~I~sl 78 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRKN-CIESL 78 (388)
T ss_pred HHHHhhhhcccCCCccHHHH-HHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHhc-ccccH
Confidence 35677888999999887632 56889999999998 78988876 889999999999877 55544
No 340
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=78.88 E-value=1.2 Score=34.79 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
.|+|||||++.+.+...- ..+...+..+.
T Consensus 9 ~~sGKTTl~~~Li~~l~~-~g~~v~~ik~~ 37 (140)
T PF03205_consen 9 KNSGKTTLIRKLINELKR-RGYRVAVIKHT 37 (140)
T ss_dssp TTSSHHHHHHHHHHHHHH-TT--EEEEEE-
T ss_pred CCCCHHHHHHHHHHHHhH-cCCceEEEEEc
Confidence 589999999999994322 23333334443
No 341
>PRK09354 recA recombinase A; Provisional
Probab=78.87 E-value=2.4 Score=38.62 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDV 37 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 37 (348)
.|.||||||.++... .+..=...+|++.-..++.
T Consensus 69 ~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 69 ESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDP 102 (349)
T ss_pred CCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHH
Confidence 699999999998873 3333346789988777765
No 342
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=78.85 E-value=4.1 Score=35.66 Aligned_cols=44 Identities=25% Similarity=0.258 Sum_probs=28.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSI 48 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l 48 (348)
+|+||||++.++..+...... ..++|++.-. ...++.+.+...+
T Consensus 39 ~G~GKT~l~~~~~~~~~~~~g-~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 39 TGVGKTTFLREYALDLITQHG-VRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CCCCHHHHHHHHHHHHHHhcC-ceEEEEEccc--CHHHHHHHHHHHH
Confidence 699999999998774322211 3577877655 3455666655543
No 343
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=78.81 E-value=1.3 Score=35.30 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+..+.++
T Consensus 9 ~~vGKTsli~~~~~~ 23 (161)
T cd04124 9 SAVGKSKLVERFLMD 23 (161)
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999987653
No 344
>PF13245 AAA_19: Part of AAA domain
Probab=78.72 E-value=3.4 Score=28.43 Aligned_cols=14 Identities=50% Similarity=0.667 Sum_probs=9.9
Q ss_pred CCCcHH-HHHHHHhc
Q 043181 2 GGVGKT-TLAQLLCN 15 (348)
Q Consensus 2 gGiGKT-tLa~~v~~ 15 (348)
+|.||| |++..+..
T Consensus 19 pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 19 PGTGKTTTLAARIAE 33 (76)
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999 55555555
No 345
>PRK10536 hypothetical protein; Provisional
Probab=78.66 E-value=1.7 Score=37.60 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=16.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFH 24 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~ 24 (348)
+|.|||+||.++..+.-..+.|+
T Consensus 83 aGTGKT~La~a~a~~~l~~~~~~ 105 (262)
T PRK10536 83 AGCGKTWISAAKAAEALIHKDVD 105 (262)
T ss_pred CCCCHHHHHHHHHHHHHhcCCee
Confidence 69999999999887432334444
No 346
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=78.66 E-value=1.7 Score=41.12 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=18.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (348)
.|+|||+||+++.+ .+...-..+++++
T Consensus 150 ~G~GKTHLl~Ai~~--~l~~~~~~v~yi~ 176 (445)
T PRK12422 150 EGSGKTHLMQAAVH--ALRESGGKILYVR 176 (445)
T ss_pred CCCCHHHHHHHHHH--HHHHcCCCEEEee
Confidence 69999999999999 4433222345554
No 347
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=78.62 E-value=1.3 Score=35.10 Aligned_cols=15 Identities=33% Similarity=0.585 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+.++.+.
T Consensus 9 ~~vGKTsli~~l~~~ 23 (161)
T cd04113 9 SGTGKSCLLHRFVEN 23 (161)
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998764
No 348
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=78.59 E-value=1.3 Score=35.01 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+||||++..+...
T Consensus 8 ~GsGKTt~~~~l~~~ 22 (148)
T cd03114 8 PGAGKSTLIDALITA 22 (148)
T ss_pred CCCcHHHHHHHHHHH
Confidence 799999999999873
No 349
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=78.47 E-value=2.8 Score=37.64 Aligned_cols=46 Identities=20% Similarity=0.218 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHhcchhhh----cCCCeeEEEEcCCCCCHHHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCNNVKVK----NRFHLETWVYLFEDFDVFRITKTMLQSI 48 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~~~~~~~~~l~~~il~~l 48 (348)
.|+|||+|+.+++-+.... +.=..++|++.-..+++.++.+ +++.+
T Consensus 105 ~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~ 154 (313)
T TIGR02238 105 FRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERF 154 (313)
T ss_pred CCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHc
Confidence 6999999999876432222 1113578999988888887764 34444
No 350
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=78.40 E-value=3.5 Score=32.50 Aligned_cols=31 Identities=32% Similarity=0.219 Sum_probs=21.4
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFED 34 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 34 (348)
||+||||+|..++. .+...-..++.+++...
T Consensus 10 ~g~G~t~~a~~lA~--~la~~~~~Vllid~~~~ 40 (157)
T PF13614_consen 10 GGVGKTTLALNLAA--ALARKGKKVLLIDFDFF 40 (157)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTT-EEEEE--SS
T ss_pred CCCCHHHHHHHHHH--HHHhcCCCeEEEECCCC
Confidence 79999999999999 55444434777776554
No 351
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=78.34 E-value=1.2 Score=39.37 Aligned_cols=14 Identities=43% Similarity=0.503 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+.+..
T Consensus 71 ~GSGKSTlar~L~~ 84 (290)
T TIGR00554 71 VAVGKSTTARILQA 84 (290)
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999988766
No 352
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=78.33 E-value=1.3 Score=35.60 Aligned_cols=15 Identities=47% Similarity=0.674 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
..|.||||+|+.+.+
T Consensus 8 ~~GSGKstia~~la~ 22 (171)
T TIGR02173 8 PPGSGKTTVAKILAE 22 (171)
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 353
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=78.30 E-value=1.5 Score=41.06 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHhcchhhhcCCC--eeEEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFH--LETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~ 30 (348)
.|+|||+||+++++ ++....+ .+++++
T Consensus 145 ~G~GKThL~~ai~~--~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 145 VGLGKTHLLHAIGN--EILENNPNAKVVYVS 173 (405)
T ss_pred CCCcHHHHHHHHHH--HHHHhCCCCcEEEEE
Confidence 69999999999999 5544433 244554
No 354
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=78.18 E-value=1.6 Score=41.50 Aligned_cols=28 Identities=25% Similarity=0.256 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCe--eEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHL--ETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~--~~wv~~ 31 (348)
.|+|||+||+++.+ ++...++. +++++.
T Consensus 157 ~G~GKThL~~ai~~--~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 157 VGLGKTHLLHAIGN--YILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCCHHHHHHHHHH--HHHHhCCCCeEEEEEH
Confidence 69999999999999 56555433 445543
No 355
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=77.99 E-value=1.1 Score=38.35 Aligned_cols=19 Identities=37% Similarity=0.653 Sum_probs=15.8
Q ss_pred CCCcHHHHHHHHhcchhhh
Q 043181 2 GGVGKTTLAQLLCNNVKVK 20 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (348)
+||||||+|..++++.-+.
T Consensus 98 sGVGkStIA~ElA~rLgI~ 116 (299)
T COG2074 98 SGVGKSTIAGELARRLGIR 116 (299)
T ss_pred CCCChhHHHHHHHHHcCCc
Confidence 6999999999999955443
No 356
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.86 E-value=1.2 Score=40.97 Aligned_cols=15 Identities=60% Similarity=0.904 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+||||+|+.+.+.
T Consensus 47 ~G~GKTtla~~la~~ 61 (363)
T PRK14961 47 RGVGKTTIARLLAKS 61 (363)
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999999873
No 357
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=77.82 E-value=3.1 Score=41.13 Aligned_cols=49 Identities=18% Similarity=0.081 Sum_probs=29.5
Q ss_pred CCCCcHHHHHHHHhcchhhhcC-CCeeEEEEcCCCCCHHHHHHHHHHhccccc
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNR-FHLETWVYLFEDFDVFRITKTMLQSISTEA 52 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~-F~~~~wv~~~~~~~~~~l~~~il~~l~~~~ 52 (348)
..|+||||+|+++.+ .+-.. |...+++..+.. ....+++.++..++...
