Query 043181
Match_columns 348
No_of_seqs 200 out of 2807
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 00:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 1.6E-33 5.3E-38 270.9 17.6 219 1-229 160-473 (549)
2 1vt4_I APAF-1 related killer D 99.9 1.3E-25 4.5E-30 221.5 13.3 198 1-221 158-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.9 4.5E-25 1.6E-29 231.2 14.3 204 1-223 155-448 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.9 1E-22 3.5E-27 197.8 14.4 203 1-223 155-448 (591)
5 4fcg_A Uncharacterized protein 98.8 6.5E-09 2.2E-13 93.0 5.5 75 273-347 220-295 (328)
6 4fcg_A Uncharacterized protein 98.7 1.7E-08 5.7E-13 90.4 8.0 67 273-339 244-311 (328)
7 4ezg_A Putative uncharacterize 98.7 4.2E-08 1.4E-12 80.9 9.2 110 228-346 58-175 (197)
8 4b8c_D Glucose-repressible alc 98.7 1.5E-08 5.2E-13 100.2 5.9 103 232-341 220-328 (727)
9 1a9n_A U2A', U2A'; complex (nu 98.6 5.8E-08 2E-12 78.5 6.9 69 276-346 58-129 (176)
10 3e6j_A Variable lymphocyte rec 98.6 7.3E-08 2.5E-12 81.5 6.9 61 278-339 108-169 (229)
11 4b8c_D Glucose-repressible alc 98.6 4E-08 1.4E-12 97.2 5.9 73 273-347 238-310 (727)
12 2ell_A Acidic leucine-rich nuc 98.6 8.8E-08 3E-12 76.7 6.8 106 233-347 46-164 (168)
13 1dce_A Protein (RAB geranylger 98.5 9.6E-08 3.3E-12 91.7 7.1 72 273-347 477-550 (567)
14 2r9u_A Variable lymphocyte rec 98.5 1.1E-07 3.6E-12 76.9 6.2 70 274-345 49-120 (174)
15 3m19_A Variable lymphocyte rec 98.5 1.6E-07 5.6E-12 80.4 7.4 61 278-339 103-165 (251)
16 2je0_A Acidic leucine-rich nuc 98.5 1.4E-07 4.9E-12 73.8 6.5 70 276-347 58-130 (149)
17 2wfh_A SLIT homolog 2 protein 98.5 1.3E-07 4.3E-12 77.8 6.1 65 275-340 71-137 (193)
18 2ell_A Acidic leucine-rich nuc 98.5 2.8E-07 9.5E-12 73.8 6.8 81 264-347 48-137 (168)
19 2v9t_B SLIT homolog 2 protein 98.4 2.8E-07 9.5E-12 77.4 6.9 70 275-346 73-144 (220)
20 2r9u_A Variable lymphocyte rec 98.4 2.5E-07 8.6E-12 74.6 6.1 71 273-347 26-98 (174)
21 3e6j_A Variable lymphocyte rec 98.4 3.1E-07 1.1E-11 77.6 6.8 73 273-347 78-152 (229)
22 2o6q_A Variable lymphocyte rec 98.4 3.7E-07 1.3E-11 79.1 7.3 67 278-346 129-197 (270)
23 2o6s_A Variable lymphocyte rec 98.4 4.5E-07 1.6E-11 75.2 7.5 109 232-346 48-165 (208)
24 4ezg_A Putative uncharacterize 98.4 4.2E-07 1.4E-11 74.8 7.1 108 233-347 41-154 (197)
25 3g39_A Variable lymphocyte rec 98.4 3.1E-07 1E-11 73.8 6.0 66 274-340 46-113 (170)
26 3rfs_A Internalin B, repeat mo 98.4 5.7E-07 1.9E-11 78.0 8.1 61 278-339 129-191 (272)
27 3rfs_A Internalin B, repeat mo 98.4 6.2E-07 2.1E-11 77.8 8.0 112 227-347 54-174 (272)
28 2v70_A SLIT-2, SLIT homolog 2 98.4 4.4E-07 1.5E-11 76.2 6.8 64 276-340 99-164 (220)
29 1p9a_G Platelet glycoprotein I 98.4 5.7E-07 2E-11 78.8 7.6 70 276-347 118-189 (290)
30 1dce_A Protein (RAB geranylger 98.4 3.4E-07 1.2E-11 87.9 6.6 69 273-345 455-523 (567)
31 2v70_A SLIT-2, SLIT homolog 2 98.4 3.5E-07 1.2E-11 76.8 5.8 71 274-346 73-145 (220)
32 2je0_A Acidic leucine-rich nuc 98.4 3.7E-07 1.3E-11 71.4 5.6 69 274-345 34-103 (149)
33 2o6s_A Variable lymphocyte rec 98.4 6.4E-07 2.2E-11 74.3 7.2 73 273-347 66-141 (208)
34 1xku_A Decorin; proteoglycan, 98.4 3.8E-07 1.3E-11 81.4 6.2 72 274-347 208-280 (330)
35 3g39_A Variable lymphocyte rec 98.4 4.8E-07 1.7E-11 72.6 6.1 71 273-347 23-95 (170)
36 1p9a_G Platelet glycoprotein I 98.4 1.2E-06 4E-11 76.9 9.0 63 277-340 143-206 (290)
37 3rgz_A Protein brassinosteroid 98.4 3.4E-07 1.2E-11 91.3 5.9 75 273-347 647-722 (768)
38 2o6q_A Variable lymphocyte rec 98.3 7.3E-07 2.5E-11 77.2 7.3 109 232-347 57-174 (270)
39 1ogq_A PGIP-2, polygalacturona 98.3 3.8E-07 1.3E-11 80.9 5.4 67 273-339 116-184 (313)
40 2ifg_A High affinity nerve gro 98.3 4.8E-07 1.6E-11 81.3 6.1 70 274-346 24-96 (347)
41 3vq2_A TLR4, TOLL-like recepto 98.3 5E-07 1.7E-11 87.5 6.5 108 232-346 52-169 (606)
42 2xot_A Amphoterin-induced prot 98.3 7.1E-07 2.4E-11 80.8 7.0 106 234-346 62-179 (361)
43 3zyj_A Leucine-rich repeat-con 98.3 7.9E-07 2.7E-11 82.7 7.5 70 277-347 131-202 (440)
44 2z62_A TOLL-like receptor 4, v 98.3 7E-07 2.4E-11 77.5 6.7 63 276-339 94-159 (276)
45 2v9t_B SLIT homolog 2 protein 98.3 7.3E-07 2.5E-11 74.8 6.4 71 274-346 48-120 (220)
46 3zyi_A Leucine-rich repeat-con 98.3 7.4E-07 2.5E-11 83.2 6.9 71 276-347 141-213 (452)
47 2o6r_A Variable lymphocyte rec 98.3 9.8E-07 3.3E-11 71.2 6.7 68 273-341 66-136 (177)
48 1w8a_A SLIT protein; signaling 98.3 4.8E-07 1.6E-11 74.2 4.9 76 264-340 53-137 (192)
49 1a9n_A U2A', U2A'; complex (nu 98.3 9.6E-07 3.3E-11 71.2 6.6 67 273-340 78-151 (176)
50 3o6n_A APL1; leucine-rich repe 98.3 1.4E-06 4.8E-11 79.6 8.1 68 275-344 110-179 (390)
51 1h6u_A Internalin H; cell adhe 98.3 2.1E-06 7.2E-11 75.8 8.9 65 278-346 125-189 (308)
52 3rgz_A Protein brassinosteroid 98.3 1.1E-06 3.7E-11 87.6 7.7 75 273-347 481-556 (768)
53 3m19_A Variable lymphocyte rec 98.3 1.3E-06 4.4E-11 74.8 7.0 72 274-347 75-148 (251)
54 1w8a_A SLIT protein; signaling 98.3 8.6E-07 2.9E-11 72.7 5.6 66 278-345 50-117 (192)
55 2wfh_A SLIT homolog 2 protein 98.3 1.2E-06 4E-11 71.9 6.3 73 273-347 45-119 (193)
56 4g8a_A TOLL-like receptor 4; l 98.3 4.9E-07 1.7E-11 87.7 4.7 68 275-344 93-162 (635)
57 1ozn_A Reticulon 4 receptor; N 98.3 1.5E-06 5.1E-11 75.8 7.0 61 278-339 149-211 (285)
58 2z63_A TOLL-like receptor 4, v 98.2 1E-06 3.6E-11 84.4 6.5 68 275-344 93-163 (570)
59 1h6u_A Internalin H; cell adhe 98.2 2.6E-06 9E-11 75.2 8.4 59 278-339 147-205 (308)
60 4ecn_A Leucine-rich repeat pro 98.2 7.8E-07 2.7E-11 89.3 5.3 72 273-346 506-589 (876)
61 1h6t_A Internalin B; cell adhe 98.2 3.5E-06 1.2E-10 73.8 8.9 59 278-339 130-188 (291)
62 4eco_A Uncharacterized protein 98.2 1.6E-06 5.6E-11 84.5 7.5 74 273-347 502-583 (636)
63 4ecn_A Leucine-rich repeat pro 98.2 1.6E-06 5.4E-11 87.1 7.4 74 273-347 742-823 (876)
64 3oja_B Anopheles plasmodium-re 98.2 2.2E-06 7.5E-11 82.9 8.2 69 275-345 116-186 (597)
65 1h6t_A Internalin B; cell adhe 98.2 3.8E-06 1.3E-10 73.6 8.9 108 228-346 60-172 (291)
66 1ozn_A Reticulon 4 receptor; N 98.2 1.6E-06 5.5E-11 75.6 6.5 70 274-345 121-192 (285)
67 1ogq_A PGIP-2, polygalacturona 98.2 7.6E-07 2.6E-11 78.9 4.3 74 273-346 92-166 (313)
68 2z80_A TOLL-like receptor 2, v 98.2 1.1E-06 3.9E-11 79.1 5.3 62 278-339 120-184 (353)
69 2o6r_A Variable lymphocyte rec 98.2 1.6E-06 5.6E-11 69.9 5.6 70 276-347 46-117 (177)
70 2z66_A Variable lymphocyte rec 98.2 2E-06 6.8E-11 75.8 6.6 65 274-339 167-233 (306)
71 4g8a_A TOLL-like receptor 4; l 98.2 1.5E-06 5.1E-11 84.2 6.3 109 231-346 71-189 (635)
72 3oja_B Anopheles plasmodium-re 98.2 1.6E-06 5.4E-11 83.9 6.4 58 279-339 144-202 (597)
73 2xwt_C Thyrotropin receptor; s 98.2 8.2E-07 2.8E-11 75.4 3.5 68 277-346 75-147 (239)
74 2xot_A Amphoterin-induced prot 98.2 1.9E-06 6.6E-11 77.9 6.1 72 274-347 80-153 (361)
75 3o6n_A APL1; leucine-rich repe 98.2 1.8E-06 6.3E-11 78.8 5.7 72 273-346 263-334 (390)
76 1m9s_A Internalin B; cell inva 98.2 5.5E-06 1.9E-10 80.0 9.2 67 276-346 125-191 (605)
77 3o53_A Protein LRIM1, AGAP0063 98.1 2.5E-06 8.5E-11 75.7 6.2 61 279-340 188-248 (317)
78 1xeu_A Internalin C; cellular 98.1 8.8E-06 3E-10 70.1 9.5 55 282-339 106-160 (263)
79 2ft3_A Biglycan; proteoglycan, 98.1 2.6E-06 8.8E-11 76.0 6.1 70 275-346 210-280 (332)
80 4eco_A Uncharacterized protein 98.1 7.6E-07 2.6E-11 86.8 2.8 73 274-347 239-322 (636)
81 2z80_A TOLL-like receptor 2, v 98.1 1.8E-06 6E-11 77.8 5.0 72 274-346 92-166 (353)
82 4fmz_A Internalin; leucine ric 98.1 7.2E-06 2.5E-10 73.4 9.0 61 277-339 105-165 (347)
83 2z66_A Variable lymphocyte rec 98.1 2.6E-06 9E-11 75.0 5.8 73 273-347 141-216 (306)
84 1m9s_A Internalin B; cell inva 98.1 4E-06 1.4E-10 81.0 7.5 66 276-345 147-212 (605)
85 3vq2_A TLR4, TOLL-like recepto 98.1 3E-06 1E-10 82.0 6.5 73 274-347 465-538 (606)
86 3zyi_A Leucine-rich repeat-con 98.1 2.5E-06 8.6E-11 79.5 5.7 74 273-347 114-189 (452)
87 3v47_A TOLL-like receptor 5B a 98.1 3.4E-06 1.2E-10 78.6 6.5 72 274-346 339-412 (455)
88 3v47_A TOLL-like receptor 5B a 98.1 3.9E-06 1.3E-10 78.1 6.9 73 273-347 314-388 (455)
89 1ds9_A Outer arm dynein; leuci 98.1 1.3E-07 4.5E-12 77.9 -3.0 78 264-345 47-130 (198)
90 1ds9_A Outer arm dynein; leuci 98.1 1.9E-07 6.5E-12 77.0 -2.2 101 231-340 43-151 (198)
91 4fmz_A Internalin; leucine ric 98.1 1.7E-05 5.9E-10 70.9 10.1 69 276-346 259-327 (347)
92 3oja_A Leucine-rich immune mol 98.1 3.9E-06 1.3E-10 79.1 6.1 62 278-340 187-248 (487)
93 3oja_A Leucine-rich immune mol 98.0 3.6E-06 1.2E-10 79.4 5.5 71 274-347 160-231 (487)
94 2xwt_C Thyrotropin receptor; s 98.0 2.3E-06 7.8E-11 72.6 3.7 68 278-346 123-196 (239)
95 2z81_A CD282 antigen, TOLL-lik 98.0 2.7E-06 9.3E-11 81.2 4.5 62 278-339 94-158 (549)
96 1ziw_A TOLL-like receptor 3; i 98.0 8E-06 2.7E-10 80.1 7.9 67 273-339 87-155 (680)
97 2z7x_B TOLL-like receptor 1, v 98.0 4.5E-06 1.5E-10 79.2 5.9 63 274-339 61-125 (520)
98 4glp_A Monocyte differentiatio 98.0 5.7E-06 1.9E-10 73.1 6.1 65 274-339 161-234 (310)
99 1wwl_A Monocyte differentiatio 98.0 8.2E-06 2.8E-10 72.1 7.0 60 276-339 247-306 (312)
100 1xeu_A Internalin C; cellular 98.0 4.8E-06 1.6E-10 71.8 5.2 77 264-346 40-122 (263)
101 3zyj_A Leucine-rich repeat-con 98.0 4.6E-06 1.6E-10 77.5 5.4 73 274-347 104-178 (440)
102 3o53_A Protein LRIM1, AGAP0063 98.0 4.9E-06 1.7E-10 73.8 5.3 70 275-347 161-231 (317)
103 2z63_A TOLL-like receptor 4, v 98.0 5.2E-06 1.8E-10 79.5 5.5 66 274-340 462-529 (570)
104 3j0a_A TOLL-like receptor 5; m 98.0 5.3E-06 1.8E-10 83.6 5.2 66 273-339 88-158 (844)
105 3a79_B TLR6, VLRB.59, TOLL-lik 98.0 9.1E-06 3.1E-10 77.9 6.5 63 274-339 92-156 (562)
106 1ziw_A TOLL-like receptor 3; i 98.0 8.8E-06 3E-10 79.8 6.5 70 274-345 65-136 (680)
107 2id5_A Lingo-1, leucine rich r 98.0 7.6E-06 2.6E-10 76.8 5.8 68 277-346 99-168 (477)
108 1xku_A Decorin; proteoglycan, 97.9 1.7E-05 5.7E-10 70.6 7.6 71 273-347 185-257 (330)
109 2z62_A TOLL-like receptor 4, v 97.9 1.3E-05 4.6E-10 69.3 6.7 44 277-321 119-164 (276)
110 4glp_A Monocyte differentiatio 97.9 1.4E-05 4.7E-10 70.6 6.9 61 275-339 241-304 (310)
111 2z81_A CD282 antigen, TOLL-lik 97.9 1.2E-05 4E-10 76.8 6.7 73 273-346 65-140 (549)
112 2ft3_A Biglycan; proteoglycan, 97.9 1.1E-05 3.8E-10 71.9 6.0 65 274-342 94-159 (332)
113 2z7x_B TOLL-like receptor 1, v 97.9 3.2E-05 1.1E-09 73.2 9.5 66 278-347 395-461 (520)
114 1wwl_A Monocyte differentiatio 97.9 7.7E-06 2.6E-10 72.3 4.6 107 234-344 93-215 (312)
115 1o6v_A Internalin A; bacterial 97.9 1.5E-05 5E-10 74.6 6.5 101 234-346 44-150 (466)
116 3a79_B TLR6, VLRB.59, TOLL-lik 97.9 1E-05 3.5E-10 77.6 5.2 68 275-346 69-137 (562)
117 2ifg_A High affinity nerve gro 97.8 1.3E-05 4.4E-10 71.9 5.1 65 275-340 49-114 (347)
118 3j0a_A TOLL-like receptor 5; m 97.8 1.8E-05 6.2E-10 79.7 6.7 62 278-339 119-184 (844)
119 2id5_A Lingo-1, leucine rich r 97.8 1.8E-05 6.2E-10 74.1 6.3 72 273-346 119-192 (477)
120 1o6v_A Internalin A; bacterial 97.8 1.2E-05 3.9E-10 75.3 4.8 101 227-338 59-165 (466)
121 2ast_B S-phase kinase-associat 97.8 2.3E-05 7.8E-10 69.8 6.1 65 276-340 162-233 (336)
122 3bz5_A Internalin-J, INLJ; leu 97.8 2.7E-05 9.2E-10 72.7 6.4 101 231-346 37-143 (457)
123 3t6q_A CD180 antigen; protein- 97.8 4E-05 1.4E-09 74.1 7.7 68 276-345 470-538 (606)
124 3bz5_A Internalin-J, INLJ; leu 97.7 3.8E-05 1.3E-09 71.7 6.7 64 278-346 123-186 (457)
125 3cvr_A Invasion plasmid antige 97.7 2.5E-05 8.6E-10 74.8 5.2 71 264-341 159-242 (571)
126 1jl5_A Outer protein YOPM; leu 97.7 3.8E-05 1.3E-09 71.6 6.3 102 229-346 146-253 (454)
127 4ay9_X Follicle-stimulating ho 97.7 2.4E-05 8.2E-10 70.3 4.2 71 274-347 169-241 (350)
128 3t6q_A CD180 antigen; protein- 97.7 6E-05 2E-09 72.8 7.2 67 273-339 292-360 (606)
129 2qen_A Walker-type ATPase; unk 97.7 0.0006 2E-08 60.7 13.2 138 65-220 202-348 (350)
130 2fna_A Conserved hypothetical 97.6 0.0009 3.1E-08 59.7 13.9 135 65-220 208-356 (357)
131 3cvr_A Invasion plasmid antige 97.6 0.00013 4.4E-09 69.9 8.5 59 280-346 138-196 (571)
132 1jl5_A Outer protein YOPM; leu 97.6 7.2E-05 2.5E-09 69.7 6.2 67 273-346 145-211 (454)
133 2ast_B S-phase kinase-associat 97.6 8.1E-05 2.8E-09 66.1 5.9 70 274-343 110-182 (336)
134 2ca6_A RAN GTPase-activating p 97.5 9.5E-05 3.2E-09 67.2 5.9 66 274-340 236-314 (386)
135 3rw6_A Nuclear RNA export fact 97.5 0.00012 4.2E-09 62.8 6.1 63 279-343 167-234 (267)
136 2ca6_A RAN GTPase-activating p 97.5 0.00012 3.9E-09 66.7 5.7 65 277-343 211-287 (386)
137 3g06_A SSPH2 (leucine-rich rep 97.5 8E-05 2.7E-09 72.1 4.6 58 279-340 238-295 (622)
138 1hqc_A RUVB; extended AAA-ATPa 97.4 0.00035 1.2E-08 61.8 8.0 83 64-150 166-256 (324)
139 3g06_A SSPH2 (leucine-rich rep 97.3 0.00019 6.7E-09 69.4 5.4 72 265-347 61-138 (622)
140 3e4g_A ATP synthase subunit S, 97.2 0.00031 1.1E-08 56.1 4.3 66 277-343 80-153 (176)
141 4ay9_X Follicle-stimulating ho 97.2 0.00029 1E-08 63.1 4.5 63 283-346 155-218 (350)
142 3e4g_A ATP synthase subunit S, 97.0 0.00095 3.2E-08 53.3 5.4 70 274-343 53-128 (176)
143 3goz_A Leucine-rich repeat-con 97.0 0.00074 2.5E-08 60.7 5.5 56 283-339 168-235 (362)
144 2v1u_A Cell division control p 96.9 0.026 9.1E-07 50.6 15.0 128 65-203 200-351 (387)
145 1z7x_W Ribonuclease inhibitor; 96.8 0.00023 8E-09 66.1 1.0 65 274-339 333-408 (461)
146 3rw6_A Nuclear RNA export fact 96.7 0.0018 6.3E-08 55.4 5.5 63 274-337 188-259 (267)
147 3goz_A Leucine-rich repeat-con 96.7 0.0014 4.6E-08 59.0 4.6 69 276-346 44-125 (362)
148 1z7x_W Ribonuclease inhibitor; 96.7 0.00048 1.6E-08 64.0 1.5 59 280-339 254-323 (461)
149 1njg_A DNA polymerase III subu 96.6 0.0061 2.1E-07 50.7 7.9 47 65-115 184-230 (250)
150 3un9_A NLR family member X1; l 96.6 0.00095 3.3E-08 60.4 2.8 65 274-339 175-249 (372)
151 2p1m_B Transport inhibitor res 96.3 0.0046 1.6E-07 59.2 6.2 62 278-339 180-245 (594)
152 3ogk_B Coronatine-insensitive 96.1 0.0049 1.7E-07 59.0 4.8 61 280-340 218-304 (592)
153 2chg_A Replication factor C sm 95.9 0.03 1E-06 45.7 8.6 44 65-112 160-203 (226)
154 1io0_A Tropomodulin; LRR prote 95.8 0.011 3.6E-07 47.7 5.2 62 277-339 88-161 (185)
155 3un9_A NLR family member X1; l 95.4 0.017 5.9E-07 52.0 5.4 62 280-343 153-224 (372)
156 3ogk_B Coronatine-insensitive 95.4 0.042 1.4E-06 52.4 8.4 38 279-316 267-304 (592)
157 1w5s_A Origin recognition comp 95.3 0.013 4.5E-07 53.3 4.3 132 65-204 214-372 (412)
158 3rfe_A Platelet glycoprotein I 95.2 0.017 5.9E-07 43.5 4.2 34 282-315 31-65 (130)
159 1io0_A Tropomodulin; LRR prote 95.1 0.031 1E-06 44.9 5.5 62 277-339 60-133 (185)
160 2p1m_B Transport inhibitor res 95.1 0.012 4.2E-07 56.2 3.6 60 280-340 128-195 (594)
161 2qby_B CDC6 homolog 3, cell di 94.4 0.02 7E-07 51.5 3.2 127 65-203 196-339 (384)
162 1sxj_B Activator 1 37 kDa subu 94.4 0.043 1.5E-06 47.9 5.2 45 65-113 165-210 (323)
163 2ra8_A Uncharacterized protein 94.2 0.03 1E-06 50.2 3.7 59 280-339 250-317 (362)
164 3pfi_A Holliday junction ATP-d 94.1 0.55 1.9E-05 41.2 11.7 42 65-110 183-224 (338)
165 1fnn_A CDC6P, cell division co 93.9 0.085 2.9E-06 47.4 6.1 45 2-48 53-98 (389)
166 3sb4_A Hypothetical leucine ri 93.8 0.07 2.4E-06 46.9 5.3 67 276-346 244-313 (329)
167 2qby_A CDC6 homolog 1, cell di 93.5 0.027 9.3E-07 50.5 2.1 29 1-31 53-84 (386)
168 2w58_A DNAI, primosome compone 93.2 0.053 1.8E-06 43.9 3.1 28 2-31 63-90 (202)
169 3sb4_A Hypothetical leucine ri 92.7 0.073 2.5E-06 46.8 3.6 56 281-338 225-283 (329)
170 1qhx_A CPT, protein (chloramph 92.0 0.057 1.9E-06 42.7 1.7 15 1-15 11-25 (178)
171 3bos_A Putative DNA replicatio 91.4 0.1 3.5E-06 43.2 2.8 29 2-32 61-89 (242)
172 3rfe_A Platelet glycoprotein I 90.6 0.25 8.7E-06 36.9 4.1 53 285-340 11-66 (130)
173 1iqp_A RFCS; clamp loader, ext 90.5 0.35 1.2E-05 42.0 5.6 45 65-113 168-212 (327)
174 3ec2_A DNA replication protein 90.4 0.091 3.1E-06 41.7 1.5 16 2-17 47-62 (180)
175 3cwq_A Para family chromosome 90.4 0.23 8E-06 40.5 4.0 30 2-34 10-39 (209)
176 3kb2_A SPBC2 prophage-derived 90.0 0.11 3.7E-06 40.7 1.6 15 1-15 9-23 (173)
177 3lw7_A Adenylate kinase relate 90.0 0.12 4.1E-06 40.4 1.9 13 1-13 9-21 (179)
178 2ra8_A Uncharacterized protein 90.0 0.23 7.8E-06 44.4 3.9 75 264-340 171-263 (362)
179 3hjn_A DTMP kinase, thymidylat 89.8 0.37 1.3E-05 38.9 4.7 42 2-45 9-50 (197)
180 2r8r_A Sensor protein; KDPD, P 89.7 0.21 7.1E-06 41.3 3.1 16 2-17 15-30 (228)
181 4dzz_A Plasmid partitioning pr 89.6 0.27 9.2E-06 39.6 3.8 29 2-32 11-39 (206)
182 3te6_A Regulatory protein SIR3 89.6 0.35 1.2E-05 42.3 4.7 50 2-51 54-108 (318)
183 3vaa_A Shikimate kinase, SK; s 89.5 0.13 4.4E-06 41.6 1.7 15 1-15 33-47 (199)
184 1jbk_A CLPB protein; beta barr 89.5 0.13 4.4E-06 40.7 1.7 15 2-16 52-66 (195)
185 3trf_A Shikimate kinase, SK; a 89.4 0.13 4.5E-06 40.8 1.7 15 1-15 13-27 (185)
186 1ly1_A Polynucleotide kinase; 89.3 0.14 4.7E-06 40.3 1.7 15 1-15 10-24 (181)
187 1zp6_A Hypothetical protein AT 89.0 0.17 5.7E-06 40.4 2.0 15 1-15 17-31 (191)
188 1nks_A Adenylate kinase; therm 88.7 0.16 5.3E-06 40.5 1.7 15 1-15 9-23 (194)
189 1kht_A Adenylate kinase; phosp 88.5 0.16 5.6E-06 40.3 1.7 15 1-15 11-25 (192)
190 3n70_A Transport activator; si 88.4 0.17 5.7E-06 38.6 1.6 15 2-16 33-47 (145)
191 1sxj_D Activator 1 41 kDa subu 88.3 0.89 3E-05 40.0 6.6 42 65-110 191-232 (353)
192 2kjq_A DNAA-related protein; s 88.3 0.25 8.6E-06 37.9 2.5 30 2-33 45-74 (149)
193 1kag_A SKI, shikimate kinase I 88.3 0.18 6.1E-06 39.5 1.7 15 1-15 12-26 (173)
194 2jaq_A Deoxyguanosine kinase; 88.2 0.18 6.1E-06 40.6 1.7 15 1-15 8-22 (205)
195 1via_A Shikimate kinase; struc 88.1 0.18 6.3E-06 39.6 1.7 15 1-15 12-26 (175)
196 3iij_A Coilin-interacting nucl 88.1 0.18 6.2E-06 39.9 1.7 15 1-15 19-33 (180)
197 2rhm_A Putative kinase; P-loop 88.0 0.18 6.2E-06 40.2 1.7 15 1-15 13-27 (193)
198 2p65_A Hypothetical protein PF 87.9 0.13 4.5E-06 40.5 0.7 15 2-16 52-66 (187)
199 1cp2_A CP2, nitrogenase iron p 87.8 0.2 6.7E-06 42.5 1.8 29 2-32 10-38 (269)
200 3t15_A Ribulose bisphosphate c 87.7 0.22 7.5E-06 43.1 2.1 14 2-15 45-58 (293)
201 3t61_A Gluconokinase; PSI-biol 87.6 0.2 6.8E-06 40.5 1.7 15 1-15 26-40 (202)
202 2z4s_A Chromosomal replication 87.5 0.18 6.2E-06 46.4 1.5 21 2-24 139-159 (440)
203 3kjh_A CO dehydrogenase/acetyl 87.4 0.37 1.3E-05 40.1 3.3 34 2-37 9-42 (254)
204 2cvh_A DNA repair and recombin 87.3 0.55 1.9E-05 38.1 4.3 35 2-41 29-63 (220)
205 3zq6_A Putative arsenical pump 87.2 0.58 2E-05 41.0 4.6 35 2-38 23-57 (324)
206 3bh0_A DNAB-like replicative h 87.1 0.78 2.7E-05 40.0 5.3 44 2-49 77-120 (315)
207 3ea0_A ATPase, para family; al 87.0 0.23 7.9E-06 41.3 1.8 29 2-32 14-43 (245)
208 3k9g_A PF-32 protein; ssgcid, 87.0 0.23 7.7E-06 42.1 1.8 29 2-33 37-65 (267)
209 2qor_A Guanylate kinase; phosp 87.0 0.23 7.8E-06 40.3 1.7 15 1-15 20-34 (204)
210 1n0w_A DNA repair protein RAD5 87.0 0.86 3E-05 37.6 5.4 39 2-40 33-75 (243)
211 1yrb_A ATP(GTP)binding protein 87.0 0.23 8E-06 41.8 1.8 15 2-16 23-37 (262)
212 3uie_A Adenylyl-sulfate kinase 86.9 0.25 8.6E-06 39.9 1.9 16 1-16 33-48 (200)
213 3co5_A Putative two-component 86.9 0.19 6.4E-06 38.3 1.0 15 2-16 36-50 (143)
214 2ph1_A Nucleotide-binding prot 86.9 0.23 8E-06 42.0 1.8 29 2-32 28-56 (262)
215 2yvu_A Probable adenylyl-sulfa 86.8 0.24 8.4E-06 39.3 1.7 16 1-16 21-36 (186)
216 2afh_E Nitrogenase iron protei 86.7 0.24 8.4E-06 42.5 1.8 29 2-32 11-39 (289)
217 3iqw_A Tail-anchored protein t 86.6 0.56 1.9E-05 41.4 4.1 32 2-35 25-56 (334)
218 2qz4_A Paraplegin; AAA+, SPG7, 86.6 0.23 7.8E-06 41.8 1.5 14 2-15 48-61 (262)
219 3h4m_A Proteasome-activating n 86.3 0.21 7.2E-06 42.7 1.2 14 2-15 60-73 (285)
220 2ze6_A Isopentenyl transferase 86.3 0.26 8.9E-06 41.6 1.7 15 1-15 9-23 (253)
221 1g3q_A MIND ATPase, cell divis 86.3 0.46 1.6E-05 39.3 3.3 29 2-32 12-40 (237)
222 3q9l_A Septum site-determining 86.2 0.27 9.3E-06 41.3 1.8 29 2-32 12-40 (260)
223 1knq_A Gluconate kinase; ALFA/ 86.2 0.27 9.2E-06 38.6 1.7 15 1-15 16-30 (175)
224 1zuh_A Shikimate kinase; alpha 86.2 0.28 9.4E-06 38.2 1.7 15 1-15 15-29 (168)
225 2r62_A Cell division protease 86.2 0.3 1E-05 41.4 2.1 14 2-15 53-66 (268)
226 2xj4_A MIPZ; replication, cell 86.0 0.6 2.1E-05 40.0 4.0 30 2-33 14-43 (286)
227 1e6c_A Shikimate kinase; phosp 85.9 0.29 9.9E-06 38.2 1.7 15 1-15 10-24 (173)
228 2z0h_A DTMP kinase, thymidylat 85.9 0.93 3.2E-05 36.0 4.8 15 2-16 9-23 (197)
229 1kgd_A CASK, peripheral plasma 85.8 0.32 1.1E-05 38.5 2.0 14 2-15 14-27 (180)
230 2oze_A ORF delta'; para, walke 85.8 0.28 9.7E-06 42.3 1.8 29 2-32 46-74 (298)
231 3cm0_A Adenylate kinase; ATP-b 85.8 0.29 1E-05 38.7 1.7 15 1-15 12-26 (186)
232 2bdt_A BH3686; alpha-beta prot 85.8 0.32 1.1E-05 38.7 1.9 15 1-15 10-24 (189)
233 1y63_A LMAJ004144AAA protein; 85.7 0.29 1E-05 38.9 1.7 15 1-15 18-32 (184)
234 2pt5_A Shikimate kinase, SK; a 85.7 0.3 1E-05 37.9 1.7 15 1-15 8-22 (168)
235 4eun_A Thermoresistant glucoki 85.6 0.33 1.1E-05 39.2 2.0 15 1-15 37-51 (200)
236 2iyv_A Shikimate kinase, SK; t 85.5 0.3 1E-05 38.6 1.7 15 1-15 10-24 (184)
237 2qgz_A Helicase loader, putati 85.5 0.46 1.6E-05 41.4 3.0 29 2-31 161-189 (308)
238 3fwy_A Light-independent proto 85.5 0.31 1.1E-05 42.6 1.8 29 2-32 57-85 (314)
239 1lv7_A FTSH; alpha/beta domain 85.4 0.29 9.8E-06 41.2 1.6 14 2-15 54-67 (257)
240 3end_A Light-independent proto 85.4 0.63 2.2E-05 40.3 3.8 30 2-33 50-79 (307)
241 3syl_A Protein CBBX; photosynt 85.4 0.43 1.5E-05 41.3 2.7 15 2-16 76-90 (309)
242 3a4m_A L-seryl-tRNA(SEC) kinas 85.3 0.31 1.1E-05 41.2 1.7 15 1-15 12-26 (260)
243 1l8q_A Chromosomal replication 85.2 0.48 1.7E-05 41.4 3.0 15 2-16 46-60 (324)
244 2plr_A DTMP kinase, probable t 85.1 0.33 1.1E-05 39.3 1.7 16 1-16 12-27 (213)
245 2vli_A Antibiotic resistance p 85.0 0.24 8.3E-06 39.1 0.9 15 1-15 13-27 (183)
246 1tev_A UMP-CMP kinase; ploop, 84.8 0.35 1.2E-05 38.5 1.7 15 1-15 11-25 (196)
247 3cf0_A Transitional endoplasmi 84.7 0.28 9.5E-06 42.5 1.2 14 2-15 58-71 (301)
248 4hlc_A DTMP kinase, thymidylat 84.7 1 3.5E-05 36.6 4.5 42 2-46 11-52 (205)
249 1in4_A RUVB, holliday junction 84.7 0.32 1.1E-05 42.8 1.6 41 65-109 179-219 (334)
250 2z43_A DNA repair and recombin 84.6 1.2 4.2E-05 38.9 5.3 42 2-43 116-161 (324)
251 1d2n_A N-ethylmaleimide-sensit 84.6 0.33 1.1E-05 41.2 1.6 14 2-15 73-86 (272)
252 2c95_A Adenylate kinase 1; tra 84.5 0.37 1.3E-05 38.5 1.7 15 1-15 17-31 (196)
253 1ye8_A Protein THEP1, hypothet 84.5 0.39 1.3E-05 38.1 1.8 16 2-17 9-24 (178)
254 1ixz_A ATP-dependent metallopr 84.4 0.34 1.2E-05 40.7 1.6 14 2-15 58-71 (254)
255 4edh_A DTMP kinase, thymidylat 84.4 1.3 4.4E-05 36.2 5.1 17 1-17 14-30 (213)
256 1gvn_B Zeta; postsegregational 84.4 0.33 1.1E-05 41.8 1.5 15 1-15 41-55 (287)
257 2cdn_A Adenylate kinase; phosp 84.3 0.38 1.3E-05 38.8 1.7 15 1-15 28-42 (201)
258 1byi_A Dethiobiotin synthase; 84.2 0.39 1.3E-05 39.3 1.8 15 2-16 11-25 (224)
259 1w5s_A Origin recognition comp 84.2 2.4 8.3E-05 38.0 7.3 46 1-46 60-109 (412)
260 3ug7_A Arsenical pump-driving 84.2 0.74 2.5E-05 40.8 3.8 15 2-16 35-49 (349)
261 2bwj_A Adenylate kinase 5; pho 84.2 0.38 1.3E-05 38.4 1.7 15 1-15 20-34 (199)
262 3fkq_A NTRC-like two-domain pr 84.1 0.79 2.7E-05 41.0 3.9 29 2-32 153-181 (373)
263 3io3_A DEHA2D07832P; chaperone 84.1 0.86 2.9E-05 40.4 4.1 30 2-33 27-58 (348)
264 1nn5_A Similar to deoxythymidy 84.1 1.1 3.9E-05 36.1 4.6 16 1-16 17-32 (215)
265 1hyq_A MIND, cell division inh 84.0 0.67 2.3E-05 39.0 3.2 29 2-32 12-40 (263)
266 3b9p_A CG5977-PA, isoform A; A 83.9 0.32 1.1E-05 41.9 1.2 14 2-15 63-76 (297)
267 1wcv_1 SOJ, segregation protei 83.8 0.3 1E-05 41.2 0.9 29 2-32 16-44 (257)
268 2if2_A Dephospho-COA kinase; a 83.8 0.41 1.4E-05 38.6 1.7 15 1-15 9-23 (204)
269 4gp7_A Metallophosphoesterase; 83.8 0.41 1.4E-05 37.5 1.7 14 2-15 18-31 (171)
270 3eie_A Vacuolar protein sortin 83.7 0.33 1.1E-05 42.5 1.2 14 2-15 60-73 (322)
271 2x8a_A Nuclear valosin-contain 83.7 0.38 1.3E-05 41.1 1.6 14 2-15 53-66 (274)
272 2pbr_A DTMP kinase, thymidylat 83.6 0.41 1.4E-05 38.1 1.7 15 1-15 8-22 (195)
273 1zd8_A GTP:AMP phosphotransfer 83.6 0.41 1.4E-05 39.4 1.7 15 1-15 15-29 (227)
274 1aky_A Adenylate kinase; ATP:A 83.6 0.42 1.4E-05 39.1 1.7 15 1-15 12-26 (220)
275 1zak_A Adenylate kinase; ATP:A 83.5 0.41 1.4E-05 39.2 1.7 15 1-15 13-27 (222)
276 4fdw_A Leucine rich hypothetic 83.4 0.96 3.3E-05 40.9 4.2 61 276-338 174-235 (401)
277 1u94_A RECA protein, recombina 83.4 1.2 4.1E-05 39.6 4.7 35 2-38 72-106 (356)
278 3c8u_A Fructokinase; YP_612366 83.1 0.43 1.5E-05 38.8 1.6 15 2-16 31-45 (208)
279 2i1q_A DNA repair and recombin 83.0 1.3 4.5E-05 38.5 4.9 42 2-43 107-162 (322)
280 1ex7_A Guanylate kinase; subst 82.9 0.44 1.5E-05 38.1 1.6 15 1-15 9-23 (186)
281 2wwf_A Thymidilate kinase, put 82.9 0.45 1.5E-05 38.5 1.7 16 1-16 18-33 (212)
282 2woj_A ATPase GET3; tail-ancho 82.8 1.3 4.6E-05 39.2 4.8 36 2-39 27-64 (354)
283 2j41_A Guanylate kinase; GMP, 82.8 0.46 1.6E-05 38.2 1.7 15 1-15 14-28 (207)
284 1qf9_A UMP/CMP kinase, protein 82.7 0.47 1.6E-05 37.6 1.7 15 1-15 14-28 (194)
285 2pez_A Bifunctional 3'-phospho 82.7 0.49 1.7E-05 37.3 1.7 15 1-15 13-27 (179)
286 1ukz_A Uridylate kinase; trans 82.5 0.48 1.6E-05 38.1 1.7 15 1-15 23-37 (203)
287 1v5w_A DMC1, meiotic recombina 82.4 1.9 6.5E-05 38.0 5.7 42 2-43 131-176 (343)
288 2woo_A ATPase GET3; tail-ancho 82.4 1.1 3.7E-05 39.4 4.0 29 2-32 28-56 (329)
289 3ez2_A Plasmid partition prote 82.4 0.48 1.6E-05 42.9 1.8 14 2-15 118-131 (398)
290 1m7g_A Adenylylsulfate kinase; 82.4 0.49 1.7E-05 38.5 1.7 16 1-16 33-48 (211)
291 2bbw_A Adenylate kinase 4, AK4 82.4 0.54 1.8E-05 39.3 2.0 15 1-15 35-49 (246)
292 3tr0_A Guanylate kinase, GMP k 82.2 0.56 1.9E-05 37.7 2.0 14 2-15 16-29 (205)
293 4a74_A DNA repair and recombin 82.2 1.7 5.7E-05 35.4 5.0 33 2-34 34-70 (231)
294 4eaq_A DTMP kinase, thymidylat 82.2 1.1 3.9E-05 36.9 3.9 16 1-16 34-49 (229)
295 3fb4_A Adenylate kinase; psych 82.1 0.51 1.7E-05 38.4 1.7 15 1-15 8-22 (216)
296 1iy2_A ATP-dependent metallopr 82.1 0.48 1.6E-05 40.4 1.6 14 2-15 82-95 (278)
297 1jjv_A Dephospho-COA kinase; P 81.9 0.59 2E-05 37.7 2.0 15 1-15 10-24 (206)
298 3v9p_A DTMP kinase, thymidylat 81.9 1.1 3.9E-05 36.9 3.8 17 1-17 33-49 (227)
299 2qt1_A Nicotinamide riboside k 81.9 0.59 2E-05 37.8 2.0 14 2-15 30-43 (207)
300 1xjc_A MOBB protein homolog; s 81.9 0.99 3.4E-05 35.4 3.2 14 2-15 13-26 (169)
301 1xwi_A SKD1 protein; VPS4B, AA 81.9 0.48 1.6E-05 41.5 1.5 14 2-15 54-67 (322)
302 2v54_A DTMP kinase, thymidylat 81.8 0.54 1.8E-05 37.8 1.7 15 1-15 12-26 (204)
303 3tau_A Guanylate kinase, GMP k 81.8 0.58 2E-05 38.0 2.0 14 2-15 17-30 (208)
304 3nwj_A ATSK2; P loop, shikimat 81.7 0.53 1.8E-05 39.6 1.7 15 1-15 56-70 (250)
305 3a00_A Guanylate kinase, GMP k 81.6 0.57 1.9E-05 37.2 1.8 14 2-15 10-23 (186)
306 1cke_A CK, MSSA, protein (cyti 81.5 0.55 1.9E-05 38.4 1.7 15 1-15 13-27 (227)
307 3be4_A Adenylate kinase; malar 81.5 0.56 1.9E-05 38.3 1.7 15 1-15 13-27 (217)
308 1htw_A HI0065; nucleotide-bind 81.4 0.58 2E-05 36.3 1.7 14 2-15 42-55 (158)
309 3dl0_A Adenylate kinase; phosp 81.3 0.56 1.9E-05 38.2 1.7 15 1-15 8-22 (216)
310 1e4v_A Adenylate kinase; trans 81.3 0.56 1.9E-05 38.2 1.7 15 1-15 8-22 (214)
311 3pg5_A Uncharacterized protein 81.3 0.96 3.3E-05 40.3 3.3 33 2-36 11-43 (361)
312 4tmk_A Protein (thymidylate ki 81.1 1.9 6.6E-05 35.1 4.9 44 2-46 12-55 (213)
313 2bjv_A PSP operon transcriptio 81.1 0.54 1.9E-05 39.7 1.6 15 2-16 38-52 (265)
314 3ld9_A DTMP kinase, thymidylat 81.1 1.3 4.6E-05 36.4 3.9 46 1-46 29-74 (223)
315 2qp9_X Vacuolar protein sortin 81.0 0.48 1.7E-05 42.1 1.3 14 2-15 93-106 (355)
316 1ak2_A Adenylate kinase isoenz 80.9 0.6 2E-05 38.6 1.7 15 1-15 24-38 (233)
317 1ofh_A ATP-dependent HSL prote 80.8 0.56 1.9E-05 40.4 1.6 14 2-15 59-72 (310)
318 1a5t_A Delta prime, HOLB; zinc 80.8 9.4 0.00032 33.3 9.6 39 65-112 166-204 (334)
319 2xb4_A Adenylate kinase; ATP-b 80.8 0.61 2.1E-05 38.3 1.7 15 1-15 8-22 (223)
320 3io5_A Recombination and repai 80.6 2 6.9E-05 37.4 4.9 37 2-38 37-73 (333)
321 3uk6_A RUVB-like 2; hexameric 80.5 0.57 2E-05 41.6 1.6 14 2-15 79-92 (368)
322 2zr9_A Protein RECA, recombina 80.3 1.8 6.1E-05 38.3 4.7 34 2-37 70-103 (349)
323 1uf9_A TT1252 protein; P-loop, 80.2 0.66 2.3E-05 37.1 1.7 15 1-15 16-30 (203)
324 3asz_A Uridine kinase; cytidin 80.1 0.69 2.4E-05 37.4 1.8 14 2-15 15-28 (211)
325 1lvg_A Guanylate kinase, GMP k 79.9 0.71 2.4E-05 37.1 1.8 14 2-15 13-26 (198)
326 3d8b_A Fidgetin-like protein 1 79.9 0.56 1.9E-05 41.7 1.3 14 2-15 126-139 (357)
327 1znw_A Guanylate kinase, GMP k 79.8 0.71 2.4E-05 37.4 1.8 14 2-15 29-42 (207)
328 3pvs_A Replication-associated 79.7 0.56 1.9E-05 43.2 1.3 42 65-109 164-211 (447)
329 3hr8_A Protein RECA; alpha and 79.6 2 6.7E-05 38.2 4.7 35 2-38 70-104 (356)
330 3lv8_A DTMP kinase, thymidylat 79.6 2.2 7.7E-05 35.4 4.8 44 1-45 35-78 (236)
331 4b4t_K 26S protease regulatory 79.6 0.6 2E-05 42.6 1.4 14 2-15 215-228 (428)
332 1ltq_A Polynucleotide kinase; 79.5 0.69 2.4E-05 39.8 1.7 15 1-15 10-24 (301)
333 4b4t_J 26S protease regulatory 79.5 0.6 2.1E-05 42.1 1.4 14 2-15 191-204 (405)
334 2zej_A Dardarin, leucine-rich 79.5 0.78 2.7E-05 36.1 1.9 15 2-16 11-25 (184)
335 1rz3_A Hypothetical protein rb 79.3 0.81 2.8E-05 36.8 2.0 14 2-15 31-44 (201)
336 4a1f_A DNAB helicase, replicat 79.2 2 6.8E-05 37.8 4.6 45 2-50 55-99 (338)
337 2p5t_B PEZT; postsegregational 79.1 0.5 1.7E-05 39.7 0.7 15 1-15 40-54 (253)
338 4fdw_A Leucine rich hypothetic 79.0 2.5 8.4E-05 38.2 5.3 58 278-339 296-355 (401)
339 2dr3_A UPF0273 protein PH0284; 79.0 1.4 4.7E-05 36.4 3.4 30 2-33 32-61 (247)
340 2ehv_A Hypothetical protein PH 79.0 0.77 2.6E-05 38.1 1.8 14 2-15 39-52 (251)
341 2hf9_A Probable hydrogenase ni 78.9 0.72 2.5E-05 37.7 1.6 15 2-16 47-61 (226)
342 3hws_A ATP-dependent CLP prote 78.8 0.69 2.4E-05 41.2 1.5 14 2-15 60-73 (363)
343 4fcw_A Chaperone protein CLPB; 78.8 0.7 2.4E-05 39.9 1.5 14 2-15 56-69 (311)
344 2w0m_A SSO2452; RECA, SSPF, un 78.7 0.8 2.7E-05 37.4 1.8 29 2-32 32-60 (235)
345 3lda_A DNA repair protein RAD5 78.7 2.7 9.2E-05 37.9 5.4 47 2-49 187-237 (400)
346 1z6g_A Guanylate kinase; struc 78.7 0.81 2.8E-05 37.5 1.8 14 2-15 32-45 (218)
