Query 043183
Match_columns 564
No_of_seqs 670 out of 3897
Neff 8.8
Searched_HMMs 29240
Date Tue Mar 26 00:14:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043183.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043183hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyh_A HN1;, notch 1, ankyrin 100.0 9.8E-36 3.3E-40 292.4 16.1 218 2-285 7-242 (253)
2 4g8k_A 2-5A-dependent ribonucl 100.0 7.5E-35 2.6E-39 298.3 18.4 228 4-285 24-320 (337)
3 2xai_A ASB-9, ankyrin repeat a 100.0 2.8E-34 9.4E-39 283.4 20.6 237 3-322 1-247 (261)
4 1wdy_A 2-5A-dependent ribonucl 100.0 3.2E-34 1.1E-38 284.7 18.9 235 3-285 3-272 (285)
5 1n11_A Ankyrin; clathrin, BAND 100.0 4E-34 1.4E-38 303.4 20.5 275 2-323 77-387 (437)
6 3utm_A Tankyrase-1; tankyrase, 100.0 5.2E-34 1.8E-38 292.2 20.0 262 4-329 23-329 (351)
7 1k1a_A B-cell lymphoma 3-encod 100.0 3E-34 1E-38 278.5 16.4 218 2-285 6-235 (241)
8 3b7b_A Euchromatic histone-lys 100.0 9.7E-34 3.3E-38 274.5 19.4 211 2-279 8-223 (237)
9 1n11_A Ankyrin; clathrin, BAND 100.0 9.8E-34 3.4E-38 300.3 20.6 253 2-322 11-287 (437)
10 1oy3_D Transcription factor in 100.0 9.4E-34 3.2E-38 281.5 19.2 213 1-279 5-271 (282)
11 3aji_A 26S proteasome non-ATPa 100.0 5.3E-34 1.8E-38 275.3 16.4 216 3-285 4-224 (231)
12 2dzn_A Probable 26S proteasome 100.0 1.5E-33 5E-38 271.4 19.2 210 5-277 2-219 (228)
13 3d9h_A CDNA FLJ77766, highly s 100.0 3.1E-33 1.1E-37 279.7 15.9 237 3-321 13-263 (285)
14 4b93_B Ankyrin repeat domain-c 100.0 1.4E-33 4.7E-38 279.9 12.2 211 2-278 8-230 (269)
15 3d9h_A CDNA FLJ77766, highly s 100.0 1.2E-32 4.2E-37 275.4 18.9 212 2-285 56-272 (285)
16 3ljn_A Hypothetical protein; a 100.0 2.4E-33 8.3E-38 290.1 13.0 220 2-285 17-263 (364)
17 1s70_B 130 kDa myosin-binding 100.0 8.7E-33 3E-37 277.5 13.2 221 2-275 37-274 (299)
18 2fo1_E LIN-12 protein; beta-ba 100.0 8.2E-33 2.8E-37 287.5 12.5 218 3-285 123-365 (373)
19 3utm_A Tankyrase-1; tankyrase, 100.0 9.2E-31 3.1E-35 268.0 20.6 208 2-274 55-321 (351)
20 1oy3_D Transcription factor in 100.0 5.8E-32 2E-36 268.6 11.3 228 34-324 3-269 (282)
21 3eu9_A Huntingtin-interacting 100.0 6.8E-31 2.3E-35 254.1 18.3 217 2-285 6-229 (240)
22 2f8y_A Notch homolog 1, transl 100.0 1.2E-31 4E-36 257.4 12.0 204 16-285 2-210 (223)
23 3hra_A Ankyrin repeat family p 100.0 2.1E-30 7.1E-35 244.5 18.3 195 2-246 2-201 (201)
24 1wdy_A 2-5A-dependent ribonucl 100.0 6.1E-30 2.1E-34 253.8 21.5 206 2-250 36-280 (285)
25 2rfa_A Transient receptor pote 100.0 2.6E-30 8.8E-35 249.7 17.9 200 4-249 2-223 (232)
26 2fo1_E LIN-12 protein; beta-ba 100.0 9.9E-32 3.4E-36 279.4 7.8 249 2-323 91-356 (373)
27 3b7b_A Euchromatic histone-lys 100.0 4E-30 1.4E-34 249.1 17.0 209 35-322 6-219 (237)
28 1s70_B 130 kDa myosin-binding 100.0 1.6E-30 5.4E-35 261.0 13.5 261 11-324 4-276 (299)
29 2f8y_A Notch homolog 1, transl 100.0 2.4E-29 8.2E-34 241.2 20.2 191 2-249 22-217 (223)
30 1ikn_D Protein (I-kappa-B-alph 100.0 1.5E-31 5.2E-36 259.3 4.8 212 1-277 4-230 (236)
31 2xai_A ASB-9, ankyrin repeat a 100.0 5.2E-30 1.8E-34 252.8 15.8 201 39-321 2-207 (261)
32 3kea_A K1L; tropism, ANK repea 100.0 5.5E-30 1.9E-34 256.1 15.5 205 2-285 28-240 (285)
33 1k1a_A B-cell lymphoma 3-encod 100.0 9.1E-30 3.1E-34 246.9 16.2 212 34-322 3-225 (241)
34 2dzn_A Probable 26S proteasome 100.0 7.3E-30 2.5E-34 245.5 15.4 207 40-322 2-217 (228)
35 1yyh_A HN1;, notch 1, ankyrin 100.0 2.9E-29 1E-33 246.1 18.6 190 2-248 54-248 (253)
36 3aji_A 26S proteasome non-ATPa 100.0 2.1E-29 7.3E-34 242.9 15.0 189 2-248 37-230 (231)
37 3ljn_A Hypothetical protein; a 100.0 7E-30 2.4E-34 264.1 11.1 226 2-284 50-307 (364)
38 2rfa_A Transient receptor pote 100.0 4.4E-29 1.5E-33 241.0 15.2 184 39-285 2-216 (232)
39 4b93_B Ankyrin repeat domain-c 100.0 1.2E-29 4.3E-34 251.4 10.6 209 36-322 7-227 (269)
40 2etb_A Transient receptor pote 100.0 4.7E-29 1.6E-33 244.8 13.6 200 5-249 2-247 (256)
41 1sw6_A Regulatory protein SWI6 100.0 4E-29 1.4E-33 255.0 12.8 204 8-277 100-327 (327)
42 2pnn_A Transient receptor pote 100.0 4.9E-29 1.7E-33 247.2 13.0 203 2-248 10-258 (273)
43 1ikn_D Protein (I-kappa-B-alph 100.0 5.8E-30 2E-34 248.1 5.4 211 35-320 3-226 (236)
44 3hra_A Ankyrin repeat family p 100.0 2.2E-28 7.4E-33 230.6 14.4 186 37-285 2-197 (201)
45 3jxi_A Vanilloid receptor-rela 100.0 1.2E-28 4E-33 242.4 11.1 205 1-249 1-251 (260)
46 3kea_A K1L; tropism, ANK repea 100.0 2.4E-28 8.3E-33 244.2 12.9 200 13-285 7-214 (285)
47 4g8k_A 2-5A-dependent ribonucl 99.9 1.1E-27 3.9E-32 244.8 16.2 203 37-285 22-292 (337)
48 4gpm_A Engineered protein OR26 99.9 1.5E-27 5.3E-32 219.2 15.1 152 42-249 6-162 (169)
49 2etb_A Transient receptor pote 99.9 3.3E-28 1.1E-32 238.8 10.2 185 39-285 1-240 (256)
50 3eu9_A Huntingtin-interacting 99.9 9E-27 3.1E-31 225.0 19.3 191 2-249 39-236 (240)
51 4hbd_A KN motif and ankyrin re 99.9 2.6E-27 8.8E-32 235.6 12.5 189 4-246 75-273 (276)
52 2pnn_A Transient receptor pote 99.9 7.7E-28 2.6E-32 238.5 6.7 192 35-285 8-252 (273)
53 4gpm_A Engineered protein OR26 99.9 1.1E-25 3.6E-30 206.9 16.2 139 7-166 6-149 (169)
54 1sw6_A Regulatory protein SWI6 99.9 7.3E-27 2.5E-31 238.2 8.5 232 2-320 49-323 (327)
55 3jxi_A Vanilloid receptor-rela 99.9 9E-27 3.1E-31 228.9 7.7 193 37-285 2-244 (260)
56 4hbd_A KN motif and ankyrin re 99.9 1.2E-26 4E-31 230.8 5.6 185 38-285 74-269 (276)
57 2rfm_A Putative ankyrin repeat 99.9 2.1E-25 7.3E-30 208.9 12.8 157 34-246 29-190 (192)
58 3v30_A DNA-binding protein rfx 99.9 6.9E-25 2.4E-29 201.5 15.3 142 5-166 2-148 (172)
59 3v30_A DNA-binding protein rfx 99.9 5E-25 1.7E-29 202.5 12.4 158 40-252 2-164 (172)
60 1ihb_A P18-INK4C(INK6), cyclin 99.9 3.8E-25 1.3E-29 200.9 11.2 158 5-248 5-162 (162)
61 3v31_A Ankyrin repeat family A 99.9 7.1E-25 2.4E-29 200.4 12.1 160 4-249 2-161 (167)
62 3v31_A Ankyrin repeat family A 99.9 5.1E-24 1.8E-28 194.7 16.0 119 2-126 33-156 (167)
63 2vge_A RELA-associated inhibit 99.9 1.6E-26 5.6E-31 223.3 -1.1 196 21-284 1-206 (229)
64 2rfm_A Putative ankyrin repeat 99.9 3.8E-24 1.3E-28 200.3 15.0 144 2-166 32-180 (192)
65 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.7E-24 1.3E-28 196.3 14.0 153 38-246 12-169 (169)
66 2vge_A RELA-associated inhibit 99.9 6.2E-27 2.1E-31 226.3 -5.5 189 2-250 18-216 (229)
67 1ihb_A P18-INK4C(INK6), cyclin 99.9 4.6E-24 1.6E-28 193.7 13.3 119 2-126 35-158 (162)
68 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.5E-24 1.6E-28 192.6 12.3 154 5-245 2-155 (156)
69 1bd8_A P19INK4D CDK4/6 inhibit 99.9 9.4E-24 3.2E-28 190.5 13.8 117 2-126 33-154 (156)
70 1awc_B Protein (GA binding pro 99.9 1.6E-23 5.4E-28 188.7 14.6 140 5-166 2-146 (153)
71 2y1l_E Darpin-8.4; hydrolase-i 99.9 2.7E-23 9.1E-28 190.6 15.4 142 4-166 13-159 (169)
72 3twr_A Tankyrase-2; ankyrin re 99.9 3.2E-24 1.1E-28 195.6 9.1 117 3-124 6-127 (165)
73 1awc_B Protein (GA binding pro 99.9 1.9E-23 6.6E-28 188.1 13.7 146 40-242 2-152 (153)
74 3twr_A Tankyrase-2; ankyrin re 99.9 1.4E-23 4.7E-28 191.4 12.1 122 37-162 5-150 (165)
75 2aja_A Ankyrin repeat family p 99.9 9.1E-26 3.1E-30 233.5 -3.7 248 4-284 91-367 (376)
76 3f6q_A Integrin-linked protein 99.9 1.1E-23 3.8E-28 194.9 10.1 161 4-249 4-164 (179)
77 3f6q_A Integrin-linked protein 99.9 3.6E-23 1.2E-27 191.5 12.5 118 2-125 36-158 (179)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3E-23 1E-27 201.5 7.6 212 2-276 2-228 (239)
79 1ycs_B 53BP2, P53BP2; ankyrin 99.9 5.7E-24 2E-28 206.7 2.4 188 37-285 2-198 (239)
80 3t8k_A Uncharacterized protein 99.9 3.2E-22 1.1E-26 186.6 12.3 168 4-246 5-177 (186)
81 2aja_A Ankyrin repeat family p 99.9 3.2E-23 1.1E-27 214.4 -0.7 193 7-283 67-271 (376)
82 1bi7_B P16INK4A, MTS1, multipl 99.8 2.9E-21 1E-25 174.5 8.5 138 2-161 9-152 (156)
83 1d9s_A Cyclin-dependent kinase 99.8 1.2E-20 4E-25 166.4 10.5 118 2-126 9-132 (136)
84 2jab_A H10-2-G3; HER2, darpin, 99.8 2.2E-20 7.7E-25 164.5 11.6 118 3-126 12-134 (136)
85 3ui2_A Signal recognition part 99.8 8.9E-21 3E-25 184.8 8.6 138 37-248 42-185 (244)
86 1bi7_B P16INK4A, MTS1, multipl 99.8 6.7E-21 2.3E-25 172.1 7.0 85 36-124 8-97 (156)
87 3deo_A Signal recognition part 99.8 1.1E-20 3.7E-25 175.6 8.2 135 37-245 41-181 (183)
88 1d9s_A Cyclin-dependent kinase 99.8 1E-20 3.4E-25 166.8 7.6 129 35-248 7-136 (136)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.8 1.2E-19 4.2E-24 156.5 13.4 117 4-126 1-122 (126)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.8 1.7E-19 5.9E-24 155.6 12.4 126 39-248 1-126 (126)
91 3c5r_A BARD-1, BRCA1-associate 99.8 5.3E-20 1.8E-24 162.2 5.8 124 100-285 5-128 (137)
92 2b0o_E UPLC1; arfgap, structur 99.8 2.2E-19 7.6E-24 180.4 10.3 135 6-166 152-299 (301)
93 3c5r_A BARD-1, BRCA1-associate 99.8 9.5E-20 3.2E-24 160.6 5.5 117 2-124 7-128 (137)
94 2jab_A H10-2-G3; HER2, darpin, 99.8 6.3E-19 2.2E-23 155.2 10.8 112 36-166 10-126 (136)
95 2b0o_E UPLC1; arfgap, structur 99.8 3.6E-19 1.2E-23 178.9 10.3 138 73-279 149-299 (301)
96 3ui2_A Signal recognition part 99.8 5.3E-19 1.8E-23 172.2 10.3 124 4-166 44-173 (244)
97 3aaa_C Myotrophin, protein V-1 99.8 3.1E-19 1.1E-23 154.2 7.4 107 2-114 4-115 (123)
98 3deo_A Signal recognition part 99.8 2.4E-19 8.1E-24 166.5 6.5 115 4-125 43-163 (183)
99 3t8k_A Uncharacterized protein 99.8 4.1E-19 1.4E-23 165.5 7.9 118 3-126 36-175 (186)
100 3aaa_C Myotrophin, protein V-1 99.7 2.5E-18 8.7E-23 148.4 9.3 109 37-164 4-117 (123)
101 3ehr_A Osteoclast-stimulating 99.7 9.4E-19 3.2E-23 167.5 6.5 119 3-126 71-194 (222)
102 1dcq_A PYK2-associated protein 99.7 3.5E-18 1.2E-22 169.7 8.9 121 75-248 130-263 (278)
103 3ehr_A Osteoclast-stimulating 99.7 3.1E-18 1.1E-22 163.9 6.0 146 2-165 22-185 (222)
104 3jue_A Arfgap with coiled-coil 99.7 2.2E-17 7.4E-22 170.1 11.9 143 4-164 198-348 (368)
105 1dcq_A PYK2-associated protein 99.7 1.7E-17 5.8E-22 164.7 10.7 117 6-126 131-259 (278)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.7 4E-17 1.4E-21 133.5 8.5 93 104-248 1-93 (93)
107 3lvq_E ARF-GAP with SH3 domain 99.7 8.3E-17 2.8E-21 173.2 12.3 116 6-126 133-261 (497)
108 3lvq_E ARF-GAP with SH3 domain 99.7 7.9E-17 2.7E-21 173.4 11.0 130 77-276 134-277 (497)
109 3jue_A Arfgap with coiled-coil 99.7 1.4E-16 4.9E-21 163.9 11.2 144 38-234 197-348 (368)
110 1n0q_A 3ANK, 3 ankyrin repeats 99.7 3E-16 1E-20 128.2 10.4 79 4-87 1-79 (93)
111 2l6b_A NR1C; ankyrin, consensu 99.6 8.6E-16 2.9E-20 130.7 7.4 101 2-108 6-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.6 7.3E-16 2.5E-20 131.1 6.9 102 36-156 5-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.5 1.9E-14 6.4E-19 121.5 8.1 86 35-124 19-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.5 5.9E-14 2E-18 118.4 8.9 81 2-87 21-101 (110)
115 3tlw_A GLR4197 protein, GLIC; 31.0 2.3E+02 0.008 27.1 10.0 9 347-355 210-218 (321)
116 3gvo_A Pumilio 2, pumilio homo 28.0 1.5E+02 0.0051 28.9 8.1 76 8-83 40-117 (351)
117 1gp8_A Protein (scaffolding pr 20.8 63 0.0022 20.5 2.2 16 9-24 17-32 (40)
No 1
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=9.8e-36 Score=292.37 Aligned_cols=218 Identities=17% Similarity=0.139 Sum_probs=164.5
Q ss_pred CCCCCcHHHHHHHcC-------------CHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccc
Q 043183 2 TRSRRLQTYRAALNG-------------DWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDL 68 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G-------------~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l 68 (564)
|..|+||||.|+..| +.++++.|++.+++.. ...|..|.||||+|+..|+.++|++|++. +.++
T Consensus 7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~ 83 (253)
T 1yyh_A 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLH-NQTDRTGETALHLAARYSRSDAAKRLLEA--SADA 83 (253)
T ss_dssp ----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCT
T ss_pred CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcc-cccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCC
Confidence 567999999999988 8999999999987643 44688999999999999999999999998 6788
Q ss_pred cCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCC
Q 043183 69 AKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRP 143 (564)
Q Consensus 69 ~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~ 143 (564)
+.+|..|.||||+|+ ..| +.|++.++..++.+|..|.||||+|+..|+.+++++|++ .+.
T Consensus 84 ~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~ 148 (253)
T 1yyh_A 84 NIQDNMGRTPLHAAV-SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN--------------SHA 148 (253)
T ss_dssp TCCCTTSCCHHHHHH-HHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHH--------------TTC
T ss_pred CCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHH--------------cCC
Confidence 899999999999999 888 888888876778899999999999999999999999863 444
Q ss_pred ccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCC
Q 043183 144 KLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKP 223 (564)
Q Consensus 144 ~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G 223 (564)
+ ++.+|.+|+||||+|+..|+. ++++.|++ .+.+++.+|..|
T Consensus 149 ~-~~~~d~~g~t~L~~A~~~~~~--------------------------------~~v~~Ll~-----~ga~~~~~~~~g 190 (253)
T 1yyh_A 149 D-VNAVDDLGKSALHWAAAVNNV--------------------------------DAAVVLLK-----NGANKDMQNNRE 190 (253)
T ss_dssp C-TTCBCTTSCBHHHHHHHHTCH--------------------------------HHHHHHHH-----TTCCTTCCCTTS
T ss_pred C-CCCcCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHH-----cCCCCCCcCCCC
Confidence 4 478899999999999999964 56666655 356778889999
Q ss_pred chHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 224 GALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 224 ~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
.||||+|+..|+.+++++|+++|+++.... ..|+||||+|++.|+.+++++|
T Consensus 191 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d----------~~g~tpl~~A~~~g~~~i~~~l 242 (253)
T 1yyh_A 191 ETPLFLAAREGSYETAKVLLDHFANRDITD----------HMDRLPRDIAQERMHHDIVRLL 242 (253)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCCTTCCC----------TTCCCHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCCccccc----------cCCCCHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999874433 8999999999999999988876
No 2
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=7.5e-35 Score=298.25 Aligned_cols=228 Identities=15% Similarity=0.110 Sum_probs=186.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCc------------------
Q 043183 4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEA------------------ 65 (564)
Q Consensus 4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~------------------ 65 (564)
+|.||||.||+.|+.++|+.||+.+.+ ++...+..|.||||+||..|+.++|++|++++..
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 102 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA 102 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence 478999999999999999999999876 3344345699999999999999999999998532
Q ss_pred -------------ccccCCCCCCCcHHHHHHHhch-----HHHHhcCccc---------ccccCCCCCcHHHHHHHcCCC
Q 043183 66 -------------EDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSI---------AMVRDHNQTLPIDVAASLGHK 118 (564)
Q Consensus 66 -------------~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~---------~~~~d~~G~TpLh~Aa~~g~~ 118 (564)
.+++.+|..|.||||+|+ ..| +.+++.+.+. ....+..|.||||+|+..|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~-~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~ 181 (337)
T 4g8k_A 103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAA-VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 181 (337)
T ss_dssp TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHH-HTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCH
T ss_pred ccchhhHHhhhccchhhhhccCCCCHHHHHH-HcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCH
Confidence 246678889999999999 888 6777765432 234566799999999999999
Q ss_pred chHHHHHHc------------------------ccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCccccccc
Q 043183 119 DMPICMVSM------------------------NMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQN 174 (564)
Q Consensus 119 ~iv~~Ll~~------------------------~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~ 174 (564)
+++++|++. ..+..++++.|++.+.+. +.+|.+|+||||+|+..|+.
T Consensus 182 ~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~-------- 252 (337)
T 4g8k_A 182 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHL-------- 252 (337)
T ss_dssp HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCH--------
T ss_pred HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhh--------
Confidence 999999950 111234677788877665 78899999999999999864
Q ss_pred ccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccc
Q 043183 175 QRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYR 254 (564)
Q Consensus 175 ~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~ 254 (564)
++++.| +...+.+++.+|.+|+||||+|++.|+.++|++||++|+++
T Consensus 253 ------------------------~~v~~L----l~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~----- 299 (337)
T 4g8k_A 253 ------------------------GLVQRL----LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST----- 299 (337)
T ss_dssp ------------------------HHHHHH----HTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSS-----
T ss_pred ------------------------HHHHHH----HHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-----
Confidence 455554 44567788999999999999999999999999999999985
Q ss_pred cccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 255 RFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 255 r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
++.||||+|++.|+.+++++|
T Consensus 300 ----------n~~~~L~~A~~~~~~~iv~~L 320 (337)
T 4g8k_A 300 ----------DCGDLVMTARRNYDHSLVKVL 320 (337)
T ss_dssp ----------TTCCHHHHHHHTTCHHHHHHH
T ss_pred ----------CCCCHHHHHHHcCCHHHHHHH
Confidence 567899999999999988877
No 3
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=283.44 Aligned_cols=237 Identities=14% Similarity=0.123 Sum_probs=191.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183 3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML 82 (564)
Q Consensus 3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A 82 (564)
++|+||||.||..|+.++++.|++.+.+ + ...|.+|.||||+|+..|+.++|++|++. +.+++.+|..|.||||+|
T Consensus 1 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 76 (261)
T 2xai_A 1 MSDWSPMHEAAIHGHQLSLRNLISQGWA-V-NIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFNA 76 (261)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTTCC-S-SCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCC-C-CCcCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHH
Confidence 4799999999999999999999998765 3 44688999999999999999999999998 678899999999999999
Q ss_pred HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHH
Q 043183 83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPL 157 (564)
Q Consensus 83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpL 157 (564)
+ ..| +.|++.+.+.. .+.+|.||||+|+..|+.+++++|++ .+.+ ++.+|.+|+|||
T Consensus 77 ~-~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~L 138 (261)
T 2xai_A 77 C-VSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIA--------------YGGN-IDHKISHLGTPL 138 (261)
T ss_dssp H-HHTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCBTTTBCHH
T ss_pred H-HcCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHH--------------cCCC-CCcCCCCCCCHH
Confidence 9 998 88888876542 35569999999999999999999863 4444 478899999999
Q ss_pred HHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHH
Q 043183 158 HALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVG 237 (564)
Q Consensus 158 h~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~ 237 (564)
|+|+..|+. ++++.|++.. .+++. |..|.||||+|+..|+.+
T Consensus 139 ~~A~~~~~~--------------------------------~~v~~Ll~~g-----~~~~~-~~~g~t~Lh~A~~~~~~~ 180 (261)
T 2xai_A 139 YLACENQQR--------------------------------ACVKKLLESG-----ADVNQ-GKGQDSPLHAVARTASEE 180 (261)
T ss_dssp HHHHHTTCH--------------------------------HHHHHHHHHT-----CCTTC-CBTTBCHHHHHHHHTCHH
T ss_pred HHHHHhCCH--------------------------------HHHHHHHHcC-----CCCCC-CCCCCChHHHHHHcCCHH
Confidence 999999965 6777776643 34443 788999999999999999
Q ss_pred HHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhccc-----chHHhhccC
Q 043183 238 FLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQR-----GFAEAKNRE 312 (564)
Q Consensus 238 iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~-----~~~~~~n~~ 312 (564)
++++|+++|+++.... .+|+||||+|+..+ ++++++ ++...++ .....+|..
T Consensus 181 ~v~~Ll~~gad~~~~d----------~~g~tpl~~A~~~~--~~~~~l-----------l~~~~~~~l~~~~~~~~r~~~ 237 (261)
T 2xai_A 181 LACLLMDFGADTQAKN----------AEGKRPVELVPPES--PLAQLF-----------LEREGPPSLMQLCRLRIRKCF 237 (261)
T ss_dssp HHHHHHHTTCCTTCCC----------TTSCCGGGGSCTTC--THHHHH-----------HHC-CCCCHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCCcC----------CCCCChhhhccccc--cHHHHH-----------HhccCCccHHHHHHHHHHHHh
Confidence 9999999999984443 89999999999655 344443 1111122 234567889
Q ss_pred CCCchhhhHH
Q 043183 313 GLTPRALFTK 322 (564)
Q Consensus 313 g~t~~dl~~~ 322 (564)
|+|+.+...+
T Consensus 238 g~t~l~~~~~ 247 (261)
T 2xai_A 238 GIQQHHKITK 247 (261)
T ss_dssp CTTCGGGGGG
T ss_pred chhccccCcc
Confidence 9999887644
No 4
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-34 Score=284.73 Aligned_cols=235 Identities=12% Similarity=0.064 Sum_probs=200.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183 3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML 82 (564)
Q Consensus 3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A 82 (564)
.+|.||||.|++.|+.++++.|++.+++ ++...+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGGAN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHH
Confidence 4688999999999999999999999876 3344478899999999999999999999998 667888999999999999
Q ss_pred HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH-----------------------------cc
Q 043183 83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS-----------------------------MN 128 (564)
Q Consensus 83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~-----------------------------~~ 128 (564)
+ ..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++ +.