T Consensus 45 ~pG~GKT~la~~la~--~l~~~~~~~~~~~~n~~~-~~~~~~~~v~~~~g~~~ 94 (608)
T TIGR00764 45 EPGVGKSMLAKAMAE--LLPDEELEDILVYPNPED-PNMPRIVEVPAGEGREI 94 (608)
T ss_pred CCCCCHHHHHHHHHH--HcCchhheeEEEEeCCCC-CchHHHHHHHHhhchHH
Confidence 369999999999998 44332 333333333322 44555777776665543
No 358
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=77.79 E-value=1.5 Score=35.11 Aligned_cols=15 Identities=47% Similarity=0.694 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+.++.+.
T Consensus 9 ~~~GKSsl~~~l~~~ 23 (172)
T cd01862 9 SGVGKTSLMNQYVNK 23 (172)
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998874
No 359
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=77.76 E-value=4.4 Score=34.74 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKT 43 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~ 43 (348)
+|.||||||.++.... . ..=..++|++... +..++.+.
T Consensus 30 pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 30 PGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 6999999999865421 2 2234678888765 44455444
No 360
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=77.74 E-value=1.2 Score=35.48 Aligned_cols=16 Identities=44% Similarity=0.628 Sum_probs=14.3
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
+|.||||+|+.+.++.
T Consensus 9 pGsG~TTva~~lAe~~ 24 (179)
T COG1102 9 PGSGKTTVARELAEHL 24 (179)
T ss_pred CCCChhHHHHHHHHHh
Confidence 6999999999999844
No 361
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=77.73 E-value=3.1 Score=38.85 Aligned_cols=15 Identities=40% Similarity=0.426 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+||||+|..+...
T Consensus 232 tGvGKTTtaaKLA~~ 246 (432)
T PRK12724 232 TGSGKTTSIAKLAAK 246 (432)
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999873
No 362
>PRK08840 replicative DNA helicase; Provisional
Probab=77.61 E-value=3.5 Score=39.27 Aligned_cols=61 Identities=23% Similarity=0.269 Sum_probs=37.4
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhccccccCCCChhhhhcCCCChHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSISTEAVRDNDLNLLQLKKWSDDD 70 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~l~~~~l~~~~ 70 (348)
+|+||||+|..++.+...+... .++|. +-.....++...++........ ..+....+++++
T Consensus 226 Pg~GKTafalnia~~~a~~~~~-~v~~f--SlEMs~~ql~~Rlla~~s~v~~-----~~i~~~~l~~~e 286 (464)
T PRK08840 226 PSMGKTTFAMNLCENAAMDQDK-PVLIF--SLEMPAEQLMMRMLASLSRVDQ-----TKIRTGQLDDED 286 (464)
T ss_pred CCCchHHHHHHHHHHHHHhCCC-eEEEE--eccCCHHHHHHHHHHhhCCCCH-----HHHhcCCCCHHH
Confidence 6999999999888754433322 23333 4446778888888887664321 223333456555
No 363
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=77.59 E-value=1.7 Score=43.06 Aligned_cols=31 Identities=32% Similarity=0.263 Sum_probs=20.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCC---eeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFH---LETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~~~ 32 (348)
.|+||||+|+.+++.......++ ..-|+.+.
T Consensus 184 ~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 184 PGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred CCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 69999999999998554444332 23456553
No 364
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=77.54 E-value=4.1 Score=37.62 Aligned_cols=51 Identities=25% Similarity=0.236 Sum_probs=27.2
Q ss_pred CCCcHHH-HHHHHhcchhhhcCCCeeEEEEcCC-CCCHHHHHHHHHHhcccccc
Q 043181 2 GGVGKTT-LAQLLCNNVKVKNRFHLETWVYLFE-DFDVFRITKTMLQSISTEAV 53 (348)
Q Consensus 2 gGiGKTt-La~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~l~~~il~~l~~~~~ 53 (348)
.|||||| ||+..+.-.....+ ..+..|+..- ...-.+.++.-.+-++.+..
T Consensus 212 TGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~ 264 (407)
T COG1419 212 TGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLE 264 (407)
T ss_pred CCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceE
Confidence 5999998 77777663312222 3455665532 22334445555555554443
No 365
>PLN03025 replication factor C subunit; Provisional
Probab=77.50 E-value=2.9 Score=37.69 Aligned_cols=14 Identities=43% Similarity=0.472 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+++++
T Consensus 43 ~G~GKTtla~~la~ 56 (319)
T PLN03025 43 PGTGKTTSILALAH 56 (319)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999988
No 366
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=77.46 E-value=2.5 Score=34.14 Aligned_cols=15 Identities=53% Similarity=0.598 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|.||||+++.+..
T Consensus 8 ~~G~GKTt~~~~la~ 22 (173)
T cd03115 8 LQGVGKTTTAAKLAL 22 (173)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999988
No 367
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=77.43 E-value=1.4 Score=35.77 Aligned_cols=15 Identities=47% Similarity=0.572 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|.|||||++.+...
T Consensus 15 sgsGKTTLi~~li~~ 29 (173)
T PRK10751 15 SGTGKTTLLKKLIPA 29 (173)
T ss_pred CCChHHHHHHHHHHH
Confidence 699999999999983
No 368
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=77.39 E-value=2.7 Score=38.14 Aligned_cols=35 Identities=26% Similarity=0.163 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRIT 41 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~ 41 (348)
.|+|||+||+++.. .+.. ....+....+....++.
T Consensus 52 PG~gKT~la~~lA~--~l~~---~~~~i~~t~~l~p~d~~ 86 (329)
T COG0714 52 PGVGKTLLARALAR--ALGL---PFVRIQCTPDLLPSDLL 86 (329)
T ss_pred CCccHHHHHHHHHH--HhCC---CeEEEecCCCCCHHHhc
Confidence 69999999999998 4442 23445555555555544
No 369
>PRK15453 phosphoribulokinase; Provisional
Probab=77.38 E-value=1.3 Score=38.84 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||+|+++.+
T Consensus 14 SGsGKTTva~~l~~ 27 (290)
T PRK15453 14 SGAGTTTVKRAFEK 27 (290)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999986
No 370
>PRK14738 gmk guanylate kinase; Provisional
Probab=77.34 E-value=1.5 Score=36.84 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||++++.+
T Consensus 22 sG~GK~tl~~~L~~ 35 (206)
T PRK14738 22 SGVGKDAVLARMRE 35 (206)
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999976
No 371
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=77.33 E-value=3.4 Score=38.94 Aligned_cols=44 Identities=20% Similarity=0.229 Sum_probs=31.4
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCC-CHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDF-DVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~l~~~il~ 46 (348)
+|+|||+|+.++.++.. +.+-+.++|+.+++.. +..++.+++..
T Consensus 147 ~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~ 191 (449)
T TIGR03305 147 AGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKE 191 (449)
T ss_pred CCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhh
Confidence 59999999999888543 2334788899888765 45556666554
No 372
>PRK06526 transposase; Provisional
Probab=77.33 E-value=1.4 Score=38.34 Aligned_cols=15 Identities=47% Similarity=0.370 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||+||.++.+.
T Consensus 107 ~GtGKThLa~al~~~ 121 (254)
T PRK06526 107 PGTGKTHLAIGLGIR 121 (254)
T ss_pred CCCchHHHHHHHHHH
Confidence 699999999999884
No 373
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=77.23 E-value=18 Score=32.35 Aligned_cols=15 Identities=47% Similarity=0.532 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+||||+|+.+.+.
T Consensus 47 ~G~GKt~~~~~l~~~ 61 (319)
T PRK00440 47 PGTGKTTAALALARE 61 (319)
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999999883
No 374
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=77.21 E-value=5.4 Score=36.73 Aligned_cols=49 Identities=14% Similarity=0.058 Sum_probs=26.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCC-CCCHHHHHHHHHHhccc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFE-DFDVFRITKTMLQSIST 50 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~-~~~~~~l~~~il~~l~~ 50 (348)
.|+||||++..+......+.....+.+++... .....+.++...+.++.
T Consensus 146 tGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv 195 (374)
T PRK14722 146 TGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGV 195 (374)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCC
Confidence 59999999999988332221112345555322 22334445554544443
No 375
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=77.20 E-value=1.9 Score=35.27 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
+|+|||||++++.. ...+.|...+..+-
T Consensus 11 sg~GK~~l~~~L~~--~~~~~~~~~v~~TT 38 (183)
T PF00625_consen 11 SGSGKSTLAKRLIQ--EFPDKFGRVVSHTT 38 (183)
T ss_dssp TTSSHHHHHHHHHH--HSTTTEEEEEEEES
T ss_pred CCCCHHHHHHHHHH--hcccccccceeecc
Confidence 69999999999998 66666754444443
No 376
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=77.18 E-value=1.3 Score=41.21 Aligned_cols=14 Identities=43% Similarity=0.641 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||++|+++++
T Consensus 188 pGTGKT~LAkalA~ 201 (398)
T PTZ00454 188 PGTGKTMLAKAVAH 201 (398)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 377
>PRK12338 hypothetical protein; Provisional
Probab=77.16 E-value=1.3 Score=39.63 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||+|+++..