347 1um8_A ATP-dependent CLP prote 78.7 0.7 2.4E-05 41.3 1.5 14 2-15 81-94 (376)
348 4b4t_M 26S protease regulatory 78.5 0.68 2.3E-05 42.3 1.4 15 1-15 223-237 (434)
349 3ney_A 55 kDa erythrocyte memb 78.5 0.82 2.8E-05 36.9 1.7 14 2-15 28-41 (197)
350 4e22_A Cytidylate kinase; P-lo 78.4 0.87 3E-05 38.2 2.0 15 1-15 35-49 (252)
351 2ck3_D ATP synthase subunit be 78.2 2.2 7.4E-05 39.3 4.6 45 2-47 162-207 (482)
352 1odf_A YGR205W, hypothetical 3 78.1 0.77 2.6E-05 39.5 1.6 15 2-16 40-54 (290)
353 1s96_A Guanylate kinase, GMP k 78.1 0.87 3E-05 37.4 1.8 14 2-15 25-38 (219)
354 3aez_A Pantothenate kinase; tr 78.0 0.85 2.9E-05 39.7 1.8 14 2-15 99-112 (312)
355 3tlx_A Adenylate kinase 2; str 78.0 0.84 2.9E-05 38.1 1.7 15 1-15 37-51 (243)
356 1vht_A Dephospho-COA kinase; s 77.9 0.85 2.9E-05 37.1 1.7 15 1-15 12-26 (218)
357 1fx0_B ATP synthase beta chain 77.9 2.4 8.2E-05 39.2 4.8 45 2-47 174-219 (498)
358 4b4t_H 26S protease regulatory 77.8 0.7 2.4E-05 42.4 1.3 18 2-21 252-269 (467)
359 4b4t_L 26S protease subunit RP 77.8 0.74 2.5E-05 42.1 1.4 14 2-15 224-237 (437)
360 2ce2_X GTPase HRAS; signaling 77.8 0.84 2.9E-05 34.7 1.6 15 2-16 12-26 (166)
361 3tmk_A Thymidylate kinase; pho 77.7 2.4 8.2E-05 34.7 4.4 15 1-15 13-27 (216)
362 1uj2_A Uridine-cytidine kinase 77.5 0.86 3E-05 38.2 1.7 15 1-15 30-44 (252)
363 1gtv_A TMK, thymidylate kinase 77.4 0.54 1.9E-05 38.1 0.4 15 2-16 9-23 (214)
364 2ga8_A Hypothetical 39.9 kDa p 77.4 0.63 2.1E-05 41.3 0.8 15 1-15 32-46 (359)
365 1xp8_A RECA protein, recombina 77.3 2.5 8.6E-05 37.6 4.7 35 2-38 83-117 (366)
366 2grj_A Dephospho-COA kinase; T 77.1 0.92 3.2E-05 36.4 1.7 15 1-15 20-34 (192)
367 1np6_A Molybdopterin-guanine d 77.1 0.95 3.3E-05 35.7 1.7 15 2-16 15-29 (174)
368 3ake_A Cytidylate kinase; CMP 77.1 0.91 3.1E-05 36.4 1.7 15 1-15 10-24 (208)
369 2i3b_A HCR-ntpase, human cance 77.0 0.98 3.4E-05 36.1 1.8 17 2-18 10-26 (189)
370 2px0_A Flagellar biosynthesis 77.0 0.94 3.2E-05 39.1 1.8 16 2-17 114-129 (296)
371 2vhj_A Ntpase P4, P4; non- hyd 77.0 0.91 3.1E-05 39.7 1.7 26 1-31 131-156 (331)
372 2wji_A Ferrous iron transport 77.0 1 3.5E-05 34.6 1.9 15 2-16 12-26 (165)
373 1oix_A RAS-related protein RAB 76.9 0.9 3.1E-05 36.1 1.6 15 2-16 38-52 (191)
374 2jeo_A Uridine-cytidine kinase 76.7 0.98 3.4E-05 37.6 1.8 14 2-15 34-47 (245)
375 3ez9_A Para; DNA binding, wing 76.5 0.53 1.8E-05 42.6 0.1 14 2-15 121-134 (403)
376 2dyk_A GTP-binding protein; GT 76.5 0.98 3.3E-05 34.3 1.6 15 2-16 10-24 (161)
377 1sxj_A Activator 1 95 kDa subu 76.5 0.88 3E-05 42.7 1.6 46 65-114 208-254 (516)
378 2ocp_A DGK, deoxyguanosine kin 76.4 0.99 3.4E-05 37.5 1.7 14 2-15 11-24 (241)
379 3igf_A ALL4481 protein; two-do 76.2 1 3.4E-05 40.4 1.8 28 2-31 11-38 (374)
380 3vfd_A Spastin; ATPase, microt 75.9 0.84 2.9E-05 41.0 1.3 14 2-15 157-170 (389)
381 3bgw_A DNAB-like replicative h 75.9 2.4 8.2E-05 38.9 4.3 43 2-48 206-248 (444)
382 1cr0_A DNA primase/helicase; R 75.8 1.1 3.6E-05 38.6 1.8 41 2-46 44-85 (296)
383 3con_A GTPase NRAS; structural 75.7 1 3.5E-05 35.5 1.6 15 2-16 30-44 (190)
384 2wjg_A FEOB, ferrous iron tran 75.6 1.2 4E-05 35.0 1.9 15 2-16 16-30 (188)
385 2f9l_A RAB11B, member RAS onco 75.6 1 3.5E-05 35.9 1.6 15 2-16 14-28 (199)
386 3crm_A TRNA delta(2)-isopenten 75.5 1.1 3.6E-05 39.3 1.7 15 1-15 13-27 (323)
387 1p6x_A Thymidine kinase; P-loo 75.3 1.1 3.8E-05 39.4 1.8 14 3-16 17-30 (334)
388 2pcj_A ABC transporter, lipopr 75.3 1.1 3.9E-05 36.8 1.8 25 2-29 39-63 (224)
389 2zts_A Putative uncharacterize 75.3 1.5 5.2E-05 36.2 2.6 40 2-44 39-78 (251)
390 1ihu_A Arsenical pump-driving 75.2 2.2 7.6E-05 40.7 4.1 30 2-33 17-46 (589)
391 2wsm_A Hydrogenase expression/ 75.2 1.1 3.6E-05 36.5 1.6 15 2-16 39-53 (221)
392 2zan_A Vacuolar protein sortin 75.1 1 3.5E-05 41.4 1.6 14 2-15 176-189 (444)
393 1nlf_A Regulatory protein REPA 75.1 1.1 3.9E-05 38.0 1.8 14 2-15 39-52 (279)
394 3zvl_A Bifunctional polynucleo 75.0 1.2 4.1E-05 40.5 2.0 15 1-15 266-280 (416)
395 3r20_A Cytidylate kinase; stru 75.0 1.2 3.9E-05 37.1 1.7 15 1-15 17-31 (233)
396 2f6r_A COA synthase, bifunctio 74.9 1.2 4.2E-05 38.0 2.0 15 1-15 83-97 (281)
397 1jr3_A DNA polymerase III subu 74.9 1 3.6E-05 39.9 1.6 45 65-113 177-221 (373)
398 1tue_A Replication protein E1; 74.8 0.82 2.8E-05 37.2 0.7 14 2-15 67-80 (212)
399 4b4t_I 26S protease regulatory 74.7 0.94 3.2E-05 41.2 1.2 14 2-15 225-238 (437)
400 3u61_B DNA polymerase accessor 74.7 1.1 3.7E-05 39.0 1.6 14 2-15 57-70 (324)
401 1g8f_A Sulfate adenylyltransfe 74.7 1.1 3.8E-05 41.8 1.8 16 1-16 403-418 (511)
402 1rj9_A FTSY, signal recognitio 74.6 1.2 4.1E-05 38.6 1.8 27 2-31 111-137 (304)
403 1e2k_A Thymidine kinase; trans 74.4 1.2 4.1E-05 39.1 1.8 13 3-15 14-26 (331)
404 1sxj_E Activator 1 40 kDa subu 74.4 0.92 3.1E-05 40.0 1.1 14 2-15 45-58 (354)
405 1sxj_C Activator 1 40 kDa subu 74.3 1.1 3.7E-05 39.4 1.5 15 2-16 55-69 (340)
406 3b85_A Phosphate starvation-in 74.3 1.1 3.7E-05 36.5 1.4 15 2-16 31-45 (208)
407 2r44_A Uncharacterized protein 74.1 0.83 2.8E-05 40.0 0.7 14 2-15 55-68 (331)
408 2nzj_A GTP-binding protein REM 74.0 1.4 4.7E-05 34.0 1.9 15 2-16 13-27 (175)
409 1z2a_A RAS-related protein RAB 74.0 1.2 4.2E-05 34.0 1.6 15 2-16 14-28 (168)
410 1g41_A Heat shock protein HSLU 73.9 1.2 4.1E-05 40.8 1.7 14 2-15 59-72 (444)
411 1p5z_B DCK, deoxycytidine kina 73.8 0.92 3.2E-05 38.2 0.9 14 2-15 33-46 (263)
412 3pxg_A Negative regulator of g 73.7 1.1 3.6E-05 41.6 1.3 14 2-15 210-223 (468)
413 1ls1_A Signal recognition part 73.7 1.3 4.4E-05 38.2 1.8 15 2-16 107-121 (295)
414 1ojl_A Transcriptional regulat 73.6 1.2 4.1E-05 38.6 1.6 15 2-16 34-48 (304)
415 3tif_A Uncharacterized ABC tra 73.6 1.3 4.5E-05 36.7 1.8 26 2-30 40-65 (235)
416 3nbx_X ATPase RAVA; AAA+ ATPas 73.6 1.2 4.2E-05 41.5 1.8 14 2-15 50-63 (500)
417 2onk_A Molybdate/tungstate ABC 73.6 1.3 4.6E-05 36.8 1.8 14 2-15 33-46 (240)
418 3a8t_A Adenylate isopentenyltr 73.4 1.4 4.9E-05 38.7 2.0 15 1-15 48-62 (339)
419 1g8p_A Magnesium-chelatase 38 73.3 0.78 2.7E-05 40.3 0.3 14 2-15 54-67 (350)
420 2vp4_A Deoxynucleoside kinase; 73.0 1.1 3.8E-05 36.9 1.2 14 2-15 29-42 (230)
421 3d3q_A TRNA delta(2)-isopenten 72.9 1.3 4.5E-05 39.0 1.7 14 2-15 16-29 (340)
422 3tqc_A Pantothenate kinase; bi 72.9 1.4 4.7E-05 38.5 1.8 14 2-15 101-114 (321)
423 2erx_A GTP-binding protein DI- 72.9 1.5 5.2E-05 33.5 1.9 15 2-16 12-26 (172)
424 1sgw_A Putative ABC transporte 72.9 1.4 4.9E-05 35.9 1.8 14 2-15 44-57 (214)
425 3q72_A GTP-binding protein RAD 72.9 1.5 5E-05 33.5 1.8 15 2-16 11-25 (166)
426 2cbz_A Multidrug resistance-as 72.8 1.4 4.9E-05 36.6 1.8 14 2-15 40-53 (237)
427 2c9o_A RUVB-like 1; hexameric 72.8 1.2 4.2E-05 40.9 1.6 15 2-16 72-86 (456)
428 2ce7_A Cell division protein F 72.8 1.3 4.5E-05 41.0 1.7 15 2-16 58-72 (476)
429 2f1r_A Molybdopterin-guanine d 72.8 0.79 2.7E-05 36.0 0.2 17 2-18 11-27 (171)
430 1pzn_A RAD51, DNA repair and r 72.8 2.8 9.7E-05 37.0 3.9 35 2-36 140-178 (349)
431 1b0u_A Histidine permease; ABC 72.7 1.4 4.9E-05 37.2 1.8 25 2-29 41-65 (262)
432 1ji0_A ABC transporter; ATP bi 72.6 1.5 5E-05 36.6 1.8 25 2-29 41-65 (240)
433 1u8z_A RAS-related protein RAL 72.4 1.4 4.9E-05 33.5 1.6 15 2-16 13-27 (168)
434 2d2e_A SUFC protein; ABC-ATPas 72.4 1.5 5.1E-05 36.8 1.8 14 2-15 38-51 (250)
435 1f6b_A SAR1; gtpases, N-termin 72.2 1.5 5.2E-05 34.9 1.8 15 2-16 34-48 (198)
436 3bfv_A CAPA1, CAPB2, membrane 72.1 2.5 8.7E-05 35.8 3.3 29 2-32 92-120 (271)
437 2qnr_A Septin-2, protein NEDD5 72.0 1.5 5.3E-05 37.8 1.9 14 2-15 27-40 (301)
438 2dhr_A FTSH; AAA+ protein, hex 72.0 1.3 4.4E-05 41.3 1.5 14 2-15 73-86 (499)
439 1zu4_A FTSY; GTPase, signal re 72.0 1.5 5.1E-05 38.3 1.8 15 2-16 114-128 (320)
440 1g6h_A High-affinity branched- 71.9 1.5 5.2E-05 36.9 1.8 25 2-29 42-66 (257)
441 3b9q_A Chloroplast SRP recepto 71.9 1.5 5.2E-05 37.9 1.8 32 2-36 109-140 (302)
442 2olj_A Amino acid ABC transpor 71.9 1.5 5.2E-05 37.0 1.8 25 2-29 59-83 (263)
443 3cf2_A TER ATPase, transitiona 71.9 1.3 4.5E-05 43.8 1.6 15 2-16 247-261 (806)
444 3vr4_D V-type sodium ATPase su 71.9 2.7 9.1E-05 38.5 3.4 43 2-46 160-207 (465)
445 4g1u_C Hemin import ATP-bindin 71.7 1.5 5.3E-05 37.1 1.8 26 2-30 46-71 (266)
446 1fzq_A ADP-ribosylation factor 71.7 1.6 5.4E-05 34.2 1.8 15 2-16 25-39 (181)
447 2eyu_A Twitching motility prot 71.6 2.1 7.1E-05 36.1 2.6 14 2-15 34-47 (261)
448 3m6a_A ATP-dependent protease 71.6 1.3 4.6E-05 41.8 1.5 14 2-15 117-130 (543)
449 1of1_A Thymidine kinase; trans 71.5 1.5 5.3E-05 39.1 1.8 13 3-15 59-71 (376)
450 2chq_A Replication factor C sm 71.4 1.4 4.8E-05 37.9 1.5 15 2-16 47-61 (319)
451 2zu0_C Probable ATP-dependent 71.4 1.6 5.5E-05 37.0 1.8 14 2-15 55-68 (267)
452 1mv5_A LMRA, multidrug resista 71.3 1.6 5.5E-05 36.4 1.8 25 2-29 37-61 (243)
453 2ff7_A Alpha-hemolysin translo 71.3 1.6 5.5E-05 36.5 1.8 26 2-30 44-69 (247)
454 3gfo_A Cobalt import ATP-bindi 71.3 1.6 5.5E-05 37.2 1.8 25 2-29 43-67 (275)
455 2cxx_A Probable GTP-binding pr 71.3 1.7 5.9E-05 34.0 1.9 15 2-16 10-24 (190)
456 2pze_A Cystic fibrosis transme 71.3 1.6 5.6E-05 36.0 1.8 14 2-15 43-56 (229)
457 2gj8_A MNME, tRNA modification 71.1 1.8 6E-05 33.7 1.9 15 2-16 13-27 (172)
458 2qmh_A HPR kinase/phosphorylas 71.0 1.6 5.6E-05 35.2 1.7 14 2-15 43-56 (205)
459 3cio_A ETK, tyrosine-protein k 70.9 1.6 5.5E-05 37.7 1.8 29 2-32 114-142 (299)
460 3kta_A Chromosome segregation 70.9 1.7 5.9E-05 34.0 1.8 14 2-15 35-48 (182)
461 2orw_A Thymidine kinase; TMTK, 70.9 1.7 5.9E-05 34.4 1.8 16 2-17 12-27 (184)
462 1m7b_A RND3/RHOE small GTP-bin 70.9 1.6 5.5E-05 34.2 1.6 15 2-16 16-30 (184)
463 1vma_A Cell division protein F 70.9 1.6 5.6E-05 37.8 1.8 16 2-17 113-128 (306)
464 1vpl_A ABC transporter, ATP-bi 70.8 1.7 5.8E-05 36.6 1.8 25 2-29 50-74 (256)
465 3q85_A GTP-binding protein REM 70.8 1.8 6.2E-05 33.1 1.9 14 2-15 11-24 (169)
466 2qi9_C Vitamin B12 import ATP- 70.7 1.7 5.8E-05 36.4 1.8 24 2-29 35-58 (249)
467 3llu_A RAS-related GTP-binding 70.6 1.8 6.2E-05 34.3 1.9 15 2-16 29-43 (196)
468 1z08_A RAS-related protein RAB 70.6 1.7 5.6E-05 33.3 1.6 15 2-16 15-29 (170)
469 1c1y_A RAS-related protein RAP 70.5 1.6 5.6E-05 33.2 1.6 15 2-16 12-26 (167)
470 1sq5_A Pantothenate kinase; P- 70.5 1.7 5.8E-05 37.7 1.8 14 2-15 89-102 (308)
471 2yz2_A Putative ABC transporte 70.5 1.7 5.9E-05 36.8 1.8 25 2-29 42-66 (266)
472 3lnc_A Guanylate kinase, GMP k 70.4 1.1 3.8E-05 36.9 0.6 14 2-15 36-50 (231)
473 2ged_A SR-beta, signal recogni 70.4 1.6 5.6E-05 34.3 1.6 15 2-16 57-71 (193)
474 2ghi_A Transport protein; mult 70.4 1.7 5.9E-05 36.6 1.8 24 2-29 55-78 (260)
475 2xxa_A Signal recognition part 70.4 5.8 0.0002 36.2 5.4 16 2-17 109-124 (433)
476 2ixe_A Antigen peptide transpo 70.3 1.7 5.9E-05 36.9 1.8 25 2-29 54-78 (271)
477 2ihy_A ABC transporter, ATP-bi 70.2 1.8 6E-05 37.0 1.8 14 2-15 56-69 (279)
478 3hu3_A Transitional endoplasmi 70.2 1.3 4.4E-05 41.2 1.1 14 2-15 247-260 (489)
479 1ek0_A Protein (GTP-binding pr 70.1 1.7 5.9E-05 33.1 1.6 15 2-16 12-26 (170)
480 3pqc_A Probable GTP-binding pr 70.1 1.9 6.4E-05 33.9 1.9 15 2-16 32-46 (195)
481 1r8s_A ADP-ribosylation factor 70.1 1.7 5.8E-05 33.0 1.6 14 2-15 9-22 (164)
482 2fn4_A P23, RAS-related protei 69.9 1.7 5.8E-05 33.6 1.6 15 2-16 18-32 (181)
483 3tqf_A HPR(Ser) kinase; transf 69.9 1.9 6.4E-05 34.0 1.7 14 2-15 25-38 (181)
484 2hxs_A RAB-26, RAS-related pro 69.7 2 6.8E-05 33.2 2.0 15 2-16 15-29 (178)
485 1svi_A GTP-binding protein YSX 69.7 1.9 6.6E-05 33.9 1.9 15 2-16 32-46 (195)
486 3c5c_A RAS-like protein 12; GD 69.7 1.8 6E-05 34.1 1.6 15 2-16 30-44 (187)
487 3t1o_A Gliding protein MGLA; G 69.7 1.7 5.9E-05 34.1 1.6 14 2-15 23-36 (198)
488 2nq2_C Hypothetical ABC transp 69.6 1.8 6.2E-05 36.3 1.8 14 2-15 40-53 (253)
489 2lkc_A Translation initiation 69.6 1.9 6.7E-05 33.2 1.9 15 2-16 17-31 (178)
490 3tw8_B RAS-related protein RAB 69.5 1.9 6.6E-05 33.3 1.8 16 2-17 18-33 (181)
491 1sky_E F1-ATPase, F1-ATP synth 69.4 3.1 0.00011 38.3 3.4 44 2-46 160-204 (473)
492 1z0j_A RAB-22, RAS-related pro 69.4 1.8 6.2E-05 33.0 1.6 15 2-16 15-29 (170)
493 2b8t_A Thymidine kinase; deoxy 69.4 3.6 0.00012 33.8 3.5 28 2-31 21-48 (223)
494 1m2o_B GTP-binding protein SAR 69.3 1.8 6E-05 34.3 1.6 15 2-16 32-46 (190)
495 3sop_A Neuronal-specific septi 69.3 1.7 5.8E-05 36.9 1.5 15 2-16 11-25 (270)
496 3ihw_A Centg3; RAS, centaurin, 69.2 1.8 6.1E-05 34.1 1.6 15 2-16 29-43 (184)
497 2q6t_A DNAB replication FORK h 69.2 5.4 0.00019 36.5 5.0 45 2-49 209-253 (444)
498 1ky3_A GTP-binding protein YPT 69.1 1.8 6.3E-05 33.4 1.6 15 2-16 17-31 (182)
499 3la6_A Tyrosine-protein kinase 69.1 3.4 0.00012 35.3 3.4 29 2-32 102-130 (286)
500 3cbq_A GTP-binding protein REM 68.9 1.7 6E-05 34.5 1.5 14 2-15 32-45 (195)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.6e-33 Score=270.87 Aligned_cols=219 Identities=13% Similarity=0.161 Sum_probs=168.3
Q ss_pred CCCCcHHHHHHHHhc--chhhhcCCCeeEEEEcCCCC--CHHHHHHHHHHhcccccc-----CCCC--------------
Q 043181 1 MGGVGKTTLAQLLCN--NVKVKNRFHLETWVYLFEDF--DVFRITKTMLQSISTEAV-----RDND-------------- 57 (348)
Q Consensus 1 mgGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~~~~~--~~~~l~~~il~~l~~~~~-----~~~~-------------- 57 (348)
||||||||||+++|+ +.+++.+|++++||++++.. +...+++.|+.+++.... ..++
T Consensus 160 ~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L 239 (549)
T 2a5y_B 160 RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL 239 (549)
T ss_dssp STTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHH
Confidence 899999999999998 67899999999999999885 788899999988865411 0000
Q ss_pred ---------------hhh------------------------------hhcCCCChHHHHHHHHHhhcCCCCCCcChhHH
Q 043181 58 ---------------LNL------------------------------LQLKKWSDDDCLCVFTQRSSRRTDFNMHMHLK 92 (348)
Q Consensus 58 ---------------~~~------------------------------l~~~~l~~~~a~~Lf~~~a~~~~~~~~~~~~~ 92 (348)
.++ +...+|+.++||+||.+.+|+... ++.+.
T Consensus 240 ~~~kr~LlVLDdv~~~~~~~~~~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~ 316 (549)
T 2a5y_B 240 IDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEE 316 (549)
T ss_dssp TTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHH
T ss_pred cCCCcEEEEEECCCCchhhcccccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCC---chhHH
Confidence 000 011189999999999999987642 46788
Q ss_pred HHHHHHHHHcCCCchhHHHHHhhhcCCCCchhHHHHhc-------------CcccccccCchHHHHHHh-----------
Q 043181 93 EIGEKIVKKCNGLPLASEILGGLLHGKVDCIDWEDVLN-------------SKAISCHYLLPHLKRCFS----------- 148 (348)
Q Consensus 93 ~~~~~i~~~c~GlPLal~~ig~~L~~~~~~~~w~~~l~-------------~~~~s~~~L~~~~k~~fl----------- 148 (348)
+++++|+++|+|+||||+++|+.|+.+ ..+ |...+. .+.+||+.||.++|.||+
T Consensus 317 ~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w~-~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~ 394 (549)
T 2a5y_B 317 DVLNKTIELSSGNPATLMMFFKSCEPK-TFE-KMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALA 394 (549)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTCCSS-SHH-HHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTT
T ss_pred HHHHHHHHHhCCChHHHHHHHHHhccc-hHH-HHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhh
Confidence 999999999999999999999999876 322 222221 123999999999999999
Q ss_pred HhccCCCCCccchhHHHHHHHHc--CCCccCCCCchHHHHHHHHHHHHHhCCccceeCC-CcceEeechHHHHHHHhhcc
Q 043181 149 YCSIFPEDCKFEEEELILLRMAQ--GFLRHENSEKPVEQLGHQYSGELQSRSHFRQSSS-NVSRFAMHDFINDLAHKYDG 225 (348)
Q Consensus 149 ~~~~fp~~~~i~~~~li~~w~a~--g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~-~~~~~~mh~li~~~~~~~~~ 225 (348)
|||+||+++.++ +..|+|+ ||+.........++.++ ++.+|+++||++.... ....|+|||+||+||++...
T Consensus 395 ~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~ 469 (549)
T 2a5y_B 395 FAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVD 469 (549)
T ss_dssp GGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSC
T ss_pred heeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHH
Confidence 999999999988 8899999 99987543556677777 9999999999998653 35689999999999997654
Q ss_pred cccc
Q 043181 226 IKRF 229 (348)
Q Consensus 226 ~~~~ 229 (348)
.+..
T Consensus 470 ~~~~ 473 (549)
T 2a5y_B 470 AQTI 473 (549)
T ss_dssp THHH
T ss_pred HHHH
Confidence 4433
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.93 E-value=1.3e-25 Score=221.54 Aligned_cols=198 Identities=14% Similarity=0.169 Sum_probs=151.2
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCe-eEEEEcCCCCCHHHHHHHHHHhccccc---c-----------------------
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHL-ETWVYLFEDFDVFRITKTMLQSISTEA---V----------------------- 53 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~~~~~~~~~l~~~il~~l~~~~---~----------------------- 53 (348)
||||||||||+++|++.+++.+|+. ++|+++++.++...++..++..++... .
T Consensus 158 mGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~l 237 (1221)
T 1vt4_I 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237 (1221)
T ss_dssp STTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHH
Confidence 8999999999999998889999997 899999998887777666655322110 0
Q ss_pred --------------CCCChh----------------------------hhhcC------CCChHHHHHHHHHhhcCCCCC
Q 043181 54 --------------RDNDLN----------------------------LLQLK------KWSDDDCLCVFTQRSSRRTDF 85 (348)
Q Consensus 54 --------------~~~~~~----------------------------~l~~~------~l~~~~a~~Lf~~~a~~~~~~ 85 (348)
+.++.+ .+... +|+.+|||+||++.. +...
T Consensus 238 L~~l~~KRvLLVLDDVwd~eqLe~f~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~~- 315 (1221)
T 1vt4_I 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRP- 315 (1221)
T ss_dssp HHHSTTSSCEEEEESCCCHHHHHHHHSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCCT-
T ss_pred HHhhcCCCEEEEEeCcChHHHHHhhCCCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCCH-
Confidence 000000 01112 689999999999984 3221
Q ss_pred CcChhHHHHHHHHHHHcCCCchhHHHHHhhhcCCC-CchhHHHHh-----cCcccccccCchHH-HHHHhHhccCCCCCc
Q 043181 86 NMHMHLKEIGEKIVKKCNGLPLASEILGGLLHGKV-DCIDWEDVL-----NSKAISCHYLLPHL-KRCFSYCSIFPEDCK 158 (348)
Q Consensus 86 ~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~-~~~~w~~~l-----~~~~~s~~~L~~~~-k~~fl~~~~fp~~~~ 158 (348)
.++..++ |+|+||||+++|+.|+++. +.+.|+... ..+..||+.|+++. |.||++||+||+++.
T Consensus 316 ------eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~ 386 (1221)
T 1vt4_I 316 ------QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386 (1221)
T ss_dssp ------TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSC
T ss_pred ------HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCC
Confidence 1233343 9999999999999999885 467887642 22339999999999 999999999999999
Q ss_pred cchhHHHHHHHHcCCCccCCCCchHHHHHHHHHHHHHhCCccceeCCCcceEeechHHHHHHH
Q 043181 159 FEEEELILLRMAQGFLRHENSEKPVEQLGHQYSGELQSRSHFRQSSSNVSRFAMHDFINDLAH 221 (348)
Q Consensus 159 i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~mh~li~~~~~ 221 (348)
|+.+.++.+|+++| ++.+..++++|+++||++.. +....|+|||++++++.
T Consensus 387 I~~elLa~LW~aeG-----------eedAe~~L~eLvdRSLLq~d-~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 387 IPTILLSLIWFDVI-----------KSDVMVVVNKLHKYSLVEKQ-PKESTISIPSIYLELKV 437 (1221)
T ss_dssp EEHHHHHHHHCSSC-----------SHHHHHHHHHHHTSSSSSBC-SSSSEEBCCCHHHHHHH
T ss_pred CCHHHHHHHhcCCC-----------HHHHHHHHHHHHhhCCEEEe-CCCCEEEehHHHHHHhc
Confidence 99999999998876 13578899999999999985 33568999999998653
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.92 E-value=4.5e-25 Score=231.24 Aligned_cols=204 Identities=20% Similarity=0.264 Sum_probs=152.6
Q ss_pred CCCCcHHHHHHHHhcchhh-hcCC-CeeEEEEcCCCCC--HHHHHHHHHHhccccccC----------------------
Q 043181 1 MGGVGKTTLAQLLCNNVKV-KNRF-HLETWVYLFEDFD--VFRITKTMLQSISTEAVR---------------------- 54 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~~~~~~--~~~l~~~il~~l~~~~~~---------------------- 54 (348)
||||||||||+++|++.+. +.+| +.+.|+++++..+ ....+..++..+......
T Consensus 155 ~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 234 (1249)
T 3sfz_A 155 MAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRK 234 (1249)
T ss_dssp STTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSS
T ss_pred CCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhcc
Confidence 8999999999999997644 5556 4566999988543 333445555544322110
Q ss_pred ----------CCChhhh-----------------------------hcCC-CChHHHHHHHHHhhcCCCCCCcChhHHHH
Q 043181 55 ----------DNDLNLL-----------------------------QLKK-WSDDDCLCVFTQRSSRRTDFNMHMHLKEI 94 (348)
Q Consensus 55 ----------~~~~~~l-----------------------------~~~~-l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~ 94 (348)
.++.+++ ...+ |+.++|++||...++... +.+.+.
T Consensus 235 ~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~ 309 (1249)
T 3sfz_A 235 HPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAE 309 (1249)
T ss_dssp SCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTH
T ss_pred CCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHH
Confidence 0000000 0113 999999999999885432 234567
Q ss_pred HHHHHHHcCCCchhHHHHHhhhcCCCCchhHHHHhcCc-----------------------ccccccCchHHHHHHhHhc
Q 043181 95 GEKIVKKCNGLPLASEILGGLLHGKVDCIDWEDVLNSK-----------------------AISCHYLLPHLKRCFSYCS 151 (348)
Q Consensus 95 ~~~i~~~c~GlPLal~~ig~~L~~~~~~~~w~~~l~~~-----------------------~~s~~~L~~~~k~~fl~~~ 151 (348)
+++|+++|+|+||||+++|+.|+.+. ..|+..++.+ .+||+.|+++.|.||+|||
T Consensus 310 ~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~ 387 (1249)
T 3sfz_A 310 AHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLS 387 (1249)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGG
T ss_pred HHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhC
Confidence 99999999999999999999999874 3566555432 1899999999999999999
Q ss_pred cCCCCCccchhHHHHHHHHcCCCccCCCCchHHHHHHHHHHHHHhCCccceeC-CCcceEeechHHHHHHHhh
Q 043181 152 IFPEDCKFEEEELILLRMAQGFLRHENSEKPVEQLGHQYSGELQSRSHFRQSS-SNVSRFAMHDFINDLAHKY 223 (348)
Q Consensus 152 ~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~-~~~~~~~mh~li~~~~~~~ 223 (348)
+||+++.|+...++.+|.++ ++.+++++.+|+++||++... +....|+||+++|+++++.
T Consensus 388 ~f~~~~~i~~~~~~~~~~~~------------~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~ 448 (1249)
T 3sfz_A 388 ILQKDVKVPTKVLCVLWDLE------------TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEK 448 (1249)
T ss_dssp GSCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHH
T ss_pred ccCCCCeeCHHHHHHHhCCC------------HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhh
Confidence 99999999999999999554 366788999999999999764 3334699999999999954
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.89 E-value=1e-22 Score=197.78 Aligned_cols=203 Identities=20% Similarity=0.289 Sum_probs=148.5
Q ss_pred CCCCcHHHHHHHHhcchhh-hcCCC-eeEEEEcCCCCCHHHHHHHH---HHhccccc----cCCCC--------------
Q 043181 1 MGGVGKTTLAQLLCNNVKV-KNRFH-LETWVYLFEDFDVFRITKTM---LQSISTEA----VRDND-------------- 57 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~-~~~F~-~~~wv~~~~~~~~~~l~~~i---l~~l~~~~----~~~~~-------------- 57 (348)
||||||||||+++|++.++ +.+|+ +++|++++.. +...+...+ +..++... ....+
T Consensus 155 ~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~ 233 (591)
T 1z6t_A 155 MAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR 233 (591)
T ss_dssp CTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc
Confidence 7999999999999998766 88995 7999998764 222222222 22221000 00000
Q ss_pred --------------hhh---------------------------hhc---CCCChHHHHHHHHHhhcCCCCCCcChhHHH
Q 043181 58 --------------LNL---------------------------LQL---KKWSDDDCLCVFTQRSSRRTDFNMHMHLKE 93 (348)
Q Consensus 58 --------------~~~---------------------------l~~---~~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~ 93 (348)
.+. +.. .+|+.++|++||...++... ....+
T Consensus 234 ~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~ 308 (591)
T 1z6t_A 234 KHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPE 308 (591)
T ss_dssp TCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCT
T ss_pred CCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccH
Confidence 000 000 16999999999999986422 12235
Q ss_pred HHHHHHHHcCCCchhHHHHHhhhcCCCCchhHHHHhcCc-----------------------ccccccCchHHHHHHhHh
Q 043181 94 IGEKIVKKCNGLPLASEILGGLLHGKVDCIDWEDVLNSK-----------------------AISCHYLLPHLKRCFSYC 150 (348)
Q Consensus 94 ~~~~i~~~c~GlPLal~~ig~~L~~~~~~~~w~~~l~~~-----------------------~~s~~~L~~~~k~~fl~~ 150 (348)
.+.+|+++|+|+||||+.+|+.++.+. ..|..+++.+ ..||+.|+++.|.||+++
T Consensus 309 ~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~l 386 (591)
T 1z6t_A 309 QAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDL 386 (591)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHc
Confidence 789999999999999999999998874 3576554321 178999999999999999
Q ss_pred ccCCCCCccchhHHHHHHHHcCCCccCCCCchHHHHHHHHHHHHHhCCccceeC-CCcceEeechHHHHHHHhh
Q 043181 151 SIFPEDCKFEEEELILLRMAQGFLRHENSEKPVEQLGHQYSGELQSRSHFRQSS-SNVSRFAMHDFINDLAHKY 223 (348)
Q Consensus 151 ~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~-~~~~~~~mh~li~~~~~~~ 223 (348)
|+||+++.++...+...|.++ ...+.+++.+|+++||++... +....|+||+++++++++.
T Consensus 387 a~f~~~~~i~~~~l~~l~~~~------------~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 387 SILQKDVKVPTKVLCILWDME------------TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp GGCCTTCCEEHHHHHHHHTCC------------HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred cccCCCCccCHHHHHHHhccC------------HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence 999999999999999888542 245678899999999998653 3445799999999999865
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.75 E-value=6.5e-09 Score=93.00 Aligned_cols=75 Identities=28% Similarity=0.317 Sum_probs=58.9
Q ss_pred eCCccccCCCCccEEecCCCCC-ccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQV-ETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~-~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+|..++.+++|++|++++|.+ ..+|..++.+++|+.|++++|..++.+|.+++++++|++|++++|..++.+|.
T Consensus 220 ~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~ 295 (328)
T 4fcg_A 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPS 295 (328)
T ss_dssp CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCG
T ss_pred cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccH
Confidence 5667777888888888888764 45777788888888888888777888888888888888888888877777774
No 6
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.75 E-value=1.7e-08 Score=90.35 Aligned_cols=67 Identities=25% Similarity=0.300 Sum_probs=41.0
Q ss_pred eCCccccCCCCccEEecCCCC-CccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQ-VETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~-~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
.+|..++.+++|++|++++|. ...+|..++.+++|+.|++++|+.++.+|.++++|++|+.+++..+
T Consensus 244 ~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 244 NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 455556666666666666654 3346666666666666666666666666666666666666665544
No 7
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.73 E-value=4.2e-08 Score=80.93 Aligned_cols=110 Identities=12% Similarity=0.185 Sum_probs=76.7
Q ss_pred ccccccCccccceeeeccCcccccccccchhHHHHhhhhccccee-------eCCccccCCCCccEEecCCCCCcc-Cch
Q 043181 228 RFEAIDGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY-------ELPSEIGDLKILRYLNFSDAQVET-SPE 299 (348)
Q Consensus 228 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~p~~~~~l~~L~~l~l~~~~~~~-lp~ 299 (348)
.++.+..+++|+.+...++.. .. .. .+ ..+++++.|.+ ..|..++.+++|++|++++|.++. .|.
T Consensus 58 ~l~~l~~l~~L~~L~l~~n~~-~~---~~--~l-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~ 130 (197)
T 4ezg_A 58 DLTGIEYAHNIKDLTINNIHA-TN---YN--PI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130 (197)
T ss_dssp CCTTGGGCTTCSEEEEESCCC-SC---CG--GG-TTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHH
T ss_pred ChHHHhcCCCCCEEEccCCCC-Cc---ch--hh-hcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHH
Confidence 344566677788777766532 11 10 11 11344555544 257778888999999999988875 677
Q ss_pred hhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 300 SVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 300 ~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.++.+++|+.|++++|..+..+| .+.++++|++|++++| .+..+|
T Consensus 131 ~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~ 175 (197)
T 4ezg_A 131 KINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYR 175 (197)
T ss_dssp HHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCT
T ss_pred HHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChH
Confidence 78888999999999865588887 5888888999999888 565554
No 8
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.67 E-value=1.5e-08 Score=100.23 Aligned_cols=103 Identities=21% Similarity=0.207 Sum_probs=79.1
Q ss_pred ccCccccceeeeccCcccccccccchhHHHHhhhhccccee------eCCccccCCCCccEEecCCCCCccCchhhhccC
Q 043181 232 IDGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY------ELPSEIGDLKILRYLNFSDAQVETSPESVCKLH 305 (348)
Q Consensus 232 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~ 305 (348)
+..+..|+.|.+.++... .+..... .+.+++.|.+ .+|..++.+.+|++|+|++|.++.+|.+++.|+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~----~l~~~~~--~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF----NISANIF--KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCF 293 (727)
T ss_dssp --CCCCCCEEECTTSCCS----CCCGGGG--GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGT
T ss_pred hccCCCCcEEECCCCCCC----CCChhhc--CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCC
Confidence 445667777766655431 1222211 2344555554 688899999999999999999999999999999
Q ss_pred CCCEeeccCCCccchhHHHhcccccCcEeeccCCCC
Q 043181 306 NLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFS 341 (348)
Q Consensus 306 ~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~ 341 (348)
+|++|+|++ +.+..+|.+|++|++|++|+|++|..