T Consensus 80 ~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 157 (285)
T 1wdy_A 80 A-IAGSVKLLKLFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157 (285)
T ss_dssp H-HHTCHHHHHHHHHTTCC-TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred H-HcCCHHHHHHHHHcCCC-CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence 9 998 888888755 57789999999999999999999999987 23
Q ss_pred cCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhh
Q 043183 129 MLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKV 208 (564)
Q Consensus 129 ~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~ 208 (564)
.++.++++.|++..+...+..|..|+||||+|+..++. ....++++.|++
T Consensus 158 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~----------------------------~~~~~i~~~Ll~-- 207 (285)
T 1wdy_A 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD----------------------------SDVEAITHLLLD-- 207 (285)
T ss_dssp HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT----------------------------TTHHHHHHHHHH--
T ss_pred cCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc----------------------------chHHHHHHHHHH--
Confidence 46788999999986666688999999999999998864 011256666554
Q ss_pred ccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHH-hCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 209 ALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTR-EYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 209 l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~-~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
.+.+++.+|..|.||||+|+..|+.+++++|++ .+.++.... .+|+||||+|++.++.+++++|
T Consensus 208 ---~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~----------~~g~t~l~~A~~~~~~~i~~~L 272 (285)
T 1wdy_A 208 ---HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD----------SDGKTALLLAVELKLKKIAELL 272 (285)
T ss_dssp ---TTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCC----------TTSCCHHHHHHHTTCHHHHHHH
T ss_pred ---cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccC----------CCCCcHHHHHHHcCcHHHHHHH
Confidence 455678889999999999999999999999999 677764333 8999999999999999888876
No 5
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4e-34 Score=303.36 Aligned_cols=275 Identities=17% Similarity=0.155 Sum_probs=208.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|..|.||||.|+..|+.++++.|++.+.+. ...+..|.||||+|+..|+.++|++|++. +.+.+..+..|.||||+
T Consensus 77 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~ 152 (437)
T 1n11_A 77 AKDDQTPLHCAARIGHTNMVKLLLENNANP--NLATTAGHTPLHIAAREGHVETVLALLEK--EASQACMTKKGFTPLHV 152 (437)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHHTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHhCCCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCcCCCCCCCCHHHH
Confidence 467899999999999999999999987653 34578899999999999999999999988 45667788899999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH-------------------cccCCHHHHHH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS-------------------MNMLLPDVALQ 137 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~-------------------~~~~~~~i~~~ 137 (564)
|+ ..| +.|++.+.+ ++..|..|.||||+|+..|+.+++++|++ +..++.++++.
T Consensus 153 A~-~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 230 (437)
T 1n11_A 153 AA-KYGKVRVAELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230 (437)
T ss_dssp HH-HTTCHHHHHHHHHTTCC-TTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred HH-HcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 99 888 778887654 57778889999999999999999999987 45677899999
Q ss_pred HHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhh------------cCCcHHHHHHhHHHHHHHHH
Q 043183 138 LCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNL------------GAEDVEVQRLQALKLVERLC 205 (564)
Q Consensus 138 Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~------------~~~h~~v~~~~~~~lv~~l~ 205 (564)
|++.+.+. +..|..|.||||+|+..|+.+ .++.+++. +..|.++.. ...++++.|+
T Consensus 231 Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~----------~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll 298 (437)
T 1n11_A 231 LLQYGGSA-NAESVQGVTPLHLAAQEGHAE----------MVALLLSKQANGNLGNKSGLTPLHLVAQE-GHVPVADVLI 298 (437)
T ss_dssp HHHTTCCT-TCCCTTCCCHHHHHHHTTCHH----------HHHHHHTTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHH
T ss_pred HHHcCCCC-CCCCCCCCCHHHHHHHCCCHH----------HHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHH
Confidence 99887765 778889999999999988652 22222211 112322221 2235555555
Q ss_pred HhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 206 GKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 206 ~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
+. +.+++.+|..|+||||+|+..|+.+++++|+++++++.... ..|+||||+|++.|+.+++++|
T Consensus 299 ~~-----g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~----------~~g~t~L~~A~~~g~~~iv~~L 363 (437)
T 1n11_A 299 KH-----GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT----------KLGYSPLHQAAQQGHTDIVTLL 363 (437)
T ss_dssp HH-----TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCC----------TTSCCHHHHHHHTTCHHHHHHH
T ss_pred hC-----CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCC----------CCCCCHHHHHHHCChHHHHHHH
Confidence 43 34566677788888888888888888888888887764333 7788888888888887777665
Q ss_pred cchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHHH
Q 043183 286 SGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTKE 323 (564)
Q Consensus 286 ~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~~ 323 (564)
++ .....+.+|.+|+||.++..+.
T Consensus 364 -----------l~---~ga~~~~~~~~g~t~l~~A~~~ 387 (437)
T 1n11_A 364 -----------LK---NGASPNEVSSDGTTPLAIAKRL 387 (437)
T ss_dssp -----------HH---TTCCSCCCCSSSCCHHHHHHHT
T ss_pred -----------HH---CcCCCCCCCCCCCCHHHHHHHc
Confidence 12 1223456788999999986553
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5.2e-34 Score=292.19 Aligned_cols=262 Identities=15% Similarity=0.091 Sum_probs=210.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183 4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL 83 (564)
Q Consensus 4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa 83 (564)
.+.|+||.||+.|+.+.++.++...+..+ ...|..|.||||+|+..|+.++|++|++. +.+++.+|..|.||||+|+
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 99 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPLNVNC-HASDGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNAC 99 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTTTTTC-CCSSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcHHHHHH
Confidence 46799999999999999999998755544 44688999999999999999999999998 6788899999999999999
Q ss_pred Hhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHc-------------------------------
Q 043183 84 HLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSM------------------------------- 127 (564)
Q Consensus 84 ~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~------------------------------- 127 (564)
..| +.|++.+.+ ++..|..|.||||+|+..|+.+++++|++.
T Consensus 100 -~~g~~~iv~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~ 177 (351)
T 3utm_A 100 -SYGHYEVTELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177 (351)
T ss_dssp -HTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred -HCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhh
Confidence 999 888888755 577899999999999999999999999872
Q ss_pred ---------ccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHH
Q 043183 128 ---------NMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQAL 198 (564)
Q Consensus 128 ---------~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~ 198 (564)
..+..+.+..++...... ...+..|.||||+|+..++. ...
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~-----------------------------~~~ 227 (351)
T 3utm_A 178 KGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHP-----------------------------KRK 227 (351)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCST-----------------------------THH
T ss_pred cccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCc-----------------------------cHH
Confidence 122334444444444322 45677899999999998643 123
Q ss_pred HHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCC
Q 043183 199 KLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPP 278 (564)
Q Consensus 199 ~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~ 278 (564)
++++.|++ .+.+++.+|..|+||||+|+..|+.+++++|+++++++.... ..|+||||+|+..|+
T Consensus 228 ~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d----------~~g~t~L~~A~~~~~ 292 (351)
T 3utm_A 228 QVAELLLR-----KGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD----------SLGQTALHRAALAGH 292 (351)
T ss_dssp HHHHHHHH-----TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------TTSCCHHHHHHHHTC
T ss_pred HHHHHHHH-----cCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC----------CCCCCHHHHHHHcCc
Confidence 56666654 456778889999999999999999999999999999884433 899999999999999
Q ss_pred CCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHHHhhhhHH
Q 043183 279 QDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTKEHKDLRE 329 (564)
Q Consensus 279 ~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~~~~~l~~ 329 (564)
.+++++| ++ .......+|.+|+||.++..+...++..
T Consensus 293 ~~~v~~L-----------l~---~gad~~~~~~~g~tal~~a~~~~~~~l~ 329 (351)
T 3utm_A 293 LQTCRLL-----------LS---YGSDPSIISLQGFTAAQMGNEAVQQILS 329 (351)
T ss_dssp HHHHHHH-----------HH---TTCCTTCCCTTSCCHHHHSCHHHHHHHH
T ss_pred HHHHHHH-----------HH---cCCCCCCcCCCCCChhhhhhHHHHHHHH
Confidence 8888876 11 2234566888999999987665544443
No 7
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3e-34 Score=278.50 Aligned_cols=218 Identities=13% Similarity=0.130 Sum_probs=185.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHh---CccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDV---YEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTA 78 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~---~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~Tp 78 (564)
|.+|+||||.||+.|+.++++.|++. .+..+ ...|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~ 82 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRHGQTA 82 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCH
Confidence 67899999999999999999999983 33333 44688999999999999999999999998 56788899999999
Q ss_pred HHHHHHhch-----HHHHhcCcc---cccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccC
Q 043183 79 LSMLLHLEG-----RVMMKHNRS---IAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRA 150 (564)
Q Consensus 79 LH~Aa~~~G-----~~Ll~~~~~---~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d 150 (564)
||+|+ ..| +.|++.++. ..+..|..|.||||+|+..|+.+++++|++ .+.+. +..|
T Consensus 83 l~~A~-~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--------------~g~~~-~~~~ 146 (241)
T 1k1a_A 83 AHLAC-EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLE--------------RGADI-DAVD 146 (241)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH--------------TTCCT-TCCC
T ss_pred HHHHH-HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHH--------------cCCCc-cccc
Confidence 99999 998 778887652 467788999999999999999999998853 55554 4555
Q ss_pred -CCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHH
Q 043183 151 -GDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFD 229 (564)
Q Consensus 151 -~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~ 229 (564)
..|.||||+|+..|+. ++++.|++ .+.+++.+|..|+||||+
T Consensus 147 ~~~g~t~L~~A~~~~~~--------------------------------~~v~~Ll~-----~g~~~~~~~~~g~t~L~~ 189 (241)
T 1k1a_A 147 IKSGRSPLIHAVENNSL--------------------------------SMVQLLLQ-----HGANVNAQMYSGSSALHS 189 (241)
T ss_dssp TTTCCCHHHHHHHTTCH--------------------------------HHHHHHHH-----TTCCTTCBCTTSCBHHHH
T ss_pred ccCCCcHHHHHHHcCCH--------------------------------HHHHHHHH-----cCCCCCCcCCCCCCHHHH
Confidence 8899999999999965 66776655 356788889999999999
Q ss_pred HHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 230 AAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 230 Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
|+..|+.+++++|+++|+++.... .+|+||||+|+..|+.++++.|
T Consensus 190 A~~~~~~~~v~~Ll~~ga~~~~~~----------~~g~tpl~~A~~~~~~~i~~~l 235 (241)
T 1k1a_A 190 ASGRGLLPLVRTLVRSGADSSLKN----------CHNDTPLMVARSRRVIDILRGK 235 (241)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCC----------TTSCCTTTTCSSHHHHHHHTC-
T ss_pred HHHcCCHHHHHHHHhcCCCCCCcC----------CCCCCHHHHHHhcCcHHHHhhh
Confidence 999999999999999999984433 8999999999999998888776
No 8
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=9.7e-34 Score=274.55 Aligned_cols=211 Identities=15% Similarity=0.171 Sum_probs=185.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|..|.||||.||..|+.++++.|++.+.+. ...+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 8 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 83 (237)
T 3b7b_A 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANI--DTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGSTCLHL 83 (237)
T ss_dssp SCCSCCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCCHHHH
T ss_pred cCCCCCHHHHHHHcCcHHHHHHHHHcCCCc--CccCCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCcHHHH
Confidence 457999999999999999999999987663 44688999999999999999999999988 66788899999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP 156 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp 156 (564)
|+ ..| +.|++.++..++..|..|.||||+|+..|+.+++++|++ .+.+ .+.+|.+|.||
T Consensus 84 A~-~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--------------~g~~-~~~~~~~g~t~ 147 (237)
T 3b7b_A 84 AA-KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLS--------------KGSD-INIRDNEENIC 147 (237)
T ss_dssp HH-HTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCCH
T ss_pred HH-HcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHH--------------CCCC-CCccCCCCCCH
Confidence 99 999 888888877788899999999999999999999998863 4444 47789999999
Q ss_pred HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183 157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV 236 (564)
Q Consensus 157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~ 236 (564)
||+|+..|+. ++++.|++ .+.+++.+|..|.||||+|+..|+.
T Consensus 148 L~~A~~~~~~--------------------------------~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~ 190 (237)
T 3b7b_A 148 LHWAAFSGCV--------------------------------DIAEILLA-----AKCDLHAVNIHGDSPLHIAARENRY 190 (237)
T ss_dssp HHHHHHHCCH--------------------------------HHHHHHHT-----TTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHCCCH--------------------------------HHHHHHHH-----cCCCCCCcCCCCCCHHHHHHHhCCH
Confidence 9999999965 56666654 3567788899999999999999999
Q ss_pred HHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCC
Q 043183 237 GFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQ 279 (564)
Q Consensus 237 ~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~ 279 (564)
+++++|+++++++.... .+|+||||+|+..++.
T Consensus 191 ~~v~~Ll~~gad~~~~d----------~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 191 DCVVLFLSRDSDVTLKN----------KEGETPLQCASLNSQV 223 (237)
T ss_dssp HHHHHHHTTTCCTTCCC----------TTSCCHHHHSCTTCHH
T ss_pred hHHHHHHHcCCCCCccC----------CCCCCHHHHHHHHHHH
Confidence 99999999999984443 8999999999999874
No 9
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=9.8e-34 Score=300.35 Aligned_cols=253 Identities=19% Similarity=0.159 Sum_probs=203.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
+.+|.||||.||..|+.++|+.|++.+.+. ...+..|.||||+|+..|+.++|++|++. +.+++.+|..|.||||+
T Consensus 11 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 86 (437)
T 1n11_A 11 GESGLTPLHVASFMGHLPIVKNLLQRGASP--NVSNVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHC 86 (437)
T ss_dssp ----CCHHHHHHHHTCHHHHHHHHHTTCCS--CCSSSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHH
Confidence 457999999999999999999999987653 34578899999999999999999999998 66788999999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH-------------------cccCCHHHHHH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS-------------------MNMLLPDVALQ 137 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~-------------------~~~~~~~i~~~ 137 (564)
|+ ..| +.|++.+.+ ++..|..|.||||+|+..|+.+++++|++ +..++.++++.
T Consensus 87 A~-~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~ 164 (437)
T 1n11_A 87 AA-RIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164 (437)
T ss_dssp HH-HHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HH-HCCCHHHHHHHHhCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHH
Confidence 99 999 888888755 57789999999999999999999999998 45678899999
Q ss_pred HHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHh
Q 043183 138 LCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEIS 217 (564)
Q Consensus 138 Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~ 217 (564)
|++++.+. +..|.+|.||||+|+..|+. ++++.|++ .+.+++
T Consensus 165 Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~--------------------------------~~v~~Ll~-----~g~~~~ 206 (437)
T 1n11_A 165 LLERDAHP-NAAGKNGLTPLHVAVHHNNL--------------------------------DIVKLLLP-----RGGSPH 206 (437)
T ss_dssp HHHTTCCT-TCCCSSCCCHHHHHHHTTCH--------------------------------HHHHHHGG-----GTCCSC
T ss_pred HHhCCCCC-CCCCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHh-----CCCCCC
Confidence 99987765 67888999999999999864 55665543 233456
Q ss_pred hhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHh
Q 043183 218 RLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFC 297 (564)
Q Consensus 218 ~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv 297 (564)
..+.+|.||||+|+..|+.+++++|++.++++.... ..|+||||+|+..|+.+++++|-
T Consensus 207 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~----------~~g~t~L~~A~~~g~~~~v~~Ll----------- 265 (437)
T 1n11_A 207 SPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAES----------VQGVTPLHLAAQEGHAEMVALLL----------- 265 (437)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------TTCCCHHHHHHHTTCHHHHHHHH-----------
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------CCCCCHHHHHHHCCCHHHHHHHH-----------
Confidence 667788889999999999999999888887764332 78889999999888877776651
Q ss_pred HhhcccchHHhhccCCCCchhhhHH
Q 043183 298 EKVVQRGFAEAKNREGLTPRALFTK 322 (564)
Q Consensus 298 ~~~~~~~~~~~~n~~g~t~~dl~~~ 322 (564)
+ .....+..|..|.||..+..+
T Consensus 266 ~---~~~~~~~~~~~g~t~L~~A~~ 287 (437)
T 1n11_A 266 S---KQANGNLGNKSGLTPLHLVAQ 287 (437)
T ss_dssp T---TTCCTTCCCTTCCCHHHHHHH
T ss_pred h---cCCCCCCCCCCCCCHHHHHHH
Confidence 1 112234566778888776543
No 10
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=9.4e-34 Score=281.55 Aligned_cols=213 Identities=14% Similarity=0.051 Sum_probs=167.4
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHhCcc--ccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcH
Q 043183 1 LTRSRRLQTYRAALNGDWAVAKSIYDVYEG--EIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTA 78 (564)
Q Consensus 1 l~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~--~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~Tp 78 (564)
.|.+|+||||.||+.|+.++++.|++.+.. .+ ...+..|.||||+|+..|+.++|++|++. +.+++.+|..|.||
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYL-DLQNDLGQTALHLAAILGEASTVEKLYAA--GAGVLVAERGGHTA 81 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTSCCH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCH
Confidence 367899999999999999999999988654 23 45688999999999999999999999998 67888999999999
Q ss_pred HHHHHHhch-----HHHHhcCcc----------------------------------------------cccccCCCCCc
Q 043183 79 LSMLLHLEG-----RVMMKHNRS----------------------------------------------IAMVRDHNQTL 107 (564)
Q Consensus 79 LH~Aa~~~G-----~~Ll~~~~~----------------------------------------------~~~~~d~~G~T 107 (564)
||+|+ ..| +.|++.++. .++.+|..|.|
T Consensus 82 L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 82 LHLAC-RVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHT-TTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHH-HcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 99999 988 777776533 24567889999
Q ss_pred HHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccC-CCCCcHHHHHHhCCCCCcccccccccchHHHHhhhc
Q 043183 108 PIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRA-GDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLG 186 (564)
Q Consensus 108 pLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~ 186 (564)
|||+|+..|+.+++++|+ +.+.+. +..+ ..|+||||+|+..|+.
T Consensus 161 ~L~~A~~~g~~~~v~~Ll--------------~~g~~~-~~~~~~~g~tpL~~A~~~~~~-------------------- 205 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLR--------------DAGADL-NKPEPTCGRTPLHLAVEAQAA-------------------- 205 (282)
T ss_dssp HHHHHHHTTCHHHHHHHH--------------HHTCCT-TCCCTTTCCCHHHHHHHTTCH--------------------
T ss_pred HHHHHHHcCCHHHHHHHH--------------HcCCCC-CCCCCCCCcCHHHHHHHcCCH--------------------
Confidence 999999999999999885 355555 4455 4699999999999964
Q ss_pred CCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcC
Q 043183 187 AEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTR 266 (564)
Q Consensus 187 ~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G 266 (564)
++++.|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|+++.... .+|
T Consensus 206 ------------~~v~~Ll~-----~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~----------~~g 258 (282)
T 1oy3_D 206 ------------SVLELLLK-----AGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDG----------GDK 258 (282)
T ss_dssp ------------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------------
T ss_pred ------------HHHHHHHH-----cCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCC----------Ccc
Confidence 66776655 356788899999999999999999999999999999985544 899
Q ss_pred CchHHHHHhcCCC
Q 043183 267 NNILHLAAMLPPQ 279 (564)
Q Consensus 267 ~TpLhlAa~~~~~ 279 (564)
+|||++|......
T Consensus 259 ~tpl~~a~~~~~~ 271 (282)
T 1oy3_D 259 LSPCSSSGSDSDS 271 (282)
T ss_dssp -------------
T ss_pred cccccccCCcccc
Confidence 9999999876653
No 11
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5.3e-34 Score=275.31 Aligned_cols=216 Identities=14% Similarity=0.103 Sum_probs=187.7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183 3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML 82 (564)
Q Consensus 3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A 82 (564)
..+.||||.|++.|+.+.++.+++.++... ...+.+|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 80 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERILADKSLA-TRTDQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIA 80 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHHHCGGGG-GCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHHhchhhh-hcCCCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCHHHHH
Confidence 458899999999999999999999987754 55689999999999999999999999998 567888999999999999
Q ss_pred HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHH
Q 043183 83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPL 157 (564)
Q Consensus 83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpL 157 (564)
+ ..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++ .+.+ .+.+|..|.|||
T Consensus 81 ~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--------------~g~~-~~~~~~~g~t~L 143 (231)
T 3aji_A 81 A-SAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLE--------------GGAN-PDAKDHYDATAM 143 (231)
T ss_dssp H-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHH
T ss_pred H-HcCHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-CCCcCCCCCcHH
Confidence 9 998 788888765 57789999999999999999999999863 4433 477899999999
Q ss_pred HHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHH
Q 043183 158 HALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVG 237 (564)
Q Consensus 158 h~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~ 237 (564)
|+|+..|+. ++++.|++ .+.+++.+|..|+||||+|+..|+.+
T Consensus 144 ~~A~~~~~~--------------------------------~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~ 186 (231)
T 3aji_A 144 HRAAAKGNL--------------------------------KMVHILLF-----YKASTNIQDTEGNTPLHLACDEERVE 186 (231)
T ss_dssp HHHHHHTCH--------------------------------HHHHHHHH-----TTCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHcCCH--------------------------------HHHHHHHh-----cCCCccccCCCCCCHHHHHHHCCCHH
Confidence 999999965 56666654 35567788999999999999999999
Q ss_pred HHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 238 FLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 238 iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
++++|+++|+++.... .+|+||||+|++.++.+++++|
T Consensus 187 ~v~~Ll~~ga~~~~~~----------~~g~t~l~~A~~~~~~~i~~lL 224 (231)
T 3aji_A 187 EAKFLVTQGASIYIEN----------KEEKTPLQVAKGGLGLILKRLA 224 (231)
T ss_dssp HHHHHHHTTCCSCCCC----------TTSCCHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCC----------CCCCCHHHHHHhhHHHHHHHHH
Confidence 9999999999984433 8999999999998887777665
No 12
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.5e-33 Score=271.44 Aligned_cols=210 Identities=14% Similarity=0.155 Sum_probs=179.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccC-CCCCCCcHHHHHH
Q 043183 5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAK-PNKHGGTALSMLL 83 (564)
Q Consensus 5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~-~d~~G~TpLH~Aa 83 (564)
|+||||.||+.|+.++++.|++.++... ...|..|.||||+|+..|+.+++++|++.+...+++. .|..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLL-LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCcccc-ccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 7899999999999999999999988754 4468999999999999999999999999965566666 8899999999999
Q ss_pred Hhch-----HHHHhcC-cccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHH
Q 043183 84 HLEG-----RVMMKHN-RSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPL 157 (564)
Q Consensus 84 ~~~G-----~~Ll~~~-~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpL 157 (564)
..| +.|++.+ +..++..|..|.||||+|+..|+.+++++|++ .+. ..+.+|.+|+|||
T Consensus 81 -~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--------------~g~-~~~~~~~~g~t~L 144 (228)
T 2dzn_A 81 -SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE--------------NGA-SVRIKDKFNQIPL 144 (228)
T ss_dssp -HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH--------------TTC-CSCCCCTTSCCHH
T ss_pred -HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHH--------------cCC-CccccCCCCCCHH
Confidence 888 7888876 23467789999999999999999999999863 443 4478899999999
Q ss_pred HHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHH
Q 043183 158 HALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVG 237 (564)
Q Consensus 158 h~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~ 237 (564)
|+|+..|+. ++++.|+ ...+.+++.+|..|+||||+|+..|+.+
T Consensus 145 ~~A~~~~~~--------------------------------~~v~~Ll----~~g~~~~~~~d~~g~t~L~~A~~~~~~~ 188 (228)
T 2dzn_A 145 HRAASVGSL--------------------------------KLIELLC----GLGKSAVNWQDKQGWTPLFHALAEGHGD 188 (228)
T ss_dssp HHHHHTTCH--------------------------------HHHHHHH----TTTCCCSCCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHcCCH--------------------------------HHHHHHH----hcCcccccCcCCCCCCHHHHHHHcCCHH
Confidence 999999965 5666654 3344678889999999999999999999
Q ss_pred HHHHHH-HhCCCcccccccccchHHHhhcCCchHHHHHhcC
Q 043183 238 FLLILT-REYPNLHISYRRFESSGAHLQTRNNILHLAAMLP 277 (564)
Q Consensus 238 iv~~LL-~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~ 277 (564)
++++|+ +.|+++.... .+|+||||+|++.+
T Consensus 189 ~v~~Ll~~~ga~~~~~~----------~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 189 AAVLLVEKYGAEYDLVD----------NKGAKAEDVALNEQ 219 (228)
T ss_dssp HHHHHHHHHCCCSCCBC----------TTSCBGGGGCSSTT
T ss_pred HHHHHHHhcCCCCCccC----------CCCCcHHHHHHHHH
Confidence 999999 8899885443 89999999997643
No 13
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.1e-33 Score=279.74 Aligned_cols=237 Identities=16% Similarity=0.131 Sum_probs=173.0
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCccc---------cccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCC
Q 043183 3 RSRRLQTYRAALNGDWAVAKSIYDVYEGE---------IGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNK 73 (564)
Q Consensus 3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~---------l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~ 73 (564)
..|.|+||.|+..|+.+.+..++...+.. .....|.+|.||||+||..|+.++|++|++. +.+++.+|.
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~~~ 90 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNIITA 90 (285)
T ss_dssp -----------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEECT
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCC
Confidence 46899999999999998888877664321 1133578999999999999999999999998 567888999
Q ss_pred CCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccc
Q 043183 74 HGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATL 148 (564)
Q Consensus 74 ~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~ 148 (564)
.|.||||+|+ ..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++ .+.+. +
T Consensus 91 ~g~t~L~~A~-~~g~~~~v~~Ll~~ga~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~~~-~- 152 (285)
T 3d9h_A 91 DHVSPLHEAC-LGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNACVSGSWDCVNLLLQ--------------HGASV-Q- 152 (285)
T ss_dssp TCCCHHHHHH-HTTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHH--------------TTCCS-S-
T ss_pred CCCCHHHHHH-HCCcHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCHHHHHHHHHH--------------CCCCC-C-
Confidence 9999999999 999 888888654 57889999999999999999999999864 44443 2
Q ss_pred cCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHH
Q 043183 149 RAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIF 228 (564)
Q Consensus 149 ~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh 228 (564)
.+.+|.||||+|+..|+. ++++.|++ .+.+++.+|..|.||||
T Consensus 153 ~~~~g~t~L~~A~~~g~~--------------------------------~~v~~Ll~-----~g~~~~~~d~~g~t~L~ 195 (285)
T 3d9h_A 153 PESDLASPIHEAARRGHV--------------------------------ECVNSLIA-----YGGNIDHKISHLGTPLY 195 (285)
T ss_dssp CSCTTSCHHHHHHHHTCH--------------------------------HHHHHHHH-----TTCCTTCCBTTTBCHHH
T ss_pred CCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHH-----CCCCCCCcCCCCCCHHH
Confidence 355699999999999965 56666654 34567888999999999
Q ss_pred HHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHh
Q 043183 229 DAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEA 308 (564)
Q Consensus 229 ~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~ 308 (564)
+|+..|+.+++++|++.++++.. . ..|+||||+|+..++.+++++| ++ .....+.
T Consensus 196 ~A~~~~~~~~v~~Ll~~ga~~~~-~----------~~g~t~L~~A~~~~~~~~v~~L-----------l~---~gad~~~ 250 (285)
T 3d9h_A 196 LACENQQRACVKKLLESGADVNQ-G----------KGQDSPLHAVVRTASEELACLL-----------MD---FGADTQA 250 (285)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTC-C----------BTTBCHHHHHHHTTCHHHHHHH-----------HH---TTCCTTC
T ss_pred HHHHcCcHHHHHHHHHCCCCCCC-C----------CCCCCHHHHHHHcCCHHHHHHH-----------HH---CCCCCCC
Confidence 99999999999999999988753 2 7899999999999998887766 11 2334567
Q ss_pred hccCCCCchhhhH
Q 043183 309 KNREGLTPRALFT 321 (564)
Q Consensus 309 ~n~~g~t~~dl~~ 321 (564)
+|.+|+||.++..