T Consensus 13 sGsGKST~a~~la~ 26 (319)
T PRK12338 13 SGIGKSTIASELAR 26 (319)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999988
No 378
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=77.05 E-value=0.064 Score=45.14 Aligned_cols=49 Identities=14% Similarity=0.077 Sum_probs=42.5
Q ss_pred eCCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchh
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKL 321 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~l 321 (348)
.+|..++++..++.+++.+|..+..|.+.+++++++.+++.+......+
T Consensus 79 ~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~~~~~ 127 (326)
T KOG0473|consen 79 FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEFFRKL 127 (326)
T ss_pred hChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcchHHH
Confidence 5789999999999999999999999999999999999999984433333
No 379
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=77.00 E-value=1.6 Score=33.76 Aligned_cols=15 Identities=53% Similarity=0.603 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 9 ~~vGKSsL~~~l~~~ 23 (142)
T TIGR02528 9 VGCGKTTLTQALQGE 23 (142)
T ss_pred CCCCHHHHHHHHcCC
Confidence 699999999998874
No 380
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=76.99 E-value=1.3 Score=38.75 Aligned_cols=20 Identities=40% Similarity=0.615 Sum_probs=16.4
Q ss_pred CCCcHHHHHHHHhcchhhhcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF 23 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F 23 (348)
.|.|||-||++|+| +.+..|
T Consensus 228 PGTGKTLLAKAVAN--qTSATF 247 (440)
T KOG0726|consen 228 PGTGKTLLAKAVAN--QTSATF 247 (440)
T ss_pred CCCchhHHHHHHhc--ccchhh
Confidence 69999999999999 555444
No 381
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=76.98 E-value=1.4 Score=39.93 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
+.|.||||+++.+.+.
T Consensus 7 l~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 7 LPAAGKSTLARSLSAT 22 (340)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999999983
No 382
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.96 E-value=1.2 Score=42.76 Aligned_cols=40 Identities=5% Similarity=0.031 Sum_probs=26.4
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchh
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLA 108 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLa 108 (348)
+++.++....+.+.+-..+.. .. .+....|++.++|.+--
T Consensus 174 ~ls~~el~~~L~~i~~~egi~-i~---~~Al~~ia~~s~GdlR~ 213 (504)
T PRK14963 174 RLTEEEIAGKLRRLLEAEGRE-AE---PEALQLVARLADGAMRD 213 (504)
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCCHHH
Confidence 788888888888766433321 11 25677788888887743
No 383
>PRK06904 replicative DNA helicase; Validated
Probab=76.87 E-value=4.1 Score=38.91 Aligned_cols=46 Identities=28% Similarity=0.300 Sum_probs=31.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhccc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSIST 50 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~~ 50 (348)
+|+||||+|..++.+...+... .++| ++-..+..++..+++.....
T Consensus 230 Pg~GKTafalnia~~~a~~~g~-~Vl~--fSlEMs~~ql~~Rlla~~s~ 275 (472)
T PRK06904 230 PSMGKTTFAMNLCENAAMASEK-PVLV--FSLEMPAEQIMMRMLASLSR 275 (472)
T ss_pred CCCChHHHHHHHHHHHHHhcCC-eEEE--EeccCCHHHHHHHHHHhhCC
Confidence 6999999999888754333222 2334 35557788888888887654
No 384
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=76.81 E-value=1.8 Score=32.24 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
+.|+|||||..++.+.
T Consensus 7 ~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 7 RPNVGKSTLINALTGK 22 (116)
T ss_dssp STTSSHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHhcc
Confidence 3699999999999973
No 385
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=76.72 E-value=1.7 Score=33.51 Aligned_cols=26 Identities=23% Similarity=0.215 Sum_probs=18.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (348)
.|.|||||.+.+... ... ..+.+++.
T Consensus 20 nGsGKStLl~~l~g~--~~~-~~G~i~~~ 45 (137)
T PF00005_consen 20 NGSGKSTLLKALAGL--LPP-DSGSILIN 45 (137)
T ss_dssp TTSSHHHHHHHHTTS--SHE-SEEEEEET
T ss_pred CCCccccceeeeccc--ccc-cccccccc
Confidence 599999999999983 322 34566554
No 386
>PRK14737 gmk guanylate kinase; Provisional
Probab=76.70 E-value=1.6 Score=36.02 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||++++..
T Consensus 13 sG~GK~tl~~~l~~ 26 (186)
T PRK14737 13 AGGGKSTIIQALLE 26 (186)
T ss_pred CCCCHHHHHHHHHh
Confidence 79999999999987
No 387
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=76.68 E-value=5.4 Score=34.04 Aligned_cols=38 Identities=18% Similarity=0.090 Sum_probs=24.4
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKT 43 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~ 43 (348)
.|+||||||.++.... ++. =..++|++..+. ...+.++
T Consensus 34 ~GsGKt~l~~~~~~~~-~~~-g~~~~y~~~e~~--~~~~~~~ 71 (234)
T PRK06067 34 HGTGKSVLSQQFVYGA-LKQ-GKKVYVITTENT--SKSYLKQ 71 (234)
T ss_pred CCCChHHHHHHHHHHH-HhC-CCEEEEEEcCCC--HHHHHHH
Confidence 6999999999985422 222 236778888654 3444444
No 388
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=76.62 E-value=4.2 Score=34.51 Aligned_cols=32 Identities=31% Similarity=0.178 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHHhcchhhh-cCCCeeEEEEcCCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVK-NRFHLETWVYLFEDF 35 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~~~~~ 35 (348)
+|.|||+||.++..+...+ + ..++|++..++.
T Consensus 28 ~GsGKT~l~~q~l~~~~~~~g--e~vlyvs~ee~~ 60 (226)
T PF06745_consen 28 PGSGKTTLALQFLYNGLKNFG--EKVLYVSFEEPP 60 (226)
T ss_dssp TTSSHHHHHHHHHHHHHHHHT----EEEEESSS-H
T ss_pred CCCCcHHHHHHHHHHhhhhcC--CcEEEEEecCCH
Confidence 6999999999865432222 2 257788876643
No 389
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=76.57 E-value=1.3 Score=39.40 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=21.8
Q ss_pred CCCCcHHHHHHHHhcchhh--hcCCCeeEEEEc
Q 043181 1 MGGVGKTTLAQLLCNNVKV--KNRFHLETWVYL 31 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~--~~~F~~~~wv~~ 31 (348)
.+|.|||+|.+++++...+ .+.+.....+.+
T Consensus 185 PPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi 217 (423)
T KOG0744|consen 185 PPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI 217 (423)
T ss_pred CCCCChhHHHHHHHHhheeeecCccccceEEEE
Confidence 3799999999999997644 444544444443
No 390
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=76.56 E-value=1.7 Score=35.63 Aligned_cols=15 Identities=40% Similarity=0.603 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|.||||+|+.+...
T Consensus 27 ~GsGKstla~~l~~~ 41 (184)
T TIGR00455 27 SGSGKSTIANALEKK 41 (184)
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999999983
No 391
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=76.53 E-value=1.6 Score=34.49 Aligned_cols=15 Identities=40% Similarity=0.736 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+.++.++
T Consensus 10 ~~vGKTsl~~~~~~~ 24 (163)
T cd04136 10 GGVGKSALTVQFVQG 24 (163)
T ss_pred CCCCHHHHHHHHHhC
Confidence 599999999987753
No 392
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=76.53 E-value=2.4 Score=37.26 Aligned_cols=26 Identities=31% Similarity=0.272 Sum_probs=18.4
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (348)
+|.|||||+..+.. ..+..- .++-+.
T Consensus 10 ~gSGKTTLi~~Li~--~L~~~G-~V~~IK 35 (274)
T PRK14493 10 KATGKTTLVERLVD--RLSGRG-RVGTVK 35 (274)
T ss_pred CCCCHHHHHHHHHH--HHHhCC-CEEEEE
Confidence 59999999999998 554443 244443
No 393
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=76.49 E-value=2.7 Score=36.99 Aligned_cols=16 Identities=50% Similarity=0.657 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
.+|+||||.+..++..
T Consensus 80 ~~G~GKTTt~akLA~~ 95 (272)
T TIGR00064 80 VNGVGKTTTIAKLANK 95 (272)
T ss_pred CCCCcHHHHHHHHHHH
Confidence 3799999999998873
No 394
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=76.43 E-value=2.8 Score=40.69 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
.|.|||.||+++++..