T Consensus 294 ~L~~L~L~~-N~l~~lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 294 QLKYFYFFD-NMVTTLPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp TCSEEECCS-SCCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred CCCEEECCC-CCCCccChhhhcCCCccEEeCCCCcc
Confidence 999999999 57899999999999999999999943
No 9
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.62 E-value=5.8e-08 Score=78.50 Aligned_cols=69 Identities=22% Similarity=0.218 Sum_probs=49.6
Q ss_pred ccccCCCCccEEecCCCCCccCchhh-hccCCCCEeeccCCCccchhHH--HhcccccCcEeeccCCCCCCCCC
Q 043181 276 SEIGDLKILRYLNFSDAQVETSPESV-CKLHNLETLKLQNCNRLQKLFA--DIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~lp~~~-~~l~~L~~L~l~~c~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
..++.+++|++|++++|.++.+|+.+ +.+++|++|++++ +.+..+|. .++.+++|++|++++| .+..+|
T Consensus 58 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~ 129 (176)
T 1a9n_A 58 DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKK 129 (176)
T ss_dssp CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGST
T ss_pred cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcH
Confidence 45677777777777777777777655 7777777777777 46677776 6777777777777777 455554
No 10
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.59 E-value=7.3e-08 Score=81.51 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=30.3
Q ss_pred ccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCC
Q 043181 278 IGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVT 339 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~ 339 (348)
+..+++|++|++++|.++.+|..+..+++|++|++++ +.+..+|. .+..+++|+.|++++|
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred hCcchhhCeEeccCCcccccCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCC
Confidence 3445555555555555555555555555555555554 34444443 2444555555555544
No 11
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.58 E-value=4e-08 Score=97.21 Aligned_cols=73 Identities=25% Similarity=0.340 Sum_probs=68.3
Q ss_pred eCCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+|..+..+.+|++|+|++|.++.+|+.++.|++|++|+|++ +.+..+|.++++|++|++|+|++| .++.+|.
T Consensus 238 ~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~ 310 (727)
T 4b8c_D 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDN-MVTTLPW 310 (727)
T ss_dssp CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSSGGGGTTCSEEECCSS-CCCCCCS
T ss_pred CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChhhcCCCCCCEEECCCC-CCCccCh
Confidence 688888999999999999999999999999999999999999 578899999999999999999999 7888885
No 12
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.58 E-value=8.8e-08 Score=76.70 Aligned_cols=106 Identities=23% Similarity=0.174 Sum_probs=73.1
Q ss_pred cCccccceeeeccCcccccccccchhHHHHhhhhccccee------e-CCccccCCCCccEEecCCCCCccCc--hhhhc
Q 043181 233 DGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY------E-LPSEIGDLKILRYLNFSDAQVETSP--ESVCK 303 (348)
Q Consensus 233 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~-~p~~~~~l~~L~~l~l~~~~~~~lp--~~~~~ 303 (348)
..+++|+.+....+.... ... + ..+.+++.|.+ . +|..+..+++|++|++++|.++.+| ..++.
T Consensus 46 ~~l~~L~~L~l~~n~l~~-~~~-----~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~ 118 (168)
T 2ell_A 46 AEFVNLEFLSLINVGLIS-VSN-----L-PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKK 118 (168)
T ss_dssp GGGGGCCEEEEESSCCCC-CSS-----C-CCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSS
T ss_pred HhCCCCCEEeCcCCCCCC-hhh-----h-ccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhc
Confidence 556677777666554211 000 0 01233444444 2 5666667889999999999888876 67888
Q ss_pred cCCCCEeeccCCCccchhHH----HhcccccCcEeeccCCCCCCCCCC
Q 043181 304 LHNLETLKLQNCNRLQKLFA----DIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 304 l~~L~~L~l~~c~~l~~lp~----~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
+++|+.|++++ +.+..+|. .+..+++|++|++++| ....+|.
T Consensus 119 l~~L~~L~l~~-N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 119 LECLKSLDLFN-CEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CSCCCEEECCS-SGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred CCCCCEEEeeC-CcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 89999999988 57777776 6888889999999888 6666663
No 13
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.54 E-value=9.6e-08 Score=91.70 Aligned_cols=72 Identities=32% Similarity=0.342 Sum_probs=51.5
Q ss_pred eCCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchh--HHHhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKL--FADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~l--p~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+|..++.+++|++|++++|.++.+| .++.+++|+.|+|++ +.+..+ |..++.|++|+.|++++| .+..+|+
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~-N~l~~~~~p~~l~~l~~L~~L~L~~N-~l~~~~~ 550 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCN-NRLQQSAAIQPLVSCPRLVLLNLQGN-SLCQEEG 550 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS-SCCCSSSTTGGGGGCTTCCEEECTTS-GGGGSSS
T ss_pred ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC-CCCCCCCCcHHHhcCCCCCEEEecCC-cCCCCcc
Confidence 56777777777777777777777776 677777777777777 466666 677777777777777777 5555543
No 14
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.54 E-value=1.1e-07 Score=76.90 Aligned_cols=70 Identities=26% Similarity=0.385 Sum_probs=61.2
Q ss_pred CCccccCCCCccEEecCCCCCccCchhh-hccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPESV-CKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESL 345 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~~~-~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~l 345 (348)
.|..+..+++|++|++++|.++.+|+.+ ..+++|++|+|++ +.+..+|++ +..+++|++|++++| .+.-.
T Consensus 49 ~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~ 120 (174)
T 2r9u_A 49 EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNN-PWDCE 120 (174)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS-CBCTT
T ss_pred CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC-CccceeCHHHhccccCCCEEEeCCC-Ccccc
Confidence 3667899999999999999999998874 8999999999999 789999986 889999999999999 44433
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.52 E-value=1.6e-07 Score=80.42 Aligned_cols=61 Identities=28% Similarity=0.395 Sum_probs=30.4
Q ss_pred ccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCC
Q 043181 278 IGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVT 339 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~ 339 (348)
+..+++|++|++++|.++.+|+. +..+++|+.|++++ +.+..+|+ .++.+++|++|++++|
T Consensus 103 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N 165 (251)
T 3m19_A 103 FDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTN 165 (251)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCC
Confidence 44555555555555555554443 24455555555554 34444444 2445555555555555
No 16
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.52 E-value=1.4e-07 Score=73.83 Aligned_cols=70 Identities=29% Similarity=0.392 Sum_probs=56.6
Q ss_pred ccccCCCCccEEecCCCCCcc-CchhhhccCCCCEeeccCCCccchhH--HHhcccccCcEeeccCCCCCCCCCC
Q 043181 276 SEIGDLKILRYLNFSDAQVET-SPESVCKLHNLETLKLQNCNRLQKLF--ADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~-lp~~~~~l~~L~~L~l~~c~~l~~lp--~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
..++.+++|++|++++|.++. +|..++.+++|++|++++ +.+..+| ..++.+++|++|++++| .+..+|+
T Consensus 58 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 130 (149)
T 2je0_A 58 ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLND 130 (149)
T ss_dssp TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTT-SCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCC-CcCCChHHHHHHhhCCCCCEEeCcCC-cccchHH
Confidence 567788889999999998887 777777789999999988 4677765 67888889999999888 6666654
No 17
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.51 E-value=1.3e-07 Score=77.81 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=49.4
Q ss_pred CccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCC
Q 043181 275 PSEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTF 340 (348)
Q Consensus 275 p~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~ 340 (348)
+..+..+.+|++|++++|.++.+|+ .++.+++|+.|+|++ +.+..+|.. +..+++|+.|++++|+
T Consensus 71 ~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 71 NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred HhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence 3557788888888888888887664 577888888888887 577777764 6778888888887773
No 18
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.46 E-value=2.8e-07 Score=73.76 Aligned_cols=81 Identities=25% Similarity=0.345 Sum_probs=67.1
Q ss_pred hhhccccee------eCCccccCCCCccEEecCCCCCcc-CchhhhccCCCCEeeccCCCccchhH--HHhcccccCcEe
Q 043181 264 SLKLQCFRY------ELPSEIGDLKILRYLNFSDAQVET-SPESVCKLHNLETLKLQNCNRLQKLF--ADIGNLNNLHHL 334 (348)
Q Consensus 264 ~~~~~~l~~------~~p~~~~~l~~L~~l~l~~~~~~~-lp~~~~~l~~L~~L~l~~c~~l~~lp--~~i~~l~~L~~L 334 (348)
+.+++.|.+ .+ ..++.+++|++|++++|.+.. +|..+..+++|++|++++ +.+..+| ..+..+++|++|
T Consensus 48 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 48 FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG-NKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp GGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBS-SSCCSSGGGGGGSSCSCCCEE
T ss_pred CCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccC-CccCcchhHHHHhcCCCCCEE
Confidence 445555555 33 678899999999999999988 777778899999999999 5788887 689999999999
Q ss_pred eccCCCCCCCCCC
Q 043181 335 DNFVTFSLESLES 347 (348)
Q Consensus 335 ~l~~~~~l~~lp~ 347 (348)
++++| .+..+|.
T Consensus 126 ~l~~N-~l~~~~~ 137 (168)
T 2ell_A 126 DLFNC-EVTNLND 137 (168)
T ss_dssp ECCSS-GGGTSTT
T ss_pred EeeCC-cCcchHH
Confidence 99999 6666654
No 19
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.45 E-value=2.8e-07 Score=77.39 Aligned_cols=70 Identities=24% Similarity=0.389 Sum_probs=39.5
Q ss_pred CccccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchh-HHHhcccccCcEeeccCCCCCCCCC
Q 043181 275 PSEIGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKL-FADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 275 p~~~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
|..+..+++|++|++++|.++.+|+. +..+++|+.|++++ +.+..+ |..+..+++|++|++++| .+..+|
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 144 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDN-KLQTIA 144 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred HHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCC-cCCEEC
Confidence 45556666666666666666665554 35566666666665 344444 334555666666666665 444443
No 20
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.44 E-value=2.5e-07 Score=74.64 Aligned_cols=71 Identities=24% Similarity=0.315 Sum_probs=61.4
Q ss_pred eCCccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+|..+. .+|++|++++|.++.+ |..++.+++|+.|+|++ +.+..+|.. +.++++|++|++++| .+..+|+
T Consensus 26 ~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~ 98 (174)
T 2r9u_A 26 SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPR 98 (174)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCCcchhhEEECCCC-ccceeCH
Confidence 4666554 8899999999999987 56789999999999999 689999987 489999999999999 7777775
No 21
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.43 E-value=3.1e-07 Score=77.60 Aligned_cols=73 Identities=27% Similarity=0.360 Sum_probs=64.1
Q ss_pred eCC-ccccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELP-SEIGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p-~~~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+| ..+..+++|++|++++|.++.+|+. +..+++|+.|++++ +.+..+|..+..+++|++|++++| .+..+|+
T Consensus 78 ~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~ 152 (229)
T 3e6j_A 78 ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPH 152 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCT
T ss_pred CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCH
Confidence 344 4468999999999999999998776 58999999999999 689999999999999999999999 7777763
No 22
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.43 E-value=3.7e-07 Score=79.09 Aligned_cols=67 Identities=25% Similarity=0.403 Sum_probs=36.7
Q ss_pred ccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCCC
Q 043181 278 IGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp 346 (348)
+..+++|++|++++|.++.+|+. ++.+++|+.|++++ +.+..+|.. +.++++|++|++++| .+..+|
T Consensus 129 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 197 (270)
T 2o6q_A 129 FDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTELKTLKLDNN-QLKRVP 197 (270)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred hCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC-CcCcEeChhHhccCCCcCEEECCCC-cCCcCC
Confidence 45556666666666655555543 45556666666655 345555442 455556666666555 444444
No 23
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.42 E-value=4.5e-07 Score=75.21 Aligned_cols=109 Identities=19% Similarity=0.228 Sum_probs=71.8
Q ss_pred ccCccccceeeeccCcccccccccchhHHHHhhhhccccee------eCCc-cccCCCCccEEecCCCCCccCchh-hhc
Q 043181 232 IDGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY------ELPS-EIGDLKILRYLNFSDAQVETSPES-VCK 303 (348)
Q Consensus 232 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~p~-~~~~l~~L~~l~l~~~~~~~lp~~-~~~ 303 (348)
+..+++|+.+...++... ......+ ..+.+++.|.+ .+|. .+..+++|++|++++|.++.+|+. +..
T Consensus 48 ~~~l~~L~~L~l~~n~l~----~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 122 (208)
T 2o6s_A 48 FDELTSLTQLYLGGNKLQ----SLPNGVF-NKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK 122 (208)
T ss_dssp TTTCTTCSEEECCSSCCC----CCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred hcccccCcEEECCCCccC----ccChhhc-CCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhcc
Confidence 345677777766554321 1111111 11334444444 3443 467888999999999988887765 688
Q ss_pred cCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCCC
Q 043181 304 LHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 304 l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp 346 (348)
+++|+.|++++ +.+..+|.. +..+++|++|++++|......|
T Consensus 123 l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 165 (208)
T 2o6s_A 123 LTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165 (208)
T ss_dssp CTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred CCcCCEEECCC-CccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence 89999999988 567777765 6788899999998886555554
No 24
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.42 E-value=4.2e-07 Score=74.83 Aligned_cols=108 Identities=13% Similarity=0.155 Sum_probs=79.6
Q ss_pred cCccccceeeeccCcccccccccchhHHHHhhhhccccee-----eCCccccCCCCccEEecCCCCCcc-CchhhhccCC
Q 043181 233 DGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY-----ELPSEIGDLKILRYLNFSDAQVET-SPESVCKLHN 306 (348)
Q Consensus 233 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~p~~~~~l~~L~~l~l~~~~~~~-lp~~~~~l~~ 306 (348)
.++++++.+...++... .+. . ...+.+++.|.+ ..++.+..+++|++|++++|.++. .|..++.+++
T Consensus 41 ~~l~~L~~L~l~~n~i~----~l~--~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 113 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT----DLT--G-IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTS 113 (197)
T ss_dssp HHHHTCCEEEEESSCCS----CCT--T-GGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTT
T ss_pred hhcCCccEEeccCCCcc----ChH--H-HhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCC
Confidence 45667777766554431 111 0 112445665555 445688999999999999999985 7888999999
Q ss_pred CCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 307 LETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 307 L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
|++|++++|.-....|..++.+++|++|++++|..+..+|.
T Consensus 114 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~ 154 (197)
T 4ezg_A 114 LTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154 (197)
T ss_dssp CCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG
T ss_pred CCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh
Confidence 99999999654445788899999999999999954766653
No 25
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.41 E-value=3.1e-07 Score=73.82 Aligned_cols=66 Identities=26% Similarity=0.352 Sum_probs=58.5
Q ss_pred CCccccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTF 340 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~ 340 (348)
.|..+..+.+|++|++++|.++.+|+. +..+++|++|+|++ +.+..+|+. +.++++|++|++++|+
T Consensus 46 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 46 EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence 366789999999999999999998876 48999999999999 688899875 8899999999999984
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.41 E-value=5.7e-07 Score=78.02 Aligned_cols=61 Identities=31% Similarity=0.453 Sum_probs=25.3
Q ss_pred ccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCC
Q 043181 278 IGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVT 339 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~ 339 (348)
++.+++|++|++++|.++.+|+. ++.+++|+.|++++| .+..+|+. ++.+++|++|++++|
T Consensus 129 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred hccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC
Confidence 34444444444444444443332 234444444444442 33333332 234444444444444
No 27
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.40 E-value=6.2e-07 Score=77.78 Aligned_cols=112 Identities=26% Similarity=0.317 Sum_probs=80.6
Q ss_pred cccccccCccccceeeeccCcccccccccchhHHHHhhhhccccee------eCC-ccccCCCCccEEecCCCCCccCch
Q 043181 227 KRFEAIDGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY------ELP-SEIGDLKILRYLNFSDAQVETSPE 299 (348)
Q Consensus 227 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~p-~~~~~l~~L~~l~l~~~~~~~lp~ 299 (348)
..+..+..+++|+.+...++... ... .+ ..+.+++.|.+ .+| ..++.+++|++|++++|.++.+|+
T Consensus 54 ~~~~~l~~l~~L~~L~l~~n~l~----~~~--~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 126 (272)
T 3rfs_A 54 KSVQGIQYLPNVRYLALGGNKLH----DIS--AL-KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPD 126 (272)
T ss_dssp CCCTTGGGCTTCCEEECTTSCCC----CCG--GG-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred ccccccccCCCCcEEECCCCCCC----Cch--hh-cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCH
Confidence 34555667788888877665431 111 01 11344444444 333 447899999999999999998876
Q ss_pred h-hhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCCCC
Q 043181 300 S-VCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 300 ~-~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
. ++.+++|++|++++| .+..+|+. ++.+++|++|++++| .+..+|+
T Consensus 127 ~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~ 174 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPE 174 (272)
T ss_dssp TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred HHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCC-CcCccCH
Confidence 5 689999999999994 78888775 588999999999999 6666664
No 28
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.40 E-value=4.4e-07 Score=76.18 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=47.2
Q ss_pred ccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchh-HHHhcccccCcEeeccCCC
Q 043181 276 SEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKL-FADIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~l-p~~i~~l~~L~~L~l~~~~ 340 (348)
..+..+++|++|++++|.++.+ |..+..+++|+.|++++ +.+..+ |..+..+++|+.|++++|+
T Consensus 99 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEEecCcC
Confidence 3467778888888888887765 56677778888888887 466666 5667778888888887773
No 29
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.39 E-value=5.7e-07 Score=78.83 Aligned_cols=70 Identities=29% Similarity=0.333 Sum_probs=55.5
Q ss_pred ccccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchhHHHh-cccccCcEeeccCCCCCCCCCC
Q 043181 276 SEIGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKLFADI-GNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~i-~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
..+..+++|++|++++|.++.+|+. +..+++|+.|++++ +.+..+|.++ ..+++|++|++++| .+..+|.
T Consensus 118 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~ 189 (290)
T 1p9a_G 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQEN-SLYTIPK 189 (290)
T ss_dssp STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred HHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCC-cCCccCh
Confidence 5578888888888888888887765 47788888888888 5788888754 67888888888888 7777774
No 30
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.39 E-value=3.4e-07 Score=87.91 Aligned_cols=69 Identities=23% Similarity=0.326 Sum_probs=63.7
Q ss_pred eCCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESL 345 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~l 345 (348)
.+|. ++.+++|++|++++|.++.+|..++.+++|+.|+|++ +.+..+| ++++|++|+.|++++| .+..+
T Consensus 455 ~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~ 523 (567)
T 1dce_A 455 VLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCNN-RLQQS 523 (567)
T ss_dssp SCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCSS-CCCSS
T ss_pred CCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEECCCC-CCCCC
Confidence 5676 9999999999999999999999999999999999999 6888899 7999999999999999 67666
No 31
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.38 E-value=3.5e-07 Score=76.80 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=60.5
Q ss_pred CCccccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchh-HHHhcccccCcEeeccCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKL-FADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.+..+..+.+|++|++++|.++.+|+. ++.+++|++|++++ +.+..+ |..+..+++|++|++++| .+..++
T Consensus 73 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 145 (220)
T 2v70_A 73 EEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDN-QITTVA 145 (220)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTS-CCCCBC
T ss_pred CHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCC-cCCEEC
Confidence 345789999999999999999988765 88999999999999 567777 667899999999999999 666653
No 32
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.38 E-value=3.7e-07 Score=71.42 Aligned_cols=69 Identities=22% Similarity=0.287 Sum_probs=60.6
Q ss_pred CCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccch-hHHHhcccccCcEeeccCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQK-LFADIGNLNNLHHLDNFVTFSLESL 345 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~-lp~~i~~l~~L~~L~l~~~~~l~~l 345 (348)
+|..++.+++|++|++++|.++.+ +.++.+++|++|++++| .+.. +|..++.+++|++|++++| .+..+
T Consensus 34 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~ 103 (149)
T 2je0_A 34 LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHLNLSGN-KIKDL 103 (149)
T ss_dssp CCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEEECTTS-CCCSH
T ss_pred HHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEEECCCC-cCCCh
Confidence 677788999999999999999988 77999999999999994 5666 8988888999999999999 56554
No 33
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.37 E-value=6.4e-07 Score=74.30 Aligned_cols=73 Identities=33% Similarity=0.501 Sum_probs=61.1
Q ss_pred eCCc-cccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPS-EIGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~-~~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+|. .+..+++|++|++++|.++.+|+. ++.+++|+.|++++ +.+..+|.. +.++++|++|++++| .+..+|+
T Consensus 66 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 141 (208)
T 2o6s_A 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPD 141 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred ccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCC-ccceeCH
Confidence 3443 468899999999999999998876 58999999999998 578888875 688999999999999 6666654
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.37 E-value=3.8e-07 Score=81.36 Aligned_cols=72 Identities=18% Similarity=0.236 Sum_probs=59.7
Q ss_pred CCccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.|..+..+++|++|++++|.++.+|+ .+..+++|+.|++++ +.+..+|.++..+++|++|++++| .+..+|.
T Consensus 208 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~ 280 (330)
T 1xku_A 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-NKLVKVPGGLADHKYIQVVYLHNN-NISAIGS 280 (330)
T ss_dssp CTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS-SCCSSCCTTTTTCSSCCEEECCSS-CCCCCCT
T ss_pred CHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC-CcCccCChhhccCCCcCEEECCCC-cCCccCh
Confidence 46778888999999999998887654 788889999999998 578889988888999999999988 6776653
No 35
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.37 E-value=4.8e-07 Score=72.64 Aligned_cols=71 Identities=28% Similarity=0.362 Sum_probs=60.7
Q ss_pred eCCccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+|..+. .+|++|++++|.++.+ |..++.+++|++|+|++ +.+..+|+. +..+++|++|++++| .+..+|+
T Consensus 23 ~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~ 95 (170)
T 3g39_A 23 SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPR 95 (170)
T ss_dssp SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccCCCCCCEEECCCC-ccCEeCH
Confidence 3565553 7899999999999988 56689999999999999 689999986 489999999999999 7777764
No 36
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.36 E-value=1.2e-06 Score=76.86 Aligned_cols=63 Identities=21% Similarity=0.133 Sum_probs=43.6
Q ss_pred cccCCCCccEEecCCCCCccCchhh-hccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCC
Q 043181 277 EIGDLKILRYLNFSDAQVETSPESV-CKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~~~lp~~~-~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~ 340 (348)
.+..+++|+.|++++|.++.+|+.+ ..+++|+.|++++ +.+..+|.++..+.+|++|++++|+
T Consensus 143 ~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 143 LLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred hcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence 3566777777777777777776543 5677777777776 5677777777777777777777663
No 37
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.35 E-value=3.4e-07 Score=91.33 Aligned_cols=75 Identities=21% Similarity=0.297 Sum_probs=64.5
Q ss_pred eCCccccCCCCccEEecCCCCCc-cCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVE-TSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+|..++.++.|+.|++++|.++ .+|.+++.+++|+.|+|++|...+.+|..++++++|++|++++|...+.+|.
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~ 722 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCS
T ss_pred cCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCC
Confidence 67888999999999999999987 7899999999999999998766678899999999999999999866667764
No 38
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.35 E-value=7.3e-07 Score=77.21 Aligned_cols=109 Identities=21% Similarity=0.270 Sum_probs=76.5
Q ss_pred ccCccccceeeeccCcccccccccchhHHHHhhhhccccee------eCC-ccccCCCCccEEecCCCCCccCchh-hhc
Q 043181 232 IDGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY------ELP-SEIGDLKILRYLNFSDAQVETSPES-VCK 303 (348)
Q Consensus 232 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~p-~~~~~l~~L~~l~l~~~~~~~lp~~-~~~ 303 (348)
+..+++|+.+...++... .+....+ ..+.+++.|.+ .+| ..+..+++|++|++++|.++.+|+. ++.
T Consensus 57 ~~~l~~L~~L~l~~n~l~----~i~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 131 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQ----TLPAGIF-KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131 (270)
T ss_dssp SSSCTTCCEEECCSSCCS----CCCTTTT-SSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred hcCCCCCCEEECCCCccC----eeChhhh-cCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc
Confidence 556777887776654421 1111111 11334444444 344 4568899999999999999987654 689
Q ss_pred cCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCCCC
Q 043181 304 LHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 304 l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
+++|++|++++ +.+..+|.. ++.+++|++|++++| .+..+|+
T Consensus 132 l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~ 174 (270)
T 2o6q_A 132 LTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNN-QLKRVPE 174 (270)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred CcCCCEEECCC-CcCCccCHhHccCCcccceeEecCC-cCcEeCh
Confidence 99999999999 578888876 788999999999998 6666654
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.35 E-value=3.8e-07 Score=80.89 Aligned_cols=67 Identities=19% Similarity=0.267 Sum_probs=45.2
Q ss_pred eCCccccCCCCccEEecCCCCCc-cCchhhhccCCCCEeeccCCCccchhHHHhcccc-cCcEeeccCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVE-TSPESVCKLHNLETLKLQNCNRLQKLFADIGNLN-NLHHLDNFVT 339 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~-~L~~L~l~~~ 339 (348)
.+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.-...+|..++.++ +|++|++++|
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N 184 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN 184 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC
Confidence 45666777777777777777766 5666677777777777776433336676677666 6777777666
No 40
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.34 E-value=4.8e-07 Score=81.33 Aligned_cols=70 Identities=19% Similarity=0.195 Sum_probs=37.0
Q ss_pred CCccccCCCCccEEecCC-CCCccCc-hhhhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSD-AQVETSP-ESVCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~-~~~~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
+|. ++.+.+|+.|+|++ |.++.+| ..++.|++|+.|+|++ +.+..+|+ .+++|++|++|+|++| .+..+|
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~ 96 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHFTPRLSRLNLSFN-ALESLS 96 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGSCSCCCEEECCSS-CCSCCC
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcCCcCCCEEeCCCC-ccceeC
Confidence 444 55555555555553 5555544 3455555555555555 34444443 3455555555555555 444444
No 41
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.33 E-value=5e-07 Score=87.47 Aligned_cols=108 Identities=17% Similarity=0.161 Sum_probs=73.4
Q ss_pred ccCccccceeeeccCcccccccccchhHHHHhhhhccccee-------eCCccccCCCCccEEecCCCCCccCc-hhhhc
Q 043181 232 IDGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY-------ELPSEIGDLKILRYLNFSDAQVETSP-ESVCK 303 (348)
Q Consensus 232 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------~~p~~~~~l~~L~~l~l~~~~~~~lp-~~~~~ 303 (348)
+.++++|+.+...++... ......+ ..+.+++.|.+ ..|..++++++|++|++++|.+..+| ..+++
T Consensus 52 ~~~l~~L~~L~Ls~n~l~----~i~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 126 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIE----TIEDKAW-HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQ 126 (606)
T ss_dssp TTTCTTCCEEECTTCCCC----EECTTTT-TTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTT
T ss_pred ccCCccCcEEeCCCCccc----ccCHHHh-hchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCC
Confidence 456777777766654321 1111111 11233444443 34778889999999999999888776 67888
Q ss_pred cCCCCEeeccCCCccc--hhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 304 LHNLETLKLQNCNRLQ--KLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 304 l~~L~~L~l~~c~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
+++|++|++++| .+. .+|..++++++|++|++++| .+..+|
T Consensus 127 l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~ 169 (606)
T 3vq2_A 127 LITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYN-YIQTIT 169 (606)
T ss_dssp CTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSS-CCCEEC
T ss_pred CCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCC-cceecC
Confidence 999999999984 454 57888999999999999888 555443
No 42
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.33 E-value=7.1e-07 Score=80.76 Aligned_cols=106 Identities=17% Similarity=0.236 Sum_probs=71.1
Q ss_pred CccccceeeeccCcccccccccchhHHHHhhhhccccee------eC-CccccCCCCccEEecCCCCCccC-chhhhccC
Q 043181 234 GVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY------EL-PSEIGDLKILRYLNFSDAQVETS-PESVCKLH 305 (348)
Q Consensus 234 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~-p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~ 305 (348)
.+.+|+.|.+.++... ......+ ..+.+++.|.+ .+ +..+..+.+|++|++++|.+..+ |..+..++
T Consensus 62 ~l~~L~~L~L~~N~i~----~i~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 136 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLN----FISSEAF-VPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136 (361)
T ss_dssp CCTTCCEEECCSSCCC----EECTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred cccccCEEECCCCcCC----ccChhhc-cCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc
Confidence 5667777766554431 1111111 11334444444 33 44578889999999999988876 56788899
Q ss_pred CCCEeeccCCCccchhHHHh----cccccCcEeeccCCCCCCCCC
Q 043181 306 NLETLKLQNCNRLQKLFADI----GNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 306 ~L~~L~l~~c~~l~~lp~~i----~~l~~L~~L~l~~~~~l~~lp 346 (348)
+|+.|+|++ +.+..+|..+ ..+++|++|++++| .+..+|
T Consensus 137 ~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~ 179 (361)
T 2xot_A 137 QLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP 179 (361)
T ss_dssp TCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSS-CCCCCC
T ss_pred cCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccC
Confidence 999999998 6788888765 57888999999988 677766
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.33 E-value=7.9e-07 Score=82.68 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=47.1
Q ss_pred cccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCCCCCCCCCC
Q 043181 277 EIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+..+++|++|++++|.++.+|+ .+..+++|+.|++++|+.+..+|. .+.++++|++|++++| .+..+|.
T Consensus 131 ~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~ 202 (440)
T 3zyj_A 131 AFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN 202 (440)
T ss_dssp TSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC
T ss_pred HhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc
Confidence 46777777777777777776654 566677777777777666666665 3566666777766666 5555553
No 44
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.33 E-value=7e-07 Score=77.49 Aligned_cols=63 Identities=25% Similarity=0.332 Sum_probs=31.2
Q ss_pred ccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccch--hHHHhcccccCcEeeccCC
Q 043181 276 SEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQK--LFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~--lp~~i~~l~~L~~L~l~~~ 339 (348)
..+..+++|++|++++|.+..+++ .++.+++|+.|++++ +.+.. +|..++++++|++|++++|
T Consensus 94 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 94 GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcC-CccceecCchhhccCCCCCEEECCCC
Confidence 344555555555555555544433 345555555555554 23333 4445555555555555555
No 45
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.32 E-value=7.3e-07 Score=74.78 Aligned_cols=71 Identities=24% Similarity=0.346 Sum_probs=62.2
Q ss_pred CCccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.+..+..+++|++|++++|.++.+ |..+..+++|++|+|++ +.+..+|.+ +..+++|++|++++| .+..++
T Consensus 48 ~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~ 120 (220)
T 2v9t_B 48 PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNAN-KINCLR 120 (220)
T ss_dssp CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCC
T ss_pred CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-CcCCccCHhHccCCCCCCEEECCCC-CCCEeC
Confidence 345788999999999999999986 77899999999999999 689999987 578999999999999 666664
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.32 E-value=7.4e-07 Score=83.17 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=51.7
Q ss_pred ccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCCCC
Q 043181 276 SEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
..+..+++|++|++++|.++.+|+ .+..+++|+.|++++|+.+..+|.. +..+++|++|++++| .+..+|.
T Consensus 141 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~ 213 (452)
T 3zyi_A 141 GAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN 213 (452)
T ss_dssp TTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC
T ss_pred hhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc
Confidence 346778888888888888877665 5677778888888777777777763 667777777777777 5665553
No 47
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.31 E-value=9.8e-07 Score=71.19 Aligned_cols=68 Identities=24% Similarity=0.334 Sum_probs=54.6
Q ss_pred eCC-ccccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchhHHHh-cccccCcEeeccCCCC
Q 043181 273 ELP-SEIGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKLFADI-GNLNNLHHLDNFVTFS 341 (348)
Q Consensus 273 ~~p-~~~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~i-~~l~~L~~L~l~~~~~ 341 (348)
.+| ..+..+.+|++|++++|.++.+|+. ++.+++|+.|++++ +.+..+|..+ ..+++|++|++++|+.
T Consensus 66 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 66 SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcC-CcceEeCHHHhcCCcccCEEEecCCCe
Confidence 344 3468889999999999998888765 57889999999998 5788888764 7788999999988843
No 48
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.31 E-value=4.8e-07 Score=74.19 Aligned_cols=76 Identities=18% Similarity=0.241 Sum_probs=59.5
Q ss_pred hhhccccee-------eCCccccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchh-HHHhcccccCcEe
Q 043181 264 SLKLQCFRY-------ELPSEIGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKL-FADIGNLNNLHHL 334 (348)
Q Consensus 264 ~~~~~~l~~-------~~p~~~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~l-p~~i~~l~~L~~L 334 (348)
+.+++.|.+ ..|..+..+.+|++|++++|.++.+|+. ++.+++|++|++++ +.+..+ |..+..+++|++|
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEE
Confidence 344555544 3477888999999999999999887654 78899999999998 456555 6678889999999
Q ss_pred eccCCC
Q 043181 335 DNFVTF 340 (348)
Q Consensus 335 ~l~~~~ 340 (348)
++++|.
T Consensus 132 ~L~~N~ 137 (192)
T 1w8a_A 132 NLASNP 137 (192)
T ss_dssp ECTTCC
T ss_pred EeCCCC
Confidence 999884
No 49
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.31 E-value=9.6e-07 Score=71.23 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=59.4
Q ss_pred eCCccc-cCCCCccEEecCCCCCccCch--hhhccCCCCEeeccCCCccchhHHH----hcccccCcEeeccCCC
Q 043181 273 ELPSEI-GDLKILRYLNFSDAQVETSPE--SVCKLHNLETLKLQNCNRLQKLFAD----IGNLNNLHHLDNFVTF 340 (348)
Q Consensus 273 ~~p~~~-~~l~~L~~l~l~~~~~~~lp~--~~~~l~~L~~L~l~~c~~l~~lp~~----i~~l~~L~~L~l~~~~ 340 (348)
.+|+.+ +.+++|++|++++|.+..+|. .++.+++|+.|++++ +.+..+|.. ++.+++|+.|++++|.
T Consensus 78 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~-N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 78 RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR-NPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCS-SGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred ccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecC-CCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 456554 899999999999999999987 899999999999999 678899985 8999999999998873
No 50
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.29 E-value=1.4e-06 Score=79.57 Aligned_cols=68 Identities=18% Similarity=0.299 Sum_probs=43.0
Q ss_pred CccccCCCCccEEecCCCCCccCchhh-hccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCCCCCCC
Q 043181 275 PSEIGDLKILRYLNFSDAQVETSPESV-CKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVTFSLES 344 (348)
Q Consensus 275 p~~~~~l~~L~~l~l~~~~~~~lp~~~-~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~ 344 (348)
|..++.+++|++|++++|.++.+|+.+ +.+++|++|++++| .+..+|+ .++.+++|++|++++| .+..
T Consensus 110 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~ 179 (390)
T 3o6n_A 110 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN-RLTH 179 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSS-CCSB
T ss_pred HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCC-cCCc
Confidence 344666777777777777777666653 66777777777763 4444433 4666777777777766 4433
No 51
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.29 E-value=2.1e-06 Score=75.84 Aligned_cols=65 Identities=22% Similarity=0.321 Sum_probs=42.1
Q ss_pred ccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 278 IGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
+..+++|++|++++|.++.+|+ ++.+++|+.|++++ +.+..+|. +..+++|++|++++| .+..+|
T Consensus 125 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~ 189 (308)
T 1h6u_A 125 LAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGN-AQVSDLTP-LANLSKLTTLKADDN-KISDIS 189 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-CCCCCG
T ss_pred hcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccC-CcCCCChh-hcCCCCCCEEECCCC-ccCcCh
Confidence 5666666666666666666655 66666777777766 35666665 666777777777766 455444
No 52
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.28 E-value=1.1e-06 Score=87.65 Aligned_cols=75 Identities=24% Similarity=0.382 Sum_probs=58.5
Q ss_pred eCCccccCCCCccEEecCCCCCc-cCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVE-TSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+|..++.+++|++|++++|.+. .+|..++.+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|.
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 46777788888888888888876 6788888888888888888666667888888888888888888865556663
No 53
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.28 E-value=1.3e-06 Score=74.79 Aligned_cols=72 Identities=25% Similarity=0.324 Sum_probs=61.8
Q ss_pred CCccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.|..+..+++|++|++++|.++.+|+ .+..+++|++|++++ +.+..+|+. +..+++|++|++++| .+..+|+
T Consensus 75 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~ 148 (251)
T 3m19_A 75 SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPA 148 (251)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred CHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcCC-cCCccCH
Confidence 45568899999999999999998875 468999999999999 688888876 588999999999999 7777764
No 54
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.27 E-value=8.6e-07 Score=72.65 Aligned_cols=66 Identities=18% Similarity=0.334 Sum_probs=53.4
Q ss_pred ccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCC
Q 043181 278 IGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESL 345 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~l 345 (348)
++.+++|++|++++|.++.+ |..++.+++|+.|++++ +.+..+|+. +..+++|++|++++| .+..+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 117 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYDN-QISCV 117 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCSS-CCCEE
T ss_pred cccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCC-cCCee
Confidence 78888999999999988876 67788899999999988 567777664 778889999999888 44433
No 55
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.27 E-value=1.2e-06 Score=71.93 Aligned_cols=73 Identities=23% Similarity=0.348 Sum_probs=64.6
Q ss_pred eCCccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+|..+..+.+|++|++++|.++.+|+ .+..+++|+.|++++ +.+..+|+ .+..+++|++|++++| .+..+|+
T Consensus 45 ~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~ 119 (193)
T 2wfh_A 45 LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPE 119 (193)
T ss_dssp SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCT
T ss_pred hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC-CccCEeCHHHhCCCCCCCEEECCCC-CCCeeCh
Confidence 678889999999999999999998864 689999999999999 67888876 5889999999999999 7777764
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.27 E-value=4.9e-07 Score=87.69 Aligned_cols=68 Identities=21% Similarity=0.229 Sum_probs=55.8
Q ss_pred CccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCC
Q 043181 275 PSEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLES 344 (348)
Q Consensus 275 p~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~ 344 (348)
|..+.++++|++|+|++|+++.+|+ .++.+++|++|++++ +.+..+|+. +++|++|++|++++| .+..
T Consensus 93 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~ 162 (635)
T 4g8a_A 93 DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHN-LIQS 162 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSS-CCCC
T ss_pred hhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccC-cccc
Confidence 4568889999999999999988875 468899999999998 578888764 788999999999888 5544
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.25 E-value=1.5e-06 Score=75.76 Aligned_cols=61 Identities=26% Similarity=0.353 Sum_probs=26.5
Q ss_pred ccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchh-HHHhcccccCcEeeccCC
Q 043181 278 IGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKL-FADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~l-p~~i~~l~~L~~L~l~~~ 339 (348)
++.+++|++|++++|.++.+|+. +..+++|+.|++++| .+..+ |..+.++++|+.|++++|
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 211 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFAN 211 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS
T ss_pred hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCC
Confidence 34444444444444444444332 444444444444442 22222 334444444444444444
No 58
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.25 E-value=1e-06 Score=84.44 Aligned_cols=68 Identities=25% Similarity=0.318 Sum_probs=48.9
Q ss_pred CccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccc--hhHHHhcccccCcEeeccCCCCCCC
Q 043181 275 PSEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQ--KLFADIGNLNNLHHLDNFVTFSLES 344 (348)
Q Consensus 275 p~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~ 344 (348)
|..++.+.+|++|++++|.++.+|+ .++.+++|++|++++| .+. .+|..++++++|++|++++| .+..
T Consensus 93 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n-~l~~ 163 (570)
T 2z63_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSN-KIQS 163 (570)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTS-CCCE
T ss_pred HhhhcCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCC-ccce
Confidence 4567777888888888887777765 5777788888888774 444 36777777888888888777 4443
No 59
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.24 E-value=2.6e-06 Score=75.22 Aligned_cols=59 Identities=27% Similarity=0.417 Sum_probs=28.6
Q ss_pred ccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 278 IGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
++.+++|++|++++|.++.+|+ +..+++|+.|++++ +.+..+|. +..+++|++|++++|
T Consensus 147 l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 147 LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADD-NKISDISP-LASLPNLIEVHLKNN 205 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCCCGG-GGGCTTCCEEECTTS
T ss_pred ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCC-CccCcChh-hcCCCCCCEEEccCC
Confidence 4444555555555555544444 44455555555554 23444443 444445555555444
No 60
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.23 E-value=7.8e-07 Score=89.30 Aligned_cols=72 Identities=22% Similarity=0.309 Sum_probs=46.0
Q ss_pred eCCccccCCCCccEEecCCCC-Cc--cCchhhhccC-------CCCEeeccCCCccchhHH--HhcccccCcEeeccCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQ-VE--TSPESVCKLH-------NLETLKLQNCNRLQKLFA--DIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~-~~--~lp~~~~~l~-------~L~~L~l~~c~~l~~lp~--~i~~l~~L~~L~l~~~~ 340 (348)
.+|..++++++|++|++++|. ++ .+|..++.++ +|+.|++++ +.+..+|. .++++++|++|++++|
T Consensus 506 ~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L~~ip~~~~l~~L~~L~~L~Ls~N- 583 (876)
T 4ecn_A 506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNLEEFPASASLQKMVKLGLLDCVHN- 583 (876)
T ss_dssp SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCCCBCCCHHHHTTCTTCCEEECTTS-
T ss_pred cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-CcCCccCChhhhhcCCCCCEEECCCC-
Confidence 456666777777777777775 55 3666666555 666777666 34556666 6666666666666666
Q ss_pred CCCCCC
Q 043181 341 SLESLE 346 (348)
Q Consensus 341 ~l~~lp 346 (348)
.+..+|
T Consensus 584 ~l~~lp 589 (876)
T 4ecn_A 584 KVRHLE 589 (876)
T ss_dssp CCCBCC
T ss_pred Ccccch
Confidence 444555
No 61
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.23 E-value=3.5e-06 Score=73.81 Aligned_cols=59 Identities=20% Similarity=0.365 Sum_probs=26.0
Q ss_pred ccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 278 IGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
+..+++|++|++++|.++.+ +.++.+++|+.|++++ +.+..+|+ +..+++|++|++++|
T Consensus 130 l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 130 LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSKN 188 (291)
T ss_dssp GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCSS
T ss_pred hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccC-Cccccchh-hcCCCccCEEECCCC
Confidence 34444444444444444444 2344444444444444 23444433 444444444444444
No 62
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.23 E-value=1.6e-06 Score=84.46 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=54.6
Q ss_pred eCCcccc--CCCCccEEecCCCCCccCchhhhccCCCCEeecc------CCCccchhHHHhcccccCcEeeccCCCCCCC
Q 043181 273 ELPSEIG--DLKILRYLNFSDAQVETSPESVCKLHNLETLKLQ------NCNRLQKLFADIGNLNNLHHLDNFVTFSLES 344 (348)
Q Consensus 273 ~~p~~~~--~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~------~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~ 344 (348)
.+|..+. .+++|++|++++|.++.+|..++.+++|+.|+++ ++...+.+|.+++++++|++|++++| .++.