T Consensus 251 ~d~~g~t~l~~A~ 263 (285)
T 3d9h_A 251 KNAEGKRPVELVP 263 (285)
T ss_dssp CCTTSCCGGGGSC
T ss_pred cCCCCCCHHHHhc
Confidence 8899999999875
No 14
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=279.89 Aligned_cols=211 Identities=17% Similarity=0.199 Sum_probs=155.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCcccc------ccccCCCCChHHHHHHhcCCH-HHHHHHHHcCCcccccCCCCC
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEI------GIAIAKRGDTALRIAAAGKYI-EFLKELVKIMEAEDLAKPNKH 74 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l------~~~~~~~g~TpLh~Aa~~g~~-~iv~~Ll~~~~~~~l~~~d~~ 74 (564)
|+++.+||+.||+.|+.++|+.|++.+.... ....+..|.||||.|+..++. ++++.|++. +.+++.+|.+
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~d~~ 85 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVTSQD 85 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------C--CCCTTCCCTT
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCcCCC
Confidence 6778899999999999999999998765421 133467899999999998876 488999987 6788999999
Q ss_pred CCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCcccccc
Q 043183 75 GGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLR 149 (564)
Q Consensus 75 G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~ 149 (564)
|.||||+|+ ..| +.|++.+.+ ++.++.+|.||+|+|+..++.+++++|++ .+.+ ++.+
T Consensus 86 G~TpLh~A~-~~g~~~~v~~Ll~~~a~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~--------------~g~~-~n~~ 148 (269)
T 4b93_B 86 GSSPLHVAA-LHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLD--------------SNAK-PNKK 148 (269)
T ss_dssp SCCHHHHHH-HTTCTTHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHH--------------TTCC-SCCC
T ss_pred CCCHHHHHH-HcCcHHHHHHHHhcCCC-cCccCCCCCCccccccccChHHHHHHHHH--------------CCCC-CCCC
Confidence 999999999 999 888888765 57789999999999999999999998863 4444 4788
Q ss_pred CCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHH
Q 043183 150 AGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFD 229 (564)
Q Consensus 150 d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~ 229 (564)
|.+|+||||+|+..|+. ++++.|++ .+.+++.+|..|+||||+
T Consensus 149 d~~g~TpL~~A~~~g~~--------------------------------~~v~~Ll~-----~gadvn~~~~~g~t~Lh~ 191 (269)
T 4b93_B 149 DLSGNTPLIYACSGGHH--------------------------------ELVALLLQ-----HGASINASNNKGNTALHE 191 (269)
T ss_dssp CTTCCCHHHHHHHTTCG--------------------------------GGHHHHHH-----TTCCTTCBCTTSCBHHHH
T ss_pred CCCCCCHHHHHHHCCCH--------------------------------HHHHHHHH-----CCCCCCccccCCCcHHHH
Confidence 99999999999999976 56666654 456788999999999999
Q ss_pred HHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCC
Q 043183 230 AAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPP 278 (564)
Q Consensus 230 Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~ 278 (564)
|+..|+.++|++|+++|+++.... .+|+||||+|++.++
T Consensus 192 A~~~g~~~~v~~Ll~~Gad~~~~d----------~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 192 AVIEKHVFVVELLLLHGASVQVLN----------KRQRTAVDCAEQNSK 230 (269)
T ss_dssp HHHTTCHHHHHHHHHTTCCSCCCC----------TTSCCSGGGSCTTCH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCcC----------CCCCCHHHHHHhCCc
Confidence 999999999999999999984443 899999999987764
No 15
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-32 Score=275.41 Aligned_cols=212 Identities=14% Similarity=0.132 Sum_probs=179.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|.+|+||||.||..|+.++++.|++.+.+ + ...|.+|.||||+|+..|+.++|++|++. +.+++.+|..|.||||+
T Consensus 56 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~ 131 (285)
T 3d9h_A 56 AVSDWSPMHEAAIHGHQLSLRNLISQGWA-V-NIITADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFN 131 (285)
T ss_dssp SCCSCCHHHHHHHTTCHHHHHHHHHTTCC-S-CEECTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSSCCCTTCCCHHHH
T ss_pred CccCCCHHHHHHHcCCHHHHHHHHHCCCC-C-CCcCCCCCCHHHHHHHCCcHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence 56799999999999999999999998765 3 44688999999999999999999999998 67889999999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP 156 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp 156 (564)
|+ ..| +.|++.+.+. + .+..|.||||+|+..|+.+++++|++ .+.+ ++.+|.+|+||
T Consensus 132 A~-~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~--------------~g~~-~~~~d~~g~t~ 193 (285)
T 3d9h_A 132 AC-VSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIA--------------YGGN-IDHKISHLGTP 193 (285)
T ss_dssp HH-HHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCCBTTTBCH
T ss_pred HH-HcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHH--------------CCCC-CCCcCCCCCCH
Confidence 99 998 8888887654 2 24459999999999999999999863 4444 47889999999
Q ss_pred HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183 157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV 236 (564)
Q Consensus 157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~ 236 (564)
||+|+..|+. ++++.|++. +.+++ .|..|+||||+|+..|+.
T Consensus 194 L~~A~~~~~~--------------------------------~~v~~Ll~~-----ga~~~-~~~~g~t~L~~A~~~~~~ 235 (285)
T 3d9h_A 194 LYLACENQQR--------------------------------ACVKKLLES-----GADVN-QGKGQDSPLHAVVRTASE 235 (285)
T ss_dssp HHHHHHTTCH--------------------------------HHHHHHHHT-----TCCTT-CCBTTBCHHHHHHHTTCH
T ss_pred HHHHHHcCcH--------------------------------HHHHHHHHC-----CCCCC-CCCCCCCHHHHHHHcCCH
Confidence 9999999965 677777653 33444 388999999999999999
Q ss_pred HHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 237 GFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 237 ~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
+++++|+++++++.... .+|+||||+|+. +.+++++|
T Consensus 236 ~~v~~Ll~~gad~~~~d----------~~g~t~l~~A~~--~~~~~~~L 272 (285)
T 3d9h_A 236 ELACLLMDFGADTQAKN----------AEGKRPVELVPP--ESPLAQLF 272 (285)
T ss_dssp HHHHHHHHTTCCTTCCC----------TTSCCGGGGSCT--TSHHHHHH
T ss_pred HHHHHHHHCCCCCCCcC----------CCCCCHHHHhcC--ccHHHHHH
Confidence 99999999999884443 899999999993 44555554
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.4e-33 Score=290.14 Aligned_cols=220 Identities=13% Similarity=0.055 Sum_probs=185.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|..|.||||.||..|+.++|+.|++.+.+. ...|..|.||||+||..|+.++|++|++.+. +..+..|.||||+
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~--~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~----~~~~~~g~t~L~~ 90 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIETGVSP--TIQNRFGCTALHLACKFGCVDTAKYLASVGE----VHSLWHGQKPIHL 90 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCC----CCCCBTTBCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCc--cccCCCCCcHHHHHHHcCCHHHHHHHHHCCC----CccccCCCCHHHH
Confidence 457899999999999999999999987653 4468899999999999999999999999943 3334589999999
Q ss_pred HHHhch-----HHHHhc----Cccc----------------ccccCCCCCcHHHHHHHcC--CCchHHHHHHcccCCHHH
Q 043183 82 LLHLEG-----RVMMKH----NRSI----------------AMVRDHNQTLPIDVAASLG--HKDMPICMVSMNMLLPDV 134 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~----~~~~----------------~~~~d~~G~TpLh~Aa~~g--~~~iv~~Ll~~~~~~~~i 134 (564)
|+ ..| +.|++. +.+. .+..|..|.||||+|+..| +.+++++|++
T Consensus 91 A~-~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~-------- 161 (364)
T 3ljn_A 91 AV-MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQ-------- 161 (364)
T ss_dssp HH-HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHH--------
T ss_pred HH-HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHH--------
Confidence 99 999 777776 3221 1227888999999999999 8999998864
Q ss_pred HHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChh
Q 043183 135 ALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDS 214 (564)
Q Consensus 135 ~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~ 214 (564)
.+.+ ++.+|.+|+||||+|+..|+. ++++.|++...+....
T Consensus 162 ------~ga~-~~~~d~~g~t~L~~A~~~g~~--------------------------------~~v~~Ll~~g~~~~~~ 202 (364)
T 3ljn_A 162 ------LGAS-PTAKDKADETPLMRAMEFRNR--------------------------------EALDLMMDTVPSKSSL 202 (364)
T ss_dssp ------HTCC-TTCCCTTSCCHHHHHHHTTCH--------------------------------HHHHHHHHHCSCSSSC
T ss_pred ------cCCC-CcccCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHhcccccccc
Confidence 5444 478899999999999999965 6777787765544455
Q ss_pred hHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 215 EISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 215 ~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
+++.+|..|+||||+|+..|+.+++++|+++|+++.... .+|+||||+|+..|+.+++++|
T Consensus 203 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d----------~~g~tpL~~A~~~g~~~~v~~L 263 (364)
T 3ljn_A 203 RLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMED----------NEHTVPLYLSVRAAMVLLTKEL 263 (364)
T ss_dssp CTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCC----------TTSCCHHHHHHHTCCHHHHHHH
T ss_pred cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCC----------CCCCCHHHHHHHhChHHHHHHH
Confidence 588899999999999999999999999999999984433 8999999999999999998877
No 17
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.98 E-value=8.7e-33 Score=277.50 Aligned_cols=221 Identities=16% Similarity=0.109 Sum_probs=187.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
+++|.||||.||..|+.++++.|++.+.+ + ...|.+|.||||+||..|+.++|++|++. +.+++.+|..|.||||+
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~ 112 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGAD-I-NYANVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHA 112 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCC-T-TCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCC-C-cccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHH
Confidence 35678999999999999999999999866 3 44688999999999999999999999998 67889999999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCC------------HHHHHHHHHcCCc
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLL------------PDVALQLCRDRPK 144 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~------------~~i~~~Ll~~~~~ 144 (564)
|+ ..| +.|++.+.+ ++..|..|.||||+|+..++.+++++++...... ...+..++..+..
T Consensus 113 A~-~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (299)
T 1s70_B 113 AA-SCGYLDIAEYLISQGAH-VGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHI 190 (299)
T ss_dssp HH-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HH-HcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCc
Confidence 99 999 888888755 5778999999999999999999999988632222 2335566777766
Q ss_pred cccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCc
Q 043183 145 LATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPG 224 (564)
Q Consensus 145 ~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~ 224 (564)
.....+..|.||||+|+..|+. ++++.|++ .+.+++.+|..|.
T Consensus 191 ~~~~~~~~g~t~L~~A~~~g~~--------------------------------~~v~~Ll~-----~g~d~~~~d~~g~ 233 (299)
T 1s70_B 191 NDVRHAKSGGTALHVAAAKGYT--------------------------------EVLKLLIQ-----ARYDVNIKDYDGW 233 (299)
T ss_dssp CCCCCTTTCCCHHHHHHHHTCH--------------------------------HHHHHHHT-----TTCCTTCCCTTCC
T ss_pred chhhhcCCCCCHHHHHHHCCcH--------------------------------HHHHHHHH-----cCCCCCCcCCCCC
Confidence 6677888999999999999965 56666643 4567888999999
Q ss_pred hHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHh
Q 043183 225 ALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAM 275 (564)
Q Consensus 225 TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~ 275 (564)
||||+|+..|+.+++++|+++|+++.... ..|+||||+|++
T Consensus 234 tpL~~A~~~~~~~~v~~Ll~~gad~~~~d----------~~g~t~l~~A~~ 274 (299)
T 1s70_B 234 TPLHAAAHWGKEEACRILVENLCDMEAVN----------KVGQTAFDVADE 274 (299)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------TTSCCTTTSCCS
T ss_pred cHHHHHHhcCCHHHHHHHHHcCCCCCCcC----------CCCCCHHHHHHH
Confidence 99999999999999999999999984433 899999999965
No 18
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.98 E-value=8.2e-33 Score=287.51 Aligned_cols=218 Identities=17% Similarity=0.131 Sum_probs=182.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHH--------HhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCC
Q 043183 3 RSRRLQTYRAALNGDWAVAKSIY--------DVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKH 74 (564)
Q Consensus 3 ~~g~t~Lh~Aa~~G~~~~v~~Ll--------~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~ 74 (564)
..|+||||.||..|+.++++.|+ +.+.+ + ...|.+|.||||+|+..|+.++|++|++. +.+++.+|..
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-v-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~--ga~~~~~~~~ 198 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-V-NAMDCDENTPLMLAVLARRRRLVAYLMKA--GADPTIYNKS 198 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTT
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-C-cCCCCCCCCHHHHHHHcChHHHHHHHHHC--CCCCcccCCC
Confidence 57999999999999998888877 44443 3 44688999999999999999999999998 6778889999
Q ss_pred CCcHHHHHHHhch-----HHHHhcCc--ccccccCCCCCcHHHHHHHcC---CCchHHHHHHcccCCHHHHHHHHHcCCc
Q 043183 75 GGTALSMLLHLEG-----RVMMKHNR--SIAMVRDHNQTLPIDVAASLG---HKDMPICMVSMNMLLPDVALQLCRDRPK 144 (564)
Q Consensus 75 G~TpLH~Aa~~~G-----~~Ll~~~~--~~~~~~d~~G~TpLh~Aa~~g---~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~ 144 (564)
|.||||+|+ ..| +.|++.+. ..++..|..|.||||+|+..+ +.+++++|++ .+.+
T Consensus 199 g~t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~--------------~g~~ 263 (373)
T 2fo1_E 199 ERSALHQAA-ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVE--------------KGAK 263 (373)
T ss_dssp CCCHHHHHH-HTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHH--------------HTCC
T ss_pred CCCHHHHHH-HCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHH--------------CCCC
Confidence 999999999 998 77777653 356778999999999999988 6777787754 4444
Q ss_pred cc-------cccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHh
Q 043183 145 LA-------TLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEIS 217 (564)
Q Consensus 145 ~~-------~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~ 217 (564)
.. ...|.+|.||||+|+..|+. ++++.|++ ..+.+++
T Consensus 264 ~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~--------------------------------~~v~~Ll~----~~~~~~n 307 (373)
T 2fo1_E 264 VDYDGAARKDSEKYKGRTALHYAAQVSNM--------------------------------PIVKYLVG----EKGSNKD 307 (373)
T ss_dssp SSCCSGGGTSSSSCCCCCTHHHHHSSCCH--------------------------------HHHHHHHH----HSCCCTT
T ss_pred cccccccccCcccccCCCHHHHHHHhCCH--------------------------------HHHHHHHH----hcCCCcc
Confidence 32 24678999999999999965 56666654 3456788
Q ss_pred hhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 218 RLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 218 ~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
.+|..|+||||+|+..|+.+++++|+++|+++.... .+|+||||+|+..|+.+++++|
T Consensus 308 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d----------~~g~t~l~~A~~~g~~~iv~~L 365 (373)
T 2fo1_E 308 KQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD----------ATDHTARQLAQANNHHNIVDIF 365 (373)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC----------SSSCCHHHHHHHTTCHHHHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCC----------CCCCCHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999999984433 8999999999999999988876
No 19
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=9.2e-31 Score=268.01 Aligned_cols=208 Identities=16% Similarity=0.089 Sum_probs=169.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|..|.||||.||..|+.++++.|++.+.+. ...|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+
T Consensus 55 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~ 130 (351)
T 3utm_A 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADV--HAKDKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFTPLHE 130 (351)
T ss_dssp STTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence 467999999999999999999999987663 44688999999999999999999999998 67788899999999999
Q ss_pred HHHhch-----HHHHhcCcccccccC------------------------------------------------------
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRD------------------------------------------------------ 102 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d------------------------------------------------------ 102 (564)
|+ ..| +.|++.+.+ ++..|
T Consensus 131 A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 208 (351)
T 3utm_A 131 AA-SKNRVEVCSLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQP 208 (351)
T ss_dssp HH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCT
T ss_pred HH-HcCCHHHHHHHHHcCCC-CccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCC
Confidence 99 999 788887654 23333
Q ss_pred CCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHH
Q 043183 103 HNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRC 182 (564)
Q Consensus 103 ~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~ 182 (564)
..|.||||+|+..++. +..++++.|++.+.+. +.+|.+|+||||+|+..|+.
T Consensus 209 ~~~~t~L~~A~~~~~~-----------~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~---------------- 260 (351)
T 3utm_A 209 QSHETALHCAVASLHP-----------KRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHN---------------- 260 (351)
T ss_dssp TTCCCHHHHHHHCCST-----------THHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCH----------------
T ss_pred CCCCCHHHHHHHHhCc-----------cHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCH----------------
Confidence 4456666666666432 1233344445566554 78899999999999999965
Q ss_pred hhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHH
Q 043183 183 FNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAH 262 (564)
Q Consensus 183 ~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~ 262 (564)
++++.|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|+++....
T Consensus 261 ----------------~~v~~Ll~-----~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~--------- 310 (351)
T 3utm_A 261 ----------------DVMEVLHK-----HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS--------- 310 (351)
T ss_dssp ----------------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC---------
T ss_pred ----------------HHHHHHHH-----CCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcC---------
Confidence 66776655 456788899999999999999999999999999999984433
Q ss_pred hhcCCchHHHHH
Q 043183 263 LQTRNNILHLAA 274 (564)
Q Consensus 263 ~~~G~TpLhlAa 274 (564)
.+|+||+|+|.
T Consensus 311 -~~g~tal~~a~ 321 (351)
T 3utm_A 311 -LQGFTAAQMGN 321 (351)
T ss_dssp -TTSCCHHHHSC
T ss_pred -CCCCChhhhhh
Confidence 89999999983
No 20
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.97 E-value=5.8e-32 Score=268.61 Aligned_cols=228 Identities=15% Similarity=0.121 Sum_probs=166.1
Q ss_pred cccCCCCChHHHHHHhcCCHHHHHHHHHcCCcc-cccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCc
Q 043183 34 IAIAKRGDTALRIAAAGKYIEFLKELVKIMEAE-DLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTL 107 (564)
Q Consensus 34 ~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~-~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~T 107 (564)
...|.+|.||||+||..|+.++|++|++.+... .++.+|..|.||||+|+ ..| +.|++.+.+ ++.+|..|.|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~ga~-~~~~~~~g~t 80 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA-ILGEASTVEKLYAAGAG-VLVAERGGHT 80 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCC-SSCCCTTSCC
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-CCCCCCCCCC
Confidence 346889999999999999999999999984332 28889999999999999 999 888888765 5788999999
Q ss_pred HHHHHHHcCCCchHHHHHHcccCC--------------------------------HHHHHHHHHcCCccccccCCCCCc
Q 043183 108 PIDVAASLGHKDMPICMVSMNMLL--------------------------------PDVALQLCRDRPKLATLRAGDCET 155 (564)
Q Consensus 108 pLh~Aa~~g~~~iv~~Ll~~~~~~--------------------------------~~i~~~Ll~~~~~~~~~~d~~G~T 155 (564)
|||+|+..|+.+++++|++..... ......++.......+.+|..|.|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 999999999999999998621110 000000111111234678999999
Q ss_pred HHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhc-CCchHHHHHHHcC
Q 043183 156 PLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLIS-KPGALIFDAAKQG 234 (564)
Q Consensus 156 pLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~-~G~TpLh~Aa~~g 234 (564)
|||+|+..|+. ++++.|++. +.+++.++. .|+||||+|+..|
T Consensus 161 ~L~~A~~~g~~--------------------------------~~v~~Ll~~-----g~~~~~~~~~~g~tpL~~A~~~~ 203 (282)
T 1oy3_D 161 PLHVAVIHKDA--------------------------------EMVRLLRDA-----GADLNKPEPTCGRTPLHLAVEAQ 203 (282)
T ss_dssp HHHHHHHTTCH--------------------------------HHHHHHHHH-----TCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHHHHHHcCCH--------------------------------HHHHHHHHc-----CCCCCCCCCCCCcCHHHHHHHcC
Confidence 99999999965 677777653 345666664 4999999999999
Q ss_pred CHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCC
Q 043183 235 NVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGL 314 (564)
Q Consensus 235 ~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~ 314 (564)
+.+++++|+++|+++.... ..|+||||+|++.|+.+++++| ++ .......+|.+|+
T Consensus 204 ~~~~v~~Ll~~gad~~~~d----------~~g~tpL~~A~~~~~~~~v~~L-----------l~---~ga~~~~~~~~g~ 259 (282)
T 1oy3_D 204 AASVLELLLKAGADPTARM----------YGGRTPLGSALLRPNPILARLL-----------RA---HGAPEPEDGGDKL 259 (282)
T ss_dssp CHHHHHHHHHTTCCTTCCC----------TTSCCHHHHHHTSSCHHHHHHH-----------HH---TTCCCCCCC----
T ss_pred CHHHHHHHHHcCCCCcccc----------cCCCCHHHHHHHcCCcHHHHHH-----------HH---cCCCcCcCCCccc
Confidence 9999999999999984433 8999999999999998888876 11 2233556888999
Q ss_pred CchhhhHHHh
Q 043183 315 TPRALFTKEH 324 (564)
Q Consensus 315 t~~dl~~~~~ 324 (564)
||.+......
T Consensus 260 tpl~~a~~~~ 269 (282)
T 1oy3_D 260 SPCSSSGSDS 269 (282)
T ss_dssp ----------
T ss_pred ccccccCCcc
Confidence 9999875543
No 21
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=6.8e-31 Score=254.05 Aligned_cols=217 Identities=16% Similarity=0.102 Sum_probs=180.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCccccc-CCCCCCCcHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLA-KPNKHGGTALS 80 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~-~~d~~G~TpLH 80 (564)
|..|.||||.|++.|+.++++.|++.+.+. ...+..|.||||+|+..|+.+++++|++.+ .+++ ..+..|.||||
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVEAGYDV--RQPDKENVTLLHWAAINNRIDLVKYYISKG--AIVDQLGGDLNSTPLH 81 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCBTTTTBCHHH
T ss_pred ccccchHHHHHHHcCChHHHHHHHHcCCCc--CCCCCCCCCHHHHHHHhCCHHHHHHHHHcC--CcchhhcCCcCCChhH
Confidence 567899999999999999999999987653 446889999999999999999999999984 3433 44556999999
Q ss_pred HHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCc
Q 043183 81 MLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCET 155 (564)
Q Consensus 81 ~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~T 155 (564)
+|+ ..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++ .+.+ .+.+|.+|.|
T Consensus 82 ~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~--------------~~~~-~~~~~~~g~t 144 (240)
T 3eu9_A 82 WAT-RQGHLSMVVQLMKYGAD-PSLIDGEGCSCIHLAAQFGHTSIVAYLIA--------------KGQD-VDMMDQNGMT 144 (240)
T ss_dssp HHH-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCC
T ss_pred HHH-HcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCHHHHHHHHHh--------------cCCC-ccccCCCCCc
Confidence 999 888 788887654 57788999999999999999999999863 4443 4788999999
Q ss_pred HHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhc-CCchHHHHHHHcC
Q 043183 156 PLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLIS-KPGALIFDAAKQG 234 (564)
Q Consensus 156 pLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~-~G~TpLh~Aa~~g 234 (564)
|||+|+..++.. ++++.+.+ .+.+++..+. .|.||||+|+..|
T Consensus 145 ~l~~a~~~~~~~-------------------------------~~~~~L~~-----~~~~~~~~~~~~g~t~L~~A~~~~ 188 (240)
T 3eu9_A 145 PLMWAAYRTHSV-------------------------------DPTRLLLT-----FNVSVNLGDKYHKNTALHWAVLAG 188 (240)
T ss_dssp HHHHHHHHCCSS-------------------------------TTHHHHHH-----TTCCTTCCCTTTCCCHHHHHHHHT
T ss_pred HHHHHHHhCChH-------------------------------HHHHHHHh-----cCCCcchhhccCCCcHHHHHHHcC
Confidence 999999777530 34444433 3445666666 8999999999999
Q ss_pred CHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 235 NVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 235 ~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
+.+++++|+++++++.... .+|+||||+|++.|+.+++++|
T Consensus 189 ~~~~v~~Ll~~g~~~~~~~----------~~g~t~l~~A~~~~~~~~v~~L 229 (240)
T 3eu9_A 189 NTTVISLLLEAGANVDAQN----------IKGESALDLAKQRKNVWMINHL 229 (240)
T ss_dssp CHHHHHHHHHHTCCTTCBC----------TTSCBHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHcCCCCCCcC----------CCCCCHHHHHHHcCcHHHHHHH
Confidence 9999999999999884433 8999999999999999888876
No 22
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=1.2e-31 Score=257.40 Aligned_cols=204 Identities=18% Similarity=0.152 Sum_probs=154.3
Q ss_pred CCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHH
Q 043183 16 GDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVM 90 (564)
Q Consensus 16 G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~L 90 (564)
|+.++++.|++.+++. ....|.+|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+ ..| +.|
T Consensus 2 g~~~~i~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~~v~~L 77 (223)
T 2f8y_A 2 DAPAVISDFIYQGASL-HNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAV-SADAQGVFQIL 77 (223)
T ss_dssp ---CCEETTEETTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-HTTCHHHHHHH
T ss_pred CcHHHHHHHHHcCCCc-ccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH-HcCCHHHHHHH
Confidence 5677777888776653 344577888888888888888888888887 5567778888888888888 887 777
Q ss_pred HhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCccc
Q 043183 91 MKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNF 170 (564)
Q Consensus 91 l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f 170 (564)
++.++..++..|..|.||||+|+..|+.+++++|++ .+.+ ++..|.+|+||||+|+..|+.
T Consensus 78 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~~~---- 138 (223)
T 2f8y_A 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN--------------SHAD-VNAVDDLGKSALHWAAAVNNV---- 138 (223)
T ss_dssp HHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCBCTTSCBHHHHHHHTTCH----
T ss_pred HHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHH--------------cCCC-CcCcCCCCCcHHHHHHHcCCH----
Confidence 777776677778888888888888888888887753 3333 367788888888888888854
Q ss_pred ccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcc
Q 043183 171 INQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLH 250 (564)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~ 250 (564)
++++.|++ .+.+++.+|..|.||||+|+..|+.+++++|+++++++.