T Consensus 232 PGCGKT~lA~AiAgel 247 (802)
T KOG0733|consen 232 PGCGKTSLANAIAGEL 247 (802)
T ss_pred CCccHHHHHHHHhhhc
Confidence 6999999999999963
No 395
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=76.42 E-value=1.6 Score=34.62 Aligned_cols=15 Identities=53% Similarity=0.733 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||++.+.+.
T Consensus 8 ~~vGKtsl~~~~~~~ 22 (162)
T PF00071_consen 8 SGVGKTSLINRLING 22 (162)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhh
Confidence 699999999998875
No 396
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=76.28 E-value=1.6 Score=37.50 Aligned_cols=14 Identities=43% Similarity=0.795 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
||+||||.|..+..
T Consensus 12 GGvGKSt~a~~la~ 25 (241)
T PRK13886 12 GGVGKSFIAATIAQ 25 (241)
T ss_pred CCCcHHHHHHHHHH
Confidence 89999999999887
No 397
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=76.27 E-value=1.8 Score=33.55 Aligned_cols=17 Identities=41% Similarity=0.380 Sum_probs=14.5
Q ss_pred CCCCcHHHHHHHHhcch
Q 043181 1 MGGVGKTTLAQLLCNNV 17 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (348)
..|+|||||+.++....
T Consensus 9 ~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 9 DPNVGKSTLLNRLLGNK 25 (161)
T ss_pred CCCCCHHHHHHHHhCCC
Confidence 36999999999998754
No 398
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=76.22 E-value=5.6 Score=33.97 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=22.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTM 44 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i 44 (348)
.|.||||+|.++.... .+.. ..+++++... ....+.+.+
T Consensus 33 ~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 33 ESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 6999999986655422 2222 3456666433 445555554
No 399
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=76.21 E-value=3.8 Score=38.77 Aligned_cols=45 Identities=29% Similarity=0.287 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCC-CHHHHHHHHHHh
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDF-DVFRITKTMLQS 47 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~l~~~il~~ 47 (348)
+|+|||||+..+..+...... +.++++.+++.. ++.++.++++..
T Consensus 153 ~GvGKt~Ll~~i~~~~~~~~~-~v~V~~liGER~rEv~efi~~~~~~ 198 (463)
T PRK09280 153 AGVGKTVLIQELINNIAKEHG-GYSVFAGVGERTREGNDLYHEMKES 198 (463)
T ss_pred CCCChhHHHHHHHHHHHhcCC-CEEEEEEeccCcHHHHHHHHHHHhc
Confidence 599999999998775433221 457777787654 466666666653
No 400
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=76.16 E-value=1.6 Score=34.40 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||+|.++.+
T Consensus 23 sG~GKStlal~L~~ 36 (149)
T cd01918 23 SGIGKSELALELIK 36 (149)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999998776
No 401
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=76.07 E-value=1.6 Score=37.91 Aligned_cols=14 Identities=43% Similarity=0.774 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||+++.+..
T Consensus 48 SG~GKSTlgr~i~~ 61 (268)
T COG4608 48 SGCGKSTLGRLILG 61 (268)
T ss_pred CCCCHHHHHHHHHc
Confidence 69999999999998
No 402
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=76.03 E-value=1.7 Score=34.34 Aligned_cols=15 Identities=33% Similarity=0.625 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||++++.+.
T Consensus 9 ~~~GKTtli~~l~~~ 23 (164)
T smart00175 9 SGVGKSSLLSRFTDG 23 (164)
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999864
No 403
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=76.00 E-value=1.7 Score=36.33 Aligned_cols=15 Identities=40% Similarity=0.696 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|||||||++++.++
T Consensus 9 ~gVGKTSli~r~~~~ 23 (202)
T cd04120 9 RGVGKTSLMRRFTDD 23 (202)
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998763
No 404
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=75.97 E-value=1.7 Score=34.85 Aligned_cols=15 Identities=33% Similarity=0.516 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||.+.+.+.
T Consensus 23 ~g~GKStLl~~l~~~ 37 (173)
T cd04155 23 DNAGKTTILKQLASE 37 (173)
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999884
No 405
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=75.96 E-value=3.3 Score=37.26 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=26.3
Q ss_pred CCCcHHHHHHHHhcchhhh---c-CCCeeEEEEcCCCCCHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVK---N-RFHLETWVYLFEDFDVFRI 40 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~~~~~~~~~l 40 (348)
.|.||||||.+++.+.... + .-..++|++.-..++..++
T Consensus 105 ~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl 147 (316)
T TIGR02239 105 FRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL 147 (316)
T ss_pred CCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH
Confidence 5999999999987633221 1 1124689988777777653
No 406
>PHA03134 thymidine kinase; Provisional
Probab=75.93 E-value=1.5 Score=39.37 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=11.6
Q ss_pred CCcHHHHHHHHhc
Q 043181 3 GVGKTTLAQLLCN 15 (348)
Q Consensus 3 GiGKTtLa~~v~~ 15 (348)
||||||+++.+..
T Consensus 23 GvGKTT~~~~l~~ 35 (340)
T PHA03134 23 GIGKSTTGRVMAS 35 (340)
T ss_pred cCCHHHHHHHHHH
Confidence 9999999988875
No 407
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=75.90 E-value=1.8 Score=33.15 Aligned_cols=16 Identities=44% Similarity=0.561 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
.|+|||||+.++....
T Consensus 5 ~~~GKStl~~~l~~~~ 20 (157)
T cd00882 5 SGVGKTSLLNRLLGGE 20 (157)
T ss_pred CCCcHHHHHHHHHhCC
Confidence 6999999999998754
No 408
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=75.81 E-value=2.4 Score=40.72 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|.|||++|+++++.
T Consensus 225 PGTGKT~LAKAlA~e 239 (512)
T TIGR03689 225 PGCGKTLIAKAVANS 239 (512)
T ss_pred CCCcHHHHHHHHHHh
Confidence 699999999999993
No 409
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=75.79 E-value=2.9 Score=38.53 Aligned_cols=30 Identities=27% Similarity=0.221 Sum_probs=21.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFE 33 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 33 (348)
+|+|||||+.++... ....-..++|++.-+
T Consensus 91 pG~GKStLllq~a~~--~a~~g~~VlYvs~EE 120 (372)
T cd01121 91 PGIGKSTLLLQVAAR--LAKRGGKVLYVSGEE 120 (372)
T ss_pred CCCCHHHHHHHHHHH--HHhcCCeEEEEECCc
Confidence 699999999999873 333324567776544
No 410
>COG0645 Predicted kinase [General function prediction only]
Probab=75.76 E-value=1.7 Score=34.85 Aligned_cols=14 Identities=50% Similarity=0.636 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.||||+|+.+..
T Consensus 10 ~GsGKstlA~~l~~ 23 (170)
T COG0645 10 PGSGKSTLARGLAE 23 (170)
T ss_pred CCccHhHHHHHHHh
Confidence 69999999999988
No 411
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=75.74 E-value=1.7 Score=34.26 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|.||||+|+.+...
T Consensus 5 PgsGK~t~~~~la~~ 19 (151)
T PF00406_consen 5 PGSGKGTQAKRLAKR 19 (151)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHh
Confidence 699999999999983
No 412
>PLN02348 phosphoribulokinase
Probab=75.56 E-value=1.6 Score=40.30 Aligned_cols=14 Identities=36% Similarity=0.615 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||+|+.+.+
T Consensus 58 SGSGKSTfA~~L~~ 71 (395)
T PLN02348 58 SGCGKSTFMRRLTS 71 (395)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 413
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=75.54 E-value=4.3 Score=36.51 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVF 38 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 38 (348)
.|+||||||.++.. +.+..-..++|++....+|..
T Consensus 62 ~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~ 96 (322)
T PF00154_consen 62 ESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPE 96 (322)
T ss_dssp TTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HH
T ss_pred CCCchhhhHHHHHH--hhhcccceeEEecCcccchhh
Confidence 47899999999988 444444568899887776653
No 414
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=75.51 E-value=1.7 Score=35.13 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+..+.+.
T Consensus 10 ~g~GKTtl~~~~~~~ 24 (180)
T cd04137 10 RSVGKSSLTVQFVEG 24 (180)
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998763
No 415
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=75.43 E-value=1.6 Score=38.35 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||+++.+..
T Consensus 8 sGsGKSTl~~~L~~ 21 (273)
T cd02026 8 SGCGKSTFLRRLTS 21 (273)
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999987
No 416
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=75.41 E-value=4.3 Score=33.31 Aligned_cols=33 Identities=30% Similarity=0.349 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCC--------CeeEEEEcCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF--------HLETWVYLFED 34 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F--------~~~~wv~~~~~ 34 (348)
+|+||||++.++.-.......| ..++|++.-.+
T Consensus 41 ~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 41 PGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp STSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred CCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 7999999999988744332222 14566665554
No 417
>PRK14527 adenylate kinase; Provisional
Probab=75.39 E-value=1.7 Score=35.84 Aligned_cols=15 Identities=40% Similarity=0.505 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|.||||+|+.+.+.