T Consensus 502 ~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ 580 (636)
T 4eco_A 502 KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRK 580 (636)
T ss_dssp BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCB
T ss_pred ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCc
Confidence 5666665 7777888888888777777777788888888774 33346677777888888888888888 5577
Q ss_pred CCC
Q 043181 345 LES 347 (348)
Q Consensus 345 lp~ 347 (348)
+|.
T Consensus 581 ip~ 583 (636)
T 4eco_A 581 VNE 583 (636)
T ss_dssp CCS
T ss_pred cCH
Confidence 764
No 63
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=1.6e-06 Score=87.12 Aligned_cols=74 Identities=14% Similarity=0.176 Sum_probs=52.9
Q ss_pred eCCcccc--CCCCccEEecCCCCCccCchhhhccCCCCEeeccC------CCccchhHHHhcccccCcEeeccCCCCCCC
Q 043181 273 ELPSEIG--DLKILRYLNFSDAQVETSPESVCKLHNLETLKLQN------CNRLQKLFADIGNLNNLHHLDNFVTFSLES 344 (348)
Q Consensus 273 ~~p~~~~--~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~------c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~ 344 (348)
.+|..+. .+++|+.|++++|.++.+|..++.+++|+.|++++ |.....+|..++++++|+.|++++| .++.
T Consensus 742 ~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~ 820 (876)
T 4ecn_A 742 SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRK 820 (876)
T ss_dssp CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCB
T ss_pred cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCc
Confidence 4666665 77777777777777777777777777777777755 3445677777777777888888777 5577
Q ss_pred CCC
Q 043181 345 LES 347 (348)
Q Consensus 345 lp~ 347 (348)
+|.
T Consensus 821 Ip~ 823 (876)
T 4ecn_A 821 VDE 823 (876)
T ss_dssp CCS
T ss_pred cCH
Confidence 764
No 64
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.22 E-value=2.2e-06 Score=82.93 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=47.0
Q ss_pred CccccCCCCccEEecCCCCCccCchhh-hccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCCCCCCCC
Q 043181 275 PSEIGDLKILRYLNFSDAQVETSPESV-CKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVTFSLESL 345 (348)
Q Consensus 275 p~~~~~l~~L~~l~l~~~~~~~lp~~~-~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~l 345 (348)
|..++.+++|++|++++|.++.+|+.+ +.+++|++|++++| .+..+|+ .++++++|++|++++| .+..+
T Consensus 116 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~ 186 (597)
T 3oja_B 116 PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN-RLTHV 186 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTS-CCSBC
T ss_pred HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCC-CCCCc
Confidence 344577777777777777777777664 77777777777774 4444443 5777777777777777 44443
No 65
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.22 E-value=3.8e-06 Score=73.57 Aligned_cols=108 Identities=17% Similarity=0.223 Sum_probs=77.9
Q ss_pred ccccccCccccceeeeccCcccccccccchhHHHHhhhhccccee-----eCCccccCCCCccEEecCCCCCccCchhhh
Q 043181 228 RFEAIDGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY-----ELPSEIGDLKILRYLNFSDAQVETSPESVC 302 (348)
Q Consensus 228 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~ 302 (348)
.++.+..+++|+.+...++... .... ...+.+++.|.+ .-++.+..+++|++|++++|.++.+| .+.
T Consensus 60 ~~~~~~~l~~L~~L~L~~n~l~----~~~~---l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~~-~l~ 131 (291)
T 1h6t_A 60 SVQGIQYLPNVTKLFLNGNKLT----DIKP---LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN-GLV 131 (291)
T ss_dssp CCTTGGGCTTCCEEECCSSCCC----CCGG---GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG-GGG
T ss_pred cChhHhcCCCCCEEEccCCccC----CCcc---cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCCh-hhc
Confidence 3445666778888877665431 1111 112344444444 22345889999999999999999884 589
Q ss_pred ccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 303 KLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 303 ~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.+++|+.|++++ +.+..++ .++.+++|++|++++| .+..+|
T Consensus 132 ~l~~L~~L~l~~-n~l~~~~-~l~~l~~L~~L~L~~N-~l~~~~ 172 (291)
T 1h6t_A 132 HLPQLESLYLGN-NKITDIT-VLSRLTKLDTLSLEDN-QISDIV 172 (291)
T ss_dssp GCTTCCEEECCS-SCCCCCG-GGGGCTTCSEEECCSS-CCCCCG
T ss_pred CCCCCCEEEccC-CcCCcch-hhccCCCCCEEEccCC-ccccch
Confidence 999999999998 5788884 6899999999999999 666665
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.22 E-value=1.6e-06 Score=75.59 Aligned_cols=70 Identities=24% Similarity=0.351 Sum_probs=56.5
Q ss_pred CCccccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESL 345 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~l 345 (348)
.|..+..+++|++|++++|.++.+|+. ++.+++|+.|++++ +.+..+|.. +..+++|++|++++| .+..+
T Consensus 121 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~ 192 (285)
T 1ozn_A 121 GPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN-RVAHV 192 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEE
T ss_pred CHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCccccCEEECCCC-ccccc
Confidence 356678899999999999998887764 78899999999998 577788764 788899999999988 44433
No 67
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.21 E-value=7.6e-07 Score=78.90 Aligned_cols=74 Identities=22% Similarity=0.264 Sum_probs=64.0
Q ss_pred eCCccccCCCCccEEecCCCCCc-cCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVE-TSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.+|..++.+++|++|++++|.++ .+|..++.+++|++|++++|.-...+|..++++++|++|++++|...+.+|
T Consensus 92 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCC
Confidence 47888999999999999999998 799999999999999999954444899999999999999999994333555
No 68
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.20 E-value=1.1e-06 Score=79.05 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=36.8
Q ss_pred ccCCCCccEEecCCCCCccCch--hhhccCCCCEeeccCCCccchhH-HHhcccccCcEeeccCC
Q 043181 278 IGDLKILRYLNFSDAQVETSPE--SVCKLHNLETLKLQNCNRLQKLF-ADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp~--~~~~l~~L~~L~l~~c~~l~~lp-~~i~~l~~L~~L~l~~~ 339 (348)
++.+++|++|++++|.++.+|. .++.+++|++|++++|..+..+| ..++.+++|++|++++|
T Consensus 120 ~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp HTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred hCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 5556666666666666666655 45566666666666644455553 34556666666666665
No 69
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.20 E-value=1.6e-06 Score=69.86 Aligned_cols=70 Identities=29% Similarity=0.376 Sum_probs=55.1
Q ss_pred ccccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCCCC
Q 043181 276 SEIGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
..++.+.+|++|++++|.++.+|+. ++.+++|+.|++++ +.+..+|.. +..+++|++|++++| .+..+|+
T Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~ 117 (177)
T 2o6r_A 46 GVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE-NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPD 117 (177)
T ss_dssp TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred HHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC-CCccccCHHHhhCCcccCEEECcCC-cceEeCH
Confidence 3467888888899888888887765 57888888988888 577777765 578888888888888 6666664
No 70
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.19 E-value=2e-06 Score=75.78 Aligned_cols=65 Identities=29% Similarity=0.448 Sum_probs=45.8
Q ss_pred CCccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVT 339 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~ 339 (348)
+|..+..+++|++|++++|.++.+ |..+..+++|+.|++++ +.+..+|. .+..+++|++|++++|
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT-SCCSBCCSGGGTTCTTCCEEECTTS
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCC-CccCccChhhccCcccCCEeECCCC
Confidence 566677777777777777777765 55667777777777777 45555554 4666777777777777
No 71
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.19 E-value=1.5e-06 Score=84.24 Aligned_cols=109 Identities=19% Similarity=0.229 Sum_probs=77.1
Q ss_pred cccCccccceeeeccCcccccccccchhHHHHhhhhccccee------eCC-ccccCCCCccEEecCCCCCccCch-hhh
Q 043181 231 AIDGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY------ELP-SEIGDLKILRYLNFSDAQVETSPE-SVC 302 (348)
Q Consensus 231 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~p-~~~~~l~~L~~l~l~~~~~~~lp~-~~~ 302 (348)
.+.++++|+.|....+... .+....+ ..+.+++.|.+ .+| ..+..+.+|++|++++|.++.+|+ .++
T Consensus 71 ~f~~l~~L~~L~Ls~N~i~----~i~~~~f-~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~ 145 (635)
T 4g8a_A 71 SFFSFPELQVLDLSRCEIQ----TIEDGAY-QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 145 (635)
T ss_dssp TTTTCTTCCEEECTTCCCC----EECTTTT-TTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCT
T ss_pred HHhCCCCCCEEECCCCcCC----CcChhHh-cCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhh
Confidence 3567788888877665431 1111111 11334444444 455 457999999999999999999876 489
Q ss_pred ccCCCCEeeccCCCccc--hhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 303 KLHNLETLKLQNCNRLQ--KLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 303 ~l~~L~~L~l~~c~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.+++|++|++++ +.+. .+|..++.+++|++|++++| .+..++
T Consensus 146 ~L~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 189 (635)
T 4g8a_A 146 HLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIY 189 (635)
T ss_dssp TCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSS-CCCEEC
T ss_pred cCcccCeecccc-CccccCCCchhhccchhhhhhcccCc-cccccc
Confidence 999999999998 4554 45788899999999999998 555443
No 72
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.19 E-value=1.6e-06 Score=83.91 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=28.1
Q ss_pred cCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 279 GDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 279 ~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
+.+++|++|++++|.+..+|+ .++.+++|++|++++ +.+..+| ++.+++|++|++++|
T Consensus 144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~--~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHVD--LSLIPSLFHANVSYN 202 (597)
T ss_dssp TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBCC--GGGCTTCSEEECCSS
T ss_pred ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCcC--hhhhhhhhhhhcccC
Confidence 455555555555555544332 345555555555555 3344443 334444444444444
No 73
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.17 E-value=8.2e-07 Score=75.36 Aligned_cols=68 Identities=12% Similarity=0.093 Sum_probs=43.8
Q ss_pred cccCCCCccEEecCC-CCCccCch-hhhccCCCCEeeccCCCccchhHHHhcccccCc---EeeccCCCCCCCCC
Q 043181 277 EIGDLKILRYLNFSD-AQVETSPE-SVCKLHNLETLKLQNCNRLQKLFADIGNLNNLH---HLDNFVTFSLESLE 346 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~-~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~---~L~l~~~~~l~~lp 346 (348)
.+..+++|++|++++ |.++.+|+ .+..+++|+.|++++ +.+..+|. ++.+++|+ +|++++|..+..+|
T Consensus 75 ~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~-n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~ 147 (239)
T 2xwt_C 75 SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN-TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP 147 (239)
T ss_dssp TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEE-ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC
T ss_pred HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCC-CCCccccc-cccccccccccEEECCCCcchhhcC
Confidence 456677777777776 66666653 456677777777776 45666665 66666666 77777664444444
No 74
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.17 E-value=1.9e-06 Score=77.88 Aligned_cols=72 Identities=22% Similarity=0.271 Sum_probs=61.6
Q ss_pred CCccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchh-HHHhcccccCcEeeccCCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKL-FADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.|..+..+++|++|+|++|.++.+|+ .+..+++|+.|+|++ +.+..+ |..+..+++|++|++++| .+..+|.
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~ 153 (361)
T 2xot_A 80 SSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPV 153 (361)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCSCCG
T ss_pred ChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCCC-cCCeeCH
Confidence 34568999999999999999998876 578999999999999 567777 567899999999999999 7777763
No 75
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.15 E-value=1.8e-06 Score=78.79 Aligned_cols=72 Identities=17% Similarity=0.133 Sum_probs=60.2
Q ss_pred eCCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
..|..+..+++|++|++++|.++.+|..+..+++|+.|++++ +.+..+|..++.+++|+.|++++| .+..+|
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~ 334 (390)
T 3o6n_A 263 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH-NHLLHVERNQPQFDRLENLYLDHN-SIVTLK 334 (390)
T ss_dssp EESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCS-SCCCCCGGGHHHHTTCSEEECCSS-CCCCCC
T ss_pred cChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCC-CcceecCccccccCcCCEEECCCC-ccceeC
Confidence 347778889999999999999888888888889999999998 478888888888889999999888 565554
No 76
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.15 E-value=5.5e-06 Score=80.04 Aligned_cols=67 Identities=19% Similarity=0.360 Sum_probs=43.0
Q ss_pred ccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 276 SEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
+.+..+++|+.|+|++|.++.+ +.++.+++|+.|+|++ +.+..+++ +..+++|+.|+|++| .+..+|
T Consensus 125 ~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~ 191 (605)
T 1m9s_A 125 NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSKN-HISDLR 191 (605)
T ss_dssp GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-CCCBCG
T ss_pred ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC-CcCCCchh-hccCCCCCEEECcCC-CCCCCh
Confidence 3456666666666666666666 4466677777777776 35555555 667777777777776 454444
No 77
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.15 E-value=2.5e-06 Score=75.69 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=51.0
Q ss_pred cCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCC
Q 043181 279 GDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 279 ~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~ 340 (348)
..+++|++|++++|.++.+|+.+..+++|+.|++++ +.+..+|..+..+++|+.|++++|.
T Consensus 188 ~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 188 VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cccccCCEEECCCCcCCcchhhhcccCcccEEECcC-CcccchhhHhhcCCCCCEEEccCCC
Confidence 357888888888888888888888888888888888 5777888888888888888888884
No 78
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.14 E-value=8.8e-06 Score=70.11 Aligned_cols=55 Identities=29% Similarity=0.430 Sum_probs=32.4
Q ss_pred CCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 282 KILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 282 ~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
.+|++|++++|.++.+| .++.+++|+.|++++ +.+..+| .++.+++|++|++++|
T Consensus 106 ~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 106 ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRN-NKLKSIV-MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTT-SCCCBCG-GGGGCTTCCEEECTTS
T ss_pred CcccEEEccCCccCCCh-hhcCcccccEEECCC-CcCCCCh-HHccCCCCCEEECCCC
Confidence 55666666666665554 355666666666665 3455555 3556666666666655
No 79
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.13 E-value=2.6e-06 Score=76.03 Aligned_cols=70 Identities=20% Similarity=0.256 Sum_probs=55.5
Q ss_pred CccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 275 PSEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 275 p~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
|..+..+++|++|++++|.+..+|+ .++.+++|+.|++++ +.+..+|.++..+++|++|++++| .+..+|
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~lp~~l~~l~~L~~L~l~~N-~l~~~~ 280 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN-NKLSRVPAGLPDLKLLQVVYLHTN-NITKVG 280 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCS-SCCCBCCTTGGGCTTCCEEECCSS-CCCBCC
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCC-CcCeecChhhhcCccCCEEECCCC-CCCccC
Confidence 4567788888888888888887654 678888888888887 577788888888888888888888 666665
No 80
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.13 E-value=7.6e-07 Score=86.83 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=64.0
Q ss_pred CCcccc--CCCCccEEecCCCCCc-cCchhhhccCCCCEeeccCCCccc--hhHHHhccc------ccCcEeeccCCCCC
Q 043181 274 LPSEIG--DLKILRYLNFSDAQVE-TSPESVCKLHNLETLKLQNCNRLQ--KLFADIGNL------NNLHHLDNFVTFSL 342 (348)
Q Consensus 274 ~p~~~~--~l~~L~~l~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~l~--~lp~~i~~l------~~L~~L~l~~~~~l 342 (348)
+|..++ ++++|++|++++|.+. .+|+.++++++|++|++++|..+. .+|.+++++ ++|++|++++| .+
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cC
Confidence 899999 9999999999999855 689999999999999999965355 699999887 89999999999 66
Q ss_pred CCCCC
Q 043181 343 ESLES 347 (348)
Q Consensus 343 ~~lp~ 347 (348)
..+|.
T Consensus 318 ~~ip~ 322 (636)
T 4eco_A 318 KTFPV 322 (636)
T ss_dssp SSCCC
T ss_pred CccCc
Confidence 68875
No 81
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.13 E-value=1.8e-06 Score=77.82 Aligned_cols=72 Identities=19% Similarity=0.138 Sum_probs=60.8
Q ss_pred CCccccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchhHH--HhcccccCcEeeccCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKLFA--DIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~--~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.|..++.+++|++|++++|.++.+|+. ++.+++|++|++++ +.+..+|. .+.++++|++|++++|..+..+|
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 456788999999999999999998877 78899999999998 57888887 68889999999999885555553
No 82
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.13 E-value=7.2e-06 Score=73.44 Aligned_cols=61 Identities=20% Similarity=0.312 Sum_probs=37.6
Q ss_pred cccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 277 EIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
.+..+++|++|++++|.+..+|+ +..+++|+.|++++|..+..+|. +..+++|++|++++|
T Consensus 105 ~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~ 165 (347)
T 4fmz_A 105 ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES 165 (347)
T ss_dssp GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS
T ss_pred HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC
Confidence 46666777777777776666655 66666666666666555554443 555555555555555
No 83
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.12 E-value=2.6e-06 Score=74.99 Aligned_cols=73 Identities=23% Similarity=0.380 Sum_probs=61.0
Q ss_pred eCCccccCCCCccEEecCCCCCcc--CchhhhccCCCCEeeccCCCccchh-HHHhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVET--SPESVCKLHNLETLKLQNCNRLQKL-FADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~--lp~~~~~l~~L~~L~l~~c~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
..|..+..+++|++|++++|.+.. +|..+..+++|+.|++++| .+..+ |..+.++++|++|++++| .+..+|.
T Consensus 141 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 216 (306)
T 2z66_A 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDT 216 (306)
T ss_dssp CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCSBCCS
T ss_pred cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCC-ccCccCh
Confidence 456678899999999999999875 7888999999999999995 56666 667889999999999999 5665543
No 84
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.12 E-value=4e-06 Score=81.03 Aligned_cols=66 Identities=24% Similarity=0.335 Sum_probs=54.1
Q ss_pred ccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCC
Q 043181 276 SEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESL 345 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~l 345 (348)
..++.+++|+.|+|++|.+..+++ +..+++|+.|+|++ +.+..+| .+..|++|+.|++++| .+...
T Consensus 147 ~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~-N~i~~l~-~l~~l~~L~~L~L~~N-~l~~~ 212 (605)
T 1m9s_A 147 TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSK-NHISDLR-ALAGLKNLDVLELFSQ-ECLNK 212 (605)
T ss_dssp GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCS-SCCCBCG-GGTTCTTCSEEECCSE-EEECC
T ss_pred hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcC-CCCCCCh-HHccCCCCCEEEccCC-cCcCC
Confidence 567888999999999999888877 88899999999998 4777776 4888899999999888 44443
No 85
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.11 E-value=3e-06 Score=82.00 Aligned_cols=73 Identities=23% Similarity=0.261 Sum_probs=48.9
Q ss_pred CCccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
+|..++.+++|++|++++|.++.+ |..++.+++|+.|++++|.-....|..++++++|+.|++++| .+..+|.
T Consensus 465 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~p~ 538 (606)
T 3vq2_A 465 LSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKG 538 (606)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCCEES
T ss_pred hHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcccCH
Confidence 566677777777777777777654 455677777777777775333333666777777777777777 5555553
No 86
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.11 E-value=2.5e-06 Score=79.55 Aligned_cols=74 Identities=22% Similarity=0.198 Sum_probs=62.2
Q ss_pred eCCccccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
..|..+..+++|++|++++|.++.+|+. ++.+++|+.|++++ +.+..+|. .+.++++|++|++++|..++.+|.
T Consensus 114 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred cChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCccccCh
Confidence 3457788999999999999999988765 78899999999998 57888876 578899999999999777776653
No 87
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.10 E-value=3.4e-06 Score=78.56 Aligned_cols=72 Identities=21% Similarity=0.172 Sum_probs=49.6
Q ss_pred CCccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.|..++.+++|++|++++|.++.+ |..++.+++|++|++++ +.+..+|.. +..+++|++|++++|+.....|
T Consensus 339 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT-NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC-CccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 355667777777777777777765 56677777777777777 466667664 4677777777777775444444
No 88
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.10 E-value=3.9e-06 Score=78.11 Aligned_cols=73 Identities=23% Similarity=0.175 Sum_probs=62.0
Q ss_pred eCCccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchh-HHHhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKL-FADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
..|..++.+++|++|++++|.++.+ |..++.+++|+.|++++| .+..+ |..++.+++|++|++++| .+..+|+
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~ 388 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTN-QLKSVPD 388 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCT
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCC-ccccCCH
Confidence 3467889999999999999999876 667899999999999995 56666 778999999999999999 7777764
No 89
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.09 E-value=1.3e-07 Score=77.94 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=65.4
Q ss_pred hhhccccee------eCCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeecc
Q 043181 264 SLKLQCFRY------ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNF 337 (348)
Q Consensus 264 ~~~~~~l~~------~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~ 337 (348)
+.+++.|.+ .+| .+..+++|++|++++|.++.+|..+..+++|+.|++++ +.+..+| .++.+++|++|+++
T Consensus 47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-EECCCHH-HHHHHHHSSEEEES
T ss_pred CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-CcCCcCC-ccccCCCCCEEECC
Confidence 445555554 566 88899999999999999999999888899999999998 5888888 59999999999999
Q ss_pred CCCCCCCC
Q 043181 338 VTFSLESL 345 (348)
Q Consensus 338 ~~~~l~~l 345 (348)
+| .+..+
T Consensus 124 ~N-~i~~~ 130 (198)
T 1ds9_A 124 NN-KITNW 130 (198)
T ss_dssp EE-ECCCH
T ss_pred CC-cCCch
Confidence 98 55543
No 90
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.08 E-value=1.9e-07 Score=76.98 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=77.4
Q ss_pred cccCccccceeeeccCcccccccccchhHHHHhhhhccccee------eCCccccCCCCccEEecCCCCCccCchhhhcc
Q 043181 231 AIDGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY------ELPSEIGDLKILRYLNFSDAQVETSPESVCKL 304 (348)
Q Consensus 231 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l 304 (348)
.+..+++|+.+...++... .+. .+ ..+.+++.|.+ .+|..+..+++|++|++++|.++.+| .++.+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~----~l~--~~-~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIE----KIS--SL-SGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp HHHHTTTCSEEECSEEEES----CCC--CH-HHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred HHhcCCCCCEEECCCCCCc----ccc--cc-ccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 3456778888877655431 121 11 22456666665 67777788899999999999999987 69999
Q ss_pred CCCCEeeccCCCccchhHH--HhcccccCcEeeccCCC
Q 043181 305 HNLETLKLQNCNRLQKLFA--DIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 305 ~~L~~L~l~~c~~l~~lp~--~i~~l~~L~~L~l~~~~ 340 (348)
++|+.|++++ +.+..+|. .+..+++|++|++++|.
T Consensus 115 ~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 115 VNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred CCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCc
Confidence 9999999999 67888775 78999999999999983
No 91
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.06 E-value=1.7e-05 Score=70.93 Aligned_cols=69 Identities=25% Similarity=0.289 Sum_probs=49.6
Q ss_pred ccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 276 SEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
+.+..+++|++|++++|.++.+| .+..+++|+.|++++|.-....|..++.+++|++|++++| .+..+|
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~ 327 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN-HITDIR 327 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSS-SCCCCG
T ss_pred hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCC-cccccc
Confidence 45677778888888888777774 4777788888888886444455566777888888888887 455554
No 92
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.06 E-value=3.9e-06 Score=79.08 Aligned_cols=62 Identities=18% Similarity=0.111 Sum_probs=50.2
Q ss_pred ccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCC
Q 043181 278 IGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~ 340 (348)
...+++|++|++++|.++.+|+.++.+++|+.|++++ +.+..+|..++.+++|+.|++++|.
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCC
T ss_pred cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCC
Confidence 3457888888888888888888888888888888888 5677788888888888888888874
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.05 E-value=3.6e-06 Score=79.36 Aligned_cols=71 Identities=17% Similarity=0.144 Sum_probs=59.9
Q ss_pred CCcccc-CCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 274 LPSEIG-DLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 274 ~p~~~~-~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.|..+. .+++|++|++++|.++.+|+ ...+++|+.|+|++ +.+..+|++++.+++|+.|++++| .+..+|.
T Consensus 160 ~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~ 231 (487)
T 3oja_A 160 NFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEK 231 (487)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECT
T ss_pred ChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCC-cCcccch
Confidence 455665 78999999999999988866 45689999999999 678899989999999999999999 6666664
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.04 E-value=2.3e-06 Score=72.56 Aligned_cols=68 Identities=21% Similarity=0.133 Sum_probs=37.0
Q ss_pred ccCCCCcc---EEecCCC-CCccCchh-hhccCCCC-EeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 278 IGDLKILR---YLNFSDA-QVETSPES-VCKLHNLE-TLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 278 ~~~l~~L~---~l~l~~~-~~~~lp~~-~~~l~~L~-~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
++.+.+|+ +|++++| .++.+|+. +..+++|+ .|++++ +.+..+|..+...++|+.|++++|..++.+|
T Consensus 123 ~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~ 196 (239)
T 2xwt_C 123 LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN-NGFTSVQGYAFNGTKLDAVYLNKNKYLTVID 196 (239)
T ss_dssp CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCS-CCCCEECTTTTTTCEEEEEECTTCTTCCEEC
T ss_pred cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCC-CCCcccCHhhcCCCCCCEEEcCCCCCcccCC
Confidence 44555555 6666666 55555443 55566666 666665 3455565544444556666666663344443
No 95
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.03 E-value=2.7e-06 Score=81.19 Aligned_cols=62 Identities=27% Similarity=0.420 Sum_probs=38.2
Q ss_pred ccCCCCccEEecCCCCCcc--CchhhhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCC
Q 043181 278 IGDLKILRYLNFSDAQVET--SPESVCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVT 339 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~--lp~~~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~ 339 (348)
++.+++|++|++++|.++. .|..++.+++|++|++++|..+..+|. .++++++|++|++++|
T Consensus 94 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 94 FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 5666666666666666653 345566666666666666544555653 4666666666666666
No 96
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.03 E-value=8e-06 Score=80.12 Aligned_cols=67 Identities=19% Similarity=0.139 Sum_probs=40.6
Q ss_pred eCCc-cccCCCCccEEecCCCCCccCc-hhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 273 ELPS-EIGDLKILRYLNFSDAQVETSP-ESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 273 ~~p~-~~~~l~~L~~l~l~~~~~~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
.+|. .++.+.+|++|++++|.+..+| ..++.+++|++|++++|......|..++++++|++|++++|
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 155 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNN 155 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSS
T ss_pred ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCC
Confidence 3443 4666777777777777666655 35666777777777664333333444556666666666666
No 97
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.03 E-value=4.5e-06 Score=79.16 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=44.1
Q ss_pred CCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccch--hHHHhcccccCcEeeccCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQK--LFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~--lp~~i~~l~~L~~L~l~~~ 339 (348)
.|..++.+++|++|++++|.++.+|.. .+++|++|++++| .+.. +|..++++++|++|++++|
T Consensus 61 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n 125 (520)
T 2z7x_B 61 DISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTT 125 (520)
T ss_dssp EGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEES
T ss_pred ChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCC-ccccccchhhhccCCcceEEEecCc
Confidence 356677777777777777777777765 6777777777773 4443 5667777777777777766
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.03 E-value=5.7e-06 Score=73.06 Aligned_cols=65 Identities=17% Similarity=0.101 Sum_probs=40.2
Q ss_pred CCccccCCCCccEEecCCCCCcc---Cchh--hhccCCCCEeeccCCCccchhHHH----hcccccCcEeeccCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVET---SPES--VCKLHNLETLKLQNCNRLQKLFAD----IGNLNNLHHLDNFVT 339 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~---lp~~--~~~l~~L~~L~l~~c~~l~~lp~~----i~~l~~L~~L~l~~~ 339 (348)
.|..++.+++|++|++++|.+.. +|.. ++.+++|++|++++ +.+..+|.. ++++++|++|++++|
T Consensus 161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 161 SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN-TGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC-CCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 34566777777777777777542 3322 25667777777776 355555542 355666777777666
No 99
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.02 E-value=8.2e-06 Score=72.13 Aligned_cols=60 Identities=22% Similarity=0.173 Sum_probs=47.1
Q ss_pred ccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 276 SEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
..+..+++|++|++++|.++.+|..+. ++|+.|++++ +.+..+|. +..+++|++|++++|
T Consensus 247 ~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 247 PSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp SCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTC
T ss_pred hhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCC-CCCCCChh-HhhCCCCCEEeccCC
Confidence 345567888888888888888887776 7888888887 57777776 788888888888887
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.01 E-value=4.8e-06 Score=71.79 Aligned_cols=77 Identities=25% Similarity=0.240 Sum_probs=58.8
Q ss_pred hhhccccee------eCCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeecc
Q 043181 264 SLKLQCFRY------ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNF 337 (348)
Q Consensus 264 ~~~~~~l~~------~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~ 337 (348)
+.+++.|.+ .+| .++.+++|++|++++|.++.+|+ ++.+++|+.|++++ +.+..+|. +.. ++|++|+++
T Consensus 40 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~-N~l~~l~~-~~~-~~L~~L~L~ 114 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR-NRLKNLNG-IPS-ACLSRLFLD 114 (263)
T ss_dssp HTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS-SCCSCCTT-CCC-SSCCEEECC
T ss_pred cCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC-CccCCcCc-ccc-CcccEEEcc
Confidence 444555444 445 67888899999999999888887 88899999999998 57888876 334 889999998
Q ss_pred CCCCCCCCC
Q 043181 338 VTFSLESLE 346 (348)
Q Consensus 338 ~~~~l~~lp 346 (348)
+| .+..+|
T Consensus 115 ~N-~l~~~~ 122 (263)
T 1xeu_A 115 NN-ELRDTD 122 (263)
T ss_dssp SS-CCSBSG
T ss_pred CC-ccCCCh
Confidence 88 666554
No 101
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.01 E-value=4.6e-06 Score=77.50 Aligned_cols=73 Identities=22% Similarity=0.255 Sum_probs=61.1
Q ss_pred CCccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+..+..+++|++|++++|.++.+|+ .+..+++|+.|++++ +.+..+|. .+.++++|++|++++|..+..+|.
T Consensus 104 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~ 178 (440)
T 3zyj_A 104 EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYISE 178 (440)
T ss_dssp CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECT
T ss_pred ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcceeCc
Confidence 34678899999999999999998876 588999999999998 57888876 578899999999998767666553
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.01 E-value=4.9e-06 Score=73.76 Aligned_cols=70 Identities=17% Similarity=0.160 Sum_probs=58.9
Q ss_pred Cccc-cCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 275 PSEI-GDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 275 p~~~-~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
|..+ ..+++|++|++++|.++.+|. ...+++|+.|++++ +.+..+|+.+..+++|++|++++| .+..+|.
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~ 231 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEK 231 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTS-CCCEECT
T ss_pred HHHHhhccCcCCEEECCCCcCccccc-ccccccCCEEECCC-CcCCcchhhhcccCcccEEECcCC-cccchhh
Confidence 3444 478999999999999998865 44589999999999 688899989999999999999999 7777664
No 103
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.99 E-value=5.2e-06 Score=79.52 Aligned_cols=66 Identities=23% Similarity=0.361 Sum_probs=31.6
Q ss_pred CCccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~~ 340 (348)
+|..+..+++|++|++++|.++.+ |..++.+++|+.|++++| .+..+|+ .+.++++|+.|++++|+
T Consensus 462 ~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred chhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCc
Confidence 344444555555555555554443 444455555555555542 3333332 24455555555555543
No 104
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.96 E-value=5.3e-06 Score=83.57 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=50.1
Q ss_pred eCCccccCCCCccEEecCCCCCcc-Cchh--hhccCCCCEeeccCCCccchh--HHHhcccccCcEeeccCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVET-SPES--VCKLHNLETLKLQNCNRLQKL--FADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~-lp~~--~~~l~~L~~L~l~~c~~l~~l--p~~i~~l~~L~~L~l~~~ 339 (348)
..|..++.+.+|++|++++|.+.. +|+. ++++++|++|++++| .+..+ |..++++++|++|++++|
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC
Confidence 357778888888888888888765 5555 788888888888884 45444 246788888888888887
No 105
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.96 E-value=9.1e-06 Score=77.93 Aligned_cols=63 Identities=22% Similarity=0.200 Sum_probs=47.7
Q ss_pred CCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhH--HHhcccccCcEeeccCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLF--ADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp--~~i~~l~~L~~L~l~~~ 339 (348)
.|..++.+++|++|++++|.++++|.. .+++|++|++++ +.+..+| ..++++++|++|++++|
T Consensus 92 ~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~-N~l~~l~~p~~~~~l~~L~~L~L~~n 156 (562)
T 3a79_B 92 DFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSF-NDFDVLPVCKEFGNLTKLTFLGLSAA 156 (562)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCS-SCCSBCCCCGGGGGCTTCCEEEEECS
T ss_pred CHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCC-CCccccCchHhhcccCcccEEecCCC
Confidence 356677888888888888888887776 778888888887 4565543 67788888888888777
No 106
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.95 E-value=8.8e-06 Score=79.83 Aligned_cols=70 Identities=24% Similarity=0.264 Sum_probs=60.1
Q ss_pred CCccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhH-HHhcccccCcEeeccCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLF-ADIGNLNNLHHLDNFVTFSLESL 345 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp-~~i~~l~~L~~L~l~~~~~l~~l 345 (348)
.|..++++++|++|++++|.++.+|+ .++.+++|++|++++| .+..+| ..++++++|++|++++| .+...
T Consensus 65 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~ 136 (680)
T 1ziw_A 65 EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHN-GLSST 136 (680)
T ss_dssp CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSS-CCSCC
T ss_pred CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCC-ccCccChhHccccCCCCEEECCCC-ccccc
Confidence 46778899999999999999999987 5899999999999994 677777 46899999999999999 44443
No 107
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.95 E-value=7.6e-06 Score=76.75 Aligned_cols=68 Identities=24% Similarity=0.260 Sum_probs=46.3
Q ss_pred cccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchh-HHHhcccccCcEeeccCCCCCCCCC
Q 043181 277 EIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKL-FADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~l-p~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.+..+++|++|++++|.+..+ |..+..+++|+.|++++ +.+..+ |..+.++++|++|++++| .+..+|
T Consensus 99 ~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~ 168 (477)
T 2id5_A 99 VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKC-NLTSIP 168 (477)
T ss_dssp SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCCEEEEESC-CCSSCC
T ss_pred cccCCCCCCEEECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCCEEECCCC-cCcccC
Confidence 356777777777777777654 45667777777777777 344444 445777778888888777 555554
No 108
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.94 E-value=1.7e-05 Score=70.62 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=57.3
Q ss_pred eCCccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
.+|..+. ++|++|++++|.++.+ |..+..+++|+.|++++ +.+..+|. .+..+++|++|++++| .+..+|.
T Consensus 185 ~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~ 257 (330)
T 1xku_A 185 TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF-NSISAVDNGSLANTPHLRELHLNNN-KLVKVPG 257 (330)
T ss_dssp SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS-SCCCEECTTTGGGSTTCCEEECCSS-CCSSCCT
T ss_pred cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC-CcCceeChhhccCCCCCCEEECCCC-cCccCCh
Confidence 4554443 7899999999998875 67889999999999998 46666665 6889999999999999 7777774
No 109
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.94 E-value=1.3e-05 Score=69.31 Aligned_cols=44 Identities=36% Similarity=0.582 Sum_probs=26.4
Q ss_pred cccCCCCccEEecCCCCCcc--CchhhhccCCCCEeeccCCCccchh
Q 043181 277 EIGDLKILRYLNFSDAQVET--SPESVCKLHNLETLKLQNCNRLQKL 321 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~~~--lp~~~~~l~~L~~L~l~~c~~l~~l 321 (348)
.++.+++|++|++++|.+.. +|..++.+++|+.|++++| .+..+
T Consensus 119 ~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~ 164 (276)
T 2z62_A 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSI 164 (276)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSS-CCCEE
T ss_pred hcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCC-CCCcC
Confidence 45666666666666666654 4566666666666666663 34443
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=97.94 E-value=1.4e-05 Score=70.58 Aligned_cols=61 Identities=25% Similarity=0.234 Sum_probs=44.1
Q ss_pred CccccCC---CCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 275 PSEIGDL---KILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 275 p~~~~~l---~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
|..+..+ ++|++|++++|.++.+|..+. ++|+.|++++ +.+..+|. +..+++|+.|++++|
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSS-NRLNRAPQ-PDELPEVDNLTLDGN 304 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCS-CCCCSCCC-TTSCCCCSCEECSST
T ss_pred hhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCC-CcCCCCch-hhhCCCccEEECcCC
Confidence 5556655 577888888877777777664 6778888877 56777665 667777888888777
No 111
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.93 E-value=1.2e-05 Score=76.77 Aligned_cols=73 Identities=22% Similarity=0.170 Sum_probs=59.2
Q ss_pred eCCccccCCCCccEEecCCCCCccCchh-hhccCCCCEeeccCCCccc--hhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPES-VCKLHNLETLKLQNCNRLQ--KLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c~~l~--~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
..|..++.+++|++|++++|.++.+|+. ++.+++|++|++++| .+. .+|..++++++|++|++++|..++.+|
T Consensus 65 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 140 (549)
T 2z81_A 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR 140 (549)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccC
Confidence 3457788999999999999999887765 899999999999984 565 346678899999999999886566555
No 112
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.92 E-value=1.1e-05 Score=71.88 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=53.7
Q ss_pred CCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSL 342 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l 342 (348)
.|..++.+++|++|++++|.++.+|..+. ++|++|++++ +.+..+|.. +.++++|++|++++| .+
T Consensus 94 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n-~l 159 (332)
T 2ft3_A 94 HEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGN-PL 159 (332)
T ss_dssp CGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSC-CC
T ss_pred CHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCC-cc
Confidence 46778889999999999998888888766 7899999988 567777764 788999999999988 44
No 113
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.91 E-value=3.2e-05 Score=73.23 Aligned_cols=66 Identities=21% Similarity=0.241 Sum_probs=36.4
Q ss_pred ccCCCCccEEecCCCCCc-cCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 278 IGDLKILRYLNFSDAQVE-TSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
+..+++|++|++++|.++ .+|..+. ++|+.|++++ +.+..+|.++..+++|++|++++| .+..+|.
T Consensus 395 ~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~ 461 (520)
T 2z7x_B 395 CSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHS-NKIKSIPKQVVKLEALQELNVASN-QLKSVPD 461 (520)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCSS-CCCCCCT
T ss_pred hccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCC-CcccccchhhhcCCCCCEEECCCC-cCCccCH
Confidence 455555666666555553 2333332 4566666665 355566666666666666666666 4555553
No 114
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=97.90 E-value=7.7e-06 Score=72.31 Aligned_cols=107 Identities=19% Similarity=0.165 Sum_probs=71.6
Q ss_pred CccccceeeeccCcccccccccchhHHHHhhhhccccee------eCCccccCC-----CCccEEecCCCCCccCc-hhh
Q 043181 234 GVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY------ELPSEIGDL-----KILRYLNFSDAQVETSP-ESV 301 (348)
Q Consensus 234 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~p~~~~~l-----~~L~~l~l~~~~~~~lp-~~~ 301 (348)
++++|+.+...++..... .....+...+.+++.|.+ ..|..++.+ ++|++|++++|.+..+| ..+
T Consensus 93 ~l~~L~~L~L~~n~l~~~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGT---APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp TTSCCCEEEEEEEBCBSC---CCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred CcCCccEEEccCCcccch---hHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 466777777665543110 011110012344555554 346666666 89999999999998876 788
Q ss_pred hccCCCCEeeccCCCccch--hHHHh--cccccCcEeeccCCCCCCC
Q 043181 302 CKLHNLETLKLQNCNRLQK--LFADI--GNLNNLHHLDNFVTFSLES 344 (348)
Q Consensus 302 ~~l~~L~~L~l~~c~~l~~--lp~~i--~~l~~L~~L~l~~~~~l~~ 344 (348)
+.+++|+.|++++|...+. +|..+ +.+++|++|++++| .+..
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~ 215 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMET 215 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCC
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcc
Confidence 9999999999998654444 46666 88999999999998 5553
No 115
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.89 E-value=1.5e-05 Score=74.63 Aligned_cols=101 Identities=17% Similarity=0.290 Sum_probs=74.3
Q ss_pred CccccceeeeccCcccccccccchhHHHHhhhhccccee------eCCccccCCCCccEEecCCCCCccCchhhhccCCC
Q 043181 234 GVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY------ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNL 307 (348)
Q Consensus 234 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L 307 (348)
.+++++.+...+... ..+.. ...+.+++.|.+ .+|+ ++.+.+|++|++++|.+..+|+ ++.+++|
T Consensus 44 ~l~~l~~L~l~~~~i----~~l~~---~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 114 (466)
T 1o6v_A 44 DLDQVTTLQADRLGI----KSIDG---VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNL 114 (466)
T ss_dssp HHHTCCEEECCSSCC----CCCTT---GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred HhccccEEecCCCCC----ccCcc---hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCC
Confidence 456777776655432 11111 112445555554 4454 8999999999999999999888 9999999
Q ss_pred CEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 308 ETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 308 ~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
++|++++ +.+..+|. +.++++|++|++++| .+..+|
T Consensus 115 ~~L~L~~-n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~ 150 (466)
T 1o6v_A 115 TGLTLFN-NQITDIDP-LKNLTNLNRLELSSN-TISDIS 150 (466)
T ss_dssp CEEECCS-SCCCCCGG-GTTCTTCSEEEEEEE-EECCCG
T ss_pred CEEECCC-CCCCCChH-HcCCCCCCEEECCCC-ccCCCh
Confidence 9999998 47888886 899999999999988 555554
No 116
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.87 E-value=1e-05 Score=77.57 Aligned_cols=68 Identities=26% Similarity=0.319 Sum_probs=60.1
Q ss_pred CccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 275 PSEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 275 p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
|..++.+++|++|++++|.++.+ |..++.+++|++|++++ +.+.++|.. .+++|++|++++| .+..+|
T Consensus 69 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~--~l~~L~~L~Ls~N-~l~~l~ 137 (562)
T 3a79_B 69 MPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCC--PMASLRHLDLSFN-DFDVLP 137 (562)
T ss_dssp GGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT-SCCCEECSC--CCTTCSEEECCSS-CCSBCC
T ss_pred hhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC-CcCCccCcc--ccccCCEEECCCC-CccccC
Confidence 46789999999999999999987 66799999999999999 678999986 8999999999999 666654
No 117
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.84 E-value=1.3e-05 Score=71.86 Aligned_cols=65 Identities=18% Similarity=0.052 Sum_probs=55.7
Q ss_pred CccccCCCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCC
Q 043181 275 PSEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 275 p~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~ 340 (348)
|..++.|.+|++|+|++|.++.+|+ .++.|++|+.|+|++ +.+..+|+++....+|+.|++.+|.