T Consensus 139 ----------------------------~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~ 185 (223)
T 2f8y_A 139 ----------------------------DAAVVLLK-----NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD 185 (223)
T ss_dssp ----------------------------HHHHHHHH-----TTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred ----------------------------HHHHHHHH-----cCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence 56666554 245667778888888888888888888888888888764
Q ss_pred cccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 251 ISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 251 ~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
... ..|+||||+|++.++.+++++|
T Consensus 186 ~~~----------~~g~t~l~~A~~~~~~~i~~~L 210 (223)
T 2f8y_A 186 ITD----------HMDRLPRDIAQERMHHDIVRLL 210 (223)
T ss_dssp CCC----------TTCCCHHHHHHHTTCHHHHHHH
T ss_pred ccc----------ccCCCHHHHHHHhcchHHHHHH
Confidence 333 7788888888888887777765
No 23
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=2.1e-30 Score=244.47 Aligned_cols=195 Identities=18% Similarity=0.087 Sum_probs=167.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
+..+.||||.||..|+.+.++.+++.++..+ ...|.+|.||||+|+..|+.++|++|++. +.+++.+|..|.||||+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~ 78 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQV-DEVDTEGNTPLNIAVHNNDIEIAKALIDR--GADINLQNSISDSPYLY 78 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHH
Confidence 4568999999999999999999999887555 44688999999999999999999999998 67888999999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP 156 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp 156 (564)
|+ ..| +.|++..+..++..|..|.||||+|+..|+.+++++|+ +.++...+.+|..|+||
T Consensus 79 A~-~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll--------------~~g~~~~~~~~~~g~t~ 143 (201)
T 3hra_A 79 AG-AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL--------------EDGREDIDFQNDFGYTA 143 (201)
T ss_dssp HH-HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHH--------------HHCCCCTTCCCTTSCCH
T ss_pred HH-HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHH--------------HcCCCCcCCCCCCCCCH
Confidence 99 999 78887777677889999999999999999999999885 46656668899999999
Q ss_pred HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183 157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV 236 (564)
Q Consensus 157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~ 236 (564)
||+|+..++.. ....++++.|++ .+.+++.+|..|.||||+|+..|+.
T Consensus 144 L~~A~~~~~~~---------------------------~~~~~~v~~Ll~-----~ga~~~~~~~~g~t~l~~A~~~~~~ 191 (201)
T 3hra_A 144 LIEAVGLREGN---------------------------QLYQDIVKLLME-----NGADQSIKDNSGRTAMDYANQKGYT 191 (201)
T ss_dssp HHHHHHSSCCS---------------------------HHHHHHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HHHHHHhccch---------------------------hhHHHHHHHHHH-----CCCCCCccCCCCCCHHHHHHHcCCH
Confidence 99999988630 011356666654 3567788999999999999999999
Q ss_pred HHHHHHHHhC
Q 043183 237 GFLLILTREY 246 (564)
Q Consensus 237 ~iv~~LL~~~ 246 (564)
+++++|+++|
T Consensus 192 ~~~~~Ll~~G 201 (201)
T 3hra_A 192 EISKILAQYN 201 (201)
T ss_dssp HHHHHHHTCC
T ss_pred hHHHHHHhcC
Confidence 9999999865
No 24
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=6.1e-30 Score=253.80 Aligned_cols=206 Identities=17% Similarity=0.129 Sum_probs=177.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
+..|.||||.|+..|+.++++.|++.+.+. ...+.+|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 111 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADP--VLRKKNGATPFLLAAIAGSVKLLKLFLSK--GADVNECDFYGFTAFME 111 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTCCBHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCcccCCHHHH
Confidence 456899999999999999999999987663 34688999999999999999999999998 66788899999999999
Q ss_pred HHHhch-----HHHHhcCccccccc----------CCCCCcHHHHHHHcCCCchHHHHHH--------------------
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVR----------DHNQTLPIDVAASLGHKDMPICMVS-------------------- 126 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~----------d~~G~TpLh~Aa~~g~~~iv~~Ll~-------------------- 126 (564)
|+ ..| +.|++.+.+. +.. +..|.||||+|+..|+.+++++|++
T Consensus 112 A~-~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a 189 (285)
T 1wdy_A 112 AA-VYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 189 (285)
T ss_dssp HH-HTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHH
T ss_pred HH-HhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence 99 999 7888887654 333 7789999999999999999999997
Q ss_pred cccCC----HHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHH
Q 043183 127 MNMLL----PDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVE 202 (564)
Q Consensus 127 ~~~~~----~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~ 202 (564)
+..+. .++++.|++.+.+. +.+|.+|+||||+|+..|+. ++++
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~--------------------------------~~v~ 236 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHL--------------------------------GLVQ 236 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCH--------------------------------HHHH
T ss_pred HHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCH--------------------------------HHHH
Confidence 22344 78899999987765 78899999999999999965 5666
Q ss_pred HHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcc
Q 043183 203 RLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLH 250 (564)
Q Consensus 203 ~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~ 250 (564)
.|+ ...+.+++.+|..|+||||+|+..|+.+++++|+++|+++.
T Consensus 237 ~Ll----~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 237 RLL----EQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280 (285)
T ss_dssp HHH----HSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred HHH----hccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 664 34567788999999999999999999999999999999873
No 25
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=2.6e-30 Score=249.70 Aligned_cols=200 Identities=17% Similarity=0.110 Sum_probs=158.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcc---cccCCCCCCCcHHH
Q 043183 4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAE---DLAKPNKHGGTALS 80 (564)
Q Consensus 4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~---~l~~~d~~G~TpLH 80 (564)
.|+||||.||+.|+.++++.|++..+..+ ...|..|.||||+|+..|+.+++++|++.+... ..+.+|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 58999999999999999999999844444 446899999999999999999999999984321 12677889999999
Q ss_pred HHHHhch-----HHHHhcCcccccccC-------------CCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcC
Q 043183 81 MLLHLEG-----RVMMKHNRSIAMVRD-------------HNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDR 142 (564)
Q Consensus 81 ~Aa~~~G-----~~Ll~~~~~~~~~~d-------------~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~ 142 (564)
+|+ ..| +.|++.+.+. +..+ ..|.||||+|+..|+.+++++|++ .+
T Consensus 81 ~A~-~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g 144 (232)
T 2rfa_A 81 IAV-INQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE--------------HG 144 (232)
T ss_dssp HHH-HTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH--------------TT
T ss_pred HHH-HcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH--------------CC
Confidence 999 999 8888887654 3333 379999999999999999999863 44
Q ss_pred CccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhh-Hhhhhc
Q 043183 143 PKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSE-ISRLIS 221 (564)
Q Consensus 143 ~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~-~~~~d~ 221 (564)
.+ ++.+|.+|+||||+|+..|+. +++ .++++.|++......... .+.+|.
T Consensus 145 a~-~~~~d~~g~t~L~~A~~~~~~------------------------~~~----~~i~~~Ll~~g~~~~~~~~~~~~~~ 195 (232)
T 2rfa_A 145 AD-IRAQDSLGNTVLHILILQPNK------------------------TFA----CQMYNLLLSYDGGDHLKSLELVPNN 195 (232)
T ss_dssp CC-TTCCCTTSCCHHHHHHTCSCH------------------------HHH----HHHHHHHHHTTCSCSSCCGGGCCCT
T ss_pred CC-CCCCCCCCCCHHHHHHHcCCh------------------------HHH----HHHHHHHHhcCCchhhhhhhccCCC
Confidence 44 478999999999999999954 221 234455544322211111 267899
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183 222 KPGALIFDAAKQGNVGFLLILTREYPNL 249 (564)
Q Consensus 222 ~G~TpLh~Aa~~g~~~iv~~LL~~~~~~ 249 (564)
.|+||||+|+..|+.+++++|++++++.
T Consensus 196 ~g~tpl~~A~~~g~~~~v~~Ll~~g~~~ 223 (232)
T 2rfa_A 196 QGLTPFKLAGVEGNIVMFQHLMQKRKHI 223 (232)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 9999999999999999999999998665
No 26
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.97 E-value=9.9e-32 Score=279.36 Aligned_cols=249 Identities=16% Similarity=0.103 Sum_probs=190.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHc------CCcccccCCCCCC
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKI------MEAEDLAKPNKHG 75 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~------~~~~~l~~~d~~G 75 (564)
+..|.||||.||..|+ ++++.|+..+ ++...+..|.||||+||..|+.+++++|+.. ..+.+++.+|..|
T Consensus 91 ~~~g~t~L~~Aa~~~~-~~~~~L~~~~---~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g 166 (373)
T 2fo1_E 91 EPESPIKLHTEAAGSY-AITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDE 166 (373)
T ss_dssp ---CCCHHHHHHHSSS-CCCSCCSTTT---TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTS
T ss_pred CCCCccHHHHHhcCCc-hHHHHhcccc---ccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCC
Confidence 4578999999999654 7777776543 3232237899999999999999998888731 1267889999999
Q ss_pred CcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCC--ccccc
Q 043183 76 GTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRP--KLATL 148 (564)
Q Consensus 76 ~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~--~~~~~ 148 (564)
.||||+|+ ..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++ .+. ...+.
T Consensus 167 ~TpL~~A~-~~g~~~iv~~Ll~~ga~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--------------~~~~~~~~~~ 230 (373)
T 2fo1_E 167 NTPLMLAV-LARRRRLVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLN--------------STKLKGDIEE 230 (373)
T ss_dssp CCHHHHHH-HHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHTT--------------SHHHHHTTSC
T ss_pred CCHHHHHH-HcChHHHHHHHHHCCCC-CcccCCCCCCHHHHHHHCCCHHHHHHHHh--------------cCccccChhh
Confidence 99999999 999 888888765 57889999999999999999999999964 221 23467
Q ss_pred cCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCCh---hhHhhhhcCCch
Q 043183 149 RAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSD---SEISRLISKPGA 225 (564)
Q Consensus 149 ~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~---~~~~~~d~~G~T 225 (564)
.|.+|.||||+|+..+..+ ..++++.|++...+.+. ...+..|..|.|
T Consensus 231 ~d~~g~t~L~~A~~~~~~~-----------------------------~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t 281 (373)
T 2fo1_E 231 LDRNGMTALMIVAHNEGRD-----------------------------QVASAKLLVEKGAKVDYDGAARKDSEKYKGRT 281 (373)
T ss_dssp CCTTSCCHHHHHHHSCSTT-----------------------------HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred cCCCCCCHHHHHHHhCCcc-----------------------------hHHHHHHHHHCCCCcccccccccCcccccCCC
Confidence 8999999999999987420 23667777765443322 123346789999
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccc
Q 043183 226 LIFDAAKQGNVGFLLILTREY-PNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRG 304 (564)
Q Consensus 226 pLh~Aa~~g~~~iv~~LL~~~-~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~ 304 (564)
|||+|+..|+.+++++|++.+ .++.... .+|+||||+|+..|+.+++++| ++ ...
T Consensus 282 ~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d----------~~g~TpL~~A~~~g~~~iv~~L-----------l~---~ga 337 (373)
T 2fo1_E 282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQD----------EDGKTPIMLAAQEGRIEVVMYL-----------IQ---QGA 337 (373)
T ss_dssp THHHHHSSCCHHHHHHHHHHSCCCTTCCC----------TTCCCHHHHHHHHTCHHHHHHH-----------HH---TTC
T ss_pred HHHHHHHhCCHHHHHHHHHhcCCCccCcC----------CCCCCHHHHHHHcCCHHHHHHH-----------HH---cCC
Confidence 999999999999999999887 5653322 8999999999999998888876 11 223
Q ss_pred hHHhhccCCCCchhhhHHH
Q 043183 305 FAEAKNREGLTPRALFTKE 323 (564)
Q Consensus 305 ~~~~~n~~g~t~~dl~~~~ 323 (564)
..+.+|.+|+||.++..+.
T Consensus 338 d~~~~d~~g~t~l~~A~~~ 356 (373)
T 2fo1_E 338 SVEAVDATDHTARQLAQAN 356 (373)
T ss_dssp CSSCCCSSSCCHHHHHHHT
T ss_pred CccCCCCCCCCHHHHHHHc
Confidence 4556788999999987553
No 27
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.97 E-value=4e-30 Score=249.05 Aligned_cols=209 Identities=19% Similarity=0.149 Sum_probs=177.1
Q ss_pred ccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHH
Q 043183 35 AIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPI 109 (564)
Q Consensus 35 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpL 109 (564)
..|.+|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+ ..| +.|++.+.+ ++.+|..|.|||
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L 81 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAA-ENNHLEAVKYLIKAGAL-VDPKDAEGSTCL 81 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH-HTTCHHHHHHHHTTTCC-CCCCCTTSCCHH
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHH-HhCCHHHHHHHHhCCCC-CCCCCCCCCcHH
Confidence 3578999999999999999999999998 6678889999999999999 999 788877654 577889999999
Q ss_pred HHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCc
Q 043183 110 DVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAED 189 (564)
Q Consensus 110 h~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h 189 (564)
|+|+..|+.+++++|+ +.++...+..|..|.||||+|+..|+.
T Consensus 82 ~~A~~~~~~~~~~~Ll--------------~~~~~~~~~~~~~g~t~L~~A~~~~~~----------------------- 124 (237)
T 3b7b_A 82 HLAAKKGHYEVVQYLL--------------SNGQMDVNCQDDGGWTPMIWATEYKHV----------------------- 124 (237)
T ss_dssp HHHHHTTCHHHHHHHH--------------TTTCCCTTCCCTTSCCHHHHHHHTTCH-----------------------
T ss_pred HHHHHcCCHHHHHHHH--------------hCCCCCcccCCCCCCCHHHHHHHcCCH-----------------------
Confidence 9999999999999885 356566688899999999999999964
Q ss_pred HHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCch
Q 043183 190 VEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNI 269 (564)
Q Consensus 190 ~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~Tp 269 (564)
++++.|++ .+.+++.+|..|.||||+|+..|+.+++++|++.++++.... ..|+||
T Consensus 125 ---------~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~----------~~g~t~ 180 (237)
T 3b7b_A 125 ---------DLVKLLLS-----KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN----------IHGDSP 180 (237)
T ss_dssp ---------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCC----------TTCCCH
T ss_pred ---------HHHHHHHH-----CCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcC----------CCCCCH
Confidence 66766655 345677889999999999999999999999999999884433 889999
Q ss_pred HHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHH
Q 043183 270 LHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTK 322 (564)
Q Consensus 270 LhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~ 322 (564)
||+|++.++.+++++|- + .......+|.+|+||.++..+
T Consensus 181 L~~A~~~~~~~~v~~Ll-----------~---~gad~~~~d~~g~t~l~~A~~ 219 (237)
T 3b7b_A 181 LHIAARENRYDCVVLFL-----------S---RDSDVTLKNKEGETPLQCASL 219 (237)
T ss_dssp HHHHHHTTCHHHHHHHH-----------T---TTCCTTCCCTTSCCHHHHSCT
T ss_pred HHHHHHhCCHhHHHHHH-----------H---cCCCCCccCCCCCCHHHHHHH
Confidence 99999999988877651 1 223456678999999998654
No 28
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=1.6e-30 Score=261.01 Aligned_cols=261 Identities=18% Similarity=0.152 Sum_probs=189.3
Q ss_pred HHHHcCCHHHHHHHHHhCcccc-------ccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183 11 RAALNGDWAVAKSIYDVYEGEI-------GIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL 83 (564)
Q Consensus 11 ~Aa~~G~~~~v~~Ll~~~~~~l-------~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa 83 (564)
.+++.|+.+.++.++....... ....+.+|.||||.||..|+.++|++|++. +.+++..|..|.||||+|+
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 81 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQAC 81 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHH
Confidence 5788888899998888744311 112345678999999999999999999998 5678899999999999999
Q ss_pred Hhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHH
Q 043183 84 HLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLH 158 (564)
Q Consensus 84 ~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh 158 (564)
..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++ .+.+ ++..|.+|.||||
T Consensus 82 -~~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~l~ 144 (299)
T 1s70_B 82 -IDDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLIS--------------QGAH-VGAVNSEGDTPLD 144 (299)
T ss_dssp -HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHH
T ss_pred -HcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHh--------------CCCC-CCCcCCCCCCHHH
Confidence 999 888887755 57889999999999999999999999863 4444 4778999999999
Q ss_pred HHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHH
Q 043183 159 ALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGF 238 (564)
Q Consensus 159 ~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~i 238 (564)
+|+..+.. ..++.++.................+......++..........+..|.||||+|+..|+.++
T Consensus 145 ~A~~~~~~----------~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 214 (299)
T 1s70_B 145 IAEEEAME----------ELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV 214 (299)
T ss_dssp HCCSHHHH----------HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHH
T ss_pred HHHhcchH----------HHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHH
Confidence 99987743 12222222111111111111111111111111222222333456789999999999999999
Q ss_pred HHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchh
Q 043183 239 LLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRA 318 (564)
Q Consensus 239 v~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~d 318 (564)
+++|+++++++.... .+|+||||+|+..|+.+++++| ++ .....+.+|..|+||.+
T Consensus 215 v~~Ll~~g~d~~~~d----------~~g~tpL~~A~~~~~~~~v~~L-----------l~---~gad~~~~d~~g~t~l~ 270 (299)
T 1s70_B 215 LKLLIQARYDVNIKD----------YDGWTPLHAAAHWGKEEACRIL-----------VE---NLCDMEAVNKVGQTAFD 270 (299)
T ss_dssp HHHHHTTTCCTTCCC----------TTCCCHHHHHHHTTCHHHHHHH-----------HH---TTCCTTCCCTTSCCTTT
T ss_pred HHHHHHcCCCCCCcC----------CCCCcHHHHHHhcCCHHHHHHH-----------HH---cCCCCCCcCCCCCCHHH
Confidence 999999999874433 8999999999999998888776 11 22345668899999999
Q ss_pred hhHHHh
Q 043183 319 LFTKEH 324 (564)
Q Consensus 319 l~~~~~ 324 (564)
+..+..
T Consensus 271 ~A~~~~ 276 (299)
T 1s70_B 271 VADEDI 276 (299)
T ss_dssp SCCSGG
T ss_pred HHHHHH
Confidence 875543
No 29
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=2.4e-29 Score=241.19 Aligned_cols=191 Identities=15% Similarity=0.076 Sum_probs=165.7
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|.+|+||||.||..|+.++++.|++.+.+. ...|..|.||||+|+..|+.+++++|++.+ +.+++.+|..|.||||+
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~ 98 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARMHDGTTPLIL 98 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHBT-TSCTTCCCTTCCCHHHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCcHHHH
Confidence 567999999999999999999999987653 446889999999999999999999999984 44788899999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP 156 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp 156 (564)
|+ ..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++ .+. .++.+|..|.||
T Consensus 99 A~-~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~-~~~~~~~~g~t~ 161 (223)
T 2f8y_A 99 AA-RLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK--------------NGA-NKDMQNNREETP 161 (223)
T ss_dssp HH-HHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHH--------------TTC-CTTCCCTTCCCH
T ss_pred HH-HhCcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHH--------------cCC-CCCCcCCCCcCH
Confidence 99 888 788887655 57789999999999999999999999863 443 447889999999
Q ss_pred HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183 157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV 236 (564)
Q Consensus 157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~ 236 (564)
||+|+..|+. ++++.|++. +.+++.+|..|.||||+|++.|+.
T Consensus 162 L~~A~~~~~~--------------------------------~~v~~Ll~~-----ga~~~~~~~~g~t~l~~A~~~~~~ 204 (223)
T 2f8y_A 162 LFLAAREGSY--------------------------------ETAKVLLDH-----FANRDITDHMDRLPRDIAQERMHH 204 (223)
T ss_dssp HHHHHHHTCH--------------------------------HHHHHHHHT-----TCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHcCCH--------------------------------HHHHHHHHc-----CCCCccccccCCCHHHHHHHhcch
Confidence 9999999964 667766553 456778899999999999999999
Q ss_pred HHHHHHHHhCCCc
Q 043183 237 GFLLILTREYPNL 249 (564)
Q Consensus 237 ~iv~~LL~~~~~~ 249 (564)
+++++|++++...
T Consensus 205 ~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 205 DIVRLLDEYNLVR 217 (223)
T ss_dssp HHHHHHHHTTCSS
T ss_pred HHHHHHHHcCCCc
Confidence 9999999998764
No 30
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1.5e-31 Score=259.27 Aligned_cols=212 Identities=15% Similarity=0.063 Sum_probs=171.5
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHhCcc---ccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCc
Q 043183 1 LTRSRRLQTYRAALNGDWAVAKSIYDVYEG---EIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGT 77 (564)
Q Consensus 1 l~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~---~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~T 77 (564)
.|.+|+||||.|+..|+.++++.|++..+. .+ ...|..|.||||+|+..|+.++|++|++. +.+++.+|..|.|
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t 80 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFL-NFQNNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNT 80 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCC-CCCCTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTTCCC
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHh-hccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCC
Confidence 367899999999999999999999987653 23 44688999999999999999999999988 6788899999999
Q ss_pred HHHHHHHhch-----HHHHhcCc-----ccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCcccc
Q 043183 78 ALSMLLHLEG-----RVMMKHNR-----SIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLAT 147 (564)
Q Consensus 78 pLH~Aa~~~G-----~~Ll~~~~-----~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~ 147 (564)
|||+|+ ..| +.|++.+. ...+..|..|.||||+|+..|+.+++++|++ .+.+. +
T Consensus 81 ~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~~~-~ 144 (236)
T 1ikn_D 81 PLHLAC-EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS--------------LGADV-N 144 (236)
T ss_dssp HHHHHH-HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH--------------HTCCT-T
T ss_pred HHHHHH-HcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCCC-C
Confidence 999999 998 78888764 3357788899999999999999999999853 55554 6
Q ss_pred ccCC-CCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchH
Q 043183 148 LRAG-DCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGAL 226 (564)
Q Consensus 148 ~~d~-~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~Tp 226 (564)
.+|. .|+||||+|+..|+. ++++.|++ .+.+++.+|..|.||
T Consensus 145 ~~~~~~g~tpL~~A~~~~~~--------------------------------~~v~~Ll~-----~ga~~~~~~~~g~tp 187 (236)
T 1ikn_D 145 AQEPCNGRTALHLAVDLQNP--------------------------------DLVSLLLK-----CGADVNRVTYQGYSP 187 (236)
T ss_dssp CCCTTTCCCHHHHHHHTTCH--------------------------------HHHHHHHT-----TTCCSCCCCTTCCCG
T ss_pred CCCCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHH-----cCCCCCcccCCCCCH
Confidence 6776 999999999999964 56666654 466788899999999
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCcccc-cccccchHHHhhcCCchHHHHHhcC
Q 043183 227 IFDAAKQGNVGFLLILTREYPNLHIS-YRRFESSGAHLQTRNNILHLAAMLP 277 (564)
Q Consensus 227 Lh~Aa~~g~~~iv~~LL~~~~~~~~~-~~r~~~i~n~~~~G~TpLhlAa~~~ 277 (564)
||+|+..|+.+++++|+++|++.... .+ .+|.||.+.+....
T Consensus 188 l~~A~~~~~~~~~~~Ll~~ga~~~~~~~~---------~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 188 YQLTWGRPSTRIQQQLGQLTLENLQMLPE---------SEDEESYDTESEFT 230 (236)
T ss_dssp GGGCTTSSCHHHHHHHHTTSCGGGSSCCC---------CCTTTCCCCC----
T ss_pred HHHHHccCchHHHHHHHHcchhhhhcCCc---------cchHHHHhhhcccc
Confidence 99999999999999999999876411 11 78888887765443
No 31
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=5.2e-30 Score=252.79 Aligned_cols=201 Identities=18% Similarity=0.184 Sum_probs=169.1
Q ss_pred CCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHH
Q 043183 39 RGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAA 113 (564)
Q Consensus 39 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa 113 (564)
+|.||||+||..|+.+++++|++. +.+++.+|..|.||||+|+ ..| +.|++.+.+ ++.+|..|.||||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQ--GWAVNIITADHVSPLHEAC-LGGHLSCVKILLKHGAQ-VNGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHH-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHH-HcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH
Confidence 589999999999999999999998 5678999999999999999 999 888888754 6788999999999999
Q ss_pred HcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHH
Q 043183 114 SLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQ 193 (564)
Q Consensus 114 ~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~ 193 (564)
..|+.+++++|++ .+.+. + .+.+|.||||+|+..|+.
T Consensus 78 ~~~~~~~v~~Ll~--------------~g~~~-~-~~~~g~t~L~~A~~~~~~--------------------------- 114 (261)
T 2xai_A 78 VSGSWDCVNLLLQ--------------HGASV-Q-PESDLASPIHEAARRGHV--------------------------- 114 (261)
T ss_dssp HHTCHHHHHHHHH--------------TTCCS-S-CSCTTCCHHHHHHHTTCH---------------------------
T ss_pred HcCCHHHHHHHHH--------------CCCCC-C-CCCCCCCHHHHHHHcCcH---------------------------
Confidence 9999999999864 54444 2 456799999999999965
Q ss_pred HHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHH
Q 043183 194 RLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLA 273 (564)
Q Consensus 194 ~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlA 273 (564)
++++.|++ .+.+++.+|..|.||||+|+..|+.+++++|+++++++.. . ..|+||||+|
T Consensus 115 -----~~v~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~----------~~g~t~Lh~A 173 (261)
T 2xai_A 115 -----ECVNSLIA-----YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-G----------KGQDSPLHAV 173 (261)
T ss_dssp -----HHHHHHHH-----TTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-C----------BTTBCHHHHH
T ss_pred -----HHHHHHHH-----cCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-C----------CCCCChHHHH
Confidence 56666655 3457788899999999999999999999999999998753 2 7899999999
Q ss_pred HhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhH
Q 043183 274 AMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFT 321 (564)
Q Consensus 274 a~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~ 321 (564)
+..++.+++++| ++ .....+.+|.+|+||.++..
T Consensus 174 ~~~~~~~~v~~L-----------l~---~gad~~~~d~~g~tpl~~A~ 207 (261)
T 2xai_A 174 ARTASEELACLL-----------MD---FGADTQAKNAEGKRPVELVP 207 (261)
T ss_dssp HHHTCHHHHHHH-----------HH---TTCCTTCCCTTSCCGGGGSC
T ss_pred HHcCCHHHHHHH-----------HH---cCCCCCCcCCCCCChhhhcc
Confidence 999998887766 11 23345678899999999865
No 32
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.96 E-value=5.5e-30 Score=256.14 Aligned_cols=205 Identities=15% Similarity=0.073 Sum_probs=165.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|..|.||||.|+..|+.++++.|++.+.+. +. .+|.||||+|+..|+.++|++|++. +.+++.+|..|.||||+
T Consensus 28 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~---~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~t~L~~ 101 (285)
T 3kea_A 28 DVHGHSASYYAIADNNVRLVCTLLNAGALK-NL---LENEFPLHQAATLEDTKIVKILLFS--GLDDSQFDDKGNTALYY 101 (285)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SC---CTTCCHHHHHTTSSSCHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CC---CCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCcHHHH
Confidence 567999999999999999999999987652 22 2589999999999999999999988 66788889999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCC-CcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCC-CCC
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQ-TLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAG-DCE 154 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G-~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~-~G~ 154 (564)
|+ ..| +.|++.+.+ ++.+|..| .||||+|+..|+.+++++|++ .+++. .|. .|.