T Consensus 15 pGsGKsT~a~~La~~ 29 (191)
T PRK14527 15 PGAGKGTQAERLAQE 29 (191)
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999873
No 418
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=75.36 E-value=1.8 Score=34.46 Aligned_cols=14 Identities=36% Similarity=0.442 Sum_probs=12.4
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||+.++..
T Consensus 12 ~~~GKTsli~~l~~ 25 (165)
T cd01864 12 SNVGKTCVVQRFKS 25 (165)
T ss_pred CCCCHHHHHHHHhh
Confidence 69999999999865
No 419
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=75.30 E-value=3.3 Score=35.18 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=20.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFED 34 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 34 (348)
+|.||||||.++.... .+ .=...+|++....
T Consensus 29 ~G~GKT~l~~~~~~~~-~~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 29 PGTGKTIFCLHFAYKG-LR-DGDPVIYVTTEES 59 (229)
T ss_pred CCCChHHHHHHHHHHH-Hh-cCCeEEEEEccCC
Confidence 5999999999876522 22 2346778877443
No 420
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=75.23 E-value=1.8 Score=36.53 Aligned_cols=25 Identities=32% Similarity=0.308 Sum_probs=17.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||++.+..-.. -..+.+++
T Consensus 39 nGsGKSTLl~~i~Gl~~---~~~G~i~~ 63 (218)
T cd03255 39 SGSGKSTLLNILGGLDR---PTSGEVRV 63 (218)
T ss_pred CCCCHHHHHHHHhCCcC---CCceeEEE
Confidence 59999999999998322 22455554
No 421
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=75.23 E-value=2.7 Score=33.66 Aligned_cols=25 Identities=32% Similarity=0.325 Sum_probs=18.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETW 28 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~w 28 (348)
+|+||||+|..++. ..+.....+.+
T Consensus 7 ~~~GKT~va~~L~~--~l~~~g~~V~~ 31 (166)
T TIGR00347 7 TGVGKTVASSALAA--KLKKAGYSVGY 31 (166)
T ss_pred CCccHHHHHHHHHH--HHHHCCCcEEE
Confidence 69999999999999 55444333333
No 422
>PRK08006 replicative DNA helicase; Provisional
Probab=75.14 E-value=4.6 Score=38.55 Aligned_cols=46 Identities=28% Similarity=0.249 Sum_probs=30.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhccc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSIST 50 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~~ 50 (348)
+|+||||+|..+..+...+... .++++ +-.....++..+++.....
T Consensus 233 PgmGKTafalnia~~~a~~~g~-~V~~f--SlEM~~~ql~~Rlla~~~~ 278 (471)
T PRK08006 233 PSMGKTTFAMNLCENAAMLQDK-PVLIF--SLEMPGEQIMMRMLASLSR 278 (471)
T ss_pred CCCCHHHHHHHHHHHHHHhcCC-eEEEE--eccCCHHHHHHHHHHHhcC
Confidence 6999999999998754333222 23333 5556778888888877654
No 423
>PRK04195 replication factor C large subunit; Provisional
Probab=75.14 E-value=1.6 Score=41.96 Aligned_cols=15 Identities=60% Similarity=0.868 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+||||+|+++++.
T Consensus 48 pG~GKTtla~ala~e 62 (482)
T PRK04195 48 PGVGKTSLAHALAND 62 (482)
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999883
No 424
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=75.11 E-value=11 Score=35.14 Aligned_cols=26 Identities=31% Similarity=0.213 Sum_probs=19.4
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||-|++++.| ....+.+....+
T Consensus 122 ~GlGKTHLl~Aign--~~~~~~~~a~v~ 147 (408)
T COG0593 122 VGLGKTHLLQAIGN--EALANGPNARVV 147 (408)
T ss_pred CCCCHHHHHHHHHH--HHHhhCCCceEE
Confidence 49999999999999 666666533333
No 425
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=75.05 E-value=1.8 Score=36.26 Aligned_cols=15 Identities=47% Similarity=0.616 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|.|||||++.+...
T Consensus 36 nGsGKSTLl~~l~G~ 50 (211)
T cd03225 36 NGSGKSTLLRLLNGL 50 (211)
T ss_pred CCCCHHHHHHHHhcC
Confidence 599999999999983
No 426
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=74.86 E-value=2.9 Score=41.38 Aligned_cols=49 Identities=16% Similarity=0.024 Sum_probs=34.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhccccc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSISTEA 52 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~~~~ 52 (348)
.|+||||+|+++.+.. -...|+..+|...+. -+...+++.++...+.+.
T Consensus 59 ~G~GKttla~~l~~~l-~~~~~~~~~~~~np~-~~~~~~~~~v~~~~G~~~ 107 (637)
T PRK13765 59 PGTGKSMLAKAMAELL-PKEELQDILVYPNPE-DPNNPKIRTVPAGKGKQI 107 (637)
T ss_pred CCCcHHHHHHHHHHHc-ChHhHHHheEeeCCC-cchHHHHHHHHHhcCHHH
Confidence 6999999999998842 123356777876633 367778888887776654
No 427
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.81 E-value=2.3 Score=22.22 Aligned_cols=15 Identities=33% Similarity=0.693 Sum_probs=9.2
Q ss_pred CCCCEeeccCCCccc
Q 043181 305 HNLETLKLQNCNRLQ 319 (348)
Q Consensus 305 ~~L~~L~l~~c~~l~ 319 (348)
++|+.|+|++|..+.
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 456666666665554
No 428
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=74.81 E-value=5 Score=36.50 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=28.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCC-CHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDF-DVFRITKTML 45 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~l~~~il 45 (348)
.|+|||+|++++.+.. .-+.++++.+++.. ++.++++++-
T Consensus 166 ~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 166 FGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred CCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 5999999999999942 33578888887764 4555555543
No 429
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=74.80 E-value=1.9 Score=35.13 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||++.+..
T Consensus 35 nGsGKSTLl~~l~G 48 (178)
T cd03229 35 SGSGKSTLLRCIAG 48 (178)
T ss_pred CCCCHHHHHHHHhC
Confidence 59999999999987
No 430
>PRK08760 replicative DNA helicase; Provisional
Probab=74.80 E-value=5 Score=38.43 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=29.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSIS 49 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~ 49 (348)
+|+||||+|..+..+...+.... ++++ +-.....++...++....
T Consensus 238 Pg~GKTafal~iA~~~a~~~g~~-V~~f--SlEMs~~ql~~Rl~a~~s 282 (476)
T PRK08760 238 PAMGKTTFALNIAEYAAIKSKKG-VAVF--SMEMSASQLAMRLISSNG 282 (476)
T ss_pred CCCChhHHHHHHHHHHHHhcCCc-eEEE--eccCCHHHHHHHHHHhhC
Confidence 69999999999987544443332 3333 444566677777776654
No 431
>PRK02496 adk adenylate kinase; Provisional
Probab=74.76 E-value=1.8 Score=35.38 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
..|.||||+|+.+..
T Consensus 9 ~pGsGKst~a~~la~ 23 (184)
T PRK02496 9 PPGAGKGTQAVVLAE 23 (184)
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 432
>PRK05439 pantothenate kinase; Provisional
Probab=74.73 E-value=1.8 Score=38.76 Aligned_cols=14 Identities=50% Similarity=0.532 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||+|+.+..
T Consensus 95 ~gsGKSTla~~L~~ 108 (311)
T PRK05439 95 VAVGKSTTARLLQA 108 (311)
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999987
No 433
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=74.71 E-value=2 Score=33.37 Aligned_cols=16 Identities=38% Similarity=0.544 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
.|+|||||..++.+..
T Consensus 9 ~~~GKStl~~~l~~~~ 24 (159)
T cd00154 9 SGVGKTSLLLRFVDGK 24 (159)
T ss_pred CCCCHHHHHHHHHhCc
Confidence 6999999999998753
No 434
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=74.66 E-value=2 Score=34.00 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
+|+|||||+.++.++.
T Consensus 10 ~~~GKSsli~~l~~~~ 25 (163)
T cd01860 10 SSVGKSSLVLRFVKNE 25 (163)
T ss_pred CCCCHHHHHHHHHcCC
Confidence 6999999999998753
No 435
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=74.61 E-value=1.7 Score=39.39 Aligned_cols=14 Identities=36% Similarity=0.499 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+++.+
T Consensus 45 ~GtGKT~la~~~~~ 58 (337)
T PRK12402 45 PGSGKTAAVRALAR 58 (337)
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999988
No 436
>PRK05636 replicative DNA helicase; Provisional
Probab=74.56 E-value=4.4 Score=39.04 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=30.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhccc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSIST 50 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~~ 50 (348)
+|+||||+|..+..+..++.... +++ ++-.....++...++.....