T Consensus 49 ~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 49 LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNP 114 (347)
T ss_dssp GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred hhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeCCC
Confidence 4678999999999999999998765 679999999999999 7899999876554459999999883
No 118
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.84 E-value=1.8e-05 Score=79.68 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=33.6
Q ss_pred ccCCCCccEEecCCCCCccC--chhhhccCCCCEeeccCCCccchhHHHhccc--ccCcEeeccCC
Q 043181 278 IGDLKILRYLNFSDAQVETS--PESVCKLHNLETLKLQNCNRLQKLFADIGNL--NNLHHLDNFVT 339 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~l--p~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l--~~L~~L~l~~~ 339 (348)
++++++|++|++++|.+..+ ++.++++++|+.|++++|.--...|..++.+ ++|+.|++++|
T Consensus 119 ~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n 184 (844)
T 3j0a_A 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184 (844)
T ss_dssp CSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCS
T ss_pred ccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCC
Confidence 55666666666666665543 2345666666666666533223334444444 55666666655
No 119
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.84 E-value=1.8e-05 Score=74.13 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=57.7
Q ss_pred eCCccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
..|..+..+++|++|++++|.+..+ |..++.+++|+.|++++ +.+..+|. .+.++++|+.|++++| .+..++
T Consensus 119 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~ 192 (477)
T 2id5_A 119 LLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLHGLIVLRLRHL-NINAIR 192 (477)
T ss_dssp ECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCTTCCEEEEESC-CCCEEC
T ss_pred CChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccCCCcEEeCCCC-cCcEeC
Confidence 3567788999999999999998865 55788999999999998 46777765 4888999999999988 444443
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.84 E-value=1.2e-05 Score=75.35 Aligned_cols=101 Identities=18% Similarity=0.244 Sum_probs=74.9
Q ss_pred cccccccCccccceeeeccCcccccccccchhHHHHhhhhccccee------eCCccccCCCCccEEecCCCCCccCchh
Q 043181 227 KRFEAIDGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY------ELPSEIGDLKILRYLNFSDAQVETSPES 300 (348)
Q Consensus 227 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~p~~~~~l~~L~~l~l~~~~~~~lp~~ 300 (348)
..++.+..+++|+.+...++... .... ...+.+++.|.+ .++. ++.+++|++|++++|.++.+|+
T Consensus 59 ~~l~~~~~l~~L~~L~Ls~n~l~----~~~~---~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~- 129 (466)
T 1o6v_A 59 KSIDGVEYLNNLTQINFSNNQLT----DITP---LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP- 129 (466)
T ss_dssp CCCTTGGGCTTCCEEECCSSCCC----CCGG---GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred ccCcchhhhcCCCEEECCCCccC----Cchh---hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-
Confidence 34455667888888877665431 1111 112344555544 3444 8999999999999999999987
Q ss_pred hhccCCCCEeeccCCCccchhHHHhcccccCcEeeccC
Q 043181 301 VCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFV 338 (348)
Q Consensus 301 ~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~ 338 (348)
++.+++|++|++++ +.+..+|. ++.+++|++|++++
T Consensus 130 ~~~l~~L~~L~l~~-n~l~~~~~-~~~l~~L~~L~l~~ 165 (466)
T 1o6v_A 130 LKNLTNLNRLELSS-NTISDISA-LSGLTSLQQLSFGN 165 (466)
T ss_dssp GTTCTTCSEEEEEE-EEECCCGG-GTTCTTCSEEEEEE
T ss_pred HcCCCCCCEEECCC-CccCCChh-hccCCcccEeecCC
Confidence 99999999999999 47888875 89999999999864
No 121
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.81 E-value=2.3e-05 Score=69.78 Aligned_cols=65 Identities=22% Similarity=0.209 Sum_probs=41.7
Q ss_pred ccccCCCCccEEecCCC-CCcc--CchhhhccC-CCCEeeccCCC-cc--chhHHHhcccccCcEeeccCCC
Q 043181 276 SEIGDLKILRYLNFSDA-QVET--SPESVCKLH-NLETLKLQNCN-RL--QKLFADIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~-~~~~--lp~~~~~l~-~L~~L~l~~c~-~l--~~lp~~i~~l~~L~~L~l~~~~ 340 (348)
..+..+++|++|++++| .++. +|..+..++ +|+.|++++|. .+ ..+|..+.++++|++|++++|.
T Consensus 162 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 162 TLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp HHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred HHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 33556666777777776 5653 566666677 77777777653 22 5566666677777777777764
No 122
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.78 E-value=2.7e-05 Score=72.69 Aligned_cols=101 Identities=18% Similarity=0.198 Sum_probs=73.8
Q ss_pred cccCccccceeeeccCcccccccccchhHHHHhhhhccccee------eCCccccCCCCccEEecCCCCCccCchhhhcc
Q 043181 231 AIDGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY------ELPSEIGDLKILRYLNFSDAQVETSPESVCKL 304 (348)
Q Consensus 231 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l 304 (348)
.+.++++|+.+...++... ... . + ..+.+++.|.+ .+| ++.+++|++|++++|.++.+| ++.+
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~----~~~-~-l-~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l 105 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSIT----DMT-G-I-EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPL 105 (457)
T ss_dssp EHHHHTTCCEEECCSSCCC----CCT-T-G-GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred ChhHcCCCCEEEccCCCcc----cCh-h-h-cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCC
Confidence 4556778888877665431 111 1 1 12344555544 344 889999999999999999886 8899
Q ss_pred CCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 305 HNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 305 ~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
++|++|++++ +.+..+| ++++++|++|++++| .+..+|
T Consensus 106 ~~L~~L~L~~-N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~ 143 (457)
T 3bz5_A 106 TKLTYLNCDT-NKLTKLD--VSQNPLLTYLNCARN-TLTEID 143 (457)
T ss_dssp TTCCEEECCS-SCCSCCC--CTTCTTCCEEECTTS-CCSCCC
T ss_pred CcCCEEECCC-CcCCeec--CCCCCcCCEEECCCC-ccceec
Confidence 9999999998 5788887 889999999999998 565553
No 123
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.78 E-value=4e-05 Score=74.05 Aligned_cols=68 Identities=12% Similarity=0.171 Sum_probs=39.4
Q ss_pred ccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCC
Q 043181 276 SEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESL 345 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~l 345 (348)
..+..+++|++|++++|.++.+ |..++.+++|+.|++++|.-....|..+.++++| +|++++| .+..+
T Consensus 470 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~ 538 (606)
T 3t6q_A 470 NSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASN-HISII 538 (606)
T ss_dssp CGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCC
T ss_pred hhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCC-ccccc
Confidence 3455666666666666666554 4556666666666666643334445556666666 6666666 34333
No 124
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.75 E-value=3.8e-05 Score=71.70 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=34.2
Q ss_pred ccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 278 IGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
++.+++|++|++++|.++.+| ++.+++|+.|++++|..++.++ ++.+++|++|++++| .+..+|
T Consensus 123 ~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n-~l~~l~ 186 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN-KITELD 186 (457)
T ss_dssp CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSS-CCCCCC
T ss_pred CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCC-ccceec
Confidence 445555555555555555543 4555555555555544455542 555666666666665 444443
No 125
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.72 E-value=2.5e-05 Score=74.78 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=53.2
Q ss_pred hhhccccee------eCCccccCCCCccEEecCCCCCccCchhhhccCCC-------CEeeccCCCccchhHHHhccccc
Q 043181 264 SLKLQCFRY------ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNL-------ETLKLQNCNRLQKLFADIGNLNN 330 (348)
Q Consensus 264 ~~~~~~l~~------~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L-------~~L~l~~c~~l~~lp~~i~~l~~ 330 (348)
+.+++.|.+ .+|. ++ .+|++|++++|.++.+|. +.. +| +.|++++ +.+..+|.++.++++
T Consensus 159 l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~ 231 (571)
T 3cvr_A 159 PTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDP 231 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCT
T ss_pred CCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCC
Confidence 344555544 4565 55 789999999998888888 655 67 8999998 678889998888999
Q ss_pred CcEeeccCCCC
Q 043181 331 LHHLDNFVTFS 341 (348)
Q Consensus 331 L~~L~l~~~~~ 341 (348)
|+.|++++|..
T Consensus 232 L~~L~L~~N~l 242 (571)
T 3cvr_A 232 TCTIILEDNPL 242 (571)
T ss_dssp TEEEECCSSSC
T ss_pred CCEEEeeCCcC
Confidence 99999998843
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.72 E-value=3.8e-05 Score=71.59 Aligned_cols=102 Identities=21% Similarity=0.244 Sum_probs=58.4
Q ss_pred cccccCccccceeeeccCcccccccccchhHHHHhhhhccccee------eCCccccCCCCccEEecCCCCCccCchhhh
Q 043181 229 FEAIDGVKHLRTSLPISSRVVWDYSHLNRNVLFDLSLKLQCFRY------ELPSEIGDLKILRYLNFSDAQVETSPESVC 302 (348)
Q Consensus 229 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~ 302 (348)
++.+..+++|+.+...++... ..+ ....+++.|.+ .+| .++.+++|++|++++|.++.+|...
T Consensus 146 lp~~~~l~~L~~L~l~~N~l~-~lp--------~~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~- 214 (454)
T 1jl5_A 146 LPELQNSSFLKIIDVDNNSLK-KLP--------DLPPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLP- 214 (454)
T ss_dssp CCCCTTCTTCCEEECCSSCCS-CCC--------CCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCC-
T ss_pred CcccCCCCCCCEEECCCCcCc-ccC--------CCcccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCc-
Confidence 344566667777666554321 111 01224444444 344 5677777777777777776665432
Q ss_pred ccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 303 KLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 303 ~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
++|+.|++++| .+..+|. ++.+++|++|++++| .+..+|
T Consensus 215 --~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N-~l~~l~ 253 (454)
T 1jl5_A 215 --LSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNN-LLKTLP 253 (454)
T ss_dssp --TTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSS-CCSSCC
T ss_pred --CcccEEECcCC-cCCcccc-cCCCCCCCEEECCCC-cCCccc
Confidence 36667777663 5556663 666667777777666 455554
No 127
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.68 E-value=2.4e-05 Score=70.31 Aligned_cols=71 Identities=24% Similarity=0.297 Sum_probs=31.7
Q ss_pred CCccccCCCCccEEecCC-CCCccCchh-hhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSD-AQVETSPES-VCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLES 347 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~-~~~~~lp~~-~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp~ 347 (348)
+|..+....+|+.+++++ |.++.+|+. +..+++|+.|++++ +.+..+|.+ .+.+|+.|.+.++..++.+|+
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~-N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR-TRIHSLPSY--GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTT-SCCCCCCSS--SCTTCCEEECTTCTTCCCCCC
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCC-CCcCccChh--hhccchHhhhccCCCcCcCCC
Confidence 333333444455555442 334444432 34455555555554 345555532 233444444444444444443
No 128
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.68 E-value=6e-05 Score=72.78 Aligned_cols=67 Identities=28% Similarity=0.332 Sum_probs=31.3
Q ss_pred eCCccccCCCCccEEecCCCCCccC-chhhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETS-PESVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVT 339 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~ 339 (348)
.+|..++.+++|++|++++|.+..+ |..++.+++|+.|++++|.....+|.. ++++++|++|++++|
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 360 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSS
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCC
Confidence 3444444455555555555544443 334444555555555543333344332 444555555555544
No 129
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.67 E-value=0.0006 Score=60.74 Aligned_cols=138 Identities=9% Similarity=0.007 Sum_probs=77.7
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHHHhhhcCCCCchhH-HHHhcC----cccccccC
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEILGGLLHGKVDCIDW-EDVLNS----KAISCHYL 139 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~~~~~w-~~~l~~----~~~s~~~L 139 (348)
+|+.+++.+++......... ... .+...++...|+|+|+++..++..+....+...+ ..+.+. ....+..+
T Consensus 202 pl~~~e~~~~l~~~~~~~~~-~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 277 (350)
T 2qen_A 202 PFDKDTSVEFLKRGFREVNL-DVP---ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEEL 277 (350)
T ss_dssp CCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999988765322111 111 2467889999999999999988654321121111 111111 01112223
Q ss_pred ---chHHHHHHhHhccCCCCCccchhHHHHHHHHcCCCccCCCCchHHHHHHHHHHHHHhCCccceeCCCcceEe-echH
Q 043181 140 ---LPHLKRCFSYCSIFPEDCKFEEEELILLRMAQGFLRHENSEKPVEQLGHQYSGELQSRSHFRQSSSNVSRFA-MHDF 215 (348)
Q Consensus 140 ---~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~-mh~l 215 (348)
++..+..+..+|. + ..+...+........ - . ........+++.|.+.+++.... ..|. .|++
T Consensus 278 ~~~~~~~~~~l~~la~---g-~~~~~~l~~~~~~~~-~-~-----~~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~ 343 (350)
T 2qen_A 278 RRRSPRYVDILRAIAL---G-YNRWSLIRDYLAVKG-T-K-----IPEPRLYALLENLKKMNWIVEED---NTYKIADPV 343 (350)
T ss_dssp HHHCHHHHHHHHHHHT---T-CCSHHHHHHHHHHTT-C-C-----CCHHHHHHHHHHHHHTTSEEEET---TEEEESSHH
T ss_pred HhCChhHHHHHHHHHh---C-CCCHHHHHHHHHHHh-C-C-----CCHHHHHHHHHHHHhCCCEEecC---CEEEEecHH
Confidence 5667777777776 2 123344433322110 0 0 11244667899999999998753 2455 4677
Q ss_pred HHHHH
Q 043181 216 INDLA 220 (348)
Q Consensus 216 i~~~~ 220 (348)
++++.
T Consensus 344 ~~~~~ 348 (350)
T 2qen_A 344 VATVL 348 (350)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 130
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.64 E-value=0.0009 Score=59.69 Aligned_cols=135 Identities=10% Similarity=0.012 Sum_probs=77.5
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHHHhhhcCCCCchhHH-HHhcC----cc-----c
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEILGGLLHGKVDCIDWE-DVLNS----KA-----I 134 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~~~~~~~w~-~~l~~----~~-----~ 134 (348)
+|+.+++.+++......... ...+ ..+|...|+|+|+++..++..+....+...|. .+.+. .. .
T Consensus 208 ~l~~~e~~~~l~~~~~~~~~-~~~~-----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 281 (357)
T 2fna_A 208 PFSREEAIEFLRRGFQEADI-DFKD-----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENF 281 (357)
T ss_dssp CCCHHHHHHHHHHHHHHHTC-CCCC-----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCCc-----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888764321111 0111 17899999999999999987764332222221 11111 10 1
Q ss_pred cc--ccCchHHHHHHhHhccCCCCCccchhHHHHHHH-HcCCCccCCCCchHHHHHHHHHHHHHhCCccceeCCCcceEe
Q 043181 135 SC--HYLLPHLKRCFSYCSIFPEDCKFEEEELILLRM-AQGFLRHENSEKPVEQLGHQYSGELQSRSHFRQSSSNVSRFA 211 (348)
Q Consensus 135 s~--~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~-a~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~~~~~~~~~ 211 (348)
.+ ..+++..+..+..+|+ +. +...+..... ..|. .........++..|.+.++|.... ..|+
T Consensus 282 ~~~~~~l~~~~~~~l~~la~---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~ 346 (357)
T 2fna_A 282 LHGREIARKRYLNIMRTLSK---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYC 346 (357)
T ss_dssp HTTCGGGHHHHHHHHHHHTT---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEE
T ss_pred hhccccccHHHHHHHHHHHc---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEE
Confidence 11 1577888888888887 21 3333332110 1121 001244667899999999998754 2466
Q ss_pred -echHHHHHH
Q 043181 212 -MHDFINDLA 220 (348)
Q Consensus 212 -mh~li~~~~ 220 (348)
.|++++++.
T Consensus 347 f~~~~~~~~l 356 (357)
T 2fna_A 347 PSEPLISLAF 356 (357)
T ss_dssp ESSHHHHHHT
T ss_pred ecCHHHHHhh
Confidence 578888753
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.62 E-value=0.00013 Score=69.86 Aligned_cols=59 Identities=34% Similarity=0.403 Sum_probs=28.6
Q ss_pred CCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 280 DLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 280 ~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.+++|++|++++|.++.+|. .+++|+.|++++ +.+..+|. +. ++|++|++++| .+..+|
T Consensus 138 ~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp 196 (571)
T 3cvr_A 138 LPALLEYINADNNQLTMLPE---LPTSLEVLSVRN-NQLTFLPE-LP--ESLEALDVSTN-LLESLP 196 (571)
T ss_dssp CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCSCCCC-CC--TTCCEEECCSS-CCSSCC
T ss_pred cCccccEEeCCCCccCcCCC---cCCCcCEEECCC-CCCCCcch-hh--CCCCEEECcCC-CCCchh
Confidence 34455555555555555544 344555555554 33444544 33 44555555554 444444
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.59 E-value=7.2e-05 Score=69.73 Aligned_cols=67 Identities=25% Similarity=0.388 Sum_probs=40.3
Q ss_pred eCCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCCCCCCCC
Q 043181 273 ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 273 ~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.+| .++.+++|++|++++|.++.+|..+ .+|++|++++ +.+..+| +++++++|++|++++| .+..+|
T Consensus 145 ~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~-n~l~~l~-~~~~l~~L~~L~l~~N-~l~~l~ 211 (454)
T 1jl5_A 145 KLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGN-NQLEELP-ELQNLPFLTAIYADNN-SLKKLP 211 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCS-SCCSSCC-CCTTCTTCCEEECCSS-CCSSCC
T ss_pred CCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcC-CcCCcCc-cccCCCCCCEEECCCC-cCCcCC
Confidence 345 4666667777777776666665533 3566666666 3555566 4666666666666666 444444
No 133
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.57 E-value=8.1e-05 Score=66.14 Aligned_cols=70 Identities=19% Similarity=0.276 Sum_probs=59.3
Q ss_pred CCccccCCCCccEEecCCCCCc-cCchhhhccCCCCEeeccCCCccc--hhHHHhcccccCcEeeccCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVE-TSPESVCKLHNLETLKLQNCNRLQ--KLFADIGNLNNLHHLDNFVTFSLE 343 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~-~lp~~~~~l~~L~~L~l~~c~~l~--~lp~~i~~l~~L~~L~l~~~~~l~ 343 (348)
+|..+..+++|++|++++|.++ ..|..++.+++|+.|++++|..+. .+|..+.++++|++|++++|..+.
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 5667888999999999999887 578889999999999999986676 488888899999999999984443
No 134
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.53 E-value=9.5e-05 Score=67.23 Aligned_cols=66 Identities=21% Similarity=0.206 Sum_probs=54.1
Q ss_pred CCccccCCCCccEEecCCCCCcc-----Cchhh--hccCCCCEeeccCCCccch-----hHHHh-cccccCcEeeccCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVET-----SPESV--CKLHNLETLKLQNCNRLQK-----LFADI-GNLNNLHHLDNFVTF 340 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~-----lp~~~--~~l~~L~~L~l~~c~~l~~-----lp~~i-~~l~~L~~L~l~~~~ 340 (348)
+|..+..+++|++|++++|.++. +|..+ +++++|+.|++++| .+.. +|..+ .++++|++|++++|.
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 46677889999999999999874 46777 44899999999995 5655 99888 678999999999994
No 135
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.52 E-value=0.00012 Score=62.76 Aligned_cols=63 Identities=22% Similarity=0.191 Sum_probs=41.4
Q ss_pred cCCCCccEEecCCCCCccC---chhhhccCCCCEeeccCCCccchhHHHhcccc--cCcEeeccCCCCCC
Q 043181 279 GDLKILRYLNFSDAQVETS---PESVCKLHNLETLKLQNCNRLQKLFADIGNLN--NLHHLDNFVTFSLE 343 (348)
Q Consensus 279 ~~l~~L~~l~l~~~~~~~l---p~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~--~L~~L~l~~~~~l~ 343 (348)
.++++|+.|+|++|.++.+ |..++.+++|+.|+|++ +.+..+. ++..+. +|+.|++++|+-.+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSER-ELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGG-GGGGGTTSCCSEEECTTSTTGG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCch-hhhhcccCCcceEEccCCcCcc
Confidence 3456777777777776654 34556777777777777 5666663 355555 77777777775433
No 136
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=97.47 E-value=0.00012 Score=66.65 Aligned_cols=65 Identities=18% Similarity=0.221 Sum_probs=54.1
Q ss_pred cccCCCCccEEecCCCCC-----ccCchhhhccCCCCEeeccCCCccch-----hHHHh--cccccCcEeeccCCCCCC
Q 043181 277 EIGDLKILRYLNFSDAQV-----ETSPESVCKLHNLETLKLQNCNRLQK-----LFADI--GNLNNLHHLDNFVTFSLE 343 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~-----~~lp~~~~~l~~L~~L~l~~c~~l~~-----lp~~i--~~l~~L~~L~l~~~~~l~ 343 (348)
.+..+++|++|++++|.+ ..+|..+..+++|+.|++++|. +.. +|..+ +++++|++|++++| .+.
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~ 287 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIE 287 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCB
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC-cCC
Confidence 778899999999999998 5688999999999999999964 543 57777 44899999999999 444
No 137
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.46 E-value=8e-05 Score=72.12 Aligned_cols=58 Identities=17% Similarity=0.071 Sum_probs=49.6
Q ss_pred cCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCCC
Q 043181 279 GDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 279 ~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~~ 340 (348)
..+++|++|++++|.++.+|. .+++|+.|++++ +.+..+|.+++++++|+.|++++|+
T Consensus 238 ~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~-N~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCS-SCCCSCCGGGGGSCTTCEEECCSCC
T ss_pred CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCC-CCCCcCCHHHhhccccCEEEecCCC
Confidence 456788888999888888887 668899999998 5788999999999999999999984
No 138
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.42 E-value=0.00035 Score=61.75 Aligned_cols=83 Identities=7% Similarity=-0.030 Sum_probs=48.3
Q ss_pred CCCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHHHhhhcC------CC--CchhHHHHhcCcccc
Q 043181 64 KKWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEILGGLLHG------KV--DCIDWEDVLNSKAIS 135 (348)
Q Consensus 64 ~~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~L~~------~~--~~~~w~~~l~~~~~s 135 (348)
.+++.++...++...+..... ... .+....++.+++|.|-.+..+...... .. +.+....+.......
T Consensus 166 ~~~~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 166 EYYTPEELAQGVMRDARLLGV-RIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 378899999998887644322 122 356788999999999877665433321 11 233344444433344
Q ss_pred cccCchHHHHHHhHh
Q 043181 136 CHYLLPHLKRCFSYC 150 (348)
Q Consensus 136 ~~~L~~~~k~~fl~~ 150 (348)
+..++...+..+..+
T Consensus 242 ~~~l~~~e~~~i~~~ 256 (324)
T 1hqc_A 242 ELGLEKRDREILEVL 256 (324)
T ss_dssp TTCCCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHH
Confidence 455666555555443
No 139
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.32 E-value=0.00019 Score=69.40 Aligned_cols=72 Identities=28% Similarity=0.220 Sum_probs=52.6
Q ss_pred hhccccee------eCCccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccC
Q 043181 265 LKLQCFRY------ELPSEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFV 338 (348)
Q Consensus 265 ~~~~~l~~------~~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~ 338 (348)
.+++.|.+ .+|. .+++|++|++++|.++.+|. .+++|+.|++++ +.+..+|. .+++|+.|++++
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~-N~l~~l~~---~l~~L~~L~L~~ 130 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFS-NPLTHLPA---LPSGLCKLWIFG 130 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECS-CCCCCCCC---CCTTCCEEECCS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcC-CcCCCCCC---CCCCcCEEECCC
Confidence 34555544 4554 57889999999999999987 778899999998 57888876 456677777766
Q ss_pred CCCCCCCCC
Q 043181 339 TFSLESLES 347 (348)
Q Consensus 339 ~~~l~~lp~ 347 (348)
| .+..+|.
T Consensus 131 N-~l~~lp~ 138 (622)
T 3g06_A 131 N-QLTSLPV 138 (622)
T ss_dssp S-CCSCCCC
T ss_pred C-CCCcCCC
Confidence 6 5555553
No 140
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.17 E-value=0.00031 Score=56.10 Aligned_cols=66 Identities=12% Similarity=0.280 Sum_probs=50.7
Q ss_pred cccCCCCccEEecCCCC-Ccc-Cchhhhcc----CCCCEeeccCCCccch--hHHHhcccccCcEeeccCCCCCC
Q 043181 277 EIGDLKILRYLNFSDAQ-VET-SPESVCKL----HNLETLKLQNCNRLQK--LFADIGNLNNLHHLDNFVTFSLE 343 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~-~~~-lp~~~~~l----~~L~~L~l~~c~~l~~--lp~~i~~l~~L~~L~l~~~~~l~ 343 (348)
.+..+++|+.|+|++|. ++. --..++.+ ++|+.|+|++|+.++. +- .+.++++|++|++++|+.+.
T Consensus 80 ~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 80 HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEESCTTCC
T ss_pred HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCCCCCCC
Confidence 35678999999999996 663 22445554 4799999999988765 32 36788999999999998665
No 141
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.16 E-value=0.00029 Score=63.10 Aligned_cols=63 Identities=22% Similarity=0.179 Sum_probs=35.3
Q ss_pred CccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCCCCCCCC
Q 043181 283 ILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 283 ~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~~l~~lp 346 (348)
.++.|++++|.++++|+.+....+|+.+++.+++.++.+|.+ +..+++|++|++++| .+..+|
T Consensus 155 ~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp 218 (350)
T 4ay9_X 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP 218 (350)
T ss_dssp SCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC
T ss_pred hhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccC
Confidence 355555555555555555555555555555555555555543 355555666666555 555554
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.99 E-value=0.00095 Score=53.26 Aligned_cols=70 Identities=13% Similarity=0.243 Sum_probs=49.8
Q ss_pred CCccccCCCCccEEecCCCCCcc-CchhhhccCCCCEeeccCCCccchhH-HHhccc----ccCcEeeccCCCCCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVET-SPESVCKLHNLETLKLQNCNRLQKLF-ADIGNL----NNLHHLDNFVTFSLE 343 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~-lp~~~~~l~~L~~L~l~~c~~l~~lp-~~i~~l----~~L~~L~l~~~~~l~ 343 (348)
+|.....-.+|+.||++++.++. --..+..+++|+.|+|++|..++.-- ..+..+ ++|++|++++|.++.
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT 128 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT 128 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence 34333233579999999999873 23557899999999999998765421 123332 479999999997654
No 143
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.98 E-value=0.00074 Score=60.74 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=29.9
Q ss_pred CccEEecCCCCCccCc-hhhh----cc-CCCCEeeccCCCccch-----hHHHhcccc-cCcEeeccCC
Q 043181 283 ILRYLNFSDAQVETSP-ESVC----KL-HNLETLKLQNCNRLQK-----LFADIGNLN-NLHHLDNFVT 339 (348)
Q Consensus 283 ~L~~l~l~~~~~~~lp-~~~~----~l-~~L~~L~l~~c~~l~~-----lp~~i~~l~-~L~~L~l~~~ 339 (348)
+|++|++++|.++..+ ..+. .. ++|+.|++++ +.+.. +|..+..+. +|++|++++|
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA-NLLGLKSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC-CCCChhHHHHHHHHHhcCCCCceEEECcCC
Confidence 5666666666655332 2222 23 3666666666 34444 555555533 5666666665
No 144
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.88 E-value=0.026 Score=50.63 Aligned_cols=128 Identities=9% Similarity=-0.058 Sum_probs=70.0
Q ss_pred CCChHHHHHHHHHhhc---CCCCCCcChhHHHHHHHHHHHcC---CCc-hhHHHHHhhhc-----CCC--CchhHHHHhc
Q 043181 65 KWSDDDCLCVFTQRSS---RRTDFNMHMHLKEIGEKIVKKCN---GLP-LASEILGGLLH-----GKV--DCIDWEDVLN 130 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~---~~~~~~~~~~~~~~~~~i~~~c~---GlP-Lal~~ig~~L~-----~~~--~~~~w~~~l~ 130 (348)
+++.++..+++...+. .... ..+ +..+.+++.++ |.| .++..+..... +.. +.+.+..++.
T Consensus 200 ~l~~~~~~~il~~~~~~~~~~~~--~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 200 PYTAPQLRDILETRAEEAFNPGV--LDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTT--BCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhccCCC--CCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 7888999999988742 2222 222 34556777776 999 33333322211 211 3455555554
Q ss_pred Ccc-----cccccCchHHHHHHhHhc-cCCCCCccchhHHHHHH----HHcCCCccCCCCchHHHHHHHHHHHHHhCCcc
Q 043181 131 SKA-----ISCHYLLPHLKRCFSYCS-IFPEDCKFEEEELILLR----MAQGFLRHENSEKPVEQLGHQYSGELQSRSHF 200 (348)
Q Consensus 131 ~~~-----~s~~~L~~~~k~~fl~~~-~fp~~~~i~~~~li~~w----~a~g~~~~~~~~~~~~~~~~~~l~~L~~~sll 200 (348)
... -++..++...+..+..++ .+-.+..+....+.+.. ...| .. ......+..+++.|...+++
T Consensus 275 ~~~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~l~~L~~~gli 348 (387)
T 2v1u_A 275 EIERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLG-LE-----HVTLRRVSGIISELDMLGIV 348 (387)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTT-CC-----CCCHHHHHHHHHHHHHTTSE
T ss_pred HHhhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcC-CC-----CCCHHHHHHHHHHHHhCCCe
Confidence 432 445778887777666555 33222234444333322 1122 11 11245677889999999999
Q ss_pred cee
Q 043181 201 RQS 203 (348)
Q Consensus 201 ~~~ 203 (348)
+..
T Consensus 349 ~~~ 351 (387)
T 2v1u_A 349 KSR 351 (387)
T ss_dssp EEE
T ss_pred EEE
Confidence 973
No 145
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.85 E-value=0.00023 Score=66.06 Aligned_cols=65 Identities=23% Similarity=0.324 Sum_probs=50.4
Q ss_pred CCccccCCCCccEEecCCCCCccC-chhhhc-----cCCCCEeeccCCCccc-----hhHHHhcccccCcEeeccCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETS-PESVCK-----LHNLETLKLQNCNRLQ-----KLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~l-p~~~~~-----l~~L~~L~l~~c~~l~-----~lp~~i~~l~~L~~L~l~~~ 339 (348)
++..+..+++|++|++++|.++.. +..+.. .++|+.|++++| .+. .+|..+..+++|++|++++|
T Consensus 333 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N 408 (461)
T 1z7x_W 333 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN 408 (461)
T ss_dssp HHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred HHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC
Confidence 455566778899999999987643 344443 678999999986 555 78888888999999999988
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.72 E-value=0.0018 Score=55.42 Aligned_cols=63 Identities=22% Similarity=0.262 Sum_probs=47.6
Q ss_pred CCccccCCCCccEEecCCCCCccCchhhhccC--CCCEeeccCCCccchhH-------HHhcccccCcEeecc
Q 043181 274 LPSEIGDLKILRYLNFSDAQVETSPESVCKLH--NLETLKLQNCNRLQKLF-------ADIGNLNNLHHLDNF 337 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~--~L~~L~l~~c~~l~~lp-------~~i~~l~~L~~L~l~ 337 (348)
+|..+..+++|++|+|++|.++.+ ..+..+. +|+.|+|.+++--..+| .-+..+++|+.||-.
T Consensus 188 l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 188 MSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred chhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCc
Confidence 345566899999999999999877 4466666 99999999954333344 236789999998643
No 147
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=96.67 E-value=0.0014 Score=59.01 Aligned_cols=69 Identities=14% Similarity=0.174 Sum_probs=51.0
Q ss_pred ccccCCC-CccEEecCCCCCccC-chhhhcc-----CCCCEeeccCCCccchh-HHHh----ccc-ccCcEeeccCCCCC
Q 043181 276 SEIGDLK-ILRYLNFSDAQVETS-PESVCKL-----HNLETLKLQNCNRLQKL-FADI----GNL-NNLHHLDNFVTFSL 342 (348)
Q Consensus 276 ~~~~~l~-~L~~l~l~~~~~~~l-p~~~~~l-----~~L~~L~l~~c~~l~~l-p~~i----~~l-~~L~~L~l~~~~~l 342 (348)
..+..++ +|++|++++|.++.. +..+..+ ++|+.|++++|. +... +..+ ..+ ++|++|++++| .+
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l 121 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDLGWN-DF 121 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEECCSS-CG
T ss_pred HHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEECcCC-cC
Confidence 4567787 899999999998864 6667775 899999999954 5543 4433 344 78999999999 55
Q ss_pred CCCC
Q 043181 343 ESLE 346 (348)
Q Consensus 343 ~~lp 346 (348)
...+
T Consensus 122 ~~~~ 125 (362)
T 3goz_A 122 SSKS 125 (362)
T ss_dssp GGSC
T ss_pred CcHH
Confidence 5443
No 148
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=96.65 E-value=0.00048 Score=63.95 Aligned_cols=59 Identities=15% Similarity=-0.019 Sum_probs=37.2
Q ss_pred CCCCccEEecCCCCCcc-----CchhhhccCCCCEeeccCCCccchh-HHHhcc-----cccCcEeeccCC
Q 043181 280 DLKILRYLNFSDAQVET-----SPESVCKLHNLETLKLQNCNRLQKL-FADIGN-----LNNLHHLDNFVT 339 (348)
Q Consensus 280 ~l~~L~~l~l~~~~~~~-----lp~~~~~l~~L~~L~l~~c~~l~~l-p~~i~~-----l~~L~~L~l~~~ 339 (348)
.+++|++|++++|.++. +|..+..+++|+.|++++| .+... +..+.. .++|++|++++|
T Consensus 254 ~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 323 (461)
T 1z7x_W 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC 323 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred CCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCC
Confidence 46677777777777665 5666777777777777774 44322 222222 247777777777
No 149
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.59 E-value=0.0061 Score=50.74 Aligned_cols=47 Identities=4% Similarity=-0.086 Sum_probs=34.4
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHHHhh
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEILGGL 115 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig~~ 115 (348)
+++.++..+++...+..... ... .+....+++.|+|.|..+..+...
T Consensus 184 ~l~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 184 ALDVEQIRHQLEHILNEEHI-AHE---PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp CCCHHHHHHHHHHHHHHTTC-CBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 89999999999987644322 122 255778999999999988776543
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.56 E-value=0.00095 Score=60.36 Aligned_cols=65 Identities=11% Similarity=0.083 Sum_probs=49.6
Q ss_pred CCccccCCCCccEEecCCCCCcc-----CchhhhccCCCCEeeccCCCccc-----hhHHHhcccccCcEeeccCC
Q 043181 274 LPSEIGDLKILRYLNFSDAQVET-----SPESVCKLHNLETLKLQNCNRLQ-----KLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 274 ~p~~~~~l~~L~~l~l~~~~~~~-----lp~~~~~l~~L~~L~l~~c~~l~-----~lp~~i~~l~~L~~L~l~~~ 339 (348)
++..+...++|++|+|++|.+.. ++..+...++|+.|+|++| .++ .++..+...++|++|++++|
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N 249 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN 249 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC
Confidence 33445677889999999998763 4666777889999999985 454 45556667788999999988
No 151
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.33 E-value=0.0046 Score=59.24 Aligned_cols=62 Identities=26% Similarity=0.175 Sum_probs=48.2
Q ss_pred ccCCCCccEEecCCCC--Cc--cCchhhhccCCCCEeeccCCCccchhHHHhcccccCcEeeccCC
Q 043181 278 IGDLKILRYLNFSDAQ--VE--TSPESVCKLHNLETLKLQNCNRLQKLFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~--~~--~lp~~~~~l~~L~~L~l~~c~~l~~lp~~i~~l~~L~~L~l~~~ 339 (348)
...+++|+.|+++++. +. .++.-+..+++|+.|++.+|..+..+|..+.++++|++|++..|
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBC
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccc
Confidence 3467799999999886 22 23333456799999999998888889998999999999986554
No 152
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=96.06 E-value=0.0049 Score=59.02 Aligned_cols=61 Identities=11% Similarity=0.004 Sum_probs=35.0
Q ss_pred CCCCccEEecCCCCCccCchhhhccCCCCEeeccCC--------------------------CccchhHHHhcccccCcE
Q 043181 280 DLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNC--------------------------NRLQKLFADIGNLNNLHH 333 (348)
Q Consensus 280 ~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c--------------------------~~l~~lp~~i~~l~~L~~ 333 (348)
.+++|+.|+++++.+..+|..+..+++|+.|++.++ .....+|..+..+++|++
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 445555555555555445544444444444444321 234556666777788888
Q ss_pred eeccCCC
Q 043181 334 LDNFVTF 340 (348)
Q Consensus 334 L~l~~~~ 340 (348)
|++++|.
T Consensus 298 L~Ls~~~ 304 (592)
T 3ogk_B 298 LDLLYAL 304 (592)
T ss_dssp EEETTCC
T ss_pred EecCCCc
Confidence 8888774
No 153
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.94 E-value=0.03 Score=45.70 Aligned_cols=44 Identities=5% Similarity=-0.136 Sum_probs=29.5
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHH
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEIL 112 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~i 112 (348)
+++.++..+++...+...+.. .. .+....+++.++|.|..+..+
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~~l~~~~~g~~r~l~~~ 203 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVK-IT---EDGLEALIYISGGDFRKAINA 203 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCC-BC---HHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 788999999988876432211 11 245677888999999865443
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.83 E-value=0.011 Score=47.66 Aligned_cols=62 Identities=16% Similarity=0.144 Sum_probs=45.4
Q ss_pred cccCCCCccEEecCCCCCcc-----CchhhhccCCCCEeec--cCCCccch-----hHHHhcccccCcEeeccCC
Q 043181 277 EIGDLKILRYLNFSDAQVET-----SPESVCKLHNLETLKL--QNCNRLQK-----LFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~~~-----lp~~~~~l~~L~~L~l--~~c~~l~~-----lp~~i~~l~~L~~L~l~~~ 339 (348)
.+.....|++|++++|.+.. +...+...++|+.|++ ++ +.++. +...+...++|++|++++|
T Consensus 88 ~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 88 MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 34455678899999988763 5667777788999999 65 45543 5555666788999999887
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=95.40 E-value=0.017 Score=52.04 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=50.1
Q ss_pred CCCCccEEecCCCCCcc-----CchhhhccCCCCEeeccCCCccc-----hhHHHhcccccCcEeeccCCCCCC
Q 043181 280 DLKILRYLNFSDAQVET-----SPESVCKLHNLETLKLQNCNRLQ-----KLFADIGNLNNLHHLDNFVTFSLE 343 (348)
Q Consensus 280 ~l~~L~~l~l~~~~~~~-----lp~~~~~l~~L~~L~l~~c~~l~-----~lp~~i~~l~~L~~L~l~~~~~l~ 343 (348)
...+|+.|++++|.++. ++..+...++|++|+|++| .++ .++..+...++|+.|++++| .+.
T Consensus 153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~ 224 (372)
T 3un9_A 153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLELLAAQLDRNRQLQELNVAYN-GAG 224 (372)
T ss_dssp TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTS-SCHHHHHHHHHHHGGGCSCCCEEECCSS-CCC
T ss_pred cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCC-CCCcHHHHHHHHHHhcCCCcCeEECCCC-CCC
Confidence 45789999999999863 5666788999999999995 454 35667788889999999999 443
No 156
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.39 E-value=0.042 Score=52.44 Aligned_cols=38 Identities=16% Similarity=-0.053 Sum_probs=17.6
Q ss_pred cCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCC
Q 043181 279 GDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCN 316 (348)
Q Consensus 279 ~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~ 316 (348)
..+.+|+.++++++....+|..+..+++|+.|++++|.
T Consensus 267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred hccccccccCccccchhHHHHHHhhcCCCcEEecCCCc
Confidence 34444444444444333444444445555555555443
No 157
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.28 E-value=0.013 Score=53.27 Aligned_cols=132 Identities=11% Similarity=-0.047 Sum_probs=72.5
Q ss_pred CCChHHHHHHHHHhh---cCCCCCCcChhHHHHHHHHHHHcC------CCchhHHHHHhh-h-----cCCC--CchhHHH
Q 043181 65 KWSDDDCLCVFTQRS---SRRTDFNMHMHLKEIGEKIVKKCN------GLPLASEILGGL-L-----HGKV--DCIDWED 127 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a---~~~~~~~~~~~~~~~~~~i~~~c~------GlPLal~~ig~~-L-----~~~~--~~~~w~~ 127 (348)
+++.++++++|...+ +.... .. .+....+++.|+ |.|..+..+... . .+.. +.+.+..
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~~~~--~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~ 288 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLRDTV--WE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRK 288 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTS--CC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCC--CC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 677788888886543 32211 11 356778888899 999655444321 1 1111 2233443
Q ss_pred HhcC------cccccccCchHHHHHHhHhccCC--CCCccchhHHHHHHH--HcCCCccCCCCchHHHHHHHHHHHHHhC
Q 043181 128 VLNS------KAISCHYLLPHLKRCFSYCSIFP--EDCKFEEEELILLRM--AQGFLRHENSEKPVEQLGHQYSGELQSR 197 (348)
Q Consensus 128 ~l~~------~~~s~~~L~~~~k~~fl~~~~fp--~~~~i~~~~li~~w~--a~g~~~~~~~~~~~~~~~~~~l~~L~~~ 197 (348)
+... ....+..||...+.++..++.+. .+..++...+...+. +...... . .........++..|.+.
T Consensus 289 ~~~~~~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~l~~L~~~ 365 (412)
T 1w5s_A 289 AVSENEAASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-K--PRGYTQYHIYLKHLTSL 365 (412)
T ss_dssp HHHHC------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-C--CCCHHHHHHHHHHHHHT
T ss_pred HHHHHhccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-C--CCCHHHHHHHHHHHHhC
Confidence 3322 23566789999999888888653 222344444433331 1000110 0 11124456789999999
Q ss_pred CccceeC
Q 043181 198 SHFRQSS 204 (348)
Q Consensus 198 sll~~~~ 204 (348)
+++....
T Consensus 366 gli~~~~ 372 (412)
T 1w5s_A 366 GLVDAKP 372 (412)
T ss_dssp TSEEEEC
T ss_pred CCEEeec
Confidence 9998743
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.25 E-value=0.017 Score=43.50 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=25.4
Q ss_pred CCccEEecCCCCCccCchh-hhccCCCCEeeccCC
Q 043181 282 KILRYLNFSDAQVETSPES-VCKLHNLETLKLQNC 315 (348)
Q Consensus 282 ~~L~~l~l~~~~~~~lp~~-~~~l~~L~~L~l~~c 315 (348)
.+|++|+|++|.|+.+|+. +..+++|+.|+|.++
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 3578888888888887764 466778888888773
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.09 E-value=0.031 Score=44.88 Aligned_cols=62 Identities=10% Similarity=0.108 Sum_probs=48.9
Q ss_pred cccCCCCccEEecCCCCCc-----cCchhhhccCCCCEeeccCCCccch-----hHHHhcccccCcEeec--cCC
Q 043181 277 EIGDLKILRYLNFSDAQVE-----TSPESVCKLHNLETLKLQNCNRLQK-----LFADIGNLNNLHHLDN--FVT 339 (348)
Q Consensus 277 ~~~~l~~L~~l~l~~~~~~-----~lp~~~~~l~~L~~L~l~~c~~l~~-----lp~~i~~l~~L~~L~l--~~~ 339 (348)
.+...++|++|+|++|.+. .+...+...++|+.|+|++| .++. +...+...++|++|++ ++|
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N 133 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQ 133 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSS
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCC
Confidence 3455678999999999986 35566677789999999984 5554 6677888889999999 667
No 160
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=95.08 E-value=0.012 Score=56.20 Aligned_cols=60 Identities=18% Similarity=0.151 Sum_probs=40.7
Q ss_pred CCCCccEEecCCC-CCcc--CchhhhccCCCCEeeccCCCccc-----hhHHHhcccccCcEeeccCCC
Q 043181 280 DLKILRYLNFSDA-QVET--SPESVCKLHNLETLKLQNCNRLQ-----KLFADIGNLNNLHHLDNFVTF 340 (348)
Q Consensus 280 ~l~~L~~l~l~~~-~~~~--lp~~~~~l~~L~~L~l~~c~~l~-----~lp~~i~~l~~L~~L~l~~~~ 340 (348)
.+++|+.|++++| .++. ++..+..+++|+.|++++|. +. .++.-...+++|+.|++++|.