T Consensus 102 A~-~~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~--------------~g~~~---~~~~~g~ 162 (285)
T 3kea_A 102 AV-DSGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVMLNDVSIVSYFLS--------------EIPST---FDLAILL 162 (285)
T ss_dssp HH-HTTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHHTTCHHHHHHHHT--------------TSCTT---CCCSTHH
T ss_pred HH-HcCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHHcCCHHHHHHHHh--------------CCCcc---ccccCCc
Confidence 99 888 788888755 57788888 799999999999999998864 44433 333 889
Q ss_pred cHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchH-HHHHHHc
Q 043183 155 TPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGAL-IFDAAKQ 233 (564)
Q Consensus 155 TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~Tp-Lh~Aa~~ 233 (564)
||||+|+..|+. ++++.|++ .+.+++.+|..|+|| ||+|+..
T Consensus 163 t~L~~A~~~g~~--------------------------------~~v~~Ll~-----~gad~n~~~~~g~t~~L~~A~~~ 205 (285)
T 3kea_A 163 SCIHITIKNGHV--------------------------------DMMILLLD-----YMTSTNTNNSLLFIPDIKLAIDN 205 (285)
T ss_dssp HHHHHHHHTTCH--------------------------------HHHHHHHH-----HHHHTCTTCCCBCCTTHHHHHHH
T ss_pred cHHHHHHHcChH--------------------------------HHHHHHHH-----cCCCCCcccCCCCChHHHHHHHc
Confidence 999999999854 56666655 356788889999997 9999999
Q ss_pred CCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 234 GNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 234 g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
|+.+++++|+++|+++.. .+ +.|+..|+.+++++|
T Consensus 206 ~~~~~v~~Ll~~gad~~~--------------~~---~~a~~~~~~~iv~~L 240 (285)
T 3kea_A 206 KDIEMLQALFKYDINIYS--------------AN---LENVLLDDAEIAKMI 240 (285)
T ss_dssp TCHHHHHHHTTSCBCSTT--------------TT---GGGGTTTCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCC--------------CC---hhhhhcCCHHHHHHH
Confidence 999999999999988732 11 356777887777766
No 33
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.96 E-value=9.1e-30 Score=246.85 Aligned_cols=212 Identities=17% Similarity=0.175 Sum_probs=172.5
Q ss_pred cccCCCCChHHHHHHhcCCHHHHHHHHHcC--CcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCC
Q 043183 34 IAIAKRGDTALRIAAAGKYIEFLKELVKIM--EAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQT 106 (564)
Q Consensus 34 ~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~--~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~ 106 (564)
...|.+|.||||+||..|+.+++++|++.. .+.+++.+|..|.||||+|+ ..| +.|++.+.+ ++.+|..|.
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~ 80 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV-ITTLPSVVRLLVTAGAS-PMALDRHGQ 80 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHH-HcCCHHHHHHHHHcCCC-ccccCCCCC
Confidence 346889999999999999999999999831 25678899999999999999 999 888887754 577899999
Q ss_pred cHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCC---ccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHh
Q 043183 107 LPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRP---KLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCF 183 (564)
Q Consensus 107 TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~---~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~ 183 (564)
||||+|+..|+.+++++|++ .++ ...+..|.+|.||||+|+..|+.
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~--------------~~~~~~~~~~~~~~~g~t~L~~A~~~~~~----------------- 129 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLD--------------SAAPGTLDLEARNYDGLTALHVAVNTECQ----------------- 129 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHH--------------HSCTTSCCTTCCCTTSCCHHHHHHHHTCH-----------------
T ss_pred CHHHHHHHcCCHHHHHHHHH--------------cCCCccccccccCcCCCcHHHHHHHcCCH-----------------
Confidence 99999999999999999864 443 13477899999999999999964
Q ss_pred hhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhh-cCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHH
Q 043183 184 NLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLI-SKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAH 262 (564)
Q Consensus 184 ~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d-~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~ 262 (564)
++++.|++. +.+++..| ..|.||||+|+..|+.+++++|+++++++....
T Consensus 130 ---------------~~~~~Ll~~-----g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~--------- 180 (241)
T 1k1a_A 130 ---------------ETVQLLLER-----GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM--------- 180 (241)
T ss_dssp ---------------HHHHHHHHT-----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBC---------
T ss_pred ---------------HHHHHHHHc-----CCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC---------
Confidence 667766553 44566666 789999999999999999999999999884443
Q ss_pred hhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHH
Q 043183 263 LQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTK 322 (564)
Q Consensus 263 ~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~ 322 (564)
.+|+||||+|+..|+.+++++| ++ .....+.+|.+|+||.++..+
T Consensus 181 -~~g~t~L~~A~~~~~~~~v~~L-----------l~---~ga~~~~~~~~g~tpl~~A~~ 225 (241)
T 1k1a_A 181 -YSGSSALHSASGRGLLPLVRTL-----------VR---SGADSSLKNCHNDTPLMVARS 225 (241)
T ss_dssp -TTSCBHHHHHHHHTCHHHHHHH-----------HH---TTCCTTCCCTTSCCTTTTCSS
T ss_pred -CCCCCHHHHHHHcCCHHHHHHH-----------Hh---cCCCCCCcCCCCCCHHHHHHh
Confidence 8999999999999998887766 11 223356678899999998643
No 34
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.96 E-value=7.3e-30 Score=245.53 Aligned_cols=207 Identities=12% Similarity=0.061 Sum_probs=169.3
Q ss_pred CChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcC--cccccccCCCCCcHHHHH
Q 043183 40 GDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHN--RSIAMVRDHNQTLPIDVA 112 (564)
Q Consensus 40 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~--~~~~~~~d~~G~TpLh~A 112 (564)
|+||||.|+..|+.++++.|++.+ +...+.+|..|.||||+|+ ..| +.|++.+ ++.....|..|.||||+|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSV-SFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcC-ccccccCCCCCCCHHHHHH-HcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 789999999999999999999984 3345568999999999999 999 8888887 554444889999999999
Q ss_pred HHcCCCchHHHHHHcccCCHHHHHHHHHcC-CccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHH
Q 043183 113 ASLGHKDMPICMVSMNMLLPDVALQLCRDR-PKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVE 191 (564)
Q Consensus 113 a~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~-~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~ 191 (564)
+..|+.+++++|++ .+ +...+..|.+|.||||+|+..|+.
T Consensus 80 ~~~~~~~~~~~Ll~--------------~g~~~~~~~~~~~g~t~L~~A~~~~~~------------------------- 120 (228)
T 2dzn_A 80 CSVGNLEVVKSLYD--------------RPLKPDLNKITNQGVTCLHLAVGKKWF------------------------- 120 (228)
T ss_dssp HHHCCHHHHHHHHS--------------SSSCCCTTCCCTTCCCHHHHHHHTTCH-------------------------
T ss_pred HHcCCHHHHHHHHh--------------CCCCcccccCCcCCCCHHHHHHHcCCH-------------------------
Confidence 99999999999863 43 134477899999999999999965
Q ss_pred HHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhC-CCcccccccccchHHHhhcCCchH
Q 043183 192 VQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREY-PNLHISYRRFESSGAHLQTRNNIL 270 (564)
Q Consensus 192 v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~-~~~~~~~~r~~~i~n~~~~G~TpL 270 (564)
++++.|++ .+.+++.+|..|.||||+|+..|+.+++++|++.+ .++.... .+|+|||
T Consensus 121 -------~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d----------~~g~t~L 178 (228)
T 2dzn_A 121 -------EVSQFLIE-----NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQD----------KQGWTPL 178 (228)
T ss_dssp -------HHHHHHHH-----TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCC----------TTSCCHH
T ss_pred -------hHHHHHHH-----cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcC----------CCCCCHH
Confidence 66776655 35567888999999999999999999999999999 5653332 8999999
Q ss_pred HHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHH
Q 043183 271 HLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTK 322 (564)
Q Consensus 271 hlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~ 322 (564)
|+|+..|+.+++++|- + + .......+|.+|+||.++..+
T Consensus 179 ~~A~~~~~~~~v~~Ll------~----~---~ga~~~~~~~~g~t~l~~A~~ 217 (228)
T 2dzn_A 179 FHALAEGHGDAAVLLV------E----K---YGAEYDLVDNKGAKAEDVALN 217 (228)
T ss_dssp HHHHHTTCHHHHHHHH------H----H---HCCCSCCBCTTSCBGGGGCSS
T ss_pred HHHHHcCCHHHHHHHH------H----h---cCCCCCccCCCCCcHHHHHHH
Confidence 9999999988877651 0 1 233456688899999998643
No 35
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.96 E-value=2.9e-29 Score=246.10 Aligned_cols=190 Identities=16% Similarity=0.098 Sum_probs=162.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|..|+||||.|+..|+.++++.|++.+.+. ...|..|.||||+|+..|+.+++++|++.+ ..+++.+|..|.||||+
T Consensus 54 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~ 130 (253)
T 1yyh_A 54 DRTGETALHLAARYSRSDAAKRLLEASADA--NIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARMHDGTTPLIL 130 (253)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHST-TSCTTCCCTTCCCHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCcHHHH
Confidence 567999999999999999999999987663 446889999999999999999999999984 34788899999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP 156 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp 156 (564)
|+ ..| +.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++ .+.+ ++.+|.+|.||
T Consensus 131 A~-~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~--------------~ga~-~~~~~~~g~tp 193 (253)
T 1yyh_A 131 AA-RLAVEGMLEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLK--------------NGAN-KDMQNNREETP 193 (253)
T ss_dssp HH-HHTCSSHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCH
T ss_pred HH-HcChHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-CCCcCCCCCCH
Confidence 99 888 888887755 57889999999999999999999999863 4444 47889999999
Q ss_pred HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183 157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV 236 (564)
Q Consensus 157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~ 236 (564)
||+|+..|+. ++++.|++ .+.+++.+|..|+||||+|+++|+.
T Consensus 194 L~~A~~~~~~--------------------------------~~v~~Ll~-----~ga~~~~~d~~g~tpl~~A~~~g~~ 236 (253)
T 1yyh_A 194 LFLAAREGSY--------------------------------ETAKVLLD-----HFANRDITDHMDRLPRDIAQERMHH 236 (253)
T ss_dssp HHHHHHHTCH--------------------------------HHHHHHHH-----TTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred HHHHHHCCCH--------------------------------HHHHHHHH-----cCCCccccccCCCCHHHHHHHcCCH
Confidence 9999999964 66776655 3556788899999999999999999
Q ss_pred HHHHHHHHhCCC
Q 043183 237 GFLLILTREYPN 248 (564)
Q Consensus 237 ~iv~~LL~~~~~ 248 (564)
+++++|.+..+.
T Consensus 237 ~i~~~l~~~~~~ 248 (253)
T 1yyh_A 237 DIVRLLDLEHHH 248 (253)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHHhhh
Confidence 999999976554
No 36
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.96 E-value=2.1e-29 Score=242.93 Aligned_cols=189 Identities=15% Similarity=0.123 Sum_probs=164.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|..|.||||.|+..|+.++++.|++.+.+. ...|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 37 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 112 (231)
T 3aji_A 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPV--NDKDDAGWSPLHIAASAGXDEIVKALLVK--GAHVNAVNQNGCTPLHY 112 (231)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHhCCCC--CCcCCCCCCHHHHHHHcCHHHHHHHHHHc--CCCCCCCCCCCCCHHHH
Confidence 567999999999999999999999987653 44688999999999999999999999998 66788899999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP 156 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp 156 (564)
|+ ..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++ .+. .++.+|.+|+||
T Consensus 113 A~-~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~-~~~~~~~~g~t~ 175 (231)
T 3aji_A 113 AA-SKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLF--------------YKA-STNIQDTEGNTP 175 (231)
T ss_dssp HH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH--------------TTC-CSCCCCTTSCCH
T ss_pred HH-HcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHh--------------cCC-CccccCCCCCCH
Confidence 99 998 778887654 57789999999999999999999999863 443 447889999999
Q ss_pred HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCH
Q 043183 157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNV 236 (564)
Q Consensus 157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~ 236 (564)
||+|+..|+. ++++.|++ .+.+++.+|..|.||||+|+..++.
T Consensus 176 L~~A~~~~~~--------------------------------~~v~~Ll~-----~ga~~~~~~~~g~t~l~~A~~~~~~ 218 (231)
T 3aji_A 176 LHLACDEERV--------------------------------EEAKFLVT-----QGASIYIENKEEKTPLQVAKGGLGL 218 (231)
T ss_dssp HHHHHHTTCH--------------------------------HHHHHHHH-----TTCCSCCCCTTSCCHHHHSCHHHHH
T ss_pred HHHHHHCCCH--------------------------------HHHHHHHH-----CCCCCCCCCCCCCCHHHHHHhhHHH
Confidence 9999999964 66776655 3556788899999999999999999
Q ss_pred HHHHHHHHhCCC
Q 043183 237 GFLLILTREYPN 248 (564)
Q Consensus 237 ~iv~~LL~~~~~ 248 (564)
+++++|++++++
T Consensus 219 ~i~~lL~~~~a~ 230 (231)
T 3aji_A 219 ILKRLAEGEEAS 230 (231)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHcccccc
Confidence 999999998765
No 37
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=7e-30 Score=264.14 Aligned_cols=226 Identities=14% Similarity=0.078 Sum_probs=178.7
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCC--ccccc----------
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIME--AEDLA---------- 69 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~--~~~l~---------- 69 (564)
|..|.||||.||..|+.++|+.|++.+... .+.+|.||||+|+..|+.++|++|++... +.+++
T Consensus 50 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 125 (364)
T 3ljn_A 50 NRFGCTALHLACKFGCVDTAKYLASVGEVH----SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDERE 125 (364)
T ss_dssp CTTCCCHHHHHHHHCCHHHHHHHHHHCCCC----CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCC
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHCCCCc----cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHh
Confidence 567999999999999999999999998742 23589999999999999999999999721 11222
Q ss_pred -------CCCCCCCcHHHHHHHhch-------HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHH
Q 043183 70 -------KPNKHGGTALSMLLHLEG-------RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVA 135 (564)
Q Consensus 70 -------~~d~~G~TpLH~Aa~~~G-------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~ 135 (564)
.+|..|.||||+|+ ..| +.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++
T Consensus 126 ~~~~~~~~~~~~g~t~L~~A~-~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--------- 194 (364)
T 3ljn_A 126 VNEIGSHVKHCKGQTALHWCV-GLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMD--------- 194 (364)
T ss_dssp EEEETTEEEEESCCCHHHHHH-HSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH---------
T ss_pred hhhhccccCCCCCCCHHHHHH-HcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHh---------
Confidence 27889999999999 776 788888654 57889999999999999999999999864
Q ss_pred HHHHHcCCcc----ccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccC
Q 043183 136 LQLCRDRPKL----ATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALL 211 (564)
Q Consensus 136 ~~Ll~~~~~~----~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~ 211 (564)
.+++. ++..|.+|+||||+|+..|+. ++++.|++
T Consensus 195 -----~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~--------------------------------~~v~~Ll~----- 232 (364)
T 3ljn_A 195 -----TVPSKSSLRLDYANKQGNSHLHWAILINWE--------------------------------DVAMRFVE----- 232 (364)
T ss_dssp -----HCSCSSSCCTTCCCTTCCCTTHHHHTTTCH--------------------------------HHHHHHHT-----
T ss_pred -----cccccccccccccCCCCCcHHHHHHHcCCH--------------------------------HHHHHHHH-----
Confidence 44441 578899999999999999964 56666644
Q ss_pred ChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHH-h-hcCCchHHHHHhcCCCCcccc
Q 043183 212 SDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAH-L-QTRNNILHLAAMLPPQDRLNI 284 (564)
Q Consensus 212 ~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~-~-~~G~TpLhlAa~~~~~~~~~~ 284 (564)
.+.+++.+|..|.||||+|+..|+.+++++|++++++..........-... . ..|+|||+.|+..++.+.+..
T Consensus 233 ~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ 307 (364)
T 3ljn_A 233 MGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ 307 (364)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHH
T ss_pred cCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHH
Confidence 466788999999999999999999999999999987652211000000000 1 788999999998886655443
No 38
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=4.4e-29 Score=241.04 Aligned_cols=184 Identities=17% Similarity=0.119 Sum_probs=155.1
Q ss_pred CCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccc----cccCCCCCcHH
Q 043183 39 RGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIA----MVRDHNQTLPI 109 (564)
Q Consensus 39 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~----~~~d~~G~TpL 109 (564)
.|+||||+|+..|+.+++++|++. .+.+++.+|..|.||||+|+ ..| +.|++.+++.. ..+|..|.|||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-~g~~~~~~~~~g~t~L~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L 79 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKF-EGCEVHQRGAMGETALHIAA-LYDNLEAAMVLMEAAPELVFEPMTSELYEGQTAL 79 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTT-TCSCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHH-HcCCHHHHHHHHHcCchhccccccccCCCCcCHH
Confidence 589999999999999999999987 36678999999999999999 999 88888887653 45677999999
Q ss_pred HHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCcccccc-------------CCCCCcHHHHHHhCCCCCccccccccc
Q 043183 110 DVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLR-------------AGDCETPLHALARKNLTSSNFINQNQR 176 (564)
Q Consensus 110 h~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~-------------d~~G~TpLh~Aa~~g~~~~~f~~~~~~ 176 (564)
|+|+..|+.+++++|++ .+.+. +.. |.+|+||||+|+..|+.
T Consensus 80 ~~A~~~~~~~~v~~Ll~--------------~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~---------- 134 (232)
T 2rfa_A 80 HIAVINQNVNLVRALLA--------------RGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSE---------- 134 (232)
T ss_dssp HHHHHTTCHHHHHHHHH--------------TTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCH----------
T ss_pred HHHHHcCCHHHHHHHHh--------------CCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCH----------
Confidence 99999999999999865 33332 233 44899999999999965
Q ss_pred chHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHH----HHHHHhCCCcc--
Q 043183 177 GIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFL----LILTREYPNLH-- 250 (564)
Q Consensus 177 ~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv----~~LL~~~~~~~-- 250 (564)
++++.|++ .+.+++.+|..|+||||+|+..|+.+++ ++|++.+++..
T Consensus 135 ----------------------~~v~~Ll~-----~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~ 187 (232)
T 2rfa_A 135 ----------------------EIVRLLIE-----HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLK 187 (232)
T ss_dssp ----------------------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSC
T ss_pred ----------------------HHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhh
Confidence 66777654 3567888999999999999999999988 99999998763
Q ss_pred ---cccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 251 ---ISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 251 ---~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
...+ .+|+||||+|++.|+.+++++|
T Consensus 188 ~~~~~~~---------~~g~tpl~~A~~~g~~~~v~~L 216 (232)
T 2rfa_A 188 SLELVPN---------NQGLTPFKLAGVEGNIVMFQHL 216 (232)
T ss_dssp CGGGCCC---------TTSCCHHHHHHHHTCHHHHHHH
T ss_pred hhhccCC---------CCCCCHHHHHHHcCCHHHHHHH
Confidence 1112 8999999999999999988876
No 39
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.96 E-value=1.2e-29 Score=251.38 Aligned_cols=209 Identities=16% Similarity=0.142 Sum_probs=151.5
Q ss_pred cCCCCChHHHHHHhcCCHHHHHHHHHcCCcc------cccCCCCCCCcHHHHHHHhch------HHHHhcCcccccccCC
Q 043183 36 IAKRGDTALRIAAAGKYIEFLKELVKIMEAE------DLAKPNKHGGTALSMLLHLEG------RVMMKHNRSIAMVRDH 103 (564)
Q Consensus 36 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~------~l~~~d~~G~TpLH~Aa~~~G------~~Ll~~~~~~~~~~d~ 103 (564)
.|..+.||||.||..|+.++|++|++.+... .++..|..|.||||.|+ ..+ +.|++.+.+ ++.+|.
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~-~~~~~~~~v~~Ll~~Gad-vn~~d~ 84 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCP-KCAPAQKRLAKVPASGLG-VNVTSQ 84 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC-----------------------------------------CCCC-TTCCCT
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHH-HhCCHHHHHHHHHHCCCC-CCCcCC
Confidence 4677889999999999999999999885321 25677889999999999 777 556666644 688999
Q ss_pred CCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHh
Q 043183 104 NQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCF 183 (564)
Q Consensus 104 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~ 183 (564)
+|+||||+||..|+.+++++|++ .+.+ ++..+.+|.||+|+|+..++.
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~--------------~~a~-~~~~~~~g~t~l~~a~~~~~~----------------- 132 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLK--------------HGAN-AGARNADQAVPLHLACQQGHF----------------- 132 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHH--------------TTCC-TTCCCTTCCCHHHHHHHHTCH-----------------
T ss_pred CCCCHHHHHHHcCcHHHHHHHHh--------------cCCC-cCccCCCCCCccccccccChH-----------------
Confidence 99999999999999999999863 4444 477899999999999999864
Q ss_pred hhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHh
Q 043183 184 NLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHL 263 (564)
Q Consensus 184 ~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~ 263 (564)
++++.|++ .+.+++.+|..|+||||+||..|+.+++++|+++|+++....
T Consensus 133 ---------------~~~~~Ll~-----~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~---------- 182 (269)
T 4b93_B 133 ---------------QVVKCLLD-----SNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASN---------- 182 (269)
T ss_dssp ---------------HHHHHHHH-----TTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBC----------
T ss_pred ---------------HHHHHHHH-----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccc----------
Confidence 56666654 355778899999999999999999999999999999984433
Q ss_pred hcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhhHH
Q 043183 264 QTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALFTK 322 (564)
Q Consensus 264 ~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~~~ 322 (564)
..|+||||+|+..|+.+++++| ++ .....+.+|.+|+||.++..+
T Consensus 183 ~~g~t~Lh~A~~~g~~~~v~~L-----------l~---~Gad~~~~d~~G~TpL~~A~~ 227 (269)
T 4b93_B 183 NKGNTALHEAVIEKHVFVVELL-----------LL---HGASVQVLNKRQRTAVDCAEQ 227 (269)
T ss_dssp TTSCBHHHHHHHTTCHHHHHHH-----------HH---TTCCSCCCCTTSCCSGGGSCT
T ss_pred cCCCcHHHHHHHcCCHHHHHHH-----------HH---CCCCCCCcCCCCCCHHHHHHh
Confidence 8999999999999999888876 22 223456688999999998643
No 40
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=4.7e-29 Score=244.83 Aligned_cols=200 Identities=15% Similarity=0.108 Sum_probs=153.9
Q ss_pred CCcHHHHHHHcCCHHHH----HHHHHhCcccccc---ccCCCCChHHHHHHhc---CCHHHHHHHHHcCCccc-------
Q 043183 5 RRLQTYRAALNGDWAVA----KSIYDVYEGEIGI---AIAKRGDTALRIAAAG---KYIEFLKELVKIMEAED------- 67 (564)
Q Consensus 5 g~t~Lh~Aa~~G~~~~v----~~Ll~~~~~~l~~---~~~~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~------- 67 (564)
|+||||.||+.|+.+.+ +.|++.+.+ ++. ..|.+|.||||+|+.. |+.++|++|++.+...+
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 78999999999999855 555555554 322 2588999999999999 99999999999842211
Q ss_pred --ccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCC-------------CCcHHHHHHHcCCCchHHHHHHc
Q 043183 68 --LAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHN-------------QTLPIDVAASLGHKDMPICMVSM 127 (564)
Q Consensus 68 --l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~-------------G~TpLh~Aa~~g~~~iv~~Ll~~ 127 (564)
...+|..|.||||+|+ ..| +.|++.+.+ ++.+|.. |.||||+|+..|+.+++++|+
T Consensus 81 ~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll-- 156 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAI-EKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL-- 156 (256)
T ss_dssp CCCCSTTTTTCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH--
T ss_pred cccccccccCCCHHHHHH-HcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH--
Confidence 1134578999999999 999 888888765 4556655 999999999999999999985
Q ss_pred ccCCHHHHHHHHHc--CCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHH
Q 043183 128 NMLLPDVALQLCRD--RPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLC 205 (564)
Q Consensus 128 ~~~~~~i~~~Ll~~--~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~ 205 (564)
+. .+..++.+|.+|+||||+|+..++. +.+..+ ...++++.|+
T Consensus 157 ------------~~~~~ga~~n~~d~~g~TpLh~A~~~~~~----------------------~~~~~~-~~~~iv~~Ll 201 (256)
T 2etb_A 157 ------------ENPHQPASLEATDSLGNTVLHALVMIADN----------------------SPENSA-LVIHMYDGLL 201 (256)
T ss_dssp ------------HCSSCCCCTTCCCTTSCCHHHHHHHHCCS----------------------CHHHHH-HHHHHHHHHH
T ss_pred ------------hccccCCCcCccCCCCCCHHHHHHHcccC----------------------CchhhH-HHHHHHHHHH
Confidence 32 4455588999999999999984432 211110 0123666665
Q ss_pred HhhccCChhhH-------hhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183 206 GKVALLSDSEI-------SRLISKPGALIFDAAKQGNVGFLLILTREYPNL 249 (564)
Q Consensus 206 ~~~l~~~~~~~-------~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~ 249 (564)
+. +.++ +.+|..|+||||+|+..|+.+++++|++++++.
T Consensus 202 ~~-----ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 202 QM-----GARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HH-----HHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hc-----CCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC
Confidence 43 5566 889999999999999999999999999998764
No 41
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=4e-29 Score=254.96 Aligned_cols=204 Identities=12% Similarity=0.083 Sum_probs=152.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch
Q 043183 8 QTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG 87 (564)
Q Consensus 8 ~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G 87 (564)
.+|.|+..+..++++.|++.+.+ ++...|.+|.||||+||..|+.++|++|++. +.+++.+|..|.||||+|+ ..|
T Consensus 100 ~~~~a~~~~~~~~~~~l~~~g~d-vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~--Gad~n~~d~~g~TpLh~A~-~~g 175 (327)
T 1sw6_A 100 QQHVSFDSLLQEVNDAFPNTQLN-LNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSNRLYGDNMGESCLVKAV-KSV 175 (327)
T ss_dssp ----CHHHHHHHHHHHCTTSCCC-SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTBCCTTCCCHHHHHH-HSS
T ss_pred hhHHHHHhhHHHHHHHHHhcCCC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH-Hhc
Confidence 35777877778888888876654 3332689999999999999999999999999 6788999999999999999 864
Q ss_pred --------HHHHhcCcccccccCCCCCcHHHHHHH----cCCCchHHHHHHcccCCHHHHHHHHHc------------CC
Q 043183 88 --------RVMMKHNRSIAMVRDHNQTLPIDVAAS----LGHKDMPICMVSMNMLLPDVALQLCRD------------RP 143 (564)
Q Consensus 88 --------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~----~g~~~iv~~Ll~~~~~~~~i~~~Ll~~------------~~ 143 (564)
+.|++.....++.+|..|+||||+|+. .|+.+++++|++. ...++.+ .+
T Consensus 176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~-------~~~~~~~~~~~~i~~~~~~~g 248 (327)
T 1sw6_A 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI-------LMGWIVKKQNRPIQSGTNEKE 248 (327)
T ss_dssp HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH-------HHHHHHHGGGCCEEEC-----
T ss_pred ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH-------HHHHHhcccchHHHhhhhccc
Confidence 677777656678899999999999999 8999999999852 1111111 13
Q ss_pred ccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCC
Q 043183 144 KLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKP 223 (564)
Q Consensus 144 ~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G 223 (564)
..++.+|.+|.||||+|+.. +.|++. +++.+|..|
T Consensus 249 ~~~~~~~~~g~t~L~~a~~~--------------------------------------~~Ll~~-------~~n~~d~~G 283 (327)
T 1sw6_A 249 SKPNDKNGERKDSILENLDL--------------------------------------KWIIAN-------MLNAQDSNG 283 (327)
T ss_dssp -----------CHHHHHCSH--------------------------------------HHHHHH-------TTTCCCTTS
T ss_pred CCcccccccCCChhHHHHHH--------------------------------------HHHHHh-------CCCCCCCCC
Confidence 44577899999999999841 223332 477889999
Q ss_pred chHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcC
Q 043183 224 GALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLP 277 (564)
Q Consensus 224 ~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~ 277 (564)
+||||+|+..|+.++|++|+++|+++.... .+|+||||+|++.|
T Consensus 284 ~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d----------~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 284 DTCLNIAARLGNISIVDALLDYGADPFIAN----------KSGLRPVDFGAGLE 327 (327)
T ss_dssp CCHHHHHHHHCCHHHHHHHHHTTCCTTCCC----------TTSCCGGGGTCC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCcccC----------CCCCCHHHHHHhcC
Confidence 999999999999999999999999984443 89999999999765
No 42
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=4.9e-29 Score=247.20 Aligned_cols=203 Identities=15% Similarity=0.169 Sum_probs=157.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCc---ccc---ccccCCCCChHHHHHHhc---CCHHHHHHHHHcCCc-------
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYE---GEI---GIAIAKRGDTALRIAAAG---KYIEFLKELVKIMEA------- 65 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~---~~l---~~~~~~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~------- 65 (564)
|..|.||||.||+.|+.++|+.|++... ..+ ....+..|.||||+|+.. |+.++|++|++.+..