T Consensus 274 pg~GKT~~al~~a~~~a~~~g~~-v~~--fSlEMs~~ql~~R~ls~~s~ 319 (505)
T PRK05636 274 PGVGKSTLALDFMRSASIKHNKA-SVI--FSLEMSKSEIVMRLLSAEAE 319 (505)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCe-EEE--EEeeCCHHHHHHHHHHHhcC
Confidence 69999999999887554443332 222 35555677788887776654
No 437
>PLN02200 adenylate kinase family protein
Probab=74.44 E-value=1.9 Score=37.05 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 51 ~PGSGKsT~a~~La~ 65 (234)
T PLN02200 51 GPGSGKGTQCEKIVE 65 (234)
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999977
No 438
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=74.38 E-value=2 Score=34.23 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 9 ~~~GKSsli~~l~~~ 23 (171)
T cd00157 9 GAVGKTCLLISYTTG 23 (171)
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999874
No 439
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=74.35 E-value=2 Score=33.54 Aligned_cols=15 Identities=40% Similarity=0.454 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++...
T Consensus 6 ~~~GKssl~~~l~~~ 20 (157)
T cd01894 6 PNVGKSTLFNRLTGR 20 (157)
T ss_pred CCCCHHHHHHHHhCC
Confidence 599999999999874
No 440
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=74.28 E-value=2.1 Score=33.95 Aligned_cols=14 Identities=36% Similarity=0.581 Sum_probs=12.4
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||+..+.+
T Consensus 9 ~~~GKtsl~~~l~~ 22 (164)
T cd04101 9 PAVGKTAFVQMFHS 22 (164)
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999998865
No 441
>PF13479 AAA_24: AAA domain
Probab=74.20 E-value=1.6 Score=36.86 Aligned_cols=12 Identities=67% Similarity=0.747 Sum_probs=11.1
Q ss_pred CCCcHHHHHHHH
Q 043181 2 GGVGKTTLAQLL 13 (348)
Q Consensus 2 gGiGKTtLa~~v 13 (348)
+|+||||+|..+
T Consensus 12 ~G~GKTt~a~~~ 23 (213)
T PF13479_consen 12 PGSGKTTLAASL 23 (213)
T ss_pred CCCCHHHHHHhC
Confidence 699999999988
No 442
>PTZ00369 Ras-like protein; Provisional
Probab=74.18 E-value=2 Score=35.22 Aligned_cols=15 Identities=47% Similarity=0.778 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+..+.++
T Consensus 14 ~~~GKTsLi~~~~~~ 28 (189)
T PTZ00369 14 GGVGKSALTIQFIQN 28 (189)
T ss_pred CCCCHHHHHHHHhcC
Confidence 599999999988764
No 443
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=74.13 E-value=2.1 Score=34.99 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.++
T Consensus 28 ~~~GKStLi~~l~~~ 42 (190)
T cd00879 28 DNAGKTTLLHMLKDD 42 (190)
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999873
No 444
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=74.02 E-value=1.8 Score=38.91 Aligned_cols=14 Identities=64% Similarity=1.037 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+++++
T Consensus 52 ~G~GKT~la~~l~~ 65 (316)
T PHA02544 52 PGTGKTTVAKALCN 65 (316)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 445
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=73.98 E-value=2 Score=33.91 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=14.8
Q ss_pred CCCcHHHHHHHHhcchhhh
Q 043181 2 GGVGKTTLAQLLCNNVKVK 20 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~ 20 (348)
+|.||||+++++-. +..
T Consensus 21 sGsGKSTigk~L~~--~l~ 37 (191)
T KOG3354|consen 21 SGSGKSTIGKALSE--ELG 37 (191)
T ss_pred CCCChhhHHHHHHH--HhC
Confidence 69999999999998 554
No 446
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=73.94 E-value=1.9 Score=36.42 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+|||+|++++.+
T Consensus 29 rg~GKTsLl~~~~~ 42 (234)
T PF01637_consen 29 RGSGKTSLLKEFIN 42 (234)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHH
Confidence 69999999999999
No 447
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=73.91 E-value=2.1 Score=34.33 Aligned_cols=15 Identities=40% Similarity=0.477 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||++++.+.
T Consensus 8 ~~~GKTsl~~~l~~~ 22 (167)
T cd04161 8 DNAGKTTLVSALQGE 22 (167)
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999998763
No 448
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=73.90 E-value=2.1 Score=33.66 Aligned_cols=15 Identities=47% Similarity=0.618 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 9 ~~~GKStli~~l~~~ 23 (162)
T cd04123 9 GRVGKTSLVLRYVEN 23 (162)
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998874
No 449
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=73.89 E-value=1.9 Score=38.28 Aligned_cols=14 Identities=43% Similarity=0.627 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||+|..+++
T Consensus 101 sgsGKStlA~~La~ 114 (301)
T PRK04220 101 SGVGTSTIAFELAS 114 (301)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 450
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=73.87 E-value=2.1 Score=34.45 Aligned_cols=15 Identities=40% Similarity=0.654 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||.+++.++
T Consensus 9 ~~vGKTsli~~~~~~ 23 (170)
T cd04108 9 LSVGKTCLINRFCKD 23 (170)
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999874
No 451
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=73.86 E-value=1.9 Score=37.69 Aligned_cols=27 Identities=30% Similarity=0.286 Sum_probs=17.1
Q ss_pred CCCcHHHHHHHH-hcchhhhcCCCeeEEEE
Q 043181 2 GGVGKTTLAQLL-CNNVKVKNRFHLETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v-~~~~~~~~~F~~~~wv~ 30 (348)
||+||||++..+ .- -.+...+.++-++
T Consensus 12 GGvGKTtitanlga~--~~~~~~k~V~~iD 39 (262)
T COG0455 12 GGVGKTTITANLGAA--LAALGGKVVLLID 39 (262)
T ss_pred CCccHHHHHHhHHHH--HHhhCCCeEEEEe
Confidence 899999999888 33 2333334444443
No 452
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=73.84 E-value=3.3 Score=36.13 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=20.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFE 33 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 33 (348)
+|.||||+|.++..+.. + .=..+++++.-.
T Consensus 45 pGtGKT~l~~qf~~~~a-~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 45 SDTGKSLMVEQFAVTQA-S-RGNPVLFVTVES 74 (259)
T ss_pred CCCCHHHHHHHHHHHHH-h-CCCcEEEEEecC
Confidence 69999999999755322 2 223577887754
No 453
>PRK13974 thymidylate kinase; Provisional
Probab=73.82 E-value=6.3 Score=33.12 Aligned_cols=45 Identities=16% Similarity=0.001 Sum_probs=25.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCC---eeEEEEcCCCCCHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFH---LETWVYLFEDFDVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~---~~~wv~~~~~~~~~~l~~~il~ 46 (348)
-|.||||+++.++......+..- .++...........+..++++.
T Consensus 12 dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~ 59 (212)
T PRK13974 12 DGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLL 59 (212)
T ss_pred CCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHc
Confidence 59999999999998554333221 1222223333345556666554
No 454
>PHA03135 thymidine kinase; Provisional
Probab=73.80 E-value=1.8 Score=38.87 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=11.8
Q ss_pred CCcHHHHHHHHhc
Q 043181 3 GVGKTTLAQLLCN 15 (348)
Q Consensus 3 GiGKTtLa~~v~~ 15 (348)
||||||+++++..
T Consensus 20 GvGKTT~~~~l~~ 32 (343)
T PHA03135 20 GIGKTSMLNEMPD 32 (343)
T ss_pred CCCHHHHHHHHHH
Confidence 9999999988876
No 455
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=73.78 E-value=2.1 Score=34.22 Aligned_cols=15 Identities=40% Similarity=0.632 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||...+.+.
T Consensus 8 ~~vGKTsli~~~~~~ 22 (164)
T cd04162 8 DGAGKTSLLHSLSSE 22 (164)
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999874
No 456
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=73.70 E-value=2 Score=36.13 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=18.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (348)
.|.|||||++.+..-. . -..+.+++.
T Consensus 38 nGsGKSTLl~~l~Gl~--~-~~~G~i~~~ 63 (216)
T TIGR00960 38 SGAGKSTFLKLILGIE--K-PTRGKIRFN 63 (216)
T ss_pred CCCCHHHHHHHHhCCC--C-CCceEEEEC
Confidence 5999999999999832 1 234556553
No 457
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=73.66 E-value=11 Score=33.50 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|.||+.||++|+..