T Consensus 128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLA 195 (594)
T ss_dssp HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCC
T ss_pred hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccC
Confidence 5778888888887 4553 55555578888888888865 32 233333466788888888774
No 161
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.45 E-value=0.02 Score=51.47 Aligned_cols=127 Identities=10% Similarity=-0.045 Sum_probs=66.6
Q ss_pred CCChHHHHHHHHHhhc---CCCCCCcChhHHHHHHHHHHHcC---CCch-hHHHHHhhh--c-C--CCCchhHHHHhcCc
Q 043181 65 KWSDDDCLCVFTQRSS---RRTDFNMHMHLKEIGEKIVKKCN---GLPL-ASEILGGLL--H-G--KVDCIDWEDVLNSK 132 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~---~~~~~~~~~~~~~~~~~i~~~c~---GlPL-al~~ig~~L--~-~--~~~~~~w~~~l~~~ 132 (348)
+++.++..+++...+. .... ..+ +..+.+++.|+ |.|. |+..+.... . + .-+.+.+..+++..
T Consensus 196 ~l~~~~~~~il~~~~~~~~~~~~--~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 196 PYDAEQLKFILSKYAEYGLIKGT--YDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp CCCHHHHHHHHHHHHHHTSCTTS--CCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCC--cCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 7889999999998753 2222 222 34556666776 8776 443332221 1 1 12355666665543
Q ss_pred c-----cccccCchHHHHHHhHhccCCCCCccchhHHHHHHHHcCCCccCCCCchHHHHHHHHHHHHHhCCcccee
Q 043181 133 A-----ISCHYLLPHLKRCFSYCSIFPEDCKFEEEELILLRMAQGFLRHENSEKPVEQLGHQYSGELQSRSHFRQS 203 (348)
Q Consensus 133 ~-----~s~~~L~~~~k~~fl~~~~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~~~~~~l~~L~~~sll~~~ 203 (348)
. .++..|+...+..+..++....+..+. +.....-...| .. ........+++..|.+++++...
T Consensus 271 ~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~~-----~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 271 EQERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-QK-----PLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-CC-----CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-CC-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 2 445677777776666555511100110 11111111122 11 11235567789999999999873
No 162
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.43 E-value=0.043 Score=47.91 Aligned_cols=45 Identities=24% Similarity=0.073 Sum_probs=30.2
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCch-hHHHHH
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPL-ASEILG 113 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPL-al~~ig 113 (348)
+++.++..+++...+...+.. .. .+....+++.|+|.|. |+..+.
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~-~~---~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVK-YT---NDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCC-BC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 789999999998866322211 11 2557789999999995 444443
No 163
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=94.20 E-value=0.03 Score=50.19 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=45.0
Q ss_pred CCCCccEEecCCCCCcc-Cchhh---hccCCCCEeeccCCCccch-----hHHHhcccccCcEeeccCC
Q 043181 280 DLKILRYLNFSDAQVET-SPESV---CKLHNLETLKLQNCNRLQK-----LFADIGNLNNLHHLDNFVT 339 (348)
Q Consensus 280 ~l~~L~~l~l~~~~~~~-lp~~~---~~l~~L~~L~l~~c~~l~~-----lp~~i~~l~~L~~L~l~~~ 339 (348)
.+++|++|++++|.+.. .+..+ ..+++|++|+|+. +.++. ++..+.++++|+.|++++|
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 47899999999988753 23333 2578999999987 45654 6666778899999999988
No 164
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.08 E-value=0.55 Score=41.22 Aligned_cols=42 Identities=10% Similarity=0.192 Sum_probs=27.6
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHH
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASE 110 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 110 (348)
+++.++...++...+..... ... .+....+++.+.|.|-.+.
T Consensus 183 ~~~~~e~~~il~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~l~ 224 (338)
T 3pfi_A 183 FYKDSELALILQKAALKLNK-TCE---EKAALEIAKRSRSTPRIAL 224 (338)
T ss_dssp CCCHHHHHHHHHHHHHHTTC-EEC---HHHHHHHHHTTTTCHHHHH
T ss_pred CcCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHHCcCHHHHH
Confidence 78888888888876633221 111 3556778888999985443
No 165
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.87 E-value=0.085 Score=47.35 Aligned_cols=45 Identities=20% Similarity=0.173 Sum_probs=30.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCC-CeeEEEEcCCCCCHHHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF-HLETWVYLFEDFDVFRITKTMLQSI 48 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~~~~~~~~l~~~il~~l 48 (348)
.|+||||+|+++++ ...... ...++++.....+...+.+.++..+
T Consensus 53 ~G~GKTtl~~~l~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l 98 (389)
T 1fnn_A 53 PGTGKTVTLRKLWE--LYKDKTTARFVYINGFIYRNFTAIIGEIARSL 98 (389)
T ss_dssp TTSSHHHHHHHHHH--HHTTSCCCEEEEEETTTCCSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH--HHhhhcCeeEEEEeCccCCCHHHHHHHHHHHh
Confidence 69999999999998 444332 2456777666555666666655544
No 166
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=93.79 E-value=0.07 Score=46.92 Aligned_cols=67 Identities=15% Similarity=0.121 Sum_probs=48.8
Q ss_pred ccccCCCCccEEecCCCCCccCch-hhhccCCCC-EeeccCCCccchhHH-HhcccccCcEeeccCCCCCCCCC
Q 043181 276 SEIGDLKILRYLNFSDAQVETSPE-SVCKLHNLE-TLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVTFSLESLE 346 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~lp~-~~~~l~~L~-~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~~~l~~lp 346 (348)
..+..+.+|+.+++.++ ++.+++ .+..+.+|+ .+++.+ .+..+++ .+.++++|+.+++.++ .+..++
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~ 313 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD-KITTLG 313 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS-CCCEEC
T ss_pred hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC-ccCccc
Confidence 34677888888888887 776654 467788888 888876 6677763 5778888888888766 555554
No 167
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.49 E-value=0.027 Score=50.49 Aligned_cols=29 Identities=21% Similarity=0.516 Sum_probs=20.6
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCC---eeEEEEc
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFH---LETWVYL 31 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~---~~~wv~~ 31 (348)
.+|+||||||+++++ .....+. ..+|++.
T Consensus 53 ~~G~GKTtl~~~l~~--~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 53 LTGTGKTAVVKFVLS--KLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CTTSSHHHHHHHHHH--HHHHHTCSSCEEEEEEH
T ss_pred CCCCCHHHHHHHHHH--HHHHHhcCCceEEEEEC
Confidence 479999999999998 4544332 3556664
No 168
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.17 E-value=0.053 Score=43.95 Aligned_cols=28 Identities=36% Similarity=0.414 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
+|+||||||+++++ .........++++.
T Consensus 63 ~GtGKT~la~~i~~--~~~~~~~~~~~~~~ 90 (202)
T 2w58_A 63 FGVGKTYLLAAIAN--ELAKRNVSSLIVYV 90 (202)
T ss_dssp TTSSHHHHHHHHHH--HHHTTTCCEEEEEH
T ss_pred CCCCHHHHHHHHHH--HHHHcCCeEEEEEh
Confidence 69999999999999 44443344566654
No 169
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=92.73 E-value=0.073 Score=46.82 Aligned_cols=56 Identities=21% Similarity=0.269 Sum_probs=48.6
Q ss_pred CCCccEEecCCCCCccCch-hhhccCCCCEeeccCCCccchhHHH-hcccccCc-EeeccC
Q 043181 281 LKILRYLNFSDAQVETSPE-SVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLH-HLDNFV 338 (348)
Q Consensus 281 l~~L~~l~l~~~~~~~lp~-~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~-~L~l~~ 338 (348)
+.+|+.+++++|.++++|+ .+..+++|+.+++.+ .+..++.. +.++.+|+ .+++.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEEECT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc--ccceehHHHhhCChhccEEEEEcc
Confidence 7899999999999999886 478899999999997 38888874 78899999 998876
No 170
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.95 E-value=0.057 Score=42.69 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|.||||+|+.+.+
T Consensus 11 ~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 11 GSSAGKSGIVRCLQS 25 (178)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999988
No 171
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=91.36 E-value=0.1 Score=43.22 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=20.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
.|+||||+|+++++ ..........|++..
T Consensus 61 ~G~GKT~la~~l~~--~~~~~~~~~~~~~~~ 89 (242)
T 3bos_A 61 VKSGRTHLIHAACA--RANELERRSFYIPLG 89 (242)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTCCEEEEEGG
T ss_pred CCCCHHHHHHHHHH--HHHHcCCeEEEEEHH
Confidence 69999999999998 443333345566553
No 172
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.60 E-value=0.25 Score=36.93 Aligned_cols=53 Identities=15% Similarity=0.124 Sum_probs=43.1
Q ss_pred cEEecCCCCCc--cCchhhhccCCCCEeeccCCCccchhHHH-hcccccCcEeeccCCC
Q 043181 285 RYLNFSDAQVE--TSPESVCKLHNLETLKLQNCNRLQKLFAD-IGNLNNLHHLDNFVTF 340 (348)
Q Consensus 285 ~~l~l~~~~~~--~lp~~~~~l~~L~~L~l~~c~~l~~lp~~-i~~l~~L~~L~l~~~~ 340 (348)
..++-+++.++ .+|..+. .+|+.|+|++ +.+..||.+ +..+++|+.|+|++|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecCCC
Confidence 46788888888 8886543 4799999998 789999876 5778899999999884
No 173
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.51 E-value=0.35 Score=42.03 Aligned_cols=45 Identities=11% Similarity=-0.084 Sum_probs=30.6
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHHH
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEILG 113 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig 113 (348)
+++.++...++...+...+.. .+ .+....+++.++|.|..+..+-
T Consensus 168 ~l~~~~~~~~l~~~~~~~~~~-~~---~~~~~~l~~~~~g~~r~~~~~l 212 (327)
T 1iqp_A 168 PLRDEDIAKRLRYIAENEGLE-LT---EEGLQAILYIAEGDMRRAINIL 212 (327)
T ss_dssp CCCHHHHHHHHHHHHHTTTCE-EC---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCC-CC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 788999999888776443221 12 2556778889999998655443
No 174
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=90.43 E-value=0.091 Score=41.67 Aligned_cols=16 Identities=44% Similarity=0.520 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
.|+||||||+++++..
T Consensus 47 ~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 47 PGVGKTHLAVATLKAI 62 (180)
T ss_dssp SSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5999999999999943
No 175
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=90.38 E-value=0.23 Score=40.46 Aligned_cols=30 Identities=30% Similarity=0.154 Sum_probs=20.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFED 34 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~ 34 (348)
||+||||+|..+.. .....= .++.++....
T Consensus 10 GGvGKTT~a~~LA~--~la~~g-~VlliD~D~q 39 (209)
T 3cwq_A 10 GGVGKTTTAVHLSA--YLALQG-ETLLIDGDPN 39 (209)
T ss_dssp TTSSHHHHHHHHHH--HHHTTS-CEEEEEECTT
T ss_pred CCCcHHHHHHHHHH--HHHhcC-CEEEEECCCC
Confidence 89999999999988 443332 4556655443
No 176
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.03 E-value=0.11 Score=40.66 Aligned_cols=15 Identities=27% Similarity=0.102 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|+||||+|+.+..
T Consensus 9 ~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 9 PDCCFKSTVAAKLSK 23 (173)
T ss_dssp SSSSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 177
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=90.00 E-value=0.12 Score=40.36 Aligned_cols=13 Identities=54% Similarity=0.856 Sum_probs=12.1
Q ss_pred CCCCcHHHHHHHH
Q 043181 1 MGGVGKTTLAQLL 13 (348)
Q Consensus 1 mgGiGKTtLa~~v 13 (348)
+.|+||||+|+.+
T Consensus 9 ~~GsGKsT~a~~L 21 (179)
T 3lw7_A 9 MPGSGKSEFAKLL 21 (179)
T ss_dssp CTTSCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 5799999999999
No 178
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=90.00 E-value=0.23 Score=44.43 Aligned_cols=75 Identities=17% Similarity=0.101 Sum_probs=47.5
Q ss_pred hhhccccee------eCCccccCCCCccEEecCCCCCcc-Cchhhh--ccCCCCEeeccCCC-------ccchhHHHh--
Q 043181 264 SLKLQCFRY------ELPSEIGDLKILRYLNFSDAQVET-SPESVC--KLHNLETLKLQNCN-------RLQKLFADI-- 325 (348)
Q Consensus 264 ~~~~~~l~~------~~p~~~~~l~~L~~l~l~~~~~~~-lp~~~~--~l~~L~~L~l~~c~-------~l~~lp~~i-- 325 (348)
+++++.|.+ .++. + .+++|+.|++..+.+.. ....++ .+++|+.|+|..+. .+..+-+.+
T Consensus 171 ~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp CTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 456666666 2333 3 37889999998887652 223343 78999999985321 133333322
Q ss_pred cccccCcEeeccCCC
Q 043181 326 GNLNNLHHLDNFVTF 340 (348)
Q Consensus 326 ~~l~~L~~L~l~~~~ 340 (348)
+.+++|++|++++|.
T Consensus 249 ~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAE 263 (362)
T ss_dssp TTCTTCCEEEEESCT
T ss_pred CCCCCcCEEeCCCCC
Confidence 357899999998873
No 179
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.81 E-value=0.37 Score=38.93 Aligned_cols=42 Identities=21% Similarity=0.137 Sum_probs=26.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTML 45 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il 45 (348)
-|+||||.++.+++ ..+..-..+++..........+..++++
T Consensus 9 DGsGKsTq~~~L~~--~L~~~g~~v~~treP~~t~~~~~ir~~l 50 (197)
T 3hjn_A 9 DGSGKSTQIQLLAQ--YLEKRGKKVILKREPGGTETGEKIRKIL 50 (197)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTCCEEEEESSCSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH--HHHHCCCcEEEEECCCCCcHHHHHHHHh
Confidence 39999999999999 5544433445555444444555555554
No 180
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=89.66 E-value=0.21 Score=41.30 Aligned_cols=16 Identities=31% Similarity=0.260 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
||+||||+|..+....
T Consensus 15 gGvGKTt~a~~la~~l 30 (228)
T 2r8r_A 15 PGVGKTYAMLQAAHAQ 30 (228)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 8999999999988843
No 181
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=89.65 E-value=0.27 Score=39.61 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=19.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+......++ ..++.++..
T Consensus 11 gG~GKTt~a~~la~~la~~g--~~vlliD~D 39 (206)
T 4dzz_A 11 GGSGKTTAVINIATALSRSG--YNIAVVDTD 39 (206)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCccHHHHHHHHHHHHHHCC--CeEEEEECC
Confidence 89999999999988433222 235555554
No 182
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=89.61 E-value=0.35 Score=42.30 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=32.7
Q ss_pred CCCcHHHHHHHHhcchhhhc---CCC--eeEEEEcCCCCCHHHHHHHHHHhcccc
Q 043181 2 GGVGKTTLAQLLCNNVKVKN---RFH--LETWVYLFEDFDVFRITKTMLQSISTE 51 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~---~F~--~~~wv~~~~~~~~~~l~~~il~~l~~~ 51 (348)
.|+|||++|++|.+...... ..+ ..+.++-....+...+...|++++.+.
T Consensus 54 PGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~ 108 (318)
T 3te6_A 54 DDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKE 108 (318)
T ss_dssp CSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCC
Confidence 69999999999999432211 111 244555556567888899999988654
No 183
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.52 E-value=0.13 Score=41.63 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 33 ~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 33 YMGAGKTTLGKAFAR 47 (199)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999987
No 184
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=89.46 E-value=0.13 Score=40.67 Aligned_cols=15 Identities=40% Similarity=0.601 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+||||+|+++++.
T Consensus 52 ~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 52 PGVGKTAIVEGLAQR 66 (195)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999983
No 185
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.37 E-value=0.13 Score=40.83 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|+||||+|+.+..
T Consensus 13 ~~GsGKst~a~~La~ 27 (185)
T 3trf_A 13 LMGAGKTSVGSQLAK 27 (185)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 186
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.25 E-value=0.14 Score=40.35 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 10 ~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 10 CPGSGKSTWAREFIA 24 (181)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999987
No 187
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=88.98 E-value=0.17 Score=40.41 Aligned_cols=15 Identities=47% Similarity=0.678 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+++.+..
T Consensus 17 ~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 17 HPGSGKSTIAEALAN 31 (191)
T ss_dssp CTTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHh
Confidence 479999999999988
No 188
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=88.75 E-value=0.16 Score=40.51 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|+||||+|+.+.+
T Consensus 9 ~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 9 IPGVGKSTVLAKVKE 23 (194)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999988
No 189
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=88.54 E-value=0.16 Score=40.33 Aligned_cols=15 Identities=47% Similarity=0.612 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|+||||+|+.+.+
T Consensus 11 ~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 11 VPGVGSTTSSQLAMD 25 (192)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999988
No 190
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=88.38 E-value=0.17 Score=38.62 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||++|+++++.
T Consensus 33 ~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 33 PGTGRMTGARYLHQF 47 (145)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHh
Confidence 599999999999984
No 191
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.28 E-value=0.89 Score=39.96 Aligned_cols=42 Identities=10% Similarity=0.025 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHH
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASE 110 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~ 110 (348)
+++.++....+...+..... ..+ .+....+++.++|.|-.+.
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~-~i~---~~~l~~l~~~~~G~~r~~~ 232 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENV-KCD---DGVLERILDISAGDLRRGI 232 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHTSSCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHH
Confidence 77788887777776533221 112 2456778888888876543
No 192
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=88.26 E-value=0.25 Score=37.93 Aligned_cols=30 Identities=17% Similarity=0.140 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFE 33 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 33 (348)
.|.|||||++.+++....++ + ..+++...+
T Consensus 45 ~G~GKTtL~~~i~~~~~~~g-~-~~~~~~~~~ 74 (149)
T 2kjq_A 45 EGAGKSHLLQAWVAQALEAG-K-NAAYIDAAS 74 (149)
T ss_dssp STTTTCHHHHHHHHHHHTTT-C-CEEEEETTT
T ss_pred CCCCHHHHHHHHHHHHHhcC-C-cEEEEcHHH
Confidence 59999999999999433211 1 156666543
No 193
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=88.26 E-value=0.18 Score=39.50 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+++.+..
T Consensus 12 ~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 12 PMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 194
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=88.17 E-value=0.18 Score=40.61 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|+||||+|+.+.+
T Consensus 8 ~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 8 TVGAGKSTISAEISK 22 (205)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHH
Confidence 469999999999988
No 195
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=88.12 E-value=0.18 Score=39.63 Aligned_cols=15 Identities=47% Similarity=0.656 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 12 ~~GsGKsTla~~La~ 26 (175)
T 1via_A 12 FMGSGKSTLARALAK 26 (175)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 196
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.11 E-value=0.18 Score=39.86 Aligned_cols=15 Identities=53% Similarity=0.693 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|.||||+|+.+.+
T Consensus 19 ~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 19 TPGVGKTTLGKELAS 33 (180)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 197
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.03 E-value=0.18 Score=40.18 Aligned_cols=15 Identities=47% Similarity=0.534 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 13 ~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 13 HPATGKTTLSQALAT 27 (193)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 198
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.89 E-value=0.13 Score=40.50 Aligned_cols=15 Identities=40% Similarity=0.534 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+||||+|+++++.
T Consensus 52 ~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 52 PGVGKTAIVEGLAIK 66 (187)
T ss_dssp GGGCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999999983
No 199
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.80 E-value=0.2 Score=42.55 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+..-...++ ..++.|+..
T Consensus 10 GGvGKTT~a~nLA~~la~~G--~~VlliD~D 38 (269)
T 1cp2_A 10 GGIGKSTTTQNLTSGLHAMG--KTIMVVGCD 38 (269)
T ss_dssp TTSSHHHHHHHHHHHHHTTT--CCEEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCC--CcEEEEcCC
Confidence 89999999999988333222 135555543
No 200
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=87.66 E-value=0.22 Score=43.07 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||+||+++++
T Consensus 45 pGtGKT~la~aiA~ 58 (293)
T 3t15_A 45 KGQGKSFQCELVFR 58 (293)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999999
No 201
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=87.64 E-value=0.2 Score=40.49 Aligned_cols=15 Identities=20% Similarity=0.609 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 26 ~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 26 VSGSGKSSVGEAIAE 40 (202)
T ss_dssp STTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 202
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.45 E-value=0.18 Score=46.41 Aligned_cols=21 Identities=38% Similarity=0.330 Sum_probs=16.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFH 24 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~ 24 (348)
+|+||||||+++++ .+...++
T Consensus 139 ~G~GKTtLa~aia~--~l~~~~~ 159 (440)
T 2z4s_A 139 VGLGKTHLLQSIGN--YVVQNEP 159 (440)
T ss_dssp SSSSHHHHHHHHHH--HHHHHCC
T ss_pred CCCCHHHHHHHHHH--HHHHhCC
Confidence 69999999999999 5554443
No 203
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.36 E-value=0.37 Score=40.10 Aligned_cols=34 Identities=32% Similarity=0.130 Sum_probs=21.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDV 37 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 37 (348)
||+||||+|..+......++ ..++-|+.....+.
T Consensus 9 GGvGKTt~a~~LA~~la~~g--~~VlliD~D~~~~l 42 (254)
T 3kjh_A 9 GGVGKTTVAAGLIKIMASDY--DKIYAVDGDPDSCL 42 (254)
T ss_dssp SSHHHHHHHHHHHHHHTTTC--SCEEEEEECTTSCH
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCcCh
Confidence 89999999999988433232 24555555433443
No 204
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.28 E-value=0.55 Score=38.12 Aligned_cols=35 Identities=26% Similarity=0.106 Sum_probs=24.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRIT 41 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~ 41 (348)
+|+||||||.++.. . .+ ..++|++....++..++.
T Consensus 29 ~GsGKTtl~~~l~~--~-~~--~~v~~i~~~~~~~~~~~~ 63 (220)
T 2cvh_A 29 YASGKTTLALQTGL--L-SG--KKVAYVDTEGGFSPERLV 63 (220)
T ss_dssp TTSSHHHHHHHHHH--H-HC--SEEEEEESSCCCCHHHHH
T ss_pred CCCCHHHHHHHHHH--H-cC--CcEEEEECCCCCCHHHHH
Confidence 69999999999987 1 11 357788776655554443
No 205
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=87.25 E-value=0.58 Score=41.03 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=21.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVF 38 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 38 (348)
||+||||+|.++.. .....=..++-|+.....+..
T Consensus 23 GGvGKTTvA~~LA~--~lA~~G~rVLlvD~D~~~~l~ 57 (324)
T 3zq6_A 23 GGVGKTTISAATAL--WMARSGKKTLVISTDPAHSLS 57 (324)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTCCEEEEECCSSCCHH
T ss_pred CCchHHHHHHHHHH--HHHHCCCcEEEEeCCCCcCHH
Confidence 89999999999988 333331235555544333433
No 206
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=87.14 E-value=0.78 Score=40.02 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=30.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSIS 49 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~ 49 (348)
+|+||||||.++..+...++ ..++|++.- ....++...++....
T Consensus 77 pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~~~ 120 (315)
T 3bh0_A 77 PSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTAG 120 (315)
T ss_dssp TTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHHHc
Confidence 69999999999987543333 456676654 456677777766543
No 207
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=87.04 E-value=0.23 Score=41.31 Aligned_cols=29 Identities=17% Similarity=0.079 Sum_probs=19.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCC-CeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRF-HLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~~ 32 (348)
||+||||+|..+.. .....- ..++.|+..
T Consensus 14 GGvGKTt~a~~LA~--~la~~~g~~VlliD~D 43 (245)
T 3ea0_A 14 GGDGGSCIAANFAF--ALSQEPDIHVLAVDIS 43 (245)
T ss_dssp TTSSHHHHHHHHHH--HHTTSTTCCEEEEECC
T ss_pred CCcchHHHHHHHHH--HHHhCcCCCEEEEECC
Confidence 89999999999988 443321 235555553
No 208
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=87.03 E-value=0.23 Score=42.15 Aligned_cols=29 Identities=34% Similarity=0.417 Sum_probs=20.1
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFE 33 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 33 (348)
||+||||+|..+..-.. ++ ..++.|+...
T Consensus 37 GGvGKTT~a~~LA~~la-~g--~~VlliD~D~ 65 (267)
T 3k9g_A 37 GGVGKSTSAIILATLLS-KN--NKVLLIDMDT 65 (267)
T ss_dssp SSSCHHHHHHHHHHHHT-TT--SCEEEEEECT
T ss_pred CCchHHHHHHHHHHHHH-CC--CCEEEEECCC
Confidence 89999999999988433 32 2455565543
No 209
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=87.03 E-value=0.23 Score=40.25 Aligned_cols=15 Identities=40% Similarity=0.512 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|+||||+++.+..
T Consensus 20 ~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 20 PSGVGKGTLIKKVLS 34 (204)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 210
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=87.01 E-value=0.86 Score=37.59 Aligned_cols=39 Identities=15% Similarity=0.087 Sum_probs=25.5
Q ss_pred CCCcHHHHHHHHhcchhhhc----CCCeeEEEEcCCCCCHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKN----RFHLETWVYLFEDFDVFRI 40 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~l 40 (348)
+|.||||||+++........ .-..++|++....++..++
T Consensus 33 ~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~ 75 (243)
T 1n0w_A 33 FRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERL 75 (243)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH
T ss_pred CCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHH
Confidence 69999999999887322211 1246788887665555444
No 211
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=86.96 E-value=0.23 Score=41.80 Aligned_cols=15 Identities=40% Similarity=0.459 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
||+||||++..+...
T Consensus 23 gGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 23 AGSGKTTLTGEFGRY 37 (262)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 899999999999873
No 212
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.91 E-value=0.25 Score=39.85 Aligned_cols=16 Identities=44% Similarity=0.545 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
++|.||||+|+.+...
T Consensus 33 ~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 33 LSGSGKSTLACALNQM 48 (200)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999999983
No 213
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=86.90 E-value=0.19 Score=38.25 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||++|+++++.
T Consensus 36 ~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 36 AGSPFETVARYFHKN 50 (143)
T ss_dssp TTCCHHHHHGGGCCT
T ss_pred CCccHHHHHHHHHHh
Confidence 599999999999983
No 214
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=86.89 E-value=0.23 Score=42.00 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=19.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+..-...++ ..++.|+..
T Consensus 28 GGvGKTT~a~nLA~~la~~G--~~VlliD~D 56 (262)
T 2ph1_A 28 GGVGKSTVTALLAVHYARQG--KKVGILDAD 56 (262)
T ss_dssp SCTTHHHHHHHHHHHHHHTT--CCEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEeCC
Confidence 89999999999988333222 134455543
No 215
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.76 E-value=0.24 Score=39.33 Aligned_cols=16 Identities=44% Similarity=0.590 Sum_probs=14.2
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
+.|.||||+|+.+...
T Consensus 21 ~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 21 LPGSGKTTIATRLADL 36 (186)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4799999999999984
No 216
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.71 E-value=0.24 Score=42.53 Aligned_cols=29 Identities=28% Similarity=0.216 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+..-...++ ..++.|+..
T Consensus 11 GGvGKTT~a~nLA~~La~~G--~rVlliD~D 39 (289)
T 2afh_E 11 GGIGKSTTTQNLVAALAEMG--KKVMIVGCD 39 (289)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred CcCcHHHHHHHHHHHHHHCC--CeEEEEecC
Confidence 89999999999988433222 134555543
No 217
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=86.61 E-value=0.56 Score=41.36 Aligned_cols=32 Identities=25% Similarity=0.155 Sum_probs=21.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDF 35 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~ 35 (348)
||+||||+|.++.. .....=..++.|+.....
T Consensus 25 GGvGKTt~a~~lA~--~la~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 25 GGVGKTTTSCSLAI--QLAKVRRSVLLLSTDPAH 56 (334)
T ss_dssp TTSSHHHHHHHHHH--HHTTSSSCEEEEECCSSC
T ss_pred CCccHHHHHHHHHH--HHHhCCCcEEEEECCCCC
Confidence 89999999999987 333332245566655433
No 218
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=86.60 E-value=0.23 Score=41.80 Aligned_cols=14 Identities=43% Similarity=0.608 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||+|+++++
T Consensus 48 ~GtGKT~la~~la~ 61 (262)
T 2qz4_A 48 PGCGKTLLAKAVAT 61 (262)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 219
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.34 E-value=0.21 Score=42.72 Aligned_cols=14 Identities=43% Similarity=0.608 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||+|+++++
T Consensus 60 ~GtGKT~la~~la~ 73 (285)
T 3h4m_A 60 PGTGKTLLAKAVAT 73 (285)
T ss_dssp SSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 69999999999998
No 220
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.30 E-value=0.26 Score=41.57 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||||+++..
T Consensus 9 ~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 9 PTCSGKTDMAIQIAQ 23 (253)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHh
Confidence 469999999999987
No 221
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=86.29 E-value=0.46 Score=39.26 Aligned_cols=29 Identities=31% Similarity=0.169 Sum_probs=20.1
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+.. .....=..++.++..
T Consensus 12 gGvGKTt~a~~LA~--~la~~g~~VlliD~D 40 (237)
T 1g3q_A 12 GGTGKTTVTANLSV--ALGDRGRKVLAVDGD 40 (237)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CCCCHHHHHHHHHH--HHHhcCCeEEEEeCC
Confidence 89999999999998 443332245566654
No 222
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=86.22 E-value=0.27 Score=41.31 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=19.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+......+++ .++.|+..
T Consensus 12 gGvGKTt~a~~LA~~la~~g~--~VlliD~D 40 (260)
T 3q9l_A 12 GGVGKTTSSAAIATGLAQKGK--KTVVIDFA 40 (260)
T ss_dssp TTSSHHHHHHHHHHHHHHTTC--CEEEEECC
T ss_pred CCCcHHHHHHHHHHHHHhCCC--cEEEEECC
Confidence 899999999999884332221 35555554
No 223
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=86.21 E-value=0.27 Score=38.59 Aligned_cols=15 Identities=27% Similarity=0.547 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 16 ~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 16 VSGSGKSAVASEVAH 30 (175)
T ss_dssp STTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 224
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=86.21 E-value=0.28 Score=38.25 Aligned_cols=15 Identities=47% Similarity=0.485 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 15 ~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 15 FMGSGKSSLAQELGL 29 (168)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 225
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=86.16 E-value=0.3 Score=41.35 Aligned_cols=14 Identities=43% Similarity=0.605 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+++++
T Consensus 53 ~GtGKT~la~~la~ 66 (268)
T 2r62_A 53 PGTGKTLLAKAVAG 66 (268)
T ss_dssp SCSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 69999999999998
No 226
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=86.05 E-value=0.6 Score=40.02 Aligned_cols=30 Identities=27% Similarity=0.237 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFE 33 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 33 (348)
||+||||+|..+..-...++ ..++.|+...
T Consensus 14 GGvGKTT~a~nLA~~La~~G--~~VlliD~D~ 43 (286)
T 2xj4_A 14 GGAGKSTIAVHLVTALLYGG--AKVAVIDLDL 43 (286)
T ss_dssp SCTTHHHHHHHHHHHHHHTT--CCEEEEECCT
T ss_pred CCCCHHHHHHHHHHHHHHCC--CcEEEEECCC
Confidence 89999999999988333222 1345555544
No 227
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.93 E-value=0.29 Score=38.21 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 10 ~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 10 ARGCGMTTVGRELAR 24 (173)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 228
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.89 E-value=0.93 Score=36.03 Aligned_cols=15 Identities=47% Similarity=0.614 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|.||||+|+.+.+.
T Consensus 9 ~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 9 DGSGKSTQIQLLAQY 23 (197)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999999883
No 229
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=85.79 E-value=0.32 Score=38.49 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||++.+..
T Consensus 14 sGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 14 HGVGRRHIKNTLIT 27 (180)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999987
No 230
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=85.78 E-value=0.28 Score=42.27 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=19.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+..-...++ ..++.|+..
T Consensus 46 GGvGKTT~a~nLA~~la~~G--~rVlliD~D 74 (298)
T 2oze_A 46 GGVGKSKLSTMFAYLTDKLN--LKVLMIDKD 74 (298)
T ss_dssp SSSSHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred CCchHHHHHHHHHHHHHhCC--CeEEEEeCC
Confidence 89999999999987333222 134455543
No 231
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=85.76 E-value=0.29 Score=38.71 Aligned_cols=15 Identities=40% Similarity=0.399 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 12 ~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 12 PPGAGKGTQASRLAQ 26 (186)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 232
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=85.76 E-value=0.32 Score=38.74 Aligned_cols=15 Identities=40% Similarity=0.547 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+++.+..
T Consensus 10 ~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 10 PAGVGKSTTCKRLAA 24 (189)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHhc
Confidence 369999999999975
No 233
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=85.74 E-value=0.29 Score=38.89 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 18 ~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 18 TPGTGKTSMAEMIAA 32 (184)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 234
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=85.73 E-value=0.3 Score=37.93 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 8 ~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 8 FMCSGKSTVGSLLSR 22 (168)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999988
No 235
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=85.64 E-value=0.33 Score=39.16 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+++.+..
T Consensus 37 ~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 37 VSGSGKTTIAHGVAD 51 (200)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 236
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.54 E-value=0.3 Score=38.64 Aligned_cols=15 Identities=33% Similarity=0.634 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 10 ~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 10 LPGSGKSTIGRRLAK 24 (184)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 237
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.49 E-value=0.46 Score=41.36 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=19.1
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
.|+|||+||+++++.... ..-..+.++++
T Consensus 161 ~GtGKT~La~aia~~~~~-~~g~~v~~~~~ 189 (308)
T 2qgz_A 161 MGIGKSYLLAAMAHELSE-KKGVSTTLLHF 189 (308)
T ss_dssp TTSSHHHHHHHHHHHHHH-HSCCCEEEEEH
T ss_pred CCCCHHHHHHHHHHHHHH-hcCCcEEEEEH
Confidence 599999999999994321 22223455544
No 238
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=85.47 E-value=0.31 Score=42.62 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=18.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
|||||||.|..+.--....+ ..+.-|+..
T Consensus 57 GGVGKTTtavNLA~aLA~~G--kkVllID~D 85 (314)
T 3fwy_A 57 GGIGKSTTSSNLSAAFSILG--KRVLQIGCD 85 (314)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEEES
T ss_pred CccCHHHHHHHHHHHHHHCC--CeEEEEecC
Confidence 89999999888776322222 235555554
No 239
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.43 E-value=0.29 Score=41.22 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+++++
T Consensus 54 ~GtGKT~la~~la~ 67 (257)
T 1lv7_A 54 PGTGKTLLAKAIAG 67 (257)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 240
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=85.41 E-value=0.63 Score=40.28 Aligned_cols=30 Identities=20% Similarity=0.217 Sum_probs=19.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFE 33 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 33 (348)
||+||||+|..+..-...++. .++.|+...
T Consensus 50 GGvGKTT~a~nLA~~La~~G~--~VlliD~D~ 79 (307)
T 3end_A 50 GGIGKSTTSSNLSAAFSILGK--RVLQIGCDP 79 (307)
T ss_dssp TTSSHHHHHHHHHHHHHHTTC--CEEEEEESS
T ss_pred CCccHHHHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 899999999998883332222 455565543
No 241
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.39 E-value=0.43 Score=41.27 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+||||+|+++++.
T Consensus 76 ~GtGKT~la~~la~~ 90 (309)
T 3syl_A 76 PGTGKTTVALKMAGL 90 (309)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999884
No 242
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=85.26 E-value=0.31 Score=41.22 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|.||||+|+.+..
T Consensus 12 ~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 12 LPGVGKSTFSKNLAK 26 (260)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999988
No 243
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=85.20 E-value=0.48 Score=41.37 Aligned_cols=15 Identities=47% Similarity=0.470 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+||||||+++++.
T Consensus 46 ~GtGKT~la~~i~~~ 60 (324)
T 1l8q_A 46 VGTGKTHLLQAAGNE 60 (324)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 699999999999983
No 244
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=85.14 E-value=0.33 Score=39.29 Aligned_cols=16 Identities=38% Similarity=0.534 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
+.|.||||+|+.+.+.
T Consensus 12 ~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 12 IDGSGKSSQATLLKDW 27 (213)
T ss_dssp CTTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4699999999999883
No 245
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=84.96 E-value=0.24 Score=39.06 Aligned_cols=15 Identities=47% Similarity=0.423 Sum_probs=9.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 13 ~~GsGKST~a~~La~ 27 (183)
T 2vli_A 13 PFGVGKTHTAHTLHE 27 (183)
T ss_dssp CC----CHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 246
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=84.81 E-value=0.35 Score=38.48 Aligned_cols=15 Identities=27% Similarity=0.290 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 11 ~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 11 GPGAGKGTQCARIVE 25 (196)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 247
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.74 E-value=0.28 Score=42.54 Aligned_cols=14 Identities=50% Similarity=0.710 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||||+++++
T Consensus 58 ~GtGKT~la~ala~ 71 (301)
T 3cf0_A 58 PGCGKTLLAKAIAN 71 (301)
T ss_dssp SSSSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 69999999999998
No 248
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=84.65 E-value=1 Score=36.55 Aligned_cols=42 Identities=12% Similarity=0.143 Sum_probs=24.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~ 46 (348)
-|+||||+++.+++ .....++. ++..-.......+.+++++.
T Consensus 11 dGsGKsTq~~~L~~--~L~~~~~v-~~~~eP~~t~~g~~ir~~l~ 52 (205)
T 4hlc_A 11 EGSGKTTVINEVYH--RLVKDYDV-IMTREPGGVPTGEEIRKIVL 52 (205)
T ss_dssp TTSCHHHHHHHHHH--HHTTTSCE-EEEESSTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH--HHHCCCCE-EEeeCCCCChHHHHHHHHHh
Confidence 49999999999998 44444432 23333333344455555543
No 249
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.65 E-value=0.32 Score=42.85 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=26.2
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhH
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLAS 109 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal 109 (348)
+.+.++-.+++.+.+-.... ... .+.+..|++.++|-|-.+
T Consensus 179 ~~~~~~l~~iL~~~~~~~~~-~~~---~~~~~~ia~~~~G~~R~a 219 (334)
T 1in4_A 179 FYTVKELKEIIKRAASLMDV-EIE---DAAAEMIAKRSRGTPRIA 219 (334)
T ss_dssp CCCHHHHHHHHHHHHHHTTC-CBC---HHHHHHHHHTSTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC-CcC---HHHHHHHHHhcCCChHHH
Confidence 67778888888776532211 111 355778888888888544
No 250
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=84.63 E-value=1.2 Score=38.91 Aligned_cols=42 Identities=26% Similarity=0.233 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHhcchhhhcC----CCeeEEEEcCCCCCHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNR----FHLETWVYLFEDFDVFRITKT 43 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~~~~~~~~~l~~~ 43 (348)
+|+||||||.++..+...... =..++|++....++..++.+.
T Consensus 116 ~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~ 161 (324)
T 2z43_A 116 FGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENM 161 (324)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH
T ss_pred CCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH
Confidence 699999999998874222210 135789988877777666543
No 251
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=84.59 E-value=0.33 Score=41.25 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+++++
T Consensus 73 ~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 73 PHSGKTALAAKIAE 86 (272)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 69999999999998
No 252
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=84.48 E-value=0.37 Score=38.45 Aligned_cols=15 Identities=27% Similarity=0.306 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 17 ~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 17 GPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 253
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=84.46 E-value=0.39 Score=38.12 Aligned_cols=16 Identities=44% Similarity=0.677 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
.|+|||||++.+....
T Consensus 9 nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 9 PGVGKTTLVKKIVERL 24 (178)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5999999999999843
No 254
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=84.45 E-value=0.34 Score=40.67 Aligned_cols=14 Identities=50% Similarity=0.710 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||||+++++
T Consensus 58 ~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 58 PGVGKTHLARAVAG 71 (254)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 255
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=84.44 E-value=1.3 Score=36.19 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHhcch
Q 043181 1 MGGVGKTTLAQLLCNNV 17 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (348)
+.|.||||+++.+.+..
T Consensus 14 ~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 14 PEGAGKSTNRDYLAERL 30 (213)
T ss_dssp STTSSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 36999999999999843
No 256
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=84.44 E-value=0.33 Score=41.82 Aligned_cols=15 Identities=33% Similarity=0.492 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|+||||+|+.+..
T Consensus 41 ~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 41 QPGSGKTSLRSAIFE 55 (287)
T ss_dssp CTTSCTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 257
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=84.31 E-value=0.38 Score=38.76 Aligned_cols=15 Identities=40% Similarity=0.368 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 28 ~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 28 PPGAGKGTQAVKLAE 42 (201)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 258
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=84.22 E-value=0.39 Score=39.34 Aligned_cols=15 Identities=33% Similarity=0.291 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
||+||||+|..+..-
T Consensus 11 gGvGKTt~a~nLa~~ 25 (224)
T 1byi_A 11 TEVGKTVASCALLQA 25 (224)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 899999999999883
No 259
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=84.20 E-value=2.4 Score=37.97 Aligned_cols=46 Identities=24% Similarity=0.415 Sum_probs=27.5
Q ss_pred CCCCcHHHHHHHHhcchhhh---cCCC-eeEEEEcCCCCCHHHHHHHHHH
Q 043181 1 MGGVGKTTLAQLLCNNVKVK---NRFH-LETWVYLFEDFDVFRITKTMLQ 46 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~~~~~~~~~~l~~~il~ 46 (348)
++|+||||||+++++..... ..|+ ..+|++.....+...+.+.++.
T Consensus 60 ~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 109 (412)
T 1w5s_A 60 RVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVR 109 (412)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHH
Confidence 47999999999999843221 0122 3567775444445455444443
No 260
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=84.19 E-value=0.74 Score=40.81 Aligned_cols=15 Identities=47% Similarity=0.601 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
||+||||+|.++...
T Consensus 35 GGvGKTTvA~~LA~~ 49 (349)
T 3ug7_A 35 GGVGKTTMSAATGVY 49 (349)
T ss_dssp SSTTHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH
Confidence 899999999999883
No 261
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=84.18 E-value=0.38 Score=38.44 Aligned_cols=15 Identities=33% Similarity=0.337 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 20 ~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 20 GPGSGKGTQCEKLVE 34 (199)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999988
No 262
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=84.13 E-value=0.79 Score=41.02 Aligned_cols=29 Identities=24% Similarity=0.212 Sum_probs=20.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+... ....=..++.++..