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~ 89 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF 89 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence 5679999999999999999999998522 111 113478999999999987 999999999998421
Q ss_pred --ccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCC--------------CCCcHHHHHHHcCCCchHHHH
Q 043183 66 --EDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDH--------------NQTLPIDVAASLGHKDMPICM 124 (564)
Q Consensus 66 --~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~--------------~G~TpLh~Aa~~g~~~iv~~L 124 (564)
.....+|..|.||||+|+ ..| +.|++.+.+. +.+|. .|.||||+|+..|+.+++++|
T Consensus 90 i~~~~~~~d~~g~tpL~~A~-~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 167 (273)
T 2pnn_A 90 VNASYTDSYYKGQTALHIAI-ERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167 (273)
T ss_dssp HTCCCCSTTTTTCCHHHHHH-HTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred hhcccccccCCCCCHHHHHH-HcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 112336779999999999 999 8888887654 55554 799999999999999999998
Q ss_pred HHcccCCHHHHHHHHHc--CCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHH
Q 043183 125 VSMNMLLPDVALQLCRD--RPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVE 202 (564)
Q Consensus 125 l~~~~~~~~i~~~Ll~~--~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~ 202 (564)
+ +. .+..++.+|.+|+||||+|+..|+. ..+... ...++++
T Consensus 168 l--------------~~~~~gad~~~~d~~g~tpLh~A~~~~~~----------------------~~~~~~-~~~~~v~ 210 (273)
T 2pnn_A 168 L--------------QNSWQPADISARDSVGNTVLHALVEVADN----------------------TVDNTK-FVTSMYN 210 (273)
T ss_dssp H--------------HCSSCCCCTTCCCTTSCCHHHHHHHHCCS----------------------CHHHHH-HHHHHHH
T ss_pred H--------------hcccCCCCceeeCCCCCcHHHHHHHccCc----------------------chhHHH-HHHHHHH
Confidence 5 32 4455688999999999999998863 111110 1135666
Q ss_pred HHHHhhccCChhhHh-------hhhcCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 043183 203 RLCGKVALLSDSEIS-------RLISKPGALIFDAAKQGNVGFLLILTREYPN 248 (564)
Q Consensus 203 ~l~~~~l~~~~~~~~-------~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~ 248 (564)
.|++. +.+++ .+|..|+||||+|++.|+.+++++|+++|+.
T Consensus 211 ~Ll~~-----ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 211 EILIL-----GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258 (273)
T ss_dssp HHHHH-----HHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHh-----hhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCC
Confidence 66543 44554 5899999999999999999999999999983
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.96 E-value=5.8e-30 Score=248.13 Aligned_cols=211 Identities=12% Similarity=0.108 Sum_probs=167.2
Q ss_pred ccCCCCChHHHHHHhcCCHHHHHHHHHcCCc--ccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCc
Q 043183 35 AIAKRGDTALRIAAAGKYIEFLKELVKIMEA--EDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTL 107 (564)
Q Consensus 35 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~--~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~T 107 (564)
..|.+|.||||+|+..|+.+++++|++.+.. .+++.+|..|.||||+|+ ..| +.|++.+.+ ++.+|..|.|
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t 80 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAV-ITNQPEIAEALLGAGCD-PELRDFRGNT 80 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHH-HTTCHHHHHCCCSCCCC-SCCCCTTCCC
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-CCCcCCCCCC
Confidence 3588999999999999999999999987532 368899999999999999 999 677776644 5788999999
Q ss_pred HHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCC-----ccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHH
Q 043183 108 PIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRP-----KLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRC 182 (564)
Q Consensus 108 pLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~-----~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~ 182 (564)
|||+|+..|+.+++++|++ .+. ...+..|..|.||||+|+..|+.
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~--------------~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~---------------- 130 (236)
T 1ikn_D 81 PLHLACEQGCLASVGVLTQ--------------SCTTPHLHSILKATNYNGHTCLHLASIHGYL---------------- 130 (236)
T ss_dssp HHHHHHHHTCHHHHHHHHH--------------STTTTSSSCGGGCCCTTCCCHHHHHHHTTCH----------------
T ss_pred HHHHHHHcCCHHHHHHHHh--------------cccchhHHHHhhccCCCCCCHHHHHHHcCCH----------------
Confidence 9999999999999999864 332 33577889999999999999965
Q ss_pred hhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhc-CCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHH
Q 043183 183 FNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLIS-KPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGA 261 (564)
Q Consensus 183 ~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~-~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n 261 (564)
++++.|++. +.+++.+|. .|.||||+|+..|+.+++++|+++|+++....
T Consensus 131 ----------------~~v~~Ll~~-----g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-------- 181 (236)
T 1ikn_D 131 ----------------GIVELLVSL-----GADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT-------- 181 (236)
T ss_dssp ----------------HHHHHHHHH-----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC--------
T ss_pred ----------------HHHHHHHHc-----CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc--------
Confidence 677777653 456677777 89999999999999999999999999885443
Q ss_pred HhhcCCchHHHHHhcCCCCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhh
Q 043183 262 HLQTRNNILHLAAMLPPQDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALF 320 (564)
Q Consensus 262 ~~~~G~TpLhlAa~~~~~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~ 320 (564)
..|+||||+|+..++.+++++|. +... .......|.+|.|+.+..
T Consensus 182 --~~g~tpl~~A~~~~~~~~~~~Ll-----------~~ga-~~~~~~~~~~~~~~~~~~ 226 (236)
T 1ikn_D 182 --YQGYSPYQLTWGRPSTRIQQQLG-----------QLTL-ENLQMLPESEDEESYDTE 226 (236)
T ss_dssp --TTCCCGGGGCTTSSCHHHHHHHH-----------TTSC-GGGSSCCCCCTTTCCCCC
T ss_pred --CCCCCHHHHHHccCchHHHHHHH-----------Hcch-hhhhcCCccchHHHHhhh
Confidence 89999999999999988887761 1111 112345677888888764
No 44
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.95 E-value=2.2e-28 Score=230.60 Aligned_cols=186 Identities=13% Similarity=0.098 Sum_probs=160.5
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHH
Q 043183 37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDV 111 (564)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~ 111 (564)
+..+.||||.|+..|+.+.++.|++.. +.+++..|..|.||||+|+ ..| +.|++.+.+ ++.+|..|.||||+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~ 78 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAV-HNNDIEIAKALIDRGAD-INLQNSISDSPYLY 78 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence 457899999999999999999999883 4578999999999999999 999 888888755 57789999999999
Q ss_pred HHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHH
Q 043183 112 AASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVE 191 (564)
Q Consensus 112 Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~ 191 (564)
|+..|+.+++++|+ +..+...+..|..|.||||+|+..|+.
T Consensus 79 A~~~~~~~~~~~Ll--------------~~~~~~~~~~~~~g~t~L~~A~~~~~~------------------------- 119 (201)
T 3hra_A 79 AGAQGRTEILAYML--------------KHATPDLNKHNRYGGNALIPAAEKGHI------------------------- 119 (201)
T ss_dssp HHHTTCHHHHHHHH--------------HHSCCCTTCCCTTSCCSHHHHHHTTCH-------------------------
T ss_pred HHHcCCHHHHHHHH--------------hccCcccccccCCCCcHHHHHHHcCCH-------------------------
Confidence 99999999999885 355656688999999999999999965
Q ss_pred HHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCC-----HHHHHHHHHhCCCcccccccccchHHHhhcC
Q 043183 192 VQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGN-----VGFLLILTREYPNLHISYRRFESSGAHLQTR 266 (564)
Q Consensus 192 v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~-----~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G 266 (564)
++++.|++. .+.+++.+|..|+||||+|+..|+ .+++++|+++++++.... .+|
T Consensus 120 -------~~v~~Ll~~----g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~----------~~g 178 (201)
T 3hra_A 120 -------DNVKLLLED----GREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKD----------NSG 178 (201)
T ss_dssp -------HHHHHHHHH----CCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCC----------TTS
T ss_pred -------HHHHHHHHc----CCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccC----------CCC
Confidence 566666543 445788889999999999999998 999999999999984443 899
Q ss_pred CchHHHHHhcCCCCccccc
Q 043183 267 NNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 267 ~TpLhlAa~~~~~~~~~~l 285 (564)
+||||+|++.|+.+++++|
T Consensus 179 ~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 179 RTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp CCHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHcCCHhHHHHH
Confidence 9999999999998887765
No 45
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=1.2e-28 Score=242.41 Aligned_cols=205 Identities=16% Similarity=0.135 Sum_probs=158.6
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHH----hCcccc--ccccCCCCChHHHHHH---hcCCHHHHHHHHHcCCc------
Q 043183 1 LTRSRRLQTYRAALNGDWAVAKSIYD----VYEGEI--GIAIAKRGDTALRIAA---AGKYIEFLKELVKIMEA------ 65 (564)
Q Consensus 1 l~~~g~t~Lh~Aa~~G~~~~v~~Ll~----~~~~~l--~~~~~~~g~TpLh~Aa---~~g~~~iv~~Ll~~~~~------ 65 (564)
++..+.|+||.||+.|+.+.++.|++ .+.... ....+..|.||||+|+ +.|+.++|++|++.+..
T Consensus 1 ~~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 1 MKVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence 35678999999999999997777766 554421 1123478999999999 77999999999998421
Q ss_pred ---ccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccC--------------CCCCcHHHHHHHcCCCchHHH
Q 043183 66 ---EDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRD--------------HNQTLPIDVAASLGHKDMPIC 123 (564)
Q Consensus 66 ---~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d--------------~~G~TpLh~Aa~~g~~~iv~~ 123 (564)
...+..|..|.||||+|+ ..| +.|++.+.+ ++.+| ..|.||||+|+..|+.+++++
T Consensus 81 ~~~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 158 (260)
T 3jxi_A 81 FINSPFRDVYYRGQTALHIAI-ERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158 (260)
T ss_dssp HHTCCBCCSSEESBCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred hhcccccccccCCCCHHHHHH-HcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 235666779999999999 999 888888765 45566 579999999999999999999
Q ss_pred HHHcccCCHHHHHHHHHc--CCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHH
Q 043183 124 MVSMNMLLPDVALQLCRD--RPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLV 201 (564)
Q Consensus 124 Ll~~~~~~~~i~~~Ll~~--~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv 201 (564)
|+ +. .+..++.+|.+|+||||+|+..++. +.+..+ ...+++
T Consensus 159 Ll--------------~~~~~ga~~~~~d~~g~TpLh~A~~~~~~----------------------~~~~~~-~~~~~v 201 (260)
T 3jxi_A 159 LT--------------ENGHKQADLRRQDSRGNTVLHALVAIADN----------------------TRENTK-FVTKMY 201 (260)
T ss_dssp HH--------------HCSSCCCCTTCCCTTSCCHHHHHHHHCCS----------------------SHHHHH-HHHHHH
T ss_pred HH--------------hccccCCCCcccCCCCCcHHHHHHHhccC----------------------chhHHH-HHHHHH
Confidence 85 32 4455588999999999999987753 111111 112566
Q ss_pred HHHHHhhccCChhhH-------hhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183 202 ERLCGKVALLSDSEI-------SRLISKPGALIFDAAKQGNVGFLLILTREYPNL 249 (564)
Q Consensus 202 ~~l~~~~l~~~~~~~-------~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~ 249 (564)
+.|++. +.++ +.+|..|+||||+|++.|+.+++++|++++++.
T Consensus 202 ~~Ll~~-----ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 202 DLLLIK-----CAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHH-----HHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHh-----CcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCc
Confidence 665543 3445 679999999999999999999999999998764
No 46
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.95 E-value=2.4e-28 Score=244.20 Aligned_cols=200 Identities=12% Similarity=0.015 Sum_probs=163.7
Q ss_pred HHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----
Q 043183 13 ALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG----- 87 (564)
Q Consensus 13 a~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G----- 87 (564)
+...+.+.+..++.... + ...|.+|.||||+|+..|+.++|++|++. +.+++.+ +|.||||+|+ ..|
T Consensus 7 i~~~~~~~v~~lL~~~~--~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~--~g~t~L~~A~-~~g~~~~v 78 (285)
T 3kea_A 7 INTWKSKQLKSFLSSKD--T-FKADVHGHSASYYAIADNNVRLVCTLLNA--GALKNLL--ENEFPLHQAA-TLEDTKIV 78 (285)
T ss_dssp GGGCCHHHHHHHHHSTT--T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TGGGSCC--TTCCHHHHHT-TSSSCHHH
T ss_pred HHhcCHHHHHHHHHhCC--C-CccCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCC--CCCCHHHHHH-HcCCHHHH
Confidence 45567777777776542 3 44689999999999999999999999998 5566666 4999999999 999
Q ss_pred HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCC-CcHHHHHHhCCCC
Q 043183 88 RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDC-ETPLHALARKNLT 166 (564)
Q Consensus 88 ~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G-~TpLh~Aa~~g~~ 166 (564)
+.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++ .+.+ ++.+|..| .||||+|+..|+.
T Consensus 79 ~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--------------~ga~-~~~~~~~g~~t~L~~A~~~~~~ 142 (285)
T 3kea_A 79 KILLFSGLD-DSQFDDKGNTALYYAVDSGNMQTVKLFVK--------------KNWR-LMFYGKTGWKTSFYHAVMLNDV 142 (285)
T ss_dssp HHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------HCGG-GGGCSSSGGGSHHHHHHHTTCH
T ss_pred HHHHHCCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHh--------------cCCC-CCccCCCCCCCHHHHHHHcCCH
Confidence 888888765 57789999999999999999999999864 5444 47889999 8999999999964
Q ss_pred CcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhc-CCchHHHHHHHcCCHHHHHHHHHh
Q 043183 167 SSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLIS-KPGALIFDAAKQGNVGFLLILTRE 245 (564)
Q Consensus 167 ~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~-~G~TpLh~Aa~~g~~~iv~~LL~~ 245 (564)
++++.|++. .. +. .|. .|.||||+|+..|+.+++++|+++
T Consensus 143 --------------------------------~~v~~Ll~~----g~-~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 143 --------------------------------SIVSYFLSE----IP-ST--FDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp --------------------------------HHHHHHHTT----SC-TT--CCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --------------------------------HHHHHHHhC----CC-cc--ccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 667766543 22 22 233 789999999999999999999999
Q ss_pred CCCcccccccccchHHHhhcCCch-HHHHHhcCCCCccccc
Q 043183 246 YPNLHISYRRFESSGAHLQTRNNI-LHLAAMLPPQDRLNIV 285 (564)
Q Consensus 246 ~~~~~~~~~r~~~i~n~~~~G~Tp-LhlAa~~~~~~~~~~l 285 (564)
|+++.... ..|+|| ||+|+..++.+++++|
T Consensus 184 gad~n~~~----------~~g~t~~L~~A~~~~~~~~v~~L 214 (285)
T 3kea_A 184 MTSTNTNN----------SLLFIPDIKLAIDNKDIEMLQAL 214 (285)
T ss_dssp HHHTCTTC----------CCBCCTTHHHHHHHTCHHHHHHH
T ss_pred CCCCCccc----------CCCCChHHHHHHHcCCHHHHHHH
Confidence 98874333 789998 9999999999988877
No 47
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.95 E-value=1.1e-27 Score=244.83 Aligned_cols=203 Identities=11% Similarity=0.050 Sum_probs=152.0
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCC-CCCcHHHHHHHhch-----HHHHhcCccc-------------
Q 043183 37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNK-HGGTALSMLLHLEG-----RVMMKHNRSI------------- 97 (564)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~-~G~TpLH~Aa~~~G-----~~Ll~~~~~~------------- 97 (564)
+.+|.||||.||+.|+.++|++||+. +.+++.++. .|.||||+|+ ..| +.|++++.+.
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~--Gadvn~~~~~~g~TpLh~A~-~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAV-QMSREDIVELLLRHGADPVLRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHH-HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcCHHHHHH-HcCCHHHHHHHHHcCCchhhhccCCCchhHH
Confidence 34578999999999999999999998 677887775 5999999999 999 7888775432
Q ss_pred -------------------ccccCCCCCcHHHHHHHcCCCchHHHHHH-----------------------------ccc
Q 043183 98 -------------------AMVRDHNQTLPIDVAASLGHKDMPICMVS-----------------------------MNM 129 (564)
Q Consensus 98 -------------------~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~-----------------------------~~~ 129 (564)
++.+|..|.||||+|+..|+.+++++|++ +..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~ 178 (337)
T 4g8k_A 99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178 (337)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred HHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence 34567788888888888888888888876 223
Q ss_pred CCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhc
Q 043183 130 LLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVA 209 (564)
Q Consensus 130 ~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l 209 (564)
++.++++.||++.+..++.+|..|.||||.++..+.. ....++++.|++
T Consensus 179 g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~----------------------------~~~~~i~~lLl~--- 227 (337)
T 4g8k_A 179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD----------------------------SDVEAITHLLLD--- 227 (337)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCT----------------------------TTHHHHHHHHHH---
T ss_pred CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCc----------------------------ccHHHHHHHHHH---
Confidence 4555566666554444455555666666555544322 011234554443
Q ss_pred cCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHh-CCCcccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 210 LLSDSEISRLISKPGALIFDAAKQGNVGFLLILTRE-YPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 210 ~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~-~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
.+.+++.+|..|+||||+|+..|+.++++.|++. +.++.... .+|+||||+|++.|+.+++++|
T Consensus 228 --~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d----------~~G~TpL~~A~~~g~~~iv~~L 292 (337)
T 4g8k_A 228 --HGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD----------SDGKTALLLAVELKLKKIAELL 292 (337)
T ss_dssp --TTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBC----------TTSCBHHHHHHHTTCHHHHHHH
T ss_pred --CCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcC----------CCCCCHHHHHHHcCCHHHHHHH
Confidence 4567888999999999999999999999999975 55653332 8999999999999999988876
No 48
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=1.5e-27 Score=219.18 Aligned_cols=152 Identities=21% Similarity=0.288 Sum_probs=108.4
Q ss_pred hHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcC
Q 043183 42 TALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLG 116 (564)
Q Consensus 42 TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g 116 (564)
++|+.||+.|+.++|+.|++. +.+++.+|..|.||||+|+ ..| +.+++.+.+ ++.+|.+|+||||+|+..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~-~~~~~~~~~~ll~~gad-~~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAA-ENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHH-HcCCHHHHHHHHhcccc-hhhhccCCCCHHHHHHHcC
Confidence 356666666666666666665 4556666666666666666 565 555555443 4566777777777777788
Q ss_pred CCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHh
Q 043183 117 HKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQ 196 (564)
Q Consensus 117 ~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~ 196 (564)
+.+++++|++ .+.+ ++.+|.+|+||||+|++.|+.
T Consensus 82 ~~~~v~~Ll~--------------~gad-vn~~d~~G~TpLh~A~~~g~~------------------------------ 116 (169)
T 4gpm_A 82 HKEVVKLLIS--------------KGAD-VNAKDSDGRTPLHHAAENGHK------------------------------ 116 (169)
T ss_dssp CHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHTTCH------------------------------
T ss_pred CHHHHHHHHH--------------CcCC-CCCCCCCCCCHHHHHHHcCCH------------------------------
Confidence 8888888753 4444 477889999999999998854
Q ss_pred HHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCc
Q 043183 197 ALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNL 249 (564)
Q Consensus 197 ~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~ 249 (564)
++++.|++ .+.+++.+|.+|+||||+|+++|+.+++++|+++|+++
T Consensus 117 --~~v~~Ll~-----~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 117 --EVVKLLIS-----KGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL 162 (169)
T ss_dssp --HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred --HHHHHHHH-----cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence 56666654 35677888999999999999999999999999999987
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=3.3e-28 Score=238.79 Aligned_cols=185 Identities=16% Similarity=0.074 Sum_probs=149.3
Q ss_pred CCChHHHHHHhcCCHH----HHHHHHHcCCcccccC----CCCCCCcHHHHHHHhc---h-----HHHHhcCccccc---
Q 043183 39 RGDTALRIAAAGKYIE----FLKELVKIMEAEDLAK----PNKHGGTALSMLLHLE---G-----RVMMKHNRSIAM--- 99 (564)
Q Consensus 39 ~g~TpLh~Aa~~g~~~----iv~~Ll~~~~~~~l~~----~d~~G~TpLH~Aa~~~---G-----~~Ll~~~~~~~~--- 99 (564)
.|+||||.||..|+.+ ++++|++. +.+++. +|..|.||||+|+ .. | +.|++.+.+...
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~--g~~i~~~~~~~d~~g~t~L~~A~-~~~~~g~~~~v~~Ll~~g~~~~~~~~ 77 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWN--SKYLTDSAYTEGSTGKTCLMKAV-LNLQDGVNACIMPLLQIDKDSGNPKP 77 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSBTTTTBCHHHHHH-HTCBTTBCTTHHHHHHHHHHTTCSSC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHc--CCCcccccccCCCCCCCHHHHHH-HccccchHHHHHHHHhcCCcccchhh
Confidence 3889999999999998 45566656 567777 8999999999999 98 8 888887654321
Q ss_pred -------ccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCC-------------CCcHHHH
Q 043183 100 -------VRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGD-------------CETPLHA 159 (564)
Q Consensus 100 -------~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~-------------G~TpLh~ 159 (564)
.+|..|.||||+|+..|+.+++++|++ .+.+. +.+|.. |.||||+
T Consensus 78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--------------~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~ 142 (256)
T 2etb_A 78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVE--------------NGADV-HLRACGRFFQKHQGTCFYFGELPLSL 142 (256)
T ss_dssp GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH--------------TTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHH
T ss_pred hcccccccccccCCCHHHHHHHcCCHHHHHHHHH--------------cCCCC-CcccccccccccccccccCCCCHHHH
Confidence 235679999999999999999999864 44443 556654 9999999
Q ss_pred HHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHH--cCCHH
Q 043183 160 LARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAK--QGNVG 237 (564)
Q Consensus 160 Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~--~g~~~ 237 (564)
|+..|+. ++++.|++. ...+.+++.+|.+|+||||+|+. .++.+
T Consensus 143 A~~~~~~--------------------------------~~v~~Ll~~--~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~ 188 (256)
T 2etb_A 143 AACTKQW--------------------------------DVVTYLLEN--PHQPASLEATDSLGNTVLHALVMIADNSPE 188 (256)
T ss_dssp HHHTTCH--------------------------------HHHHHHHHC--SSCCCCTTCCCTTSCCHHHHHHHHCCSCHH
T ss_pred HHHcCCH--------------------------------HHHHHHHhc--cccCCCcCccCCCCCCHHHHHHHcccCCch
Confidence 9999965 566666441 01567788999999999999999 88988
Q ss_pred -------HHHHHHHhCCCc-------ccccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 238 -------FLLILTREYPNL-------HISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 238 -------iv~~LL~~~~~~-------~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
++++|+++|+++ .... .+|+||||+|++.|+.+++++|
T Consensus 189 ~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d----------~~g~tpL~~A~~~g~~~~v~~L 240 (256)
T 2etb_A 189 NSALVIHMYDGLLQMGARLCPTVQLEEISN----------HQGLTPLKLAAKEGKIEIFRHI 240 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCGGGCCC----------TTSCCHHHHHHHTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCcccccccccccC----------CCCCCHHHHHHHhCCHHHHHHH
Confidence 999999998876 2222 8999999999999999988876
No 50
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.95 E-value=9e-27 Score=225.01 Aligned_cols=191 Identities=16% Similarity=0.070 Sum_probs=160.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
+..|.||||.|+..|+.++++.|++.++... ...+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 39 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~ 115 (240)
T 3eu9_A 39 DKENVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPLHWATRQGHLSMVVQLMKY--GADPSLIDGEGCSCIHL 115 (240)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTTTBCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHhCCHHHHHHHHHcCCcch-hhcCCcCCChhHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHH
Confidence 4579999999999999999999999987642 44466799999999999999999999998 66788899999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCC-CchHHHHHHcccCCHHHHHHHHHcCCccccccCC-CCC
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGH-KDMPICMVSMNMLLPDVALQLCRDRPKLATLRAG-DCE 154 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~-~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~-~G~ 154 (564)
|+ ..| +.|++.+.+ ++.+|..|.||||+|+..++ .+++++|+ +.+.+. +..+. .|.
T Consensus 116 A~-~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~L~--------------~~~~~~-~~~~~~~g~ 178 (240)
T 3eu9_A 116 AA-QFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLL--------------TFNVSV-NLGDKYHKN 178 (240)
T ss_dssp HH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTTHHHHH--------------HTTCCT-TCCCTTTCC
T ss_pred HH-HcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHHHHHHH--------------hcCCCc-chhhccCCC
Confidence 99 998 788887754 57889999999999997776 77888775 355454 55565 999
Q ss_pred cHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcC
Q 043183 155 TPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQG 234 (564)
Q Consensus 155 TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g 234 (564)
||||+|+..|+. ++++.|++. +.+++.+|..|.||||+|++.|
T Consensus 179 t~L~~A~~~~~~--------------------------------~~v~~Ll~~-----g~~~~~~~~~g~t~l~~A~~~~ 221 (240)
T 3eu9_A 179 TALHWAVLAGNT--------------------------------TVISLLLEA-----GANVDAQNIKGESALDLAKQRK 221 (240)
T ss_dssp CHHHHHHHHTCH--------------------------------HHHHHHHHH-----TCCTTCBCTTSCBHHHHHHHTT
T ss_pred cHHHHHHHcCCH--------------------------------HHHHHHHHc-----CCCCCCcCCCCCCHHHHHHHcC
Confidence 999999999965 677777653 4567788999999999999999
Q ss_pred CHHHHHHHHHhCCCc
Q 043183 235 NVGFLLILTREYPNL 249 (564)
Q Consensus 235 ~~~iv~~LL~~~~~~ 249 (564)
+.+++++|++++++.
