BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 043183
         (564 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
           Identical Consensus Repeats
          Length = 126

 Score = 32.7 bits (73), Expect = 0.48,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 6   RLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEA 65
           R   + AA NG   V K + +   G    A  K G T L +AA   ++E +K L++    
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLE--AG 58

Query: 66  EDLAKPNKHGGTALSMLL---HLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGH 117
            D+   +K+G T L +     HLE   ++    +    +D N   P+ +AA  GH
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 113



 Score = 30.0 bits (66), Expect = 3.2,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 20/126 (15%)

Query: 40  GDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL---HLEGRVMMKHNRS 96
           G T L +AA   ++E +K L++     D+   +K+G T L +     HLE   ++    +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 97  IAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP 156
               +D N   P+ +AA  GH ++      + +LL   A    +D+         +  TP
Sbjct: 60  DVNAKDKNGRTPLHLAARNGHLEV------VKLLLEAGADVNAKDK---------NGRTP 104

Query: 157 LHALAR 162
           LH  AR
Sbjct: 105 LHLAAR 110


>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
           Plasticity Of The Interface
 pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
           Plasticity Of The Interface
          Length = 169

 Score = 31.2 bits (69), Expect = 1.6,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)

Query: 40  GDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL---HLEGRVMMKHNRS 96
           G T L +AA   ++E ++ L+K     D+   +  G T L +     HLE   ++  N +
Sbjct: 47  GWTPLHLAAYFGHLEIVEVLLK--NGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGA 104

Query: 97  IAMVRDHNQTLPIDVAASLGHKDM 120
                DHN   P+ +AA++GH ++
Sbjct: 105 DVNANDHNGFTPLHLAANIGHLEI 128


>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
           Identical Consensus Repeats
 pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
           Identical Consensus Repeats
          Length = 93

 Score = 29.3 bits (64), Expect = 6.0,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 40  GDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL---HLEGRVMMKHNRS 96
           G T L +AA   ++E +K L++     D+   +K+G T L +     HLE   ++    +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 97  IAMVRDHNQTLPIDVAASLGH 117
               +D N   P+ +AA  GH
Sbjct: 60  DVNAKDKNGRTPLHLAARNGH 80


>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
 pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
 pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
          Length = 154

 Score = 28.9 bits (63), Expect = 7.8,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 40  GDTALRIAAAGKYIEFLKELVKIMEAE--DLAKPNKHGGTALSM---LLHLEGRVMMKHN 94
           G   L  A AG+  E     V+I+ A   D    + +G T L M   + HLE   ++  N
Sbjct: 3   GKKLLEAARAGQDDE-----VRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRN 57

Query: 95  RSIAMVRDHNQTLPIDVAASLGHKDM 120
            +     D N T P+ +AASLGH ++
Sbjct: 58  GADVNAVDTNGTTPLHLAASLGHLEI 83


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.136    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,447,125
Number of Sequences: 62578
Number of extensions: 457621
Number of successful extensions: 1243
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 8
length of query: 564
length of database: 14,973,337
effective HSP length: 104
effective length of query: 460
effective length of database: 8,465,225
effective search space: 3894003500
effective search space used: 3894003500
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.4 bits)