T Consensus 153 GGvGKTT~a~nLA~~--La~~g~rVlliD~D 181 (373)
T 3fkq_A 153 GGVGTSTVAAACAIA--HANMGKKVFYLNIE 181 (373)
T ss_dssp TTSSHHHHHHHHHHH--HHHHTCCEEEEECC
T ss_pred CCChHHHHHHHHHHH--HHhCCCCEEEEECC
Confidence 899999999999883 33221245666655
No 263
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=84.10 E-value=0.86 Score=40.38 Aligned_cols=30 Identities=23% Similarity=0.189 Sum_probs=19.9
Q ss_pred CCCcHHHHHHHHhcchhhh--cCCCeeEEEEcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVK--NRFHLETWVYLFE 33 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~ 33 (348)
||+||||+|.++.. ... ..=..++.|+...
T Consensus 27 GGvGKTt~a~~lA~--~la~~~~g~~vllid~D~ 58 (348)
T 3io3_A 27 GGVGKTTTSSSVAV--QLALAQPNEQFLLISTDP 58 (348)
T ss_dssp TTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCS
T ss_pred CCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCC
Confidence 89999999999987 333 2212355555543
No 264
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=84.07 E-value=1.1 Score=36.08 Aligned_cols=16 Identities=25% Similarity=0.378 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
+.|.||||+|+.+.+.
T Consensus 17 ~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 17 VDRAGKSTQSRKLVEA 32 (215)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3699999999999983
No 265
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=83.99 E-value=0.67 Score=39.00 Aligned_cols=29 Identities=34% Similarity=0.209 Sum_probs=19.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+.. .....=..++.|+..
T Consensus 12 gGvGKTt~a~~LA~--~la~~g~~VlliD~D 40 (263)
T 1hyq_A 12 GGTGKTTITANLGV--ALAQLGHDVTIVDAD 40 (263)
T ss_dssp SCSCHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CCCCHHHHHHHHHH--HHHhCCCcEEEEECC
Confidence 89999999999988 333321245556554
No 266
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=83.94 E-value=0.32 Score=41.90 Aligned_cols=14 Identities=43% Similarity=0.555 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+++++
T Consensus 63 ~GtGKT~la~~la~ 76 (297)
T 3b9p_A 63 PGNGKTLLARAVAT 76 (297)
T ss_dssp SSSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 267
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=83.82 E-value=0.3 Score=41.21 Aligned_cols=29 Identities=38% Similarity=0.224 Sum_probs=19.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+..- ....=..++.|+..
T Consensus 16 GGvGKTt~a~~LA~~--la~~g~~VlliD~D 44 (257)
T 1wcv_1 16 GGVGKTTTAINLAAY--LARLGKRVLLVDLD 44 (257)
T ss_dssp CCHHHHHHHHHHHHH--HHHTTCCEEEEECC
T ss_pred CCchHHHHHHHHHHH--HHHCCCCEEEEECC
Confidence 899999999999983 33221234555543
No 268
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=83.79 E-value=0.41 Score=38.59 Aligned_cols=15 Identities=40% Similarity=0.536 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 9 ~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 9 NIGCGKSTVAQMFRE 23 (204)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHH
Confidence 369999999999976
No 269
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=83.77 E-value=0.41 Score=37.53 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||++.++.
T Consensus 18 nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 18 SGSGKSTFAKKHFK 31 (171)
T ss_dssp TTSCHHHHHHHHSC
T ss_pred CCCCHHHHHHHHcc
Confidence 69999999999765
No 270
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=83.74 E-value=0.33 Score=42.54 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+|||+||+++++
T Consensus 60 pGtGKT~la~aia~ 73 (322)
T 3eie_A 60 PGTGKSYLAKAVAT 73 (322)
T ss_dssp SSSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 69999999999998
No 271
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=83.72 E-value=0.38 Score=41.11 Aligned_cols=14 Identities=50% Similarity=0.686 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.||||||++++.
T Consensus 53 ~GtGKTtLakala~ 66 (274)
T 2x8a_A 53 PGCGKTLLAKAVAN 66 (274)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 69999999999998
No 272
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=83.65 E-value=0.41 Score=38.06 Aligned_cols=15 Identities=47% Similarity=0.614 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 8 ~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 8 IDGSGKTTQAKKLYE 22 (195)
T ss_dssp STTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999988
No 273
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=83.62 E-value=0.41 Score=39.41 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|+||||+|+.+.+
T Consensus 15 ~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 15 APGSGKGTVSSRITT 29 (227)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 274
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.60 E-value=0.42 Score=39.15 Aligned_cols=15 Identities=40% Similarity=0.313 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 12 ~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 12 PPGAGKGTQAPNLQE 26 (220)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 275
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=83.50 E-value=0.41 Score=39.23 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 13 ~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 13 APASGKGTQCELIKT 27 (222)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999988
No 276
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=83.43 E-value=0.96 Score=40.93 Aligned_cols=61 Identities=13% Similarity=0.097 Sum_probs=43.7
Q ss_pred ccccCCCCccEEecCCCCCccCchhhhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccC
Q 043181 276 SEIGDLKILRYLNFSDAQVETSPESVCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFV 338 (348)
Q Consensus 276 ~~~~~l~~L~~l~l~~~~~~~lp~~~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~ 338 (348)
..+..+.+|+.++++.|.++.+|...-...+|+.+.+.. .+..++. .+.++++|+.+.+..
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT
T ss_pred HHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC
Confidence 456778889999999888888877665567888887764 3666654 355666777777654
No 277
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=83.36 E-value=1.2 Score=39.60 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=25.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVF 38 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 38 (348)
+|+||||||.++.......+ ..++|++....++..
T Consensus 72 pGsGKTtLal~la~~~~~~g--~~vlyid~E~s~~~~ 106 (356)
T 1u94_A 72 ESSGKTTLTLQVIAAAQREG--KTCAFIDAEHALDPI 106 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEeCCCCccHH
Confidence 69999999999987433222 368899887766643
No 278
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=83.09 E-value=0.43 Score=38.75 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|.|||||++.+..-
T Consensus 31 sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 31 PGSGKSTLSNPLAAA 45 (208)
T ss_dssp TTSCTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999883
No 279
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=82.96 E-value=1.3 Score=38.55 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=28.8
Q ss_pred CCCcHHHHHHHHhcchhhhc---------CC-----CeeEEEEcCCCCCHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKN---------RF-----HLETWVYLFEDFDVFRITKT 43 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~~~~~~~~~l~~~ 43 (348)
+|+||||||.++..+..... .. ..++|++.-..++..++.+.
T Consensus 107 ~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~ 162 (322)
T 2i1q_A 107 FGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM 162 (322)
T ss_dssp TTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence 69999999999886422211 11 35788988887777766644
No 280
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=82.93 E-value=0.44 Score=38.12 Aligned_cols=15 Identities=40% Similarity=0.523 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
.+|+|||||++++..
T Consensus 9 PSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 9 PSGTGKSTLLKKLFA 23 (186)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999876
No 281
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.91 E-value=0.45 Score=38.48 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
+.|.||||+|+.+.+.
T Consensus 18 ~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 18 LDRSGKSTQSKLLVEY 33 (212)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3699999999999883
No 282
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=82.81 E-value=1.3 Score=39.25 Aligned_cols=36 Identities=19% Similarity=0.135 Sum_probs=22.4
Q ss_pred CCCcHHHHHHHHhcchhhh--cCCCeeEEEEcCCCCCHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVK--NRFHLETWVYLFEDFDVFR 39 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~--~~F~~~~wv~~~~~~~~~~ 39 (348)
||+||||+|..+.- ... ..=..++-|+.....++..
T Consensus 27 GGvGKTTvaanLA~--~lA~~~~G~rVLLvD~D~~~~l~~ 64 (354)
T 2woj_A 27 GGVGKTTSSCSIAI--QMALSQPNKQFLLISTDPAHNLSD 64 (354)
T ss_dssp TTSSHHHHHHHHHH--HHHHHCTTSCEEEEECCSSCCHHH
T ss_pred CCCcHHHHHHHHHH--HHHHhcCCCeEEEEECCCCCCHHH
Confidence 89999999999887 443 2212355565544344433
No 283
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=82.76 E-value=0.46 Score=38.22 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
..|.||||+++.+..
T Consensus 14 ~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 14 PSGVGKGTVRKRIFE 28 (207)
T ss_dssp STTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 284
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=82.68 E-value=0.47 Score=37.60 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 14 ~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 14 GPGSGKGTQCANIVR 28 (194)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 285
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=82.67 E-value=0.49 Score=37.26 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+++.+..
T Consensus 13 ~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 13 LSGAGKTTVSMALEE 27 (179)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999988
No 286
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=82.52 E-value=0.48 Score=38.11 Aligned_cols=15 Identities=33% Similarity=0.359 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 23 ~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 23 GPGAGKGTQCEKLVK 37 (203)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 287
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=82.44 E-value=1.9 Score=38.03 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=28.7
Q ss_pred CCCcHHHHHHHHhcchhhhc----CCCeeEEEEcCCCCCHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKN----RFHLETWVYLFEDFDVFRITKT 43 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~l~~~ 43 (348)
+|+||||||.++..+..... .=..++|++....++..++.+.
T Consensus 131 ~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~ 176 (343)
T 1v5w_A 131 FRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDI 176 (343)
T ss_dssp TTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHH
Confidence 59999999999887432211 1236789988877777665543
No 288
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=82.40 E-value=1.1 Score=39.37 Aligned_cols=29 Identities=28% Similarity=0.190 Sum_probs=18.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+.. .....=..++.++..
T Consensus 28 GGvGKTTva~~LA~--~lA~~G~rVllvD~D 56 (329)
T 2woo_A 28 GGVGKTTTSCSLAI--QMSKVRSSVLLISTD 56 (329)
T ss_dssp SSSSHHHHHHHHHH--HHHTSSSCEEEEECC
T ss_pred CCCcHHHHHHHHHH--HHHHCCCeEEEEECC
Confidence 89999999999887 333321134455544
No 289
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=82.39 E-value=0.48 Score=42.86 Aligned_cols=14 Identities=43% Similarity=0.555 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
||+||||+|..+..
T Consensus 118 GGvGKTT~a~nLA~ 131 (398)
T 3ez2_A 118 GGVSKTVSTVSLAH 131 (398)
T ss_dssp SSSSHHHHHHHHHH
T ss_pred CCccHHHHHHHHHH
Confidence 89999999999987
No 290
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=82.37 E-value=0.49 Score=38.47 Aligned_cols=16 Identities=38% Similarity=0.449 Sum_probs=14.0
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
+.|.||||+|+.+...
T Consensus 33 ~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 33 LSASGKSTLAVELEHQ 48 (211)
T ss_dssp STTSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4699999999999883
No 291
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=82.35 E-value=0.54 Score=39.27 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
..|.||||+++.+.+
T Consensus 35 ~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 35 PPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999995
No 292
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=82.21 E-value=0.56 Score=37.69 Aligned_cols=14 Identities=43% Similarity=0.717 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||++.+..
T Consensus 16 ~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 16 SGAGKTSLVRALVK 29 (205)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 59999999999987
No 293
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=82.19 E-value=1.7 Score=35.42 Aligned_cols=33 Identities=27% Similarity=0.267 Sum_probs=20.5
Q ss_pred CCCcHHHHHHHHhcchhh---hc-CCCeeEEEEcCCC
Q 043181 2 GGVGKTTLAQLLCNNVKV---KN-RFHLETWVYLFED 34 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~---~~-~F~~~~wv~~~~~ 34 (348)
.|.|||||++.+...... .. .-...+|+.-...
T Consensus 34 nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~ 70 (231)
T 4a74_A 34 FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 70 (231)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred CCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC
Confidence 699999999999762211 11 1234677765443
No 294
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=82.18 E-value=1.1 Score=36.91 Aligned_cols=16 Identities=31% Similarity=0.395 Sum_probs=14.1
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
+.|.||||+++.+.+.
T Consensus 34 ~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 34 PEGSGKTTVINEVYHR 49 (229)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 3699999999999984
No 295
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=82.09 E-value=0.51 Score=38.41 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 8 ~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 8 LPGAGKGTQAEQIIE 22 (216)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999977
No 296
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=82.08 E-value=0.48 Score=40.41 Aligned_cols=14 Identities=50% Similarity=0.710 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||||+++++
T Consensus 82 ~GtGKTtl~~~i~~ 95 (278)
T 1iy2_A 82 PGVGKTHLARAVAG 95 (278)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CcChHHHHHHHHHH
Confidence 69999999999998
No 297
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=81.92 E-value=0.59 Score=37.72 Aligned_cols=15 Identities=47% Similarity=0.578 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+++.+..
T Consensus 10 ~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 10 GIGSGKTTIANLFTD 24 (206)
T ss_dssp STTSCHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999976
No 298
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=81.91 E-value=1.1 Score=36.94 Aligned_cols=17 Identities=41% Similarity=0.800 Sum_probs=11.5
Q ss_pred CCCCcHHHHHHHHhcch
Q 043181 1 MGGVGKTTLAQLLCNNV 17 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~ 17 (348)
+.|+||||+++.+.+..
T Consensus 33 ~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 33 IDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CC---CHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 36999999999999843
No 299
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=81.91 E-value=0.59 Score=37.78 Aligned_cols=14 Identities=50% Similarity=0.487 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.||||+|+.+..
T Consensus 30 ~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 30 TNSGKTTLAKNLQK 43 (207)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999987
No 300
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=81.87 E-value=0.99 Score=35.41 Aligned_cols=14 Identities=36% Similarity=0.316 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||+..+..
T Consensus 13 sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 13 KHSGKTTLMEKWVA 26 (169)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 301
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=81.85 E-value=0.48 Score=41.52 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+|||+||+++++
T Consensus 54 pGtGKT~la~ala~ 67 (322)
T 1xwi_A 54 PGTGKSYLAKAVAT 67 (322)
T ss_dssp SSSCHHHHHHHHHH
T ss_pred CCccHHHHHHHHHH
Confidence 69999999999998
No 302
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=81.85 E-value=0.54 Score=37.76 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 12 ~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 12 LDKSGKTTQCMNIME 26 (204)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999988
No 303
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=81.84 E-value=0.58 Score=37.96 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+|||||++.+..
T Consensus 17 sGsGKsTl~~~L~~ 30 (208)
T 3tau_A 17 SGVGKGTVREAVFK 30 (208)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999987
No 304
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=81.67 E-value=0.53 Score=39.61 Aligned_cols=15 Identities=40% Similarity=0.698 Sum_probs=13.9
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+++.+..
T Consensus 56 ~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 56 MMGSGKTTVGKIMAR 70 (250)
T ss_dssp STTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 579999999999988
No 305
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=81.57 E-value=0.57 Score=37.22 Aligned_cols=14 Identities=43% Similarity=0.617 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||++.+..
T Consensus 10 sGaGKsTl~~~L~~ 23 (186)
T 3a00_A 10 SGTGKSTLLKKLFA 23 (186)
T ss_dssp SSSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 59999999999987
No 306
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=81.54 E-value=0.55 Score=38.45 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
..|.||||+|+.+..
T Consensus 13 ~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 13 PSGAGKGTLCKAMAE 27 (227)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 307
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=81.53 E-value=0.56 Score=38.34 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 13 ~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 13 APGSGKGTQCEFIKK 27 (217)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 308
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=81.44 E-value=0.58 Score=36.29 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||++.+..
T Consensus 42 nGaGKTTLlr~l~g 55 (158)
T 1htw_A 42 LGAGKTTLTRGMLQ 55 (158)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999988
No 309
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=81.35 E-value=0.56 Score=38.17 Aligned_cols=15 Identities=27% Similarity=0.472 Sum_probs=13.2
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|+||||+|+.+..
T Consensus 8 ~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 8 LPGAGKGTQGERIVE 22 (216)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999976
No 310
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=81.34 E-value=0.56 Score=38.18 Aligned_cols=15 Identities=33% Similarity=0.313 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 8 ~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 8 APVAGKGTQAQFIME 22 (214)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 311
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=81.30 E-value=0.96 Score=40.28 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=21.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFD 36 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 36 (348)
||+||||+|..+..- ....=..++.|+.....+
T Consensus 11 GGvGKTT~a~nLA~~--LA~~G~rVLlID~D~q~~ 43 (361)
T 3pg5_A 11 GGVGKTTLSTNVAHY--FALQGKRVLYVDCDPQCN 43 (361)
T ss_dssp CCHHHHHHHHHHHHH--HHHTTCCEEEEECCTTCT
T ss_pred CCCcHHHHHHHHHHH--HHhCCCcEEEEEcCCCCC
Confidence 899999999999873 332212456666544333
No 312
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=81.15 E-value=1.9 Score=35.13 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=26.1
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~ 46 (348)
.|.||||+++.+.+...-. .+..+.+..-.....+.+.+++++.
T Consensus 12 ~gsGKsT~~~~l~~~l~~~-~~~~v~~~rep~~t~~g~~ir~~l~ 55 (213)
T 4tmk_A 12 EGAGKTTARNVVVETLEQL-GIRDMVFTREPGGTQLAEKLRSLLL 55 (213)
T ss_dssp TTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHc-CCCcceeeeCCCCCHHHHHHHHHHh
Confidence 6999999999999844333 2323343333333345555666554
No 313
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=81.11 E-value=0.54 Score=39.66 Aligned_cols=15 Identities=33% Similarity=0.346 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||++|+++++.
T Consensus 38 ~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 38 RGTGKELIASRLHYL 52 (265)
T ss_dssp TTSCHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHh
Confidence 599999999999983
No 314
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=81.05 E-value=1.3 Score=36.39 Aligned_cols=46 Identities=17% Similarity=0.091 Sum_probs=26.2
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHH
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQ 46 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~ 46 (348)
+.|.||||+++.+.+.......++..............+.+++++.
T Consensus 29 ~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~ 74 (223)
T 3ld9_A 29 IDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLF 74 (223)
T ss_dssp STTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHh
Confidence 3699999999999984333122333332333333344555666655
No 315
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=80.99 E-value=0.48 Score=42.12 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+|||+||+++++
T Consensus 93 pGtGKT~la~ala~ 106 (355)
T 2qp9_X 93 PGTGKSYLAKAVAT 106 (355)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 69999999999999
No 316
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=80.90 E-value=0.6 Score=38.62 Aligned_cols=15 Identities=40% Similarity=0.395 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 24 ~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 24 PPGAGKGTQAPKLAK 38 (233)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999988
No 317
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.82 E-value=0.56 Score=40.40 Aligned_cols=14 Identities=50% Similarity=0.736 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+++.+
T Consensus 59 ~GtGKT~la~~la~ 72 (310)
T 1ofh_A 59 TGVGKTEIARRLAK 72 (310)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 318
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=80.81 E-value=9.4 Score=33.26 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=25.2
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHH
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEIL 112 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~i 112 (348)
+++.++..+.+.... . .. .+....+++.++|.|..+..+
T Consensus 166 ~~~~~~~~~~L~~~~----~--~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 166 PPPEQYAVTWLSREV----T--MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp CCCHHHHHHHHHHHC----C--CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred CCCHHHHHHHHHHhc----C--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 677787777777664 1 11 234567888888888655443
No 319
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=80.77 E-value=0.61 Score=38.32 Aligned_cols=15 Identities=33% Similarity=0.437 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 8 ~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 8 PNGSGKGTQGNLVKD 22 (223)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 320
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=80.56 E-value=2 Score=37.44 Aligned_cols=37 Identities=3% Similarity=-0.211 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVF 38 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 38 (348)
.|+||||||.++......++.=..++|++.-..++..
T Consensus 37 pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ 73 (333)
T 3io5_A 37 SKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA 73 (333)
T ss_dssp SSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH
Confidence 6999999999988743322101357899887777653
No 321
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=80.53 E-value=0.57 Score=41.60 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+++.+
T Consensus 79 pGtGKT~la~~la~ 92 (368)
T 3uk6_A 79 PGTGKTAIAMGMAQ 92 (368)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 322
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=80.32 E-value=1.8 Score=38.32 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=24.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDV 37 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~ 37 (348)
+|+||||||.++.......+ ..++|++....++.
T Consensus 70 pGsGKTtLal~la~~~~~~g--~~vlyi~~E~~~~~ 103 (349)
T 2zr9_A 70 ESSGKTTVALHAVANAQAAG--GIAAFIDAEHALDP 103 (349)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCH
T ss_pred CCCCHHHHHHHHHHHHHhCC--CeEEEEECCCCcCH
Confidence 69999999999987433222 35788888766664
No 323
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=80.18 E-value=0.66 Score=37.13 Aligned_cols=15 Identities=47% Similarity=0.521 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 16 ~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 16 NIGSGKSTVAALLRS 30 (203)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 324
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=80.09 E-value=0.69 Score=37.42 Aligned_cols=14 Identities=57% Similarity=0.617 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||++.+..
T Consensus 15 ~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 15 TASGKTTLAQALAR 28 (211)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999988
No 325
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=79.89 E-value=0.71 Score=37.14 Aligned_cols=14 Identities=43% Similarity=0.643 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||++.+..
T Consensus 13 sGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 13 SGAGKSTLLKKLFQ 26 (198)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999987
No 326
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=79.86 E-value=0.56 Score=41.74 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+++++
T Consensus 126 pGtGKT~la~aia~ 139 (357)
T 3d8b_A 126 PGTGKTLIGKCIAS 139 (357)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 327
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=79.84 E-value=0.71 Score=37.36 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||++.+..
T Consensus 29 nGsGKSTLl~~l~g 42 (207)
T 1znw_A 29 SAVGKSTVVRCLRE 42 (207)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 59999999999987
No 328
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=79.74 E-value=0.56 Score=43.19 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=26.6
Q ss_pred CCChHHHHHHHHHhhcCC------CCCCcChhHHHHHHHHHHHcCCCchhH
Q 043181 65 KWSDDDCLCVFTQRSSRR------TDFNMHMHLKEIGEKIVKKCNGLPLAS 109 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~------~~~~~~~~~~~~~~~i~~~c~GlPLal 109 (348)
+++.++...++.+..... ...... .+....+++.++|-+-.+
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i~---~~al~~L~~~~~Gd~R~l 211 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLP---DETRRAIAELVNGDARRA 211 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEECC---HHHHHHHHHHHCSCHHHH
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcCC---HHHHHHHHHHCCCCHHHH
Confidence 788899888888876431 111111 355677777888877544
No 329
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=79.64 E-value=2 Score=38.16 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=24.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVF 38 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 38 (348)
.|+||||||.++.......+ ..++|++....++..
T Consensus 70 pGsGKSTLal~la~~~~~~g--g~VlyId~E~s~~~~ 104 (356)
T 3hr8_A 70 ESSGKTTLALHAIAEAQKMG--GVAAFIDAEHALDPV 104 (356)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH
T ss_pred CCCCHHHHHHHHHHHHHhcC--CeEEEEecccccchH
Confidence 69999999999998433222 246788876666644
No 330
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=79.60 E-value=2.2 Score=35.38 Aligned_cols=44 Identities=14% Similarity=0.128 Sum_probs=24.7
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHH
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTML 45 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il 45 (348)
..|.||||+++.+.+..... .+.......-.......+.+++++
T Consensus 35 ~~GsGKsT~~~~l~~~l~~~-~~~~~~~~rep~~t~~g~~ir~~l 78 (236)
T 3lv8_A 35 LEGAGKSTAIQVVVETLQQN-GIDHITRTREPGGTLLAEKLRALV 78 (236)
T ss_dssp STTSCHHHHHHHHHHHHHHT-TCCCEEEEESSCSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhc-CCCeeeeecCCCCCHHHHHHHHHH
Confidence 36999999999999844332 344344443333323334444444
No 331
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.56 E-value=0.6 Score=42.62 Aligned_cols=14 Identities=43% Similarity=0.648 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.|||+||+++++
T Consensus 215 PGtGKT~lakAiA~ 228 (428)
T 4b4t_K 215 PGTGKTMLVKAVAN 228 (428)
T ss_dssp TTTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999999
No 332
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=79.52 E-value=0.69 Score=39.82 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|.||||+|+.+.+
T Consensus 10 ~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 10 CPGSGKSTWAREFIA 24 (301)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 333
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.49 E-value=0.6 Score=42.14 Aligned_cols=14 Identities=43% Similarity=0.624 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.|||+||+++++
T Consensus 191 PGTGKTllAkAiA~ 204 (405)
T 4b4t_J 191 PGTGKTLLARAVAH 204 (405)
T ss_dssp SSSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 334
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=79.48 E-value=0.78 Score=36.13 Aligned_cols=15 Identities=53% Similarity=0.614 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||.+.+.+.
T Consensus 11 ~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 11 TGSGKTTLLQQLMKT 25 (184)
T ss_dssp TTSSHHHHHHHHTCC
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999873
No 335
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=79.26 E-value=0.81 Score=36.85 Aligned_cols=14 Identities=50% Similarity=0.560 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||+++.+..
T Consensus 31 ~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 31 SRSGKTTLANQLSQ 44 (201)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999987
No 336
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=79.23 E-value=2 Score=37.84 Aligned_cols=45 Identities=13% Similarity=0.155 Sum_probs=30.4
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhccc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSIST 50 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~~ 50 (348)
+|+||||||..+..+....+ ..++|++. .....++...++.....
T Consensus 55 pG~GKTt~al~ia~~~a~~g--~~Vl~fSl--Ems~~ql~~Rlls~~~~ 99 (338)
T 4a1f_A 55 PSMGKTSLMMNMVLSALNDD--RGVAVFSL--EMSAEQLALRALSDLTS 99 (338)
T ss_dssp TTSCHHHHHHHHHHHHHHTT--CEEEEEES--SSCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHcC--CeEEEEeC--CCCHHHHHHHHHHHhhC
Confidence 69999999999988544322 24555544 45677777777766543
No 337
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=79.09 E-value=0.5 Score=39.73 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|.||||+|+.+..
T Consensus 40 ~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 40 QSGAGKTTIHRIKQK 54 (253)
T ss_dssp CGGGTTHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 338
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=78.99 E-value=2.5 Score=38.18 Aligned_cols=58 Identities=7% Similarity=0.074 Sum_probs=30.3
Q ss_pred ccCCCCccEEecCCCCCccCc-hhhhccCCCCEeeccCCCccchhHH-HhcccccCcEeeccCC
Q 043181 278 IGDLKILRYLNFSDAQVETSP-ESVCKLHNLETLKLQNCNRLQKLFA-DIGNLNNLHHLDNFVT 339 (348)
Q Consensus 278 ~~~l~~L~~l~l~~~~~~~lp-~~~~~l~~L~~L~l~~c~~l~~lp~-~i~~l~~L~~L~l~~~ 339 (348)
+..+.+|+.+.+.+ .++.++ ..+..+++|+.+.+.. .+..++. .+.++ +|+.+.+.++
T Consensus 296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 34445555555542 244443 2344556666666643 3455543 35556 7777777666
No 339
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=78.98 E-value=1.4 Score=36.39 Aligned_cols=30 Identities=30% Similarity=0.215 Sum_probs=19.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFE 33 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 33 (348)
+|+||||||.++.......+ ..++|++...
T Consensus 32 ~GsGKTtl~~~~~~~~~~~~--~~v~~~~~e~ 61 (247)
T 2dr3_A 32 PGTGKTIFSQQFLWNGLKMG--EPGIYVALEE 61 (247)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEESSS
T ss_pred CCCCHHHHHHHHHHHHHhcC--CeEEEEEccC
Confidence 69999999998876332221 3567776544
No 340
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=78.96 E-value=0.77 Score=38.08 Aligned_cols=14 Identities=43% Similarity=0.534 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||++.+..
T Consensus 39 nGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 39 TGTGKTTFAAQFIY 52 (251)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999884
No 341
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=78.91 E-value=0.72 Score=37.67 Aligned_cols=15 Identities=47% Similarity=0.530 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+.++...
T Consensus 47 ~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 47 IGSGKTLLIEKLIDN 61 (226)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999999874
No 342
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=78.85 E-value=0.69 Score=41.16 Aligned_cols=14 Identities=50% Similarity=0.646 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||++|+++++
T Consensus 60 pGtGKT~la~~ia~ 73 (363)
T 3hws_A 60 TGSGKTLLAETLAR 73 (363)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 343
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=78.80 E-value=0.7 Score=39.90 Aligned_cols=14 Identities=57% Similarity=0.760 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+.+++
T Consensus 56 ~GtGKt~la~~la~ 69 (311)
T 4fcw_A 56 TGVGKTELAKTLAA 69 (311)
T ss_dssp SSSSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHH
Confidence 69999999999998
No 344
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=78.74 E-value=0.8 Score=37.44 Aligned_cols=29 Identities=17% Similarity=0.072 Sum_probs=18.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
.|.|||||++.+.......+ ..++|+...
T Consensus 32 ~GsGKTtl~~~l~~~~~~~~--~~v~~~~~~ 60 (235)
T 2w0m_A 32 PGTGKTIFSLHFIAKGLRDG--DPCIYVTTE 60 (235)
T ss_dssp TTSSHHHHHHHHHHHHHHHT--CCEEEEESS
T ss_pred CCCCHHHHHHHHHHHHHHCC--CeEEEEEcc
Confidence 59999999999986332222 235565543
No 345
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=78.67 E-value=2.7 Score=37.94 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=27.3
Q ss_pred CCCcHHHHHHHHhcchhhhc----CCCeeEEEEcCCCCCHHHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNNVKVKN----RFHLETWVYLFEDFDVFRITKTMLQSIS 49 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~~~~~~~~~l~~~il~~l~ 49 (348)
+|+|||||+.+++-...... .-..++|++....++..++. .+.+.++
T Consensus 187 sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 187 FRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 69999999997653211111 22357888876655554433 2444443
No 346
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=78.66 E-value=0.81 Score=37.46 Aligned_cols=14 Identities=57% Similarity=0.726 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||++.+..
T Consensus 32 sGsGKSTLl~~L~g 45 (218)
T 1z6g_A 32 SGVGKGTLIKKLLN 45 (218)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 59999999999987
No 347
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=78.65 E-value=0.7 Score=41.31 Aligned_cols=14 Identities=50% Similarity=0.653 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+++++
T Consensus 81 ~GtGKT~la~~la~ 94 (376)
T 1um8_A 81 TGSGKTLMAQTLAK 94 (376)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 348
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.55 E-value=0.68 Score=42.32 Aligned_cols=15 Identities=40% Similarity=0.423 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
.+|.|||+||+++++
T Consensus 223 PPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 223 PPGTGKTLLARACAA 237 (434)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHH
Confidence 369999999999999
No 349
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=78.49 E-value=0.82 Score=36.89 Aligned_cols=14 Identities=29% Similarity=0.624 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||++.+..
T Consensus 28 SGaGKsTL~~~L~~ 41 (197)
T 3ney_A 28 SGVGRSHIKNALLS 41 (197)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999987
No 350
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=78.43 E-value=0.87 Score=38.23 Aligned_cols=15 Identities=40% Similarity=0.581 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+++.+..
T Consensus 35 ~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 35 PSGAGKGTLCKALAE 49 (252)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999996
No 351
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=78.25 E-value=2.2 Score=39.35 Aligned_cols=45 Identities=31% Similarity=0.291 Sum_probs=32.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCC-CHHHHHHHHHHh
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDF-DVFRITKTMLQS 47 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~l~~~il~~ 47 (348)
+|+|||||+..+.++. .+.+-+.++++-+++.. ++.++.+++...
T Consensus 162 ~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 162 AGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp TTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 6999999999998842 12344677888888765 456677777654
No 352
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=78.12 E-value=0.77 Score=39.54 Aligned_cols=15 Identities=27% Similarity=0.386 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|.||||||+.+...
T Consensus 40 sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 40 QGSGKSFTSIQIYNH 54 (290)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999998873
No 353
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=78.08 E-value=0.87 Score=37.41 Aligned_cols=14 Identities=43% Similarity=0.665 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||.+.+..
T Consensus 25 sGsGKSTLlk~L~g 38 (219)
T 1s96_A 25 SGAGKSSLIQALLK 38 (219)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhc
Confidence 69999999999987
No 354
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=77.96 E-value=0.85 Score=39.74 Aligned_cols=14 Identities=43% Similarity=0.480 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||++.+..
T Consensus 99 sGsGKSTL~~~L~g 112 (312)
T 3aez_A 99 VAVGKSTTARVLQA 112 (312)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCchHHHHHHHHHh
Confidence 59999999999987
No 355
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=77.96 E-value=0.84 Score=38.08 Aligned_cols=15 Identities=33% Similarity=0.255 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|+||||+|+.+.+
T Consensus 37 ~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 37 APGSGKGTQSLNLKK 51 (243)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 356
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=77.87 E-value=0.85 Score=37.12 Aligned_cols=15 Identities=33% Similarity=0.441 Sum_probs=13.0
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 12 ~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 12 GIGSGKSTVANAFAD 26 (218)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999965
No 357
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=77.86 E-value=2.4 Score=39.21 Aligned_cols=45 Identities=29% Similarity=0.226 Sum_probs=33.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCC-CHHHHHHHHHHh
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDF-DVFRITKTMLQS 47 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~l~~~il~~ 47 (348)
+|+|||+|+..+.++. .+.+-+.++++-+++.. +..++.+++...
T Consensus 174 ~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 174 AGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp SSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 5999999999998842 22345788899898776 466677777654
No 358
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.79 E-value=0.7 Score=42.45 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=15.2
Q ss_pred CCCcHHHHHHHHhcchhhhc
Q 043181 2 GGVGKTTLAQLLCNNVKVKN 21 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~ 21 (348)
+|.|||+||+++++ +...
T Consensus 252 PGTGKTlLAkAiA~--e~~~ 269 (467)
T 4b4t_H 252 PGTGKTLCARAVAN--RTDA 269 (467)
T ss_dssp TTSSHHHHHHHHHH--HHTC
T ss_pred CCCcHHHHHHHHHh--ccCC
Confidence 69999999999999 4443
No 359
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.76 E-value=0.74 Score=42.12 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.|||+||+++++
T Consensus 224 PGtGKTllAkAiA~ 237 (437)
T 4b4t_L 224 PGTGKTLLAKAVAA 237 (437)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 69999999999999
No 360
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=77.75 E-value=0.84 Score=34.68 Aligned_cols=15 Identities=53% Similarity=0.822 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+.++.+.
T Consensus 12 ~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 12 GGVGKSALTIQLIQN 26 (166)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 699999999999764
No 361
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=77.66 E-value=2.4 Score=34.67 Aligned_cols=15 Identities=33% Similarity=0.521 Sum_probs=13.6
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
..|.||||+++.+.+
T Consensus 13 ~~g~GKst~~~~l~~ 27 (216)
T 3tmk_A 13 LDRTGKTTQCNILYK 27 (216)
T ss_dssp CSSSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999998
No 362
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=77.48 E-value=0.86 Score=38.17 Aligned_cols=15 Identities=13% Similarity=0.251 Sum_probs=13.3
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 30 ~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 30 GTASGKSSVCAKIVQ 44 (252)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 363
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=77.44 E-value=0.54 Score=38.06 Aligned_cols=15 Identities=40% Similarity=0.596 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|.||||+|+.+...
T Consensus 9 ~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 9 DGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999999873
No 364
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=77.40 E-value=0.63 Score=41.26 Aligned_cols=15 Identities=47% Similarity=0.815 Sum_probs=13.8
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+++.++.
T Consensus 32 ~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 32 SPGSGKSTIAEELCQ 46 (359)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 579999999999988
No 365
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=77.29 E-value=2.5 Score=37.65 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=25.4
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVF 38 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~ 38 (348)
+|+||||||.++.......+ ..++|++....++..
T Consensus 83 pGsGKTtlal~la~~~~~~g--~~vlyi~~E~s~~~~ 117 (366)
T 1xp8_A 83 ESGGKTTLALAIVAQAQKAG--GTCAFIDAEHALDPV 117 (366)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEESSCCCCHH
T ss_pred CCCChHHHHHHHHHHHHHCC--CeEEEEECCCChhHH
Confidence 69999999999887433222 368899887766644
No 366
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=77.15 E-value=0.92 Score=36.39 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+.+
T Consensus 20 ~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 20 KIGTGKSTVCEILKN 34 (192)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 469999999999987
No 367
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=77.11 E-value=0.95 Score=35.68 Aligned_cols=15 Identities=47% Similarity=0.572 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||++.+...
T Consensus 15 sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 15 SGTGKTTLLKKLIPA 29 (174)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 699999999999883
No 368
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=77.09 E-value=0.91 Score=36.43 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=13.4
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
..|.||||+|+.+..
T Consensus 10 ~~GsGKst~~~~la~ 24 (208)
T 3ake_A 10 PSASGKSSVARRVAA 24 (208)
T ss_dssp STTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 369
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=77.05 E-value=0.98 Score=36.13 Aligned_cols=17 Identities=47% Similarity=0.552 Sum_probs=14.4
Q ss_pred CCCcHHHHHHHHhcchh
Q 043181 2 GGVGKTTLAQLLCNNVK 18 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (348)
.|+|||||++.+.....
T Consensus 10 nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 10 PGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CSSCHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhhcc
Confidence 59999999999998443
No 370
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=77.04 E-value=0.94 Score=39.12 Aligned_cols=16 Identities=38% Similarity=0.335 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
+|+||||++..+....
T Consensus 114 ~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 114 TGAGKTTTLAKLAAIS 129 (296)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 6999999999998743
No 371
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=76.99 E-value=0.91 Score=39.68 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=18.5
Q ss_pred CCCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 1 MGGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
++|+||||||.++... .+ ..++|++.
T Consensus 131 pPGsGKTtLAlqlA~~---~G--~~VlyIs~ 156 (331)
T 2vhj_A 131 KGNSGKTPLVHALGEA---LG--GKDKYATV 156 (331)
T ss_dssp SCSSSHHHHHHHHHHH---HH--TTSCCEEE
T ss_pred CCCCCHHHHHHHHHHh---CC--CCEEEEEe
Confidence 4799999999999873 21 13456666
No 372
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=76.97 E-value=1 Score=34.65 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 12 ~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 12 PNVGKSTIFNALTGE 26 (165)
T ss_dssp TTSSHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999873
No 373
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=76.93 E-value=0.9 Score=36.08 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||||.+.+...
T Consensus 38 ~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 38 SGVGKSNLLSRFTRN 52 (191)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998864
No 374
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=76.75 E-value=0.98 Score=37.64 Aligned_cols=14 Identities=21% Similarity=0.404 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||++.+..
T Consensus 34 ~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 34 TASGKSTVCEKIME 47 (245)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999987
No 375
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=76.54 E-value=0.53 Score=42.61 Aligned_cols=14 Identities=43% Similarity=0.574 Sum_probs=6.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
||+||||+|..+..
T Consensus 121 GGvGKTT~a~nLA~ 134 (403)
T 3ez9_A 121 GGVSKTVSTVTLAH 134 (403)
T ss_dssp -------CHHHHHH
T ss_pred CCchHHHHHHHHHH
Confidence 89999999998887
No 376
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=76.52 E-value=0.98 Score=34.28 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 10 ~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 10 PNVGKSSLFNRLLKK 24 (161)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999998864
No 377
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.51 E-value=0.88 Score=42.72 Aligned_cols=46 Identities=7% Similarity=0.121 Sum_probs=28.3
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCC-CchhHHHHHh
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNG-LPLASEILGG 114 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~G-lPLal~~ig~ 114 (348)
+++.++..+++...+...... ..+ +....|++.++| ++-++..+..
T Consensus 208 ~~~~~~~~~~L~~i~~~~~~~-i~~---~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 208 RPDANSIKSRLMTIAIREKFK-LDP---NVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp CCCHHHHHHHHHHHHHHHTCC-CCT---THHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCHHHHHHHHHHHHHHcCCC-CCH---HHHHHHHHHcCCcHHHHHHHHHH
Confidence 688888888887765432211 111 346678888888 5555655543
No 378
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=76.38 E-value=0.99 Score=37.47 Aligned_cols=14 Identities=43% Similarity=0.598 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+++.+.+
T Consensus 11 ~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 11 IAVGKSTFVKLLTK 24 (241)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999988
No 379
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=76.23 E-value=1 Score=40.36 Aligned_cols=28 Identities=18% Similarity=0.149 Sum_probs=19.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
||+||||+|.++......++ ..++.|+.
T Consensus 11 GG~GKTt~a~~la~~la~~g--~~vllvd~ 38 (374)
T 3igf_A 11 SGVARTKIAIAAAKLLASQG--KRVLLAGL 38 (374)
T ss_dssp BHHHHHHHHHHHHHHHHHTT--CCEEEEEC
T ss_pred CCCcHHHHHHHHHHHHHHCC--CCeEEEeC
Confidence 89999999999887332222 24566666
No 380
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=75.91 E-value=0.84 Score=41.05 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+|||++|+++++
T Consensus 157 pGtGKT~la~aia~ 170 (389)
T 3vfd_A 157 PGNGKTMLAKAVAA 170 (389)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999988
No 381
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=75.85 E-value=2.4 Score=38.88 Aligned_cols=43 Identities=16% Similarity=0.135 Sum_probs=27.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSI 48 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l 48 (348)
+|+||||||.+++.+...++ ..++|++.- ....++...++...
T Consensus 206 pG~GKTtlal~ia~~~a~~g--~~vl~fSlE--ms~~ql~~R~~~~~ 248 (444)
T 3bgw_A 206 PSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVTA 248 (444)
T ss_dssp SSSSHHHHHHHHHHHHHHTT--CEEEEECSS--SCTTHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHcC--CEEEEEECC--CCHHHHHHHHHHHH
Confidence 69999999999988544432 245555443 34556666665544
No 382
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=75.82 E-value=1.1 Score=38.59 Aligned_cols=41 Identities=17% Similarity=0.174 Sum_probs=23.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCC-eeEEEEcCCCCCHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFH-LETWVYLFEDFDVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~~~~~~~~~l~~~il~ 46 (348)
.|+|||||++.+....... -. .++|+.... ....+.+.+..
T Consensus 44 ~G~GKTTl~~~ia~~~~~~--~G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 44 SGMGKSTFVRQQALQWGTA--MGKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TTSSHHHHHHHHHHHHHHT--SCCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH--cCCeEEEEeCcC--CHHHHHHHHHH
Confidence 6999999999998843332 12 345555432 33444444433
No 383
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=75.71 E-value=1 Score=35.46 Aligned_cols=15 Identities=53% Similarity=0.822 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+.++.+.
T Consensus 30 ~~~GKSsli~~l~~~ 44 (190)
T 3con_A 30 GGVGKSALTIQLIQN 44 (190)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999864
No 384
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=75.65 E-value=1.2 Score=35.01 Aligned_cols=15 Identities=33% Similarity=0.463 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||...+.+.
T Consensus 16 ~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 16 PNVGKSTIFNALTGE 30 (188)
T ss_dssp TTSSHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999873
No 385
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=75.59 E-value=1 Score=35.93 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||||.+.+...
T Consensus 14 ~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 14 SGVGKSNLLSRFTRN 28 (199)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 599999999999874
No 386
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=75.48 E-value=1.1 Score=39.26 Aligned_cols=15 Identities=40% Similarity=0.452 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|+||||||+.+..