T Consensus 222 ~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 222 NVWMINHLQEARQAK 236 (240)
T ss_dssp CHHHHHHHHHHC---
T ss_pred cHHHHHHHHHhhhcc
Confidence 999999999998764
No 51
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=2.6e-27 Score=235.61 Aligned_cols=189 Identities=13% Similarity=0.138 Sum_probs=160.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183 4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL 83 (564)
Q Consensus 4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa 83 (564)
...+++|.|+..|+.+.++.+++...+...+..|.+|.||||+||..|+.++|++|++.+ ..+++..|..|.||||+|+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g-~~~~~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSG-VCKVDKQNRAGYSPIMLTA 153 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTS-CCCTTCCCTTSCCHHHHGG
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCC-CCcCCCCCCCCCCHHHHHH
Confidence 356889999999999999999987655434557899999999999999999999999993 2378899999999999999
Q ss_pred Hhch----------HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCC
Q 043183 84 HLEG----------RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDC 153 (564)
Q Consensus 84 ~~~G----------~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G 153 (564)
..+ +.+++.+ ......|..|+||||+|+..|+.+++++|++ .+.+ ++.+|.+|
T Consensus 154 -~~~~~~~~~~~~v~~Ll~~g-~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~--------------~gad-~n~~d~~G 216 (276)
T 4hbd_A 154 -LATLKTQDDIETVLQLFRLG-NINAKASQAGQTALMLAVSHGRVDVVKALLA--------------CEAD-VNVQDDDG 216 (276)
T ss_dssp -GCCCCSHHHHHHHHHHHHHS-CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTS
T ss_pred -HHHhhhhhhHHHHHHHHHcC-CCccccCCCCCCHHHHHHHcCCHHHHHHHHh--------------CCCC-CCCCCCCC
Confidence 653 6677776 4457788899999999999999999999863 4444 48899999
Q ss_pred CcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHc
Q 043183 154 ETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQ 233 (564)
Q Consensus 154 ~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~ 233 (564)
+||||+|+..|+. ++++.| +...+.+++.+|..|+||||+|+..
T Consensus 217 ~TpLh~A~~~g~~--------------------------------~iv~~L----l~~~gad~~~~d~~g~TpL~~A~~~ 260 (276)
T 4hbd_A 217 STALMCACEHGHK--------------------------------EIAGLL----LAVPSCDISLTDRDGSTALMVALDA 260 (276)
T ss_dssp CCHHHHHHHHTCH--------------------------------HHHHHH----HTSTTCCTTCCCTTSCCHHHHHHHH
T ss_pred CCHHHHHHHCCCH--------------------------------HHHHHH----HhcCCCCCcCcCCCCCCHHHHHHHc
Confidence 9999999999964 566665 4446778899999999999999999
Q ss_pred CCHHHHHHHHHhC
Q 043183 234 GNVGFLLILTREY 246 (564)
Q Consensus 234 g~~~iv~~LL~~~ 246 (564)
|+.+++++|+++.
T Consensus 261 g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 261 GQSEIASMLYSRM 273 (276)
T ss_dssp TCHHHHHHHHHHC
T ss_pred CCHHHHHHHHhcc
Confidence 9999999999875
No 52
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.94 E-value=7.7e-28 Score=238.54 Aligned_cols=192 Identities=17% Similarity=0.111 Sum_probs=151.0
Q ss_pred ccCCCCChHHHHHHhcCCHHHHHHHHHcC--Cccccc----CCCCCCCcHHHHHHHhc---h-----HHHHhcCccc---
Q 043183 35 AIAKRGDTALRIAAAGKYIEFLKELVKIM--EAEDLA----KPNKHGGTALSMLLHLE---G-----RVMMKHNRSI--- 97 (564)
Q Consensus 35 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~--~~~~l~----~~d~~G~TpLH~Aa~~~---G-----~~Ll~~~~~~--- 97 (564)
..|..|.||||.||+.|+.++|+.|++.+ .+.+++ ..|..|.||||+|+ .. | +.|++.+.+.
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~-~~~~~g~~~~v~~Ll~~ga~~~~~ 86 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM-LNLHNGQNDTIALLLDVARKTDSL 86 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHH-HSCBTTBCHHHHHHHHHHHHTTCH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHH-HHHhcCChHHHHHHHHhhccccch
Confidence 35889999999999999999999999853 122333 45889999999999 86 6 8888876432
Q ss_pred ---cc----ccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCC--------------CCCcH
Q 043183 98 ---AM----VRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAG--------------DCETP 156 (564)
Q Consensus 98 ---~~----~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~--------------~G~Tp 156 (564)
++ ..|..|.||||+|+..|+.+++++|++ .+.+. +.+|. .|+||
T Consensus 87 ~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~--------------~ga~~-~~~~~~~~~~~~~~~~~~~~g~tp 151 (273)
T 2pnn_A 87 KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE--------------NGADV-QAAANGDFFKKTKGRPGFYFGELP 151 (273)
T ss_dssp HHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHH--------------TTCCT-TCCBCSGGGSSCSSSCCCCSCBSH
T ss_pred hHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHH--------------CCCCc-CccccccccccccccccccCCCCH
Confidence 12 256789999999999999999999864 44443 55555 79999
Q ss_pred HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCC-
Q 043183 157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGN- 235 (564)
Q Consensus 157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~- 235 (564)
||+|+..|+. ++++.|++.. ..+.+++.+|.+|+||||+|+..|+
T Consensus 152 L~~A~~~g~~--------------------------------~~v~~Ll~~~--~~gad~~~~d~~g~tpLh~A~~~~~~ 197 (273)
T 2pnn_A 152 LSLAACTNQL--------------------------------AIVKFLLQNS--WQPADISARDSVGNTVLHALVEVADN 197 (273)
T ss_dssp HHHHHHTTCH--------------------------------HHHHHHHHCS--SCCCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred HHHHHHcCCH--------------------------------HHHHHHHhcc--cCCCCceeeCCCCCcHHHHHHHccCc
Confidence 9999999965 5666664410 0566788999999999999999998
Q ss_pred --------HHHHHHHHHhCCCccc------ccccccchHHHhhcCCchHHHHHhcCCCCccccc
Q 043183 236 --------VGFLLILTREYPNLHI------SYRRFESSGAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 236 --------~~iv~~LL~~~~~~~~------~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
.+++++|+++++++.. ..+ .+|+||||+|++.|+.+++++|
T Consensus 198 ~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d---------~~g~TpL~~A~~~g~~~iv~~L 252 (273)
T 2pnn_A 198 TVDNTKFVTSMYNEILILGAKLHPTLKLEEITN---------RKGLTPLALAASSGKIGVLAYI 252 (273)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCC---------TTSCCHHHHHHHTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhhhhcccccccccccC---------CCCCCHHHHHHHhChHHHHHHH
Confidence 8999999999887631 111 8999999999999999988876
No 53
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.93 E-value=1.1e-25 Score=206.90 Aligned_cols=139 Identities=22% Similarity=0.278 Sum_probs=124.6
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhc
Q 043183 7 LQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLE 86 (564)
Q Consensus 7 t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~ 86 (564)
++|+.||+.|+.++|+.|++.+.+ + ...|.+|.||||+|+..++.++++.|++. +.+++.+|..|.||||+|+ ..
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gad-v-n~~d~~g~t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A~-~~ 80 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGAD-V-NASDSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAA-EN 80 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-HT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCC-C-CCcCCCCCCHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHHH-Hc
Confidence 579999999999999999999876 3 45689999999999999999999999998 6788999999999999999 99
Q ss_pred h-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHH
Q 043183 87 G-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALA 161 (564)
Q Consensus 87 G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa 161 (564)
| +.|++.+.+ ++.+|.+|+||||+|+..|+.+++++|++ .+.+ ++.+|.+|+||||+|+
T Consensus 81 g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~--------------~gad-~~~~d~~G~TpL~~A~ 144 (169)
T 4gpm_A 81 GHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLIS--------------KGAD-VNTSDSDGRTPLDLAR 144 (169)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-ccccCCCCCCHHHHHH
Confidence 9 888888765 58889999999999999999999999863 5444 4789999999999999
Q ss_pred hCCCC
Q 043183 162 RKNLT 166 (564)
Q Consensus 162 ~~g~~ 166 (564)
+.|+.
T Consensus 145 ~~g~~ 149 (169)
T 4gpm_A 145 EHGNE 149 (169)
T ss_dssp HTTCH
T ss_pred HcCCH
Confidence 99964
No 54
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.93 E-value=7.3e-27 Score=238.18 Aligned_cols=232 Identities=12% Similarity=0.020 Sum_probs=160.7
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccc-----cc----------cCCCCChHHHHHHhcCCHHHHHHHHHcCCcc
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIG-----IA----------IAKRGDTALRIAAAGKYIEFLKELVKIMEAE 66 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~-----~~----------~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~ 66 (564)
+..|.|+++ |+.++++.|++++.+.-. .. ......+.+|+|+..+..++++.|++. +.
T Consensus 49 ~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~--g~ 121 (327)
T 1sw6_A 49 LPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNT--QL 121 (327)
T ss_dssp BCCCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTS--CC
T ss_pred CCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhc--CC
Confidence 446788877 999999999998632100 00 011122346889988889999999987 67
Q ss_pred cccC-CCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCC---CchHHHHHHcccCCHHHHHH
Q 043183 67 DLAK-PNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGH---KDMPICMVSMNMLLPDVALQ 137 (564)
Q Consensus 67 ~l~~-~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~---~~iv~~Ll~~~~~~~~i~~~ 137 (564)
+++. +|..|.||||+|| ..| +.|++.+.+ ++.+|.+|+||||+|+..|+ .++++.|++
T Consensus 122 dvn~~~d~~g~TpLh~Aa-~~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~----------- 188 (327)
T 1sw6_A 122 NLNIPVDEHGNTPLHWLT-SIANLELVKHLVKHGSN-RLYGDNMGESCLVKAVKSVNNYDSGTFEALLD----------- 188 (327)
T ss_dssp CSCSCCSTTCCCHHHHHH-HTTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHH-----------
T ss_pred CcccccCCCCCcHHHHHH-HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhcccccHHHHHHHHH-----------
Confidence 8888 8999999999999 999 888998855 57899999999999999998 788887754
Q ss_pred HHHcCCccccccCCCCCcHHHHHHh----CCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhh-----
Q 043183 138 LCRDRPKLATLRAGDCETPLHALAR----KNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKV----- 208 (564)
Q Consensus 138 Ll~~~~~~~~~~d~~G~TpLh~Aa~----~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~----- 208 (564)
......+.+|.+|+||||+|+. .|+ . ++++.+++..
T Consensus 189 ---~~~~~~~~~d~~g~tpLh~A~~~~~~~g~------------------------~--------~~v~~Ll~~~~~~~~ 233 (327)
T 1sw6_A 189 ---YLYPCLILEDSMNRTILHHIIITSGMTGC------------------------S--------AAAKYYLDILMGWIV 233 (327)
T ss_dssp ---HHGGGGGEECTTCCCHHHHHHHHHTSTTC------------------------H--------HHHHHHHHHHHHHHH
T ss_pred ---hhhccccCCCCCCCCHHHHHHHHcccccc------------------------H--------HHHHHHHHHHHHHHh
Confidence 3323457899999999999998 553 2 3344443321
Q ss_pred ----------ccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCC
Q 043183 209 ----------ALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPP 278 (564)
Q Consensus 209 ----------l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~ 278 (564)
+...+.+++.+|..|.||||.|+. +++|++++.+... .+|+||||+|++.|+
T Consensus 234 ~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~~~n~~d------------~~G~TpLh~A~~~g~ 295 (327)
T 1sw6_A 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIANMLNAQD------------SNGDTCLNIAARLGN 295 (327)
T ss_dssp HGGGCCEEEC----------------CHHHHHCS------HHHHHHHTTTCCC------------TTSCCHHHHHHHHCC
T ss_pred cccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHhCCCCCC------------CCCCCHHHHHHHcCC
Confidence 112367888999999999999996 8999998544332 899999999999999
Q ss_pred CCccccccchHHHhhHHHhHhhcccchHHhhccCCCCchhhh
Q 043183 279 QDRLNIVSGAALQMQREFCEKVVQRGFAEAKNREGLTPRALF 320 (564)
Q Consensus 279 ~~~~~~l~g~~l~~q~elv~~~~~~~~~~~~n~~g~t~~dl~ 320 (564)
.+++++| ++ .....+.+|.+|+||.++.
T Consensus 296 ~~~v~~L-----------l~---~Gad~~~~d~~G~TpL~~A 323 (327)
T 1sw6_A 296 ISIVDAL-----------LD---YGADPFIANKSGLRPVDFG 323 (327)
T ss_dssp HHHHHHH-----------HH---TTCCTTCCCTTSCCGGGGT
T ss_pred HHHHHHH-----------HH---cCCCCcccCCCCCCHHHHH
Confidence 9888876 11 2334667889999999875
No 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.93 E-value=9e-27 Score=228.91 Aligned_cols=193 Identities=16% Similarity=0.085 Sum_probs=147.2
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHH----cCCcccccCCC----CCCCcHHHHHHHhc---h-----HHHHhcCccc---
Q 043183 37 AKRGDTALRIAAAGKYIEFLKELVK----IMEAEDLAKPN----KHGGTALSMLLHLE---G-----RVMMKHNRSI--- 97 (564)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~~~l~~~d----~~G~TpLH~Aa~~~---G-----~~Ll~~~~~~--- 97 (564)
+..|+||||.||+.|+.+.++.|++ . +.+++..+ ..|.||||+|+ .. | +.|++.+.+.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~-~~~~~g~~~~v~~Ll~~g~~~~~~ 78 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEFREPSTGKTCLPKAL-LNLSAGRNDTIPILLDIAEKTGNM 78 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHH-TSCBTTBCTHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhhhccCCCCcHHHHHH-HHhhcCCHHHHHHHHHhcccccch
Confidence 5678999999999999997666665 5 44555444 77999999998 64 5 7888775321
Q ss_pred -------ccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccC--------------CCCCcH
Q 043183 98 -------AMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRA--------------GDCETP 156 (564)
Q Consensus 98 -------~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d--------------~~G~Tp 156 (564)
....|..|+||||+|+..|+.+++++|++ .+.+. +.+| ..|+||
T Consensus 79 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--------------~ga~~-~~~~~~~~~~~~~~~~~~~~g~tp 143 (260)
T 3jxi_A 79 REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVE--------------KGADV-HAQARGRFFQPKDEGGYFYFGELP 143 (260)
T ss_dssp HHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHH--------------TTCCT-TCCCEECCCSSSCCCCSCCSCSSH
T ss_pred HhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHh--------------CCCCc-CccccccccCcccccccccCCCCH
Confidence 23455689999999999999999999864 44443 5555 689999
Q ss_pred HHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCC-
Q 043183 157 LHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGN- 235 (564)
Q Consensus 157 Lh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~- 235 (564)
||+|+..|+. ++++.|++. ...+.+++.+|..|+||||+|+..|+
T Consensus 144 L~~A~~~g~~--------------------------------~~v~~Ll~~--~~~ga~~~~~d~~g~TpLh~A~~~~~~ 189 (260)
T 3jxi_A 144 LSLAACTNQP--------------------------------HIVHYLTEN--GHKQADLRRQDSRGNTVLHALVAIADN 189 (260)
T ss_dssp HHHHHHTTCH--------------------------------HHHHHHHHC--SSCCCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred HHHHHHcCCH--------------------------------HHHHHHHhc--cccCCCCcccCCCCCcHHHHHHHhccC
Confidence 9999999964 566666441 01567788999999999999999888
Q ss_pred --------HHHHHHHHHhCCCcccccccccchHHHh-hcCCchHHHHHhcCCCCccccc
Q 043183 236 --------VGFLLILTREYPNLHISYRRFESSGAHL-QTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 236 --------~~iv~~LL~~~~~~~~~~~r~~~i~n~~-~~G~TpLhlAa~~~~~~~~~~l 285 (564)
.+++++|+++|+++.... .+.+.. .+|+||||+|++.|+.+++++|
T Consensus 190 ~~~~~~~~~~~v~~Ll~~ga~~~~~~----~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 244 (260)
T 3jxi_A 190 TRENTKFVTKMYDLLLIKCAKLFPDT----NLEALLNNDGLSPLMMAAKTGKIGIFQHI 244 (260)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCTTC----CGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCccccccc----chhhcccCCCCCHHHHHHHcCCHHHHHHH
Confidence 799999999988762100 000011 8999999999999999988876
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=1.2e-26 Score=230.85 Aligned_cols=185 Identities=9% Similarity=0.091 Sum_probs=156.0
Q ss_pred CCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHH
Q 043183 38 KRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVA 112 (564)
Q Consensus 38 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~A 112 (564)
..+.+++|.|+..|+.+.++.+++......++.+|..|.||||+|+ ..| +.|++.++..++..|..|.||||+|
T Consensus 74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~-~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSV-SHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHG
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHH-HCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHH
Confidence 3457889999999999999999987544458899999999999999 999 8899998867889999999999999
Q ss_pred H-----HcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcC
Q 043183 113 A-----SLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGA 187 (564)
Q Consensus 113 a-----~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~ 187 (564)
+ ..++.+++++|+ +.+ ......|..|+||||+|+..|+.
T Consensus 153 ~~~~~~~~~~~~~v~~Ll--------------~~g-~~~~~~~~~g~tpLh~A~~~g~~--------------------- 196 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLF--------------RLG-NINAKASQAGQTALMLAVSHGRV--------------------- 196 (276)
T ss_dssp GGCCCCSHHHHHHHHHHH--------------HHS-CTTCCCTTTCCCHHHHHHHTTCH---------------------
T ss_pred HHHHhhhhhhHHHHHHHH--------------HcC-CCccccCCCCCCHHHHHHHcCCH---------------------
Confidence 9 445666666664 454 44467888999999999999965
Q ss_pred CcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHH-hCCCcccccccccchHHHhhcC
Q 043183 188 EDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTR-EYPNLHISYRRFESSGAHLQTR 266 (564)
Q Consensus 188 ~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~-~~~~~~~~~~r~~~i~n~~~~G 266 (564)
++++.|++ .+.+++.+|.+|+||||+|+..|+.+++++|++ .++++.... .+|
T Consensus 197 -----------~~v~~Ll~-----~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d----------~~g 250 (276)
T 4hbd_A 197 -----------DVVKALLA-----CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTD----------RDG 250 (276)
T ss_dssp -----------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCC----------TTS
T ss_pred -----------HHHHHHHh-----CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcC----------CCC
Confidence 66776655 356788899999999999999999999999999 788874433 899
Q ss_pred CchHHHHHhcCCCCccccc
Q 043183 267 NNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 267 ~TpLhlAa~~~~~~~~~~l 285 (564)
+||||+|++.|+.+++++|
T Consensus 251 ~TpL~~A~~~g~~~iv~~L 269 (276)
T 4hbd_A 251 STALMVALDAGQSEIASML 269 (276)
T ss_dssp CCHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHH
Confidence 9999999999999888765
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.92 E-value=2.1e-25 Score=208.86 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=136.1
Q ss_pred cccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcH
Q 043183 34 IAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLP 108 (564)
Q Consensus 34 ~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~Tp 108 (564)
...|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+ ..| +.|++.+.+ ++.+|..|.||
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~ 104 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAV-KNNRLGIAEKLLSKGSN-VNTKDFSGKTP 104 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHHTCC-TTCCCTTSCCH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHH-HcCCHHHHHHHHHCCCC-CCCCCCCCCcH
Confidence 44688999999999999999999999998 6678889999999999999 998 788888755 57789999999
Q ss_pred HHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCC
Q 043183 109 IDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAE 188 (564)
Q Consensus 109 Lh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~ 188 (564)
||+|+..|+.+++++|++ .+.+ ++.+|.+|.||||+|+..|+.
T Consensus 105 L~~A~~~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~~~---------------------- 147 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLE--------------HGAN-VNDRNLEGETPLIVASKYGRS---------------------- 147 (192)
T ss_dssp HHHHHHHTCHHHHHHHHH--------------TTCC-SSCCCTTCCCHHHHHHHHTCH----------------------
T ss_pred HHHHHHcCCHHHHHHHHH--------------CCCC-CCCCCCCCCCHHHHHHHcCCH----------------------
Confidence 999999999999998863 4444 478899999999999999964
Q ss_pred cHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhC
Q 043183 189 DVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREY 246 (564)
Q Consensus 189 h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~ 246 (564)
++++.|++ .+.+++.+|..|.||||+|+..|+.+++++|++.+
T Consensus 148 ----------~~v~~Ll~-----~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 148 ----------EIVKKLLE-----LGADISARDLTGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp ----------HHHHHHHH-----TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----------HHHHHHHH-----CCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 66766654 35677888999999999999999999999999864
No 58
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.92 E-value=6.9e-25 Score=201.49 Aligned_cols=142 Identities=20% Similarity=0.144 Sum_probs=124.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHH
Q 043183 5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLH 84 (564)
Q Consensus 5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~ 84 (564)
+.||||.||..|+.+.++.|++.++..+ ...+..|.||||+|+..|+.++|++|++. +.+++.+|..|.||||+|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~- 77 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLV-NKPDERGFTPLIWASAFGEIETVRFLLEW--GADPHILAKERESALSLAS- 77 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGG-GCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHH-
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccc-cCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCchhhcccCCCHHHHHH-
Confidence 4689999999999999999999987755 45688999999999999999999999998 6678889999999999999
Q ss_pred hch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHH
Q 043183 85 LEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHA 159 (564)
Q Consensus 85 ~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~ 159 (564)
..| +.|++.+.+ ++.+|..|+||||+|+..|+.+++++|++ .+.+ .+.+|.+|.||||+
T Consensus 78 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~ga~-~~~~~~~g~t~l~~ 141 (172)
T 3v30_A 78 TGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLA--------------RGAD-LTTEADSGYTPMDL 141 (172)
T ss_dssp HTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHH
T ss_pred HCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-ccccCCCCCCHHHH
Confidence 999 788887755 57889999999999999999999999863 4444 47899999999999
Q ss_pred HHhCCCC
Q 043183 160 LARKNLT 166 (564)
Q Consensus 160 Aa~~g~~ 166 (564)
|+..|+.
T Consensus 142 A~~~~~~ 148 (172)
T 3v30_A 142 AVALGYR 148 (172)
T ss_dssp HHHHTCH
T ss_pred HHHhCcH
Confidence 9999964
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.92 E-value=5e-25 Score=202.46 Aligned_cols=158 Identities=18% Similarity=0.156 Sum_probs=134.6
Q ss_pred CChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHH
Q 043183 40 GDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAAS 114 (564)
Q Consensus 40 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~ 114 (564)
+.||||.|+..|+.++++.|++.+ +..++.+|..|.||||+|+ ..| +.|++.+.+ ++.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWAS-AFGEIETVRFLLEWGAD-PHILAKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHH-HTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHH
Confidence 468999999999999999999984 4458889999999999999 999 888888755 57889999999999999
Q ss_pred cCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHH
Q 043183 115 LGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQR 194 (564)
Q Consensus 115 ~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~ 194 (564)
.|+.+++++|++ .+.+ ++.+|.+|+||||+|+..|+.
T Consensus 79 ~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~~~---------------------------- 115 (172)
T 3v30_A 79 GGYTDIVGLLLE--------------RDVD-INIYDWNGGTPLLYAVRGNHV---------------------------- 115 (172)
T ss_dssp TTCHHHHHHHHT--------------TTCC-TTCCCTTSCCHHHHHHHTTCH----------------------------
T ss_pred CCCHHHHHHHHH--------------cCCC-CCCCCCCCCCHHHHHHHcCCH----------------------------
Confidence 999999999863 4433 478899999999999999964
Q ss_pred HhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccc
Q 043183 195 LQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHIS 252 (564)
Q Consensus 195 ~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~ 252 (564)
++++.|++ .+.+++.+|..|.||||+|+..|+.+++++|++++++....
T Consensus 116 ----~~v~~Ll~-----~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~ 164 (172)
T 3v30_A 116 ----KCVEALLA-----RGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQS 164 (172)
T ss_dssp ----HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred ----HHHHHHHH-----cCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcc
Confidence 66666655 35677889999999999999999999999999998876443
No 60
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.92 E-value=3.8e-25 Score=200.93 Aligned_cols=158 Identities=18% Similarity=0.133 Sum_probs=93.2
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHH
Q 043183 5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLH 84 (564)
Q Consensus 5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~ 84 (564)
..||||.|+..|+.++++.|++.+.+. ...|..|.||||+|+. |+.+++++|++. +.+++.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~-------------- 65 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNV--NAQNGFGRTALQVMKL-GNPEIARRLLLR--GANPDL-------------- 65 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCT--TCCCTTSCCHHHHCCS-SCHHHHHHHHHT--TCCTTC--------------
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCc--cccCccCccHHHHHHc-CcHHHHHHHHHc--CCCCCC--------------
Confidence 345555555555555555555544331 2234555555555555 555555555554 333444
Q ss_pred hchHHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCC
Q 043183 85 LEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKN 164 (564)
Q Consensus 85 ~~G~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g 164 (564)
+|..|.||||+|+..|+.+++++|++ .+.+ ++.+|.+|+||||+|+..|
T Consensus 66 ----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~ 114 (162)
T 1ihb_A 66 ----------------KDRTGFAVIHDAARAGFLDTLQTLLE--------------FQAD-VNIEDNEGNLPLHLAAKEG 114 (162)
T ss_dssp ----------------CCTTSCCHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHTT
T ss_pred ----------------CCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-CCCcCCCCCCHHHHHHHcC
Confidence 44455555555555566666666642 3333 3566777777777777776
Q ss_pred CCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHH
Q 043183 165 LTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTR 244 (564)
Q Consensus 165 ~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~ 244 (564)
+. ++++.|++. ....++.+|..|.||||+|+..|+.+++++|++
T Consensus 115 ~~--------------------------------~~v~~Ll~~----g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 158 (162)
T 1ihb_A 115 HL--------------------------------RVVEFLVKH----TASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158 (162)
T ss_dssp CH--------------------------------HHHHHHHHH----SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CH--------------------------------HHHHHHHHc----cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 43 455555432 222346677788889999999999999999998
Q ss_pred hCCC
Q 043183 245 EYPN 248 (564)
Q Consensus 245 ~~~~ 248 (564)
+|+|
T Consensus 159 ~GAd 162 (162)
T 1ihb_A 159 NGAG 162 (162)
T ss_dssp TC--
T ss_pred hCCC
Confidence 8865
No 61
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.92 E-value=7.1e-25 Score=200.39 Aligned_cols=160 Identities=19% Similarity=0.089 Sum_probs=104.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183 4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL 83 (564)
Q Consensus 4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa 83 (564)
+|.||||.||..|+.++++.|++.+.. + ...|..|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENV-I-NHTDEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCC-c-CCCCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHH
Confidence 467777777777777777777776544 2 33566777777777777777777777776 4445555555555555555
Q ss_pred HhchHHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhC
Q 043183 84 HLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARK 163 (564)
Q Consensus 84 ~~~G~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~ 163 (564)
..|+.+++++|++ .+.+. +.+|.+|.||||+|+..