T Consensus 175 PGTGKSYLAKAVATE 189 (439)
T KOG0739|consen 175 PGTGKSYLAKAVATE 189 (439)
T ss_pred CCCcHHHHHHHHHhh
Confidence 699999999999984
No 458
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=73.64 E-value=3.4 Score=38.14 Aligned_cols=20 Identities=45% Similarity=0.738 Sum_probs=16.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF 23 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F 23 (348)
.|.|||||+..+.. +.+..+
T Consensus 14 ~gsGKTTl~~~l~~--~l~~~~ 33 (369)
T PRK14490 14 SGSGKTTLITALVR--RLSERF 33 (369)
T ss_pred CCCCHHHHHHHHHH--HHhhCc
Confidence 69999999999998 555553
No 459
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=73.57 E-value=2.2 Score=33.56 Aligned_cols=16 Identities=38% Similarity=0.337 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
+|+|||||..++.+..
T Consensus 8 ~~~GKssli~~~~~~~ 23 (158)
T cd00878 8 DGAGKTTILYKLKLGE 23 (158)
T ss_pred CCCCHHHHHHHHhcCC
Confidence 6999999999998853
No 460
>PRK14531 adenylate kinase; Provisional
Probab=73.55 E-value=2 Score=35.14 Aligned_cols=15 Identities=47% Similarity=0.612 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
..|.||||+|+.+..
T Consensus 10 ~pGsGKsT~~~~la~ 24 (183)
T PRK14531 10 PPGAGKGTQAARLCA 24 (183)
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 461
>PHA02244 ATPase-like protein
Probab=73.50 E-value=2 Score=39.39 Aligned_cols=14 Identities=29% Similarity=0.610 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+|||+||++++.
T Consensus 128 pGtGKTtLA~aLA~ 141 (383)
T PHA02244 128 AGSGKNHIAEQIAE 141 (383)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 462
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=73.46 E-value=5.2 Score=33.34 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||.+++.+
T Consensus 10 ~GsGKTTll~~l~~ 23 (199)
T TIGR00101 10 VGSGKTALIEALTR 23 (199)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 463
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=73.45 E-value=1.8 Score=41.22 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=25.5
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcC-CCchhHHHHHh
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCN-GLPLASEILGG 114 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~-GlPLal~~ig~ 114 (348)
+++.++....+...+...+.. .. .+....|++.++ +++.|+..+..
T Consensus 175 ~l~~~el~~~L~~i~~~egi~-i~---~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 175 NISDELIIKRLQEVAEAEGIE-ID---REALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CccHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 677777777777665332211 11 244566666664 45666666554
No 464
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=73.41 E-value=2 Score=37.52 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||+|+++.+
T Consensus 8 SGSGKTTv~~~l~~ 21 (277)
T cd02029 8 SGAGTTTVKRAFEH 21 (277)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999887
No 465
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=73.36 E-value=2.1 Score=35.58 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||+++++-
T Consensus 31 nGsGKStll~al~~ 44 (197)
T cd03278 31 NGSGKSNIIDAIRW 44 (197)
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999975
No 466
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=73.35 E-value=2.1 Score=34.57 Aligned_cols=14 Identities=36% Similarity=0.717 Sum_probs=12.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||+.++..
T Consensus 11 ~~vGKTsL~~~~~~ 24 (172)
T cd04141 11 GGVGKSAVTMQFIS 24 (172)
T ss_pred CCCcHHHHHHHHHh
Confidence 69999999988765
No 467
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=73.32 E-value=2.2 Score=33.26 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||||.+++.+.
T Consensus 8 ~~~GKssl~~~l~~~ 22 (159)
T cd04159 8 QNSGKTTLVNVIAGG 22 (159)
T ss_pred CCCCHHHHHHHHccC
Confidence 599999999999885
No 468
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=73.28 E-value=3.3 Score=34.90 Aligned_cols=26 Identities=27% Similarity=0.150 Sum_probs=18.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (348)
.|.|||||++.+..-. ....+.+++.
T Consensus 40 nGsGKSTLl~~l~Gl~---~~~~G~i~~~ 65 (218)
T cd03266 40 NGAGKTTTLRMLAGLL---EPDAGFATVD 65 (218)
T ss_pred CCCCHHHHHHHHhCCc---CCCCceEEEC
Confidence 5999999999999832 2235666663
No 469
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=73.14 E-value=2.1 Score=35.96 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
.+|.||||+|+.+..
T Consensus 7 ~pGsGKsT~a~~La~ 21 (210)
T TIGR01351 7 PPGSGKGTQAKRIAE 21 (210)
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999976
No 470
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=73.10 E-value=6.2 Score=37.12 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=30.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhccc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSIST 50 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~~ 50 (348)
+|+||||+|..+..+..++... .++|++ -..+..++...++.....
T Consensus 203 pg~GKT~~al~ia~~~a~~~g~-~v~~fS--lEm~~~~l~~Rl~~~~~~ 248 (421)
T TIGR03600 203 PSMGKTTLALNIAENVALREGK-PVLFFS--LEMSAEQLGERLLASKSG 248 (421)
T ss_pred CCCCHHHHHHHHHHHHHHhCCC-cEEEEE--CCCCHHHHHHHHHHHHcC
Confidence 6999999999998644333332 345554 344677777777776543
No 471
>PRK00279 adk adenylate kinase; Reviewed
Probab=73.06 E-value=2.1 Score=36.09 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
.+|.||||+|+.+..
T Consensus 8 ~pGsGKsT~a~~la~ 22 (215)
T PRK00279 8 PPGAGKGTQAKFIAE 22 (215)
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999977
No 472
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=72.96 E-value=2.4 Score=38.66 Aligned_cols=18 Identities=28% Similarity=0.374 Sum_probs=15.1
Q ss_pred CCCcHHHHHHHHhcchhh
Q 043181 2 GGVGKTTLAQLLCNNVKV 19 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~ 19 (348)
.|.||||||+++.+..+.
T Consensus 87 PGsGKStla~~La~~l~~ 104 (361)
T smart00763 87 VGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 699999999999995433
No 473
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=72.94 E-value=2.3 Score=33.42 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||||+.++...
T Consensus 12 ~g~GKttl~~~l~~~ 26 (168)
T cd04163 12 PNVGKSTLLNALVGQ 26 (168)
T ss_pred CCCCHHHHHHHHhCC
Confidence 599999999998764
No 474
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.91 E-value=2 Score=40.81 Aligned_cols=15 Identities=53% Similarity=0.864 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+||||+|+.+++.
T Consensus 49 ~GtGKTTlAriLAk~ 63 (484)
T PRK14956 49 RGVGKTTIARILAKR 63 (484)
T ss_pred CCCCHHHHHHHHHHh
Confidence 599999999999873
No 475
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=72.87 E-value=2.3 Score=34.45 Aligned_cols=15 Identities=47% Similarity=0.554 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+.++.++
T Consensus 10 ~~vGKTsl~~~~~~~ 24 (175)
T cd01874 10 GAVGKTCLLISYTTN 24 (175)
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999998763
No 476
>PLN02796 D-glycerate 3-kinase
Probab=72.83 E-value=2 Score=38.88 Aligned_cols=14 Identities=50% Similarity=0.556 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.||||||+.+..
T Consensus 109 sGSGKSTLa~~L~~ 122 (347)
T PLN02796 109 QGCGKTTLVFALVY 122 (347)
T ss_pred CCCcHHHHHHHHHH
Confidence 59999999999998
No 477
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=72.82 E-value=2.3 Score=33.12 Aligned_cols=15 Identities=47% Similarity=0.696 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
||+||||+|..+...
T Consensus 9 gg~gkt~~~~~~a~~ 23 (139)
T cd02038 9 GGVGKTNISANLALA 23 (139)
T ss_pred CCCcHHHHHHHHHHH
Confidence 899999999998884
No 478
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.76 E-value=2.2 Score=35.70 Aligned_cols=26 Identities=23% Similarity=0.184 Sum_probs=18.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (348)
.|.|||||++.+..... -..+.+++.
T Consensus 35 nGsGKSTLl~~l~G~~~---~~~G~i~~~ 60 (210)
T cd03269 35 NGAGKTTTIRMILGIIL---PDSGEVLFD 60 (210)
T ss_pred CCCCHHHHHHHHhCCCC---CCceEEEEC
Confidence 59999999999998322 234666664
No 479
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=72.74 E-value=2.3 Score=34.14 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+.++.+.