T Consensus 13 ptGsGKTtla~~La~ 27 (323)
T 3crm_A 13 PTAAGKTDLAMALAD 27 (323)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 369999999999987
No 387
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=75.30 E-value=1.1 Score=39.37 Aligned_cols=14 Identities=29% Similarity=0.712 Sum_probs=13.0
Q ss_pred CCcHHHHHHHHhcc
Q 043181 3 GVGKTTLAQLLCNN 16 (348)
Q Consensus 3 GiGKTtLa~~v~~~ 16 (348)
|+||||+++.+.+.
T Consensus 17 GaGKTT~~~~La~~ 30 (334)
T 1p6x_A 17 GIGKSTTGRVMASA 30 (334)
T ss_dssp TSSHHHHHHHHHSG
T ss_pred CCCHHHHHHHHHHH
Confidence 99999999999983
No 388
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=75.29 E-value=1.1 Score=36.79 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||.+.+..- .. -..+.+++
T Consensus 39 nGsGKSTLl~~l~Gl--~~-p~~G~i~~ 63 (224)
T 2pcj_A 39 SGSGKSTLLYILGLL--DA-PTEGKVFL 63 (224)
T ss_dssp TTSCHHHHHHHHTTS--SC-CSEEEEEE
T ss_pred CCCCHHHHHHHHhcC--CC-CCceEEEE
Confidence 599999999999872 21 22355555
No 389
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=75.26 E-value=1.5 Score=36.17 Aligned_cols=40 Identities=25% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTM 44 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~i 44 (348)
+|+||||+|.++..+...+. -..+++++... ....+.+.+
T Consensus 39 pG~GKT~l~l~~~~~~~~~~-~~~v~~~s~E~--~~~~~~~~~ 78 (251)
T 2zts_A 39 TGTGKTTFAAQFIYKGAEEY-GEPGVFVTLEE--RARDLRREM 78 (251)
T ss_dssp TTSSHHHHHHHHHHHHHHHH-CCCEEEEESSS--CHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhc-CCCceeecccC--CHHHHHHHH
Confidence 69999999998765322222 23455665543 344444443
No 390
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=75.22 E-value=2.2 Score=40.66 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=19.9
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFE 33 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~ 33 (348)
||+||||+|.++......++ ..++.|+...
T Consensus 17 GGvGKTT~a~~lA~~lA~~G--~rVLlvd~D~ 46 (589)
T 1ihu_A 17 GGVGKTSISCATAIRLAEQG--KRVLLVSTDP 46 (589)
T ss_dssp TTSSHHHHHHHHHHHHHHTT--CCEEEEECCT
T ss_pred CcCHHHHHHHHHHHHHHHCC--CcEEEEECCC
Confidence 89999999999887433222 2355565543
No 391
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=75.20 E-value=1.1 Score=36.49 Aligned_cols=15 Identities=33% Similarity=0.304 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||+.++...
T Consensus 39 ~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 39 IGSGKTLLIERTIER 53 (221)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999998873
No 392
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=75.10 E-value=1 Score=41.39 Aligned_cols=14 Identities=36% Similarity=0.570 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+|||+||+++++
T Consensus 176 pGtGKT~lA~aia~ 189 (444)
T 2zan_A 176 PGTGKSYLAKAVAT 189 (444)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 393
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=75.09 E-value=1.1 Score=38.05 Aligned_cols=14 Identities=50% Similarity=0.748 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||||.++..
T Consensus 39 ~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 39 GGAGKSMLALQLAA 52 (279)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999987
No 394
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=75.00 E-value=1.2 Score=40.52 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=13.7
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
++|.||||+|+.+..
T Consensus 266 ~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 266 FPGAGKSTFIQEHLV 280 (416)
T ss_dssp CTTSSHHHHHHHHTG
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999987
No 395
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=74.96 E-value=1.2 Score=37.07 Aligned_cols=15 Identities=27% Similarity=0.496 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
.+|.||||+|+.+..
T Consensus 17 ~~GsGKsTla~~la~ 31 (233)
T 3r20_A 17 PAGTGKSSVSRGLAR 31 (233)
T ss_dssp CTTSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 379999999999987
No 396
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=74.94 E-value=1.2 Score=38.03 Aligned_cols=15 Identities=47% Similarity=0.689 Sum_probs=13.1
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|.||||+|+.+..
T Consensus 83 ~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 83 ISGSGKSSVAQRLKN 97 (281)
T ss_dssp CTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 479999999999973
No 397
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=74.90 E-value=1 Score=39.85 Aligned_cols=45 Identities=4% Similarity=-0.079 Sum_probs=29.0
Q ss_pred CCChHHHHHHHHHhhcCCCCCCcChhHHHHHHHHHHHcCCCchhHHHHH
Q 043181 65 KWSDDDCLCVFTQRSSRRTDFNMHMHLKEIGEKIVKKCNGLPLASEILG 113 (348)
Q Consensus 65 ~l~~~~a~~Lf~~~a~~~~~~~~~~~~~~~~~~i~~~c~GlPLal~~ig 113 (348)
+++.++...++...+...+. ... .+....+++.++|.|..+..+.
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~-~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHI-AHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 78888888888765522111 111 2456778888999998765543
No 398
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=74.77 E-value=0.82 Score=37.15 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.||||+|.++++
T Consensus 67 PGtGKTt~a~ala~ 80 (212)
T 1tue_A 67 ANTGKSYFGMSFIH 80 (212)
T ss_dssp GGGCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999988
No 399
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.73 E-value=0.94 Score=41.19 Aligned_cols=14 Identities=50% Similarity=0.686 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|.|||.||+++++
T Consensus 225 PGTGKTlLAkAiA~ 238 (437)
T 4b4t_I 225 PGTGKTLLAKAVAN 238 (437)
T ss_dssp TTTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHH
Confidence 69999999999998
No 400
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=74.68 E-value=1.1 Score=39.05 Aligned_cols=14 Identities=57% Similarity=0.975 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+++.+
T Consensus 57 ~G~GKT~la~~la~ 70 (324)
T 3u61_B 57 PGTGKTTVAKALCH 70 (324)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999988
No 401
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=74.66 E-value=1.1 Score=41.82 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=14.3
Q ss_pred CCCCcHHHHHHHHhcc
Q 043181 1 MGGVGKTTLAQLLCNN 16 (348)
Q Consensus 1 mgGiGKTtLa~~v~~~ 16 (348)
++|.||||+|+++...
T Consensus 403 lsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 403 SLTVSREQLSIALLST 418 (511)
T ss_dssp TCCSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 4799999999999983
No 402
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=74.56 E-value=1.2 Score=38.63 Aligned_cols=27 Identities=26% Similarity=0.161 Sum_probs=18.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
+|+||||+++.+..-.... .+.+++.-
T Consensus 111 nGsGKTTll~~Lagll~~~---~g~V~l~g 137 (304)
T 1rj9_A 111 NGVGKTTTIAKLGRYYQNL---GKKVMFCA 137 (304)
T ss_dssp TTSSHHHHHHHHHHHHHTT---TCCEEEEC
T ss_pred CCCcHHHHHHHHHHHHHhc---CCEEEEEe
Confidence 6999999999998733222 34555543
No 403
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=74.45 E-value=1.2 Score=39.10 Aligned_cols=13 Identities=62% Similarity=0.838 Sum_probs=12.5
Q ss_pred CCcHHHHHHHHhc
Q 043181 3 GVGKTTLAQLLCN 15 (348)
Q Consensus 3 GiGKTtLa~~v~~ 15 (348)
|+||||+++.+.+
T Consensus 14 GsGKTT~~~~La~ 26 (331)
T 1e2k_A 14 GMGKTTTTQLLVA 26 (331)
T ss_dssp TSSHHHHHHHHTC
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999988
No 404
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.39 E-value=0.92 Score=39.99 Aligned_cols=14 Identities=36% Similarity=0.451 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+.+.+
T Consensus 45 ~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 45 NGTGKKTRCMALLE 58 (354)
T ss_dssp TTSSHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999877
No 405
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.35 E-value=1.1 Score=39.42 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+||||+|+.+.+.
T Consensus 55 ~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 55 PGTGKTSTIVALARE 69 (340)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 599999999999883
No 406
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.26 E-value=1.1 Score=36.50 Aligned_cols=15 Identities=40% Similarity=0.392 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|.|||||++.+..-
T Consensus 31 nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 31 AGSGKTYLAMAKAVQ 45 (208)
T ss_dssp TTSSTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcC
Confidence 599999999999874
No 407
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=74.11 E-value=0.83 Score=39.96 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+|||+||+++.+
T Consensus 55 pGtGKT~la~~la~ 68 (331)
T 2r44_A 55 PGLAKTLSVNTLAK 68 (331)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 69999999999987
No 408
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=73.97 E-value=1.4 Score=33.96 Aligned_cols=15 Identities=53% Similarity=0.811 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 13 ~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 13 PGVGKTSLASLFAGK 27 (175)
T ss_dssp TTSSHHHHHHHHHCC
T ss_pred CCccHHHHHHHHhcC
Confidence 599999999999874
No 409
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=73.95 E-value=1.2 Score=33.96 Aligned_cols=15 Identities=40% Similarity=0.855 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 14 ~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 14 GAVGKSSMIQRYCKG 28 (168)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999998864
No 410
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=73.91 E-value=1.2 Score=40.83 Aligned_cols=14 Identities=50% Similarity=0.736 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|++++.
T Consensus 59 pGtGKT~lar~lA~ 72 (444)
T 1g41_A 59 TGVGKTEIARRLAK 72 (444)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 411
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=73.84 E-value=0.92 Score=38.25 Aligned_cols=14 Identities=29% Similarity=0.415 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||+|+.+.+
T Consensus 33 ~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 33 IAAGKSTFVNILKQ 46 (263)
T ss_dssp TTSSHHHHHTTTGG
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999988
No 412
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=73.72 E-value=1.1 Score=41.60 Aligned_cols=14 Identities=50% Similarity=0.691 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||+|+.+++
T Consensus 210 pG~GKT~la~~la~ 223 (468)
T 3pxg_A 210 PGVGKTAIAEGLAQ 223 (468)
T ss_dssp TTTTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 413
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=73.68 E-value=1.3 Score=38.24 Aligned_cols=15 Identities=47% Similarity=0.408 Sum_probs=13.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+||||++..++..
T Consensus 107 ~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 107 QGSGKTTTAAKLALY 121 (295)
T ss_dssp TTTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999999984
No 414
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=73.65 E-value=1.2 Score=38.60 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||++|+++++.
T Consensus 34 ~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 34 SGTGKELVARALHAC 48 (304)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHh
Confidence 599999999999983
No 415
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=73.64 E-value=1.3 Score=36.70 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=18.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (348)
.|.|||||.+.+..-.. -..+.+++.
T Consensus 40 nGsGKSTLl~~l~Gl~~---p~~G~I~~~ 65 (235)
T 3tif_A 40 SGSGKSTMLNIIGCLDK---PTEGEVYID 65 (235)
T ss_dssp TTSSHHHHHHHHTTSSC---CSEEEEEET
T ss_pred CCCcHHHHHHHHhcCCC---CCceEEEEC
Confidence 59999999999987221 223566653
No 416
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=73.63 E-value=1.2 Score=41.49 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||+||+++++
T Consensus 50 PGtGKT~LAraLa~ 63 (500)
T 3nbx_X 50 PGIAKSLIARRLKF 63 (500)
T ss_dssp SSSSHHHHHHHGGG
T ss_pred chHHHHHHHHHHHH
Confidence 69999999999987
No 417
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=73.60 E-value=1.3 Score=36.85 Aligned_cols=14 Identities=29% Similarity=0.646 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||.+.+..
T Consensus 33 nGsGKSTLl~~l~G 46 (240)
T 2onk_A 33 TGAGKSVFLELIAG 46 (240)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
Confidence 59999999999988
No 418
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=73.42 E-value=1.4 Score=38.69 Aligned_cols=15 Identities=33% Similarity=0.430 Sum_probs=13.5
Q ss_pred CCCCcHHHHHHHHhc
Q 043181 1 MGGVGKTTLAQLLCN 15 (348)
Q Consensus 1 mgGiGKTtLa~~v~~ 15 (348)
+.|+||||||..++.
T Consensus 48 PTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 48 ATGTGKSRLSIDLAA 62 (339)
T ss_dssp STTSSHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHH
Confidence 359999999999998
No 419
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=73.32 E-value=0.78 Score=40.33 Aligned_cols=14 Identities=36% Similarity=0.544 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+|||++|+++++
T Consensus 54 ~GtGKT~la~~la~ 67 (350)
T 1g8p_A 54 RGTGKSTAVRALAA 67 (350)
T ss_dssp GGGCTTHHHHHHHH
T ss_pred CCccHHHHHHHHHH
Confidence 59999999999998
No 420
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=72.99 E-value=1.1 Score=36.88 Aligned_cols=14 Identities=36% Similarity=0.318 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.||||+++.+..
T Consensus 29 ~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 29 IGSGKTTYLNHFEK 42 (230)
T ss_dssp TTSCHHHHHHTTGG
T ss_pred CCCCHHHHHHHHHh
Confidence 59999999999988
No 421
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=72.95 E-value=1.3 Score=38.96 Aligned_cols=14 Identities=29% Similarity=0.337 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||||+.++.
T Consensus 16 tgSGKTtla~~La~ 29 (340)
T 3d3q_A 16 TASGKTELSIEVAK 29 (340)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHH
Confidence 69999999999987
No 422
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=72.93 E-value=1.4 Score=38.54 Aligned_cols=14 Identities=36% Similarity=0.439 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.||||+|+.+..
T Consensus 101 sGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 101 VAVGKSTTSRVLKA 114 (321)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999876
No 423
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=72.88 E-value=1.5 Score=33.51 Aligned_cols=15 Identities=40% Similarity=0.731 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 12 ~~~GKssli~~l~~~ 26 (172)
T 2erx_A 12 GGVGKSSLVLRFVKG 26 (172)
T ss_dssp TTSSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999863
No 424
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=72.88 E-value=1.4 Score=35.94 Aligned_cols=14 Identities=43% Similarity=0.745 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||.+.++.
T Consensus 44 NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 44 NGIGKTTLLKTIST 57 (214)
T ss_dssp TTSSHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhc
Confidence 59999999999988
No 425
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=72.88 E-value=1.5 Score=33.51 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 11 ~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 11 PGVGKSALARIFGGV 25 (166)
T ss_dssp TTSSHHHHHHHHCCC
T ss_pred CCCCHHHHHHHHcCc
Confidence 699999999998763
No 426
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=72.84 E-value=1.4 Score=36.57 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||++.+..
T Consensus 40 nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 40 VGCGKSSLLSALLA 53 (237)
T ss_dssp TTSSHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhc
Confidence 59999999999988
No 427
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=72.84 E-value=1.2 Score=40.94 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||++|+++.+.
T Consensus 72 pGtGKT~la~ala~~ 86 (456)
T 2c9o_A 72 PGTGKTALALAIAQE 86 (456)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHH
Confidence 699999999999993
No 428
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=72.80 E-value=1.3 Score=41.03 Aligned_cols=15 Identities=40% Similarity=0.585 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|.||||||+++++.
T Consensus 58 pGtGKT~Laraia~~ 72 (476)
T 2ce7_A 58 PGTGKTLLARAVAGE 72 (476)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999973
No 429
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=72.79 E-value=0.79 Score=36.04 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHHhcchh
Q 043181 2 GGVGKTTLAQLLCNNVK 18 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~ 18 (348)
+|.|||||++.+..-..
T Consensus 11 SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 11 SDSGKTTLITRMMPILR 27 (171)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhh
Confidence 58999999999988433
No 430
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.78 E-value=2.8 Score=37.02 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=22.2
Q ss_pred CCCcHHHHHHHHhcchhhh---cCCCee-EEEEcCCCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVK---NRFHLE-TWVYLFEDFD 36 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~---~~F~~~-~wv~~~~~~~ 36 (348)
.|.|||||++++....... +...+. +|++....+.
T Consensus 140 ~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~ 178 (349)
T 1pzn_A 140 FGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 178 (349)
T ss_dssp TTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCC
T ss_pred CCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCC
Confidence 6999999999998732111 111234 8887755443
No 431
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=72.66 E-value=1.4 Score=37.19 Aligned_cols=25 Identities=24% Similarity=0.137 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||.+.+..- .. -..+.+++
T Consensus 41 nGsGKSTLlk~l~Gl--~~-p~~G~i~~ 65 (262)
T 1b0u_A 41 SGSGKSTFLRCINFL--EK-PSEGAIIV 65 (262)
T ss_dssp TTSSHHHHHHHHTTS--SC-CSEEEEEE
T ss_pred CCCCHHHHHHHHhcC--CC-CCCcEEEE
Confidence 599999999999873 21 22356655
No 432
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.59 E-value=1.5 Score=36.58 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||.+.+..- .+ -..+.+++
T Consensus 41 nGsGKSTLl~~l~Gl--~~-p~~G~i~~ 65 (240)
T 1ji0_A 41 NGAGKTTTLSAIAGL--VR-AQKGKIIF 65 (240)
T ss_dssp TTSSHHHHHHHHTTS--SC-CSEEEEEE
T ss_pred CCCCHHHHHHHHhCC--CC-CCCceEEE
Confidence 599999999999983 21 22356655
No 433
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=72.37 E-value=1.4 Score=33.45 Aligned_cols=15 Identities=40% Similarity=0.707 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 13 ~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 13 GGVGKSALTLQFMYD 27 (168)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 599999999998764
No 434
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=72.36 E-value=1.5 Score=36.79 Aligned_cols=14 Identities=43% Similarity=0.824 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||.+.+..
T Consensus 38 nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 38 NGAGKSTLGKILAG 51 (250)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
Confidence 59999999999998
No 435
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=72.21 E-value=1.5 Score=34.94 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.++
T Consensus 34 ~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 34 DNAGKTTLLHMLKDD 48 (198)
T ss_dssp TTSSHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999863
No 436
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=72.07 E-value=2.5 Score=35.82 Aligned_cols=29 Identities=24% Similarity=0.007 Sum_probs=19.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..+.. .....=..++.|+..
T Consensus 92 gG~GKTt~a~nLA~--~lA~~G~rVLLID~D 120 (271)
T 3bfv_A 92 PGAGKSTIAANLAV--AYAQAGYKTLIVDGD 120 (271)
T ss_dssp TTSSHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CCCcHHHHHHHHHH--HHHhCCCeEEEEeCC
Confidence 79999999999988 333322245566553
No 437
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=72.05 E-value=1.5 Score=37.83 Aligned_cols=14 Identities=43% Similarity=0.586 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||.+.++.
T Consensus 27 nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 27 SGLGKSTLINSLFL 40 (301)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCCCHHHHHHHHhC
Confidence 59999999999887
No 438
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=72.04 E-value=1.3 Score=41.33 Aligned_cols=14 Identities=50% Similarity=0.710 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||||+++++
T Consensus 73 pGtGKTtLaraIa~ 86 (499)
T 2dhr_A 73 PGVGKTHLARAVAG 86 (499)
T ss_dssp SSSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999987
No 439
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=71.98 E-value=1.5 Score=38.32 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+||||++..+...
T Consensus 114 ~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 114 NGTGKTTSLAKMANY 128 (320)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 799999999999883
No 440
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=71.93 E-value=1.5 Score=36.88 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=17.5
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||.+.+..- +. --.+.+++
T Consensus 42 nGsGKSTLlk~l~Gl--~~-p~~G~i~~ 66 (257)
T 1g6h_A 42 NGSGKSTLINVITGF--LK-ADEGRVYF 66 (257)
T ss_dssp TTSSHHHHHHHHTTS--SC-CSEEEEEE
T ss_pred CCCCHHHHHHHHhCC--CC-CCCcEEEE
Confidence 599999999999883 21 12355655
No 441
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=71.93 E-value=1.5 Score=37.94 Aligned_cols=32 Identities=28% Similarity=0.288 Sum_probs=20.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFD 36 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~ 36 (348)
.|+||||+++.++.. .+.. .+.+.+.-.+.+.
T Consensus 109 nGsGKTTll~~Lag~--l~~~-~g~V~l~g~d~~r 140 (302)
T 3b9q_A 109 NGGGKTTSLGKLAHR--LKNE-GTKVLMAAGDTFR 140 (302)
T ss_dssp TTSCHHHHHHHHHHH--HHHT-TCCEEEECCCCSC
T ss_pred CCCCHHHHHHHHHHH--HHHc-CCeEEEEeecccc
Confidence 699999999999983 3321 3555554444443
No 442
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=71.88 E-value=1.5 Score=37.05 Aligned_cols=25 Identities=24% Similarity=0.109 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||.+.+..- .. -..+.+++
T Consensus 59 NGsGKSTLlk~l~Gl--~~-p~~G~I~~ 83 (263)
T 2olj_A 59 SGSGKSTFLRCLNLL--ED-FDEGEIII 83 (263)
T ss_dssp TTSSHHHHHHHHTTS--SC-CSEEEEEE
T ss_pred CCCcHHHHHHHHHcC--CC-CCCcEEEE
Confidence 599999999999883 22 12356655
No 443
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=71.86 E-value=1.3 Score=43.79 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|.|||+||+++++.
T Consensus 247 PGTGKT~LAraiA~e 261 (806)
T 3cf2_A 247 PGTGKTLIARAVANE 261 (806)
T ss_dssp TTSCHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH
Confidence 699999999999984
No 444
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=71.86 E-value=2.7 Score=38.55 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=29.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCC----eeEEEEcCCCC-CHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFH----LETWVYLFEDF-DVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~~~~~-~~~~l~~~il~ 46 (348)
+|+|||||+.++.+. ...+-+ .++++.+++.. .+.++.+++..
T Consensus 160 ~G~GKt~L~~~Ia~~--~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~ 207 (465)
T 3vr4_D 160 SGLPHKELAAQIARQ--ATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQ 207 (465)
T ss_dssp TTSCHHHHHHHHHHH--CBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred CCcChHHHHHHHHHH--HHhccCCCceEEEEEEecCCcHHHHHHHHHHhh
Confidence 599999999999983 333224 57778887654 45566666544
No 445
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=71.73 E-value=1.5 Score=37.09 Aligned_cols=26 Identities=35% Similarity=0.457 Sum_probs=18.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (348)
.|.|||||++.+..- .. -..+.+++.
T Consensus 46 nGsGKSTLl~~l~Gl--~~-p~~G~I~~~ 71 (266)
T 4g1u_C 46 NGAGKSTLLRLLTGY--LS-PSHGECHLL 71 (266)
T ss_dssp TTSCHHHHHHHHTSS--SC-CSSCEEEET
T ss_pred CCCcHHHHHHHHhcC--CC-CCCcEEEEC
Confidence 599999999999982 22 224666653
No 446
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=71.69 E-value=1.6 Score=34.19 Aligned_cols=15 Identities=40% Similarity=0.543 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 25 ~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 25 DNAGKTTLLKQLASE 39 (181)
T ss_dssp TTSSHHHHHHHHCCS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999999874
No 447
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=71.63 E-value=2.1 Score=36.15 Aligned_cols=14 Identities=29% Similarity=0.425 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.||||+++.+..
T Consensus 34 ~GsGKSTll~~l~g 47 (261)
T 2eyu_A 34 TGSGKSTTIASMID 47 (261)
T ss_dssp TTCSHHHHHHHHHH
T ss_pred CCccHHHHHHHHHH
Confidence 59999999999987
No 448
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=71.62 E-value=1.3 Score=41.76 Aligned_cols=14 Identities=50% Similarity=0.764 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|+||||||+.+++
T Consensus 117 ~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 117 PGVGKTSLAKSIAK 130 (543)
T ss_dssp SSSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999998
No 449
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=71.50 E-value=1.5 Score=39.07 Aligned_cols=13 Identities=62% Similarity=0.838 Sum_probs=12.5
Q ss_pred CCcHHHHHHHHhc
Q 043181 3 GVGKTTLAQLLCN 15 (348)
Q Consensus 3 GiGKTtLa~~v~~ 15 (348)
|+||||+++.+.+
T Consensus 59 GsGKTT~~~~Lae 71 (376)
T 1of1_A 59 GMGKTTTTQLLVA 71 (376)
T ss_dssp TSSHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH
Confidence 9999999999998
No 450
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=71.41 E-value=1.4 Score=37.94 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+||||+|+++++.
T Consensus 47 ~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 47 PGTGKTATAIALARD 61 (319)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHH
Confidence 699999999999883
No 451
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=71.36 E-value=1.6 Score=37.01 Aligned_cols=14 Identities=43% Similarity=0.674 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||.+.+..
T Consensus 55 NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 55 NGSGKSTLSATLAG 68 (267)
T ss_dssp TTSSHHHHHHHHHT
T ss_pred CCCCHHHHHHHHhC
Confidence 59999999999998
No 452
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=71.33 E-value=1.6 Score=36.37 Aligned_cols=25 Identities=28% Similarity=0.203 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||.+.+..- .. -..+.+++
T Consensus 37 nGsGKSTLl~~l~Gl--~~-p~~G~i~~ 61 (243)
T 1mv5_A 37 SGGGKSTIFSLLERF--YQ-PTAGEITI 61 (243)
T ss_dssp TTSSHHHHHHHHTTS--SC-CSBSCEEE
T ss_pred CCCCHHHHHHHHhcC--CC-CCCcEEEE
Confidence 599999999999983 21 22455555
No 453
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=71.31 E-value=1.6 Score=36.50 Aligned_cols=26 Identities=23% Similarity=0.227 Sum_probs=18.1
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVY 30 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~ 30 (348)
.|.|||||.+.+..- .. -..+.+++.
T Consensus 44 nGsGKSTLl~~l~Gl--~~-p~~G~I~i~ 69 (247)
T 2ff7_A 44 SGSGKSTLTKLIQRF--YI-PENGQVLID 69 (247)
T ss_dssp TTSSHHHHHHHHTTS--SC-CSEEEEEET
T ss_pred CCCCHHHHHHHHhcC--CC-CCCcEEEEC
Confidence 599999999999883 21 224566653
No 454
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=71.28 E-value=1.6 Score=37.20 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=17.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||++.+..- + .-..+.+++
T Consensus 43 nGsGKSTLl~~l~Gl--~-~p~~G~I~~ 67 (275)
T 3gfo_A 43 NGVGKSTLFQNFNGI--L-KPSSGRILF 67 (275)
T ss_dssp TTSSHHHHHHHHTTS--S-CCSEEEEEE
T ss_pred CCCCHHHHHHHHHcC--C-CCCCeEEEE
Confidence 599999999999872 2 223456655
No 455
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=71.28 E-value=1.7 Score=33.97 Aligned_cols=15 Identities=40% Similarity=0.490 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 10 ~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 10 SNVGKSTLIYRLTGK 24 (190)
T ss_dssp TTSSHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHhCc
Confidence 699999999998874
No 456
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=71.26 E-value=1.6 Score=35.97 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||.+.+..
T Consensus 43 nGsGKSTLl~~l~G 56 (229)
T 2pze_A 43 TGAGKTSLLMMIMG 56 (229)
T ss_dssp TTSSHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhC
Confidence 59999999999988
No 457
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=71.10 E-value=1.8 Score=33.66 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++...
T Consensus 13 ~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 13 PNAGKSSLLNALAGR 27 (172)
T ss_dssp TTSSHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999874
No 458
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=70.96 E-value=1.6 Score=35.17 Aligned_cols=14 Identities=43% Similarity=0.548 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||||.++..
T Consensus 43 sGsGKStLA~~La~ 56 (205)
T 2qmh_A 43 SGVGKSETALELVQ 56 (205)
T ss_dssp CTTTTHHHHHHHHT
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999987
No 459
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=70.95 E-value=1.6 Score=37.69 Aligned_cols=29 Identities=14% Similarity=0.056 Sum_probs=19.3
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..++. .....=..++.|+..
T Consensus 114 gG~GKTtva~nLA~--~lA~~G~rVLLID~D 142 (299)
T 3cio_A 114 PDSGKTFVSSTLAA--VIAQSDQKVLFIDAD 142 (299)
T ss_dssp SSSCHHHHHHHHHH--HHHHTTCCEEEEECC
T ss_pred CCCChHHHHHHHHH--HHHhCCCcEEEEECC
Confidence 79999999999988 333221235556543
No 460
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=70.94 E-value=1.7 Score=34.03 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||+.+++-
T Consensus 35 NGsGKStll~ai~~ 48 (182)
T 3kta_A 35 NGSGKSNIGDAILF 48 (182)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 59999999999864
No 461
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=70.91 E-value=1.7 Score=34.44 Aligned_cols=16 Identities=25% Similarity=-0.047 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
.|+||||++..+..+.
T Consensus 12 ~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 12 MYSGKTTELLSFVEIY 27 (184)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4999999997776643
No 462
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=70.91 E-value=1.6 Score=34.18 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.++
T Consensus 16 ~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 16 SQCGKTALLHVFAKD 30 (184)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998764
No 463
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=70.91 E-value=1.6 Score=37.79 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=13.8
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
+|+||||++..++...
T Consensus 113 ~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 113 NGTGKTTSCGKLAKMF 128 (306)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHH
Confidence 6999999999998843
No 464
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=70.78 E-value=1.7 Score=36.63 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=17.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||.+.+..- .. -..+.+++
T Consensus 50 NGsGKSTLlk~l~Gl--~~-p~~G~I~~ 74 (256)
T 1vpl_A 50 NGAGKTTTLRIISTL--IK-PSSGIVTV 74 (256)
T ss_dssp TTSSHHHHHHHHTTS--SC-CSEEEEEE
T ss_pred CCCCHHHHHHHHhcC--CC-CCceEEEE
Confidence 599999999999983 21 22356655
No 465
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=70.78 E-value=1.8 Score=33.06 Aligned_cols=14 Identities=50% Similarity=0.684 Sum_probs=12.4
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||...+.+
T Consensus 11 ~~~GKSsli~~l~~ 24 (169)
T 3q85_A 11 SGVGKSTLAGTFGG 24 (169)
T ss_dssp TTSSHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999865
No 466
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=70.75 E-value=1.7 Score=36.44 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=17.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||.+.+.. -..-. +.+++
T Consensus 35 NGsGKSTLlk~l~G--l~~p~--G~i~~ 58 (249)
T 2qi9_C 35 NGAGKSTLLARMAG--MTSGK--GSIQF 58 (249)
T ss_dssp TTSSHHHHHHHHTT--SSCCE--EEEEE
T ss_pred CCCcHHHHHHHHhC--CCCCC--eEEEE
Confidence 59999999999998 33332 55555
No 467
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=70.61 E-value=1.8 Score=34.33 Aligned_cols=15 Identities=13% Similarity=0.417 Sum_probs=12.8
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||.+.+.+.
T Consensus 29 ~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 29 RRSGKSSIQKVVFHK 43 (196)
T ss_dssp TTSSHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHhc
Confidence 699999999987763
No 468
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=70.59 E-value=1.7 Score=33.30 Aligned_cols=15 Identities=53% Similarity=0.851 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 15 ~~~GKssli~~l~~~ 29 (170)
T 1z08_A 15 GCVGKTSLVLRYCEN 29 (170)
T ss_dssp TTSCHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcC
Confidence 599999999998864
No 469
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=70.52 E-value=1.6 Score=33.16 Aligned_cols=15 Identities=40% Similarity=0.736 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 12 ~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 12 GGVGKSALTVQFVQG 26 (167)
T ss_dssp TTSSHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHcC
Confidence 599999999998764
No 470
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=70.52 E-value=1.7 Score=37.69 Aligned_cols=14 Identities=43% Similarity=0.480 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||++.+..
T Consensus 89 ~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 89 VAVGKSTTARVLQA 102 (308)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999987
No 471
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=70.51 E-value=1.7 Score=36.79 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=17.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||.+.+..- .. -..+.+++
T Consensus 42 nGsGKSTLl~~i~Gl--~~-p~~G~I~~ 66 (266)
T 2yz2_A 42 TGSGKSTLLQIVAGL--IE-PTSGDVLY 66 (266)
T ss_dssp TTSSHHHHHHHHTTS--SC-CSEEEEEE
T ss_pred CCCcHHHHHHHHhCC--CC-CCCcEEEE
Confidence 599999999999882 21 22356655
No 472
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=70.44 E-value=1.1 Score=36.87 Aligned_cols=14 Identities=50% Similarity=0.665 Sum_probs=8.2
Q ss_pred CCCcHHHHHHHHh-c
Q 043181 2 GGVGKTTLAQLLC-N 15 (348)
Q Consensus 2 gGiGKTtLa~~v~-~ 15 (348)
.|.|||||++.+. .
T Consensus 36 ~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 36 SGCGKTTVANKLLEK 50 (231)
T ss_dssp CC----CHHHHHHC-
T ss_pred CCCCHHHHHHHHHhc
Confidence 5999999999998 6
No 473
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=70.41 E-value=1.6 Score=34.34 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 57 ~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 57 QNSGKTSLLTLLTTD 71 (193)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998874
No 474
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=70.40 E-value=1.7 Score=36.63 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=18.0
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||.+.+.. -.. . .+.+++
T Consensus 55 nGsGKSTLl~~l~G--l~~-~-~G~I~i 78 (260)
T 2ghi_A 55 TGSGKSTIAKLLYR--FYD-A-EGDIKI 78 (260)
T ss_dssp TTSSHHHHHHHHTT--SSC-C-EEEEEE
T ss_pred CCCCHHHHHHHHhc--cCC-C-CeEEEE
Confidence 59999999999998 333 2 466665
No 475
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=70.38 E-value=5.8 Score=36.18 Aligned_cols=16 Identities=38% Similarity=0.354 Sum_probs=13.9
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
+|+||||+|..+....
T Consensus 109 ~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 109 QGAGKTTSVGKLGKFL 124 (433)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 7999999999998743
No 476
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=70.31 E-value=1.7 Score=36.88 Aligned_cols=25 Identities=32% Similarity=0.321 Sum_probs=17.7
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEE
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWV 29 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv 29 (348)
.|.|||||++.+..- .. -..+.+++
T Consensus 54 nGsGKSTLlk~l~Gl--~~-p~~G~I~~ 78 (271)
T 2ixe_A 54 NGSGKSTVAALLQNL--YQ-PTGGKVLL 78 (271)
T ss_dssp TTSSHHHHHHHHTTS--SC-CSEEEEEE
T ss_pred CCCCHHHHHHHHhcC--CC-CCCCEEEE
Confidence 599999999999983 22 22356655
No 477
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=70.20 E-value=1.8 Score=37.05 Aligned_cols=14 Identities=50% Similarity=0.717 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||.+.+..
T Consensus 56 NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 56 NGAGKTTLLNILNA 69 (279)
T ss_dssp TTSSHHHHHHHHTT
T ss_pred CCCcHHHHHHHHhC
Confidence 59999999999998
No 478
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=70.19 E-value=1.3 Score=41.25 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||++|+++++
T Consensus 247 pGtGKT~lAraia~ 260 (489)
T 3hu3_A 247 PGTGKTLIARAVAN 260 (489)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 69999999999988
No 479
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=70.13 E-value=1.7 Score=33.11 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=13.0
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||||..++.++
T Consensus 12 ~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 12 AAVGKSSIVLRFVSN 26 (170)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 599999999998764
No 480
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=70.06 E-value=1.9 Score=33.85 Aligned_cols=15 Identities=40% Similarity=0.592 Sum_probs=13.4
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||||..++.+.
T Consensus 32 ~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 32 SNVGKSSLLNALFNR 46 (195)
T ss_dssp TTSSHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHcC
Confidence 699999999999875
No 481
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=70.06 E-value=1.7 Score=33.03 Aligned_cols=14 Identities=36% Similarity=0.275 Sum_probs=12.5
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||..++.+
T Consensus 9 ~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 9 DAAGKTTILYKLKL 22 (164)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc
Confidence 59999999999876
No 482
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=69.93 E-value=1.7 Score=33.59 Aligned_cols=15 Identities=40% Similarity=0.713 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||||..++.+.
T Consensus 18 ~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 18 GGVGKSALTIQFIQS 32 (181)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 599999999998874
No 483
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=69.87 E-value=1.9 Score=34.01 Aligned_cols=14 Identities=29% Similarity=0.539 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+||||+|.++..
T Consensus 25 SGaGKStlal~L~~ 38 (181)
T 3tqf_A 25 ANIGKSELSLALID 38 (181)
T ss_dssp SSSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 79999999999876
No 484
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=69.75 E-value=2 Score=33.15 Aligned_cols=15 Identities=33% Similarity=0.603 Sum_probs=13.2
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 15 ~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 15 GASGKTSLTTCFAQE 29 (178)
T ss_dssp TTSSHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHhC
Confidence 599999999998864
No 485
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=69.70 E-value=1.9 Score=33.91 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=13.3
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||||..++.+.
T Consensus 32 ~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 32 SNVGKSSFINSLINR 46 (195)
T ss_dssp TTSSHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHhCC
Confidence 699999999999874
No 486
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=69.68 E-value=1.8 Score=34.13 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||...+.++
T Consensus 30 ~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 30 RGAGKSALTVKFLTK 44 (187)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCcHHHHHHHHHhC
Confidence 699999999988764
No 487
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=69.66 E-value=1.7 Score=34.15 Aligned_cols=14 Identities=36% Similarity=0.378 Sum_probs=12.0
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||.+.+.+
T Consensus 23 ~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 23 GLSGKTTNLKWIYS 36 (198)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999987765
No 488
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=69.59 E-value=1.8 Score=36.34 Aligned_cols=14 Identities=50% Similarity=0.748 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
.|.|||||.+.+..
T Consensus 40 nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 40 NGCGKSTLLDLLLG 53 (253)
T ss_dssp SSSSHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhC
Confidence 59999999999988
No 489
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=69.56 E-value=1.9 Score=33.21 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.+.
T Consensus 17 ~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 17 VDHGKTTLLDAIRHS 31 (178)
T ss_dssp TTTTHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhCC
Confidence 599999999999764
No 490
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=69.53 E-value=1.9 Score=33.25 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=13.7
Q ss_pred CCCcHHHHHHHHhcch
Q 043181 2 GGVGKTTLAQLLCNNV 17 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~ 17 (348)
.|+|||||..++.++.
T Consensus 18 ~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 18 SGVGKSSLLLRFADNT 33 (181)
T ss_dssp TTSCHHHHHHHHCSCC
T ss_pred CCCCHHHHHHHHhcCC
Confidence 5999999999998753
No 491
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=69.43 E-value=3.1 Score=38.27 Aligned_cols=44 Identities=25% Similarity=0.242 Sum_probs=28.8
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCC-CHHHHHHHHHH
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDF-DVFRITKTMLQ 46 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~-~~~~l~~~il~ 46 (348)
+|+|||||++.+..+...+. -+..+++.+++.. ...++.+++..
T Consensus 160 sGvGKTtL~~~l~~~~~~~~-~~i~V~~~iGerttev~el~~~l~~ 204 (473)
T 1sky_E 160 AGVGKTVLIQELIHNIAQEH-GGISVFAGVGERTREGNDLYHEMKD 204 (473)
T ss_dssp SSSCHHHHHHHHHHHHHHHT-CCCEEEEEESSCHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHhhhhhcc-CcEEEEeeeccCchHHHHHHHHhhh
Confidence 69999999999998543332 2455677777664 34455555543
No 492
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=69.41 E-value=1.8 Score=33.01 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||||..++.+.
T Consensus 15 ~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 15 TGVGKSSIMWRFVED 29 (170)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHcC
Confidence 599999999998764
No 493
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=69.37 E-value=3.6 Score=33.80 Aligned_cols=28 Identities=11% Similarity=-0.288 Sum_probs=18.2
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYL 31 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~ 31 (348)
.|.||||++..+.++ ...+-..++.+..
T Consensus 21 mGsGKTT~ll~~~~r--~~~~g~kVli~~~ 48 (223)
T 2b8t_A 21 MFAGKTAELIRRLHR--LEYADVKYLVFKP 48 (223)
T ss_dssp TTSCHHHHHHHHHHH--HHHTTCCEEEEEE
T ss_pred CCCcHHHHHHHHHHH--HHhcCCEEEEEEe
Confidence 499999999998884 3333223444443
No 494
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=69.34 E-value=1.8 Score=34.25 Aligned_cols=15 Identities=47% Similarity=0.654 Sum_probs=13.1
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.++
T Consensus 32 ~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 32 DNAGKTTLLHMLKND 46 (190)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999998863
No 495
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=69.34 E-value=1.7 Score=36.93 Aligned_cols=15 Identities=40% Similarity=0.689 Sum_probs=13.5
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
.|+|||||.+.++..
T Consensus 11 nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 11 SGLGKSTLVNTLFKS 25 (270)
T ss_dssp SSSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCC
Confidence 599999999999983
No 496
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=69.24 E-value=1.8 Score=34.05 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=12.6
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||...+.+.
T Consensus 29 ~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 29 LSSGKSALVHRYLTG 43 (184)
T ss_dssp TTSCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhcC
Confidence 699999999887653
No 497
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=69.22 E-value=5.4 Score=36.45 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=29.1
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcCCCCCHHHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLFEDFDVFRITKTMLQSIS 49 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~~~~~~~~l~~~il~~l~ 49 (348)
+|+||||||.++..+...... ..++|++.- .+...+...++....
T Consensus 209 pg~GKT~lal~ia~~~a~~~g-~~vl~~slE--~~~~~l~~R~~~~~~ 253 (444)
T 2q6t_A 209 PAMGKTAFALTIAQNAALKEG-VGVGIYSLE--MPAAQLTLRMMCSEA 253 (444)
T ss_dssp TTSCHHHHHHHHHHHHHHTTC-CCEEEEESS--SCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHhCC-CeEEEEECC--CCHHHHHHHHHHHHc
Confidence 699999999999885433211 246666553 455677777665543
No 498
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=69.13 E-value=1.8 Score=33.42 Aligned_cols=15 Identities=47% Similarity=0.722 Sum_probs=12.9
Q ss_pred CCCcHHHHHHHHhcc
Q 043181 2 GGVGKTTLAQLLCNN 16 (348)
Q Consensus 2 gGiGKTtLa~~v~~~ 16 (348)
+|+|||||..++.++
T Consensus 17 ~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 17 SGVGKTSLMHRYVND 31 (182)
T ss_dssp TTSSHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhC
Confidence 599999999998764
No 499
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=69.06 E-value=3.4 Score=35.34 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=19.6
Q ss_pred CCCcHHHHHHHHhcchhhhcCCCeeEEEEcC
Q 043181 2 GGVGKTTLAQLLCNNVKVKNRFHLETWVYLF 32 (348)
Q Consensus 2 gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~~ 32 (348)
||+||||+|..++. .....=..++.|+..
T Consensus 102 gG~GKTtva~nLA~--~lA~~G~rVLLID~D 130 (286)
T 3la6_A 102 PSIGMTFVCANLAA--VISQTNKRVLLIDCD 130 (286)
T ss_dssp SSSSHHHHHHHHHH--HHHTTTCCEEEEECC
T ss_pred CCCcHHHHHHHHHH--HHHhCCCCEEEEecc
Confidence 79999999999988 333321245566543
No 500
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=68.90 E-value=1.7 Score=34.51 Aligned_cols=14 Identities=50% Similarity=0.684 Sum_probs=12.3
Q ss_pred CCCcHHHHHHHHhc
Q 043181 2 GGVGKTTLAQLLCN 15 (348)
Q Consensus 2 gGiGKTtLa~~v~~ 15 (348)
+|+|||||...+.+
T Consensus 32 ~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 32 SGVGKSTLAGTFGG 45 (195)
T ss_dssp TTSSHHHHHHHTCC
T ss_pred CCCCHHHHHHHHHh
Confidence 69999999999864
Done!