T Consensus 78 ------------------------------~~~~~~~v~~Ll~--------------~g~~~-~~~~~~g~t~L~~A~~~ 112 (167)
T 3v31_A 78 ------------------------------SKGYTDIVKMLLD--------------CGVDV-NEYDWNGGTPLLYAVHG 112 (167)
T ss_dssp ------------------------------HHTCHHHHHHHHH--------------HTCCT-TCCCTTSCCHHHHHHHT
T ss_pred ------------------------------HcCCHHHHHHHHH--------------CCCCC-CcCCCCCCCHHHHHHHc
Confidence 4556666666642 33333 55667777777777777
Q ss_pred CCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHH
Q 043183 164 NLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILT 243 (564)
Q Consensus 164 g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL 243 (564)
|+. ++++.|++ .+.+++.+|..|.||||+|+..|+.+++++|+
T Consensus 113 ~~~--------------------------------~~v~~Ll~-----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 113 NHV--------------------------------KCVKMLLE-----SGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp TCH--------------------------------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred CCH--------------------------------HHHHHHHH-----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 643 45555543 34455667777888888888888888888888
Q ss_pred HhCCCc
Q 043183 244 REYPNL 249 (564)
Q Consensus 244 ~~~~~~ 249 (564)
+++++.
T Consensus 156 ~~~~~~ 161 (167)
T 3v31_A 156 SHLLKL 161 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776554
No 62
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.91 E-value=5.1e-24 Score=194.66 Aligned_cols=119 Identities=18% Similarity=0.267 Sum_probs=103.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|..|+||||.|+..|+.++++.|++.+.+. ...+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 33 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 108 (167)
T 3v31_A 33 DEEGFTPLMWAAAHGQIAVVEFLLQNGADP--QLLGKGRESALSLACSKGYTDIVKMLLDC--GVDVNEYDWNGGTPLLY 108 (167)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHCCCHHHHHHHHHcCCCC--CCcCCCCCcHHHHHHHcCCHHHHHHHHHC--CCCCCcCCCCCCCHHHH
Confidence 567999999999999999999999987653 44688999999999999999999999998 66788899999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS 126 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~ 126 (564)
|+ ..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++
T Consensus 109 A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (167)
T 3v31_A 109 AV-HGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGYRSVQQVIES 156 (167)
T ss_dssp HH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HH-HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 99 888 777777654 57788889999999999999998888864
No 63
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.6e-26 Score=223.30 Aligned_cols=196 Identities=15% Similarity=0.105 Sum_probs=147.4
Q ss_pred HHHHHHhCccc-cccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcC
Q 043183 21 AKSIYDVYEGE-IGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHN 94 (564)
Q Consensus 21 v~~Ll~~~~~~-l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~ 94 (564)
++.|++++... .....+.+|.||||+|+..|+.++|++|++. +.+++.+|..|.||||+|+ ..| +.|++.+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~-~~g~~~~v~~Ll~~g 77 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAI-CGANYSIVDFLITAG 77 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHCC
Confidence 35667665432 1234567788999999999999999999998 5678889999999999999 898 8888887
Q ss_pred cccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCcccccc-CCCCCcHHHHH--HhCCCCCcccc
Q 043183 95 RSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLR-AGDCETPLHAL--ARKNLTSSNFI 171 (564)
Q Consensus 95 ~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~-d~~G~TpLh~A--a~~g~~~~~f~ 171 (564)
.+ ++.+|..|+||||+|+..|+.+++++|++ .+.+. +.. |.+|+||||+| +..|+.
T Consensus 78 a~-~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~--------------~ga~~-~~~~~~~g~tpL~~A~a~~~~~~----- 136 (229)
T 2vge_A 78 AN-VNSPDSHGWTPLHCAASCNDTVICMALVQ--------------HGAAI-FATTLSDGATAFEKCDPYREGYA----- 136 (229)
T ss_dssp CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHT--------------TTCCT-TCCCSSTTCCTGGGCCTTSTTHH-----
T ss_pred CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCCc-ccccCCCCCCHHHHHHHHhcChH-----
Confidence 54 57889999999999999999999998853 55555 445 47999999999 777743
Q ss_pred cccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcc-
Q 043183 172 NQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLH- 250 (564)
Q Consensus 172 ~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~- 250 (564)
++++.|++ .+.+++.+|..|.||+|.++..+.. ++|++.++++.
T Consensus 137 ---------------------------~~v~~Ll~-----~ga~~~~~~~~~~~~l~~~~~~~~~---~~ll~~ga~~~~ 181 (229)
T 2vge_A 137 ---------------------------DCATYLAD-----VEQSMGLMNSGAVYALWDYSAEFGD---ELSFREGESVTV 181 (229)
T ss_dssp ---------------------------HHHHHHHH-----HHHHTTTSGGGEEEESSCBCCSSTT---BCCBCTTCEEEE
T ss_pred ---------------------------HHHHHHHH-----cCCCcccccCCchHHHHHHhhcccc---ccCccccccccc
Confidence 66666655 3567788889999999976665543 56778877741
Q ss_pred cccccccchHHHhhcCCchHHHHHhcCCCCcccc
Q 043183 251 ISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNI 284 (564)
Q Consensus 251 ~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~ 284 (564)
...+ .+|+||||+|++.|+.++++.
T Consensus 182 ~~~d---------~~G~TpL~~A~~~g~~~~v~~ 206 (229)
T 2vge_A 182 LRRD---------GPEETDWWWAALHGQEGYVPR 206 (229)
T ss_dssp EESS---------CTTCSSEEEEEETTEEEEEEG
T ss_pred cccC---------CCcccHHHHHHHcCCcceeeh
Confidence 1111 779999999999999988764
No 64
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.91 E-value=3.8e-24 Score=200.32 Aligned_cols=144 Identities=15% Similarity=0.128 Sum_probs=127.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|..|+||||.|+..|+.++++.|++.+.+. ...+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 32 DSYNRTPLMVACMLGMENAIDKLVENFDKL--EDKDIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp CTTCCCHHHHHHHHTCGGGHHHHHHHHCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHhcccc--ccccccCccHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHH
Confidence 567999999999999999999999987653 44688899999999999999999999998 56788999999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP 156 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp 156 (564)
|+ ..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++ .+.+ ++.+|.+|.||
T Consensus 108 A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~ga~-~~~~~~~g~t~ 170 (192)
T 2rfm_A 108 SI-IFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLE--------------LGAD-ISARDLTGLTA 170 (192)
T ss_dssp HH-HHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCBCTTSCBH
T ss_pred HH-HcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------CCCC-CCCcCCCCCCH
Confidence 99 888 788887755 57889999999999999999999999863 4444 47889999999
Q ss_pred HHHHHhCCCC
Q 043183 157 LHALARKNLT 166 (564)
Q Consensus 157 Lh~Aa~~g~~ 166 (564)
||+|+..|+.
T Consensus 171 l~~A~~~~~~ 180 (192)
T 2rfm_A 171 EASARIFGRQ 180 (192)
T ss_dssp HHHHHHTTCH
T ss_pred HHHHHHhCcH
Confidence 9999999964
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.91 E-value=3.7e-24 Score=196.28 Aligned_cols=153 Identities=20% Similarity=0.214 Sum_probs=102.4
Q ss_pred CCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHH
Q 043183 38 KRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVA 112 (564)
Q Consensus 38 ~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~A 112 (564)
..+.||||.||+.|+.++|++|++. +.+++.+|..|.||||+|+ ..| +.|++.+.+ ++..|..|.||||+|
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAA-FNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLA 87 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHH
Confidence 4455666666666666666666665 3455556666666666666 555 555555433 355566677777777
Q ss_pred HHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHH
Q 043183 113 ASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEV 192 (564)
Q Consensus 113 a~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v 192 (564)
+..|+.+++++|++ .+.+ .+.+|.+|+||||+|+..|+.
T Consensus 88 ~~~~~~~~~~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~~~-------------------------- 126 (169)
T 2y1l_E 88 ALFGHLEIVEVLLK--------------NGAD-VNANDMEGHTPLHLAAMFGHL-------------------------- 126 (169)
T ss_dssp HHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHTTCH--------------------------
T ss_pred HHcCCHHHHHHHHH--------------cCCC-CCCCCCCCCCHHHHHHHcCCH--------------------------
Confidence 77777778887753 3333 366788888888888888754
Q ss_pred HHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhC
Q 043183 193 QRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREY 246 (564)
Q Consensus 193 ~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~ 246 (564)
++++.|++ .+.+++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 127 ------~~v~~Ll~-----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 127 ------EIVEVLLK-----NGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp ------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred ------HHHHHHHH-----cCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 55666554 34556777888899999999999999999888754
No 66
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.91 E-value=6.2e-27 Score=226.29 Aligned_cols=189 Identities=15% Similarity=0.146 Sum_probs=155.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
+.++.||||.||..|+.++++.|++.+.+ + ...|..|.||||+||..|+.++|++|++. +.+++.+|..|.||||+
T Consensus 18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga~~n~~d~~g~tpLh~ 93 (229)
T 2vge_A 18 RLNPLVLLLDAALTGELEVVQQAVKEMND-P-SQPNEEGITALHNAICGANYSIVDFLITA--GANVNSPDSHGWTPLHC 93 (229)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHHSSC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred ccchhHHHHHHHHcCCHHHHHHHHhcCCC-C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence 34678999999999999999999998775 3 44688999999999999999999999998 67889999999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHH--HHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCC
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVA--ASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCE 154 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~A--a~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~ 154 (564)
|+ ..| +.|++.+.+.....|.+|+||||+| +..|+.+++++|++ .+.+ ++..|..|.
T Consensus 94 A~-~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~--------------~ga~-~~~~~~~~~ 157 (229)
T 2vge_A 94 AA-SCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLAD--------------VEQS-MGLMNSGAV 157 (229)
T ss_dssp HH-HTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHH--------------HHHH-TTTSGGGEE
T ss_pred HH-HcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHH--------------cCCC-cccccCCch
Confidence 99 999 8888888765444457999999999 99999999999864 3333 366788999
Q ss_pred cHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhh--HhhhhcCCchHHHHHHH
Q 043183 155 TPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSE--ISRLISKPGALIFDAAK 232 (564)
Q Consensus 155 TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~--~~~~d~~G~TpLh~Aa~ 232 (564)
||+|.++..... + ++...+.+ ++.+|..|+||||+|+.
T Consensus 158 ~~l~~~~~~~~~---------------------------------------~-~ll~~ga~~~~~~~d~~G~TpL~~A~~ 197 (229)
T 2vge_A 158 YALWDYSAEFGD---------------------------------------E-LSFREGESVTVLRRDGPEETDWWWAAL 197 (229)
T ss_dssp EESSCBCCSSTT---------------------------------------B-CCBCTTCEEEEEESSCTTCSSEEEEEE
T ss_pred HHHHHHhhcccc---------------------------------------c-cCccccccccccccCCCcccHHHHHHH
Confidence 999976665432 0 12233444 67889999999999999
Q ss_pred cCCHHHHHH-HHHhCCCcc
Q 043183 233 QGNVGFLLI-LTREYPNLH 250 (564)
Q Consensus 233 ~g~~~iv~~-LL~~~~~~~ 250 (564)
+|+.++|+. +++..|.+.
T Consensus 198 ~g~~~~v~~~~l~~~p~~~ 216 (229)
T 2vge_A 198 HGQEGYVPRNYFGLFPRVK 216 (229)
T ss_dssp TTEEEEEEGGGEESSCCCC
T ss_pred cCCcceeehhhhhhCCCCC
Confidence 999999976 456667663
No 67
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.91 E-value=4.6e-24 Score=193.73 Aligned_cols=119 Identities=19% Similarity=0.240 Sum_probs=107.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|..|+||||.|+. |+.++++.|++.+.+. ...+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 35 ~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 109 (162)
T 1ihb_A 35 NGFGRTALQVMKL-GNPEIARRLLLRGANP--DLKDRTGFAVIHDAARAGFLDTLQTLLEF--QADVNIEDNEGNLPLHL 109 (162)
T ss_dssp CTTSCCHHHHCCS-SCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred CccCccHHHHHHc-CcHHHHHHHHHcCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHH
Confidence 5679999999999 9999999999987653 44688999999999999999999999998 57888999999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS 126 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~ 126 (564)
|+ ..| +.|++.+++..+.+|..|.||||+|+..|+.+++++|++
T Consensus 110 A~-~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 158 (162)
T 1ihb_A 110 AA-KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158 (162)
T ss_dssp HH-HTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HH-HcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 99 888 888888887678889999999999999999999999864
No 68
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.91 E-value=4.5e-24 Score=192.60 Aligned_cols=154 Identities=18% Similarity=0.144 Sum_probs=92.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHH
Q 043183 5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLH 84 (564)
Q Consensus 5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~ 84 (564)
+.||||.|+..|+.+.++.|++..+... ...|..|.||||+ +..|+.+++++|++. +.+++.+|..|.||||+|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~- 76 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHP-DALNRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDAA- 76 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCT-TCCCTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCc-cccCCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHH-
Confidence 4567777777777777777777632222 3346677777777 777777777777766 4455555555555555555
Q ss_pred hchHHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCC
Q 043183 85 LEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKN 164 (564)
Q Consensus 85 ~~G~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g 164 (564)
..|+.+++++|++ .+.+ ++.+|.+|+||||+|+..|
T Consensus 77 -----------------------------~~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~ 112 (156)
T 1bd8_A 77 -----------------------------RTGFLDTLKVLVE--------------HGAD-VNVPDGTGALPIHLAVQEG 112 (156)
T ss_dssp -----------------------------HTTCHHHHHHHHH--------------TTCC-SCCCCTTSCCHHHHHHHHT
T ss_pred -----------------------------HcCcHHHHHHHHH--------------cCCC-CCCcCCCCCcHHHHHHHhC
Confidence 4455555555532 3322 2455666666666666665
Q ss_pred CCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHH
Q 043183 165 LTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTR 244 (564)
Q Consensus 165 ~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~ 244 (564)
+. ++++.|++ . .+++.+|..|.||||+|+..|+.+++++|++
T Consensus 113 ~~--------------------------------~~v~~Ll~----~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 113 HT--------------------------------AVVSFLAA----E--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp CH--------------------------------HHHHHHHT----T--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred hH--------------------------------HHHHHHHh----c--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 43 34444432 1 3455566667777777777777777777765
Q ss_pred h
Q 043183 245 E 245 (564)
Q Consensus 245 ~ 245 (564)
+
T Consensus 155 ~ 155 (156)
T 1bd8_A 155 H 155 (156)
T ss_dssp T
T ss_pred h
Confidence 3
No 69
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.90 E-value=9.4e-24 Score=190.53 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=103.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|..|.||||. |..|+.++++.|++.+.+. ...|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 33 ~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 107 (156)
T 1bd8_A 33 NRFGKTALQV-MMFGSTAIALELLKQGASP--NVQDTSGTSPVHDAARTGFLDTLKVLVEH--GADVNVPDGTGALPIHL 107 (156)
T ss_dssp CTTSCCHHHH-SCTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCHHHH
T ss_pred CCCCCcHHHH-HHcCCHHHHHHHHHCCCCC--CCcCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHH
Confidence 5679999999 9999999999999987653 44688999999999999999999999998 57788899999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS 126 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~ 126 (564)
|+ ..| +.|++. ..++.+|.+|.||||+|+..|+.+++++|++
T Consensus 108 A~-~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 108 AV-QEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HH-HHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HH-HhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 99 888 777777 4467889999999999999999999999863
No 70
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.90 E-value=1.6e-23 Score=188.66 Aligned_cols=140 Identities=16% Similarity=0.124 Sum_probs=123.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHH
Q 043183 5 RRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLH 84 (564)
Q Consensus 5 g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~ 84 (564)
..||||.|++.|+.++++.|++.++.. . .+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~--~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~- 75 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPF--T-TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMAA- 75 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCC--C-CCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHHH-
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCC--C-cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-
Confidence 468999999999999999999998753 2 478899999999999999999999988 6678889999999999999
Q ss_pred hch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHH
Q 043183 85 LEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHA 159 (564)
Q Consensus 85 ~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~ 159 (564)
..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++ .+.+ .+.+|.+|.||||+
T Consensus 76 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~ga~-~~~~~~~g~t~l~~ 139 (153)
T 1awc_B 76 SEGHANIVEVLLKHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK--------------YGAD-VHTQSKFCKTAFDI 139 (153)
T ss_dssp HHTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHH
T ss_pred HcChHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-ccccCCCCCCHHHH
Confidence 888 888887755 57889999999999999999999999863 4444 47889999999999
Q ss_pred HHhCCCC
Q 043183 160 LARKNLT 166 (564)
Q Consensus 160 Aa~~g~~ 166 (564)
|+..|+.
T Consensus 140 A~~~~~~ 146 (153)
T 1awc_B 140 SIDNGNE 146 (153)
T ss_dssp HHHTTCH
T ss_pred HHHcCCH
Confidence 9999954
No 71
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.90 E-value=2.7e-23 Score=190.55 Aligned_cols=142 Identities=19% Similarity=0.192 Sum_probs=125.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183 4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL 83 (564)
Q Consensus 4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa 83 (564)
.+.++||.||+.|+.++++.|++.+.+. ...|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+
T Consensus 13 ~~~~~l~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 13 DLGKKLLEAARAGRDDEVRILMANGADV--NAEDASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred cccchHHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHH
Confidence 4678999999999999999999987653 44688999999999999999999999998 6678889999999999999
Q ss_pred Hhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHH
Q 043183 84 HLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLH 158 (564)
Q Consensus 84 ~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh 158 (564)
..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++ .+.+ .+.+|..|.||||
T Consensus 89 -~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~l~ 151 (169)
T 2y1l_E 89 -LFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLK--------------NGAD-VNAQDKFGKTAFD 151 (169)
T ss_dssp -HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHH
T ss_pred -HcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-CCCcCCCCCCHHH
Confidence 998 888888755 57789999999999999999999999863 4444 4788999999999
Q ss_pred HHHhCCCC
Q 043183 159 ALARKNLT 166 (564)
Q Consensus 159 ~Aa~~g~~ 166 (564)
+|+..|+.
T Consensus 152 ~A~~~~~~ 159 (169)
T 2y1l_E 152 ISIDNGNE 159 (169)
T ss_dssp HHHHTTCH
T ss_pred HHHHhCCH
Confidence 99999964
No 72
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.90 E-value=3.2e-24 Score=195.64 Aligned_cols=117 Identities=23% Similarity=0.229 Sum_probs=70.8
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183 3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML 82 (564)
Q Consensus 3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A 82 (564)
.+|.||||.|++.|+.+.++.|++..+... ...+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQSVNC-RDIEGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLHNA 82 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTTTTTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcCCCCc-cccccCCCCHHHHHHHcChHHHHHHHHhc--CCCCCccCCCCCCHHHHH
Confidence 456677777777777777777776554433 33466677777777777777777777776 445566666666666666
Q ss_pred HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHH
Q 043183 83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICM 124 (564)
Q Consensus 83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~L 124 (564)
+ ..| +.|++.+.+ ++.+|..|+||||+|+..|+.+++++|
T Consensus 83 ~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L 127 (165)
T 3twr_A 83 C-SYGHYEVAELLVKHGAV-VNVADLWKFTPLHEAAAKGKYEICKLL 127 (165)
T ss_dssp H-HTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred H-HcCcHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 6 554 444444322 234444455555555555555444444
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.90 E-value=1.9e-23 Score=188.10 Aligned_cols=146 Identities=18% Similarity=0.144 Sum_probs=124.8
Q ss_pred CChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHH
Q 043183 40 GDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAAS 114 (564)
Q Consensus 40 g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~ 114 (564)
..||||.|+..|+.+++++|++.+ .+++ .|..|.||||+|+ ..| +.|++.+.+ ++.+|..|+||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g--~~~~-~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 76 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANG--APFT-TDWLGTSPLHLAA-QYGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAAS 76 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT--CCCC-CCTTCCCHHHHHH-HHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcC--CCCC-cCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence 468999999999999999999984 3443 5889999999999 999 788887755 57789999999999999
Q ss_pred cCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHH
Q 043183 115 LGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQR 194 (564)
Q Consensus 115 ~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~ 194 (564)
.|+.+++++|++ .+.+ ++.+|.+|+||||+|+..|+.
T Consensus 77 ~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~~~---------------------------- 113 (153)
T 1awc_B 77 EGHANIVEVLLK--------------HGAD-VNAKDMLKMTALHWATEHNHQ---------------------------- 113 (153)
T ss_dssp HTCHHHHHHHHT--------------TTCC-TTCCCTTSCCHHHHHHHTTCH----------------------------
T ss_pred cChHHHHHHHHH--------------cCCC-CCCCCCCCCCHHHHHHHcCCH----------------------------
Confidence 999999999863 4433 478899999999999999964
Q ss_pred HhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHH
Q 043183 195 LQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLIL 242 (564)
Q Consensus 195 ~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~L 242 (564)
++++.|++ .+.+++.+|..|.||||+|+..|+.+++++|
T Consensus 114 ----~~v~~Ll~-----~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 114 ----EVVELLIK-----YGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp ----HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ----HHHHHHHH-----cCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 66776655 3557788899999999999999999999987
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.90 E-value=1.4e-23 Score=191.40 Aligned_cols=122 Identities=19% Similarity=0.223 Sum_probs=71.0
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHH
Q 043183 37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDV 111 (564)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~ 111 (564)
|.+|.||||.|++.|+.++++.|++.. +.+.+..|..|.||||+|+ ..| +.|++.+.+ ++.+|..|+||||+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAA-GYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHN 81 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHH-HcChHHHHHHHHhcCCC-CCccCCCCCCHHHH
Confidence 445666666666666666666666542 3445556666666666666 666 555555543 35556666666666
Q ss_pred HHHcCCCchHHHHHH-------------------cccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHh
Q 043183 112 AASLGHKDMPICMVS-------------------MNMLLPDVALQLCRDRPKLATLRAGDCETPLHALAR 162 (564)
Q Consensus 112 Aa~~g~~~iv~~Ll~-------------------~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~ 162 (564)
|+..|+.+++++|++ +..++.++++.|++.+.+. +.+|.+|+||||+|+.
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~ 150 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD 150 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT
T ss_pred HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc
Confidence 666666666666665 3344455555555554333 4455555555555444
No 75
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.89 E-value=9.1e-26 Score=233.53 Aligned_cols=248 Identities=14% Similarity=0.093 Sum_probs=148.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCccc-cccccCCCCChHHHHHHhcCCHHHHHHHHHcCCc---ccccCCCCCCCcHH
Q 043183 4 SRRLQTYRAALNGDWAVAKSIYDVYEGE-IGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEA---EDLAKPNKHGGTAL 79 (564)
Q Consensus 4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~-l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~---~~l~~~d~~G~TpL 79 (564)
++.||||.||+.|+.++|+.|++.+... .....+..|.||||+||..|+.++|++|++.+.. .+++.+ + .|||
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~--~-~TpL 167 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE--N-YHAF 167 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH--H-HHHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC--C-CCHH
Confidence 4679999999999999999999986521 1123456789999999999999999999999532 123323 3 8999
Q ss_pred HHHHHhch-----HHHHhcCccccc-ccCCCCCcHHHHHH-HcCCCchHHHHHH------------cccCCHHHHHHHHH
Q 043183 80 SMLLHLEG-----RVMMKHNRSIAM-VRDHNQTLPIDVAA-SLGHKDMPICMVS------------MNMLLPDVALQLCR 140 (564)
Q Consensus 80 H~Aa~~~G-----~~Ll~~~~~~~~-~~d~~G~TpLh~Aa-~~g~~~iv~~Ll~------------~~~~~~~i~~~Ll~ 140 (564)
|+|| ..| +.|++.+++... ..|..|.||||+|+ ..|+.++|++|++ ...|+.++++.|++
T Consensus 168 h~Aa-~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~~~taL~~Aa~~g~~evv~lL~~ 246 (376)
T 2aja_A 168 RLAA-ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIAR 246 (376)
T ss_dssp HHHH-HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHH
T ss_pred HHHH-HCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCccchHHHHHHHCCCHHHHHHHHh
Confidence 9999 999 889999876432 36788999999999 9999999999986 44566666666666
Q ss_pred cCCccccccCCCCCcHHHHHHhCCCCCccccccccc--chHHHHhhhcCCcHHHHHHhHHHHHHHHHHh----hccCChh
Q 043183 141 DRPKLATLRAGDCETPLHALARKNLTSSNFINQNQR--GIFRRCFNLGAEDVEVQRLQALKLVERLCGK----VALLSDS 214 (564)
Q Consensus 141 ~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~--~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~----~l~~~~~ 214 (564)
.+.+. +..| +++++|+..|+.+..-...... ..++.++...... ..+.++++... .+...+
T Consensus 247 ~ga~~-~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~-------~~~~~~~Ll~~~~vk~l~~~g- 313 (376)
T 2aja_A 247 HVNRL-KEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV-------LLDDIRFLLSIPGIKALAPTA- 313 (376)
T ss_dssp HHHHH-HHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGG-------GHHHHHHHHTSTTTGGGSSCC-
T ss_pred cCccc-cccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhh-------HHHHHHHHHhChhhhhhhccC-
Confidence 65443 2222 3666666666542000000000 0111122221111 12333333221 000111
Q ss_pred hHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCcccc
Q 043183 215 EISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLNI 284 (564)
Q Consensus 215 ~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~~ 284 (564)
..++.+.||||+|+..|+.+++++|++.+ .+.. ..|+||+.+|...|..++.++
T Consensus 314 ---~~~n~~~~~L~~A~~~g~~e~v~lLl~~~-~v~~------------~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 314 ---TIPGDANELLRLALRLGNQGACALLLSIP-SVLA------------LTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp ---SSTTCCCHHHHHHHHHTCTTHHHHHTTSH-HHHH------------SCC------------------
T ss_pred ---CCCCCccHHHHHHHHcCcHHHHHHHHcCh-HHHH------------HHHHhccccccccccccHHHH
Confidence 12345689999999999999999999753 2111 789999999999999887654
No 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.89 E-value=1.1e-23 Score=194.93 Aligned_cols=161 Identities=14% Similarity=0.065 Sum_probs=100.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183 4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL 83 (564)
Q Consensus 4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa 83 (564)
.+.++||.||..|+.+.++.|++..+..+ ...+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNTENDL-NQGDDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTPLHLAA 80 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCTTSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCcccc-cccCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