T Consensus 8 ~~~GKTsl~~~l~~~ 22 (169)
T cd04158 8 DGAGKTTILFKLKQD 22 (169)
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998874
No 480
>PRK08356 hypothetical protein; Provisional
Probab=72.70 E-value=2.3 Score=35.21 Aligned_cols=13 Identities=38% Similarity=0.493 Sum_probs=11.8
Q ss_pred CCCCcHHHHHHHH
Q 043181 1 MGGVGKTTLAQLL 13 (348)
Q Consensus 1 mgGiGKTtLa~~v 13 (348)
+.|.||||+|+.+
T Consensus 13 ~~gsGK~t~a~~l 25 (195)
T PRK08356 13 KIAAGKTTVAKFF 25 (195)
T ss_pred CCCCCHHHHHHHH
Confidence 3699999999999
No 481
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=72.70 E-value=2.2 Score=33.86 Aligned_cols=14 Identities=36% Similarity=0.275 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||...+..
T Consensus 9 ~~~GKTsli~~l~~ 22 (159)
T cd04150 9 DAAGKTTILYKLKL 22 (159)
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999854
No 482
>PRK05595 replicative DNA helicase; Provisional
Probab=72.68 E-value=6.3 Score=37.42 Aligned_cols=47 Identities=15% Similarity=0.099 Sum_probs=31.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhcccc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSISTE 51 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~~~ 51 (348)
+|+||||+|..+..+...+... .++|+ +-..+..++..+++......
T Consensus 210 pg~GKT~~al~ia~~~a~~~g~-~vl~f--SlEms~~~l~~R~~a~~~~v 256 (444)
T PRK05595 210 PSMGKTTFALNIAEYAALREGK-SVAIF--SLEMSKEQLAYKLLCSEANV 256 (444)
T ss_pred CCCChHHHHHHHHHHHHHHcCC-cEEEE--ecCCCHHHHHHHHHHHhcCC
Confidence 5999999999998753333332 23444 34557778888877766543
No 483
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=72.68 E-value=2.2 Score=39.90 Aligned_cols=14 Identities=57% Similarity=0.669 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+.++.
T Consensus 117 ~GtGKT~lAr~lA~ 130 (412)
T PRK05342 117 TGSGKTLLAQTLAR 130 (412)
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999987
No 484
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=72.66 E-value=3.7 Score=36.69 Aligned_cols=14 Identities=57% Similarity=0.653 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.||||+++++.+
T Consensus 141 tGSGKTTll~al~~ 154 (299)
T TIGR02782 141 TGSGKTTLANALLA 154 (299)
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999987
No 485
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=72.59 E-value=2.3 Score=35.02 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=17.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||.+.+..... -..+.+++
T Consensus 27 nGsGKSTLl~~i~G~~~---~~~G~i~~ 51 (190)
T TIGR01166 27 NGAGKSTLLLHLNGLLR---PQSGAVLI 51 (190)
T ss_pred CCCCHHHHHHHHhCCCC---CCceeEEE
Confidence 59999999999998322 22455554
No 486
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=72.59 E-value=2.1 Score=41.58 Aligned_cols=14 Identities=64% Similarity=0.930 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+.+++
T Consensus 47 ~GvGKTTlAr~lAk 60 (546)
T PRK14957 47 RGVGKTTLGRLLAK 60 (546)
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999987
No 487
>PHA03133 thymidine kinase; Provisional
Probab=72.53 E-value=2.1 Score=38.81 Aligned_cols=13 Identities=54% Similarity=0.695 Sum_probs=11.6
Q ss_pred CCcHHHHHHHHhc
Q 043181 3 GVGKTTLAQLLCN 15 (348)
Q Consensus 3 GiGKTtLa~~v~~ 15 (348)
||||||+++++..
T Consensus 50 GvGKTTt~~~l~~ 62 (368)
T PHA03133 50 GLGKTTTAAALAA 62 (368)
T ss_pred cCCHHHHHHHHHH
Confidence 9999999987766
No 488
>PHA03138 thymidine kinase; Provisional
Probab=72.46 E-value=3.3 Score=37.33 Aligned_cols=13 Identities=46% Similarity=0.715 Sum_probs=10.9
Q ss_pred CCcHHHHHHHHhc
Q 043181 3 GVGKTTLAQLLCN 15 (348)
Q Consensus 3 GiGKTtLa~~v~~ 15 (348)
|+||||+++.+.+
T Consensus 22 GvGKTT~~~~~l~ 34 (340)
T PHA03138 22 GIGKTTAAEAFLH 34 (340)
T ss_pred CcCHHhHHHHHHH
Confidence 9999998886655
No 489
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=72.45 E-value=2.3 Score=35.25 Aligned_cols=15 Identities=40% Similarity=0.682 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+..+.+.
T Consensus 15 ~~vGKTsli~~l~~~ 29 (199)
T cd04110 15 SGVGKSSLLLRFADN 29 (199)
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998763
No 490
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=72.43 E-value=2.3 Score=35.96 Aligned_cols=25 Identities=28% Similarity=0.375 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||++.+..... -..+.+++
T Consensus 39 nGsGKSTLl~~l~Gl~~---~~~G~i~~ 63 (220)
T cd03293 39 SGCGKSTLLRIIAGLER---PTSGEVLV 63 (220)
T ss_pred CCCCHHHHHHHHhCCCC---CCceEEEE
Confidence 59999999999998322 22455554
No 491
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=72.39 E-value=4 Score=33.95 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=18.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
||+||||+|..+..-....++ .++.|+.
T Consensus 27 gG~GKTt~a~~LA~~la~~G~--rVllID~ 54 (204)
T TIGR01007 27 PGEGKSTTSANIAVAFAQAGY--KTLLIDG 54 (204)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--eEEEEeC
Confidence 799999999998883322221 3455554
No 492
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=72.39 E-value=2.4 Score=33.75 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 11 ~~vGKSsli~~~~~~ 25 (166)
T cd01869 11 SGVGKSCLLLRFADD 25 (166)
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998763
No 493
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=72.30 E-value=4.4 Score=35.85 Aligned_cols=20 Identities=35% Similarity=0.395 Sum_probs=15.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF 23 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F 23 (348)
.|.|||||...+.+ .++...
T Consensus 113 pGsGKTTLl~~l~~--~l~~~~ 132 (290)
T PRK10463 113 PGSGKTTLLTETLM--RLKDSV 132 (290)
T ss_pred CCCCHHHHHHHHHH--HhccCC
Confidence 59999999999998 554443
No 494
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=72.26 E-value=2.3 Score=35.15 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=18.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (348)
.|.|||||++.+...... -.+.+++.
T Consensus 35 nGsGKSTLl~~l~G~~~~---~~G~i~~~ 60 (195)
T PRK13541 35 NGCGKSSLLRMIAGIMQP---SSGNIYYK 60 (195)
T ss_pred CCCCHHHHHHHHhcCCCC---CCcEEEEC
Confidence 599999999999984322 13555553
No 495
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=72.23 E-value=2.3 Score=33.51 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+|||||...+.+
T Consensus 8 ~g~GKTtL~~~l~~ 21 (170)
T cd01876 8 SNVGKSSLINALTN 21 (170)
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999994
No 496
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=72.22 E-value=2 Score=41.25 Aligned_cols=15 Identities=47% Similarity=0.716 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+||||+|+.+++.
T Consensus 52 ~G~GKTT~ArilAk~ 66 (507)
T PRK06645 52 RGVGKTTSARIIAKA 66 (507)
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999999873
No 497
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=72.20 E-value=2.5 Score=33.12 Aligned_cols=15 Identities=33% Similarity=0.702 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||||..++.+.
T Consensus 8 ~~~GKTsli~~l~~~ 22 (160)
T cd00876 8 GGVGKSAITIQFVKG 22 (160)
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999998764
No 498
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=72.20 E-value=2.4 Score=34.00 Aligned_cols=15 Identities=47% Similarity=0.634 Sum_probs=12.7
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.++
T Consensus 9 ~~~GKTsl~~~~~~~ 23 (174)
T cd04135 9 GAVGKTCLLMSYAND 23 (174)
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999888654
No 499
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=72.18 E-value=2.4 Score=34.87 Aligned_cols=14 Identities=64% Similarity=1.025 Sum_probs=12.4
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||+.++.+
T Consensus 8 ~~vGKTsli~~l~~ 21 (190)
T cd04144 8 GGVGKTALTIQLCL 21 (190)
T ss_pred CCCCHHHHHHHHHh
Confidence 59999999999875
No 500
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=72.18 E-value=2.3 Score=35.64 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=18.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||++.+..... ...+.+++
T Consensus 35 nGsGKSTLl~~l~G~~~---~~~G~v~~ 59 (213)
T cd03301 35 SGCGKTTTLRMIAGLEE---PTSGRIYI 59 (213)
T ss_pred CCCCHHHHHHHHhCCCC---CCceEEEE
Confidence 59999999999998321 23455655
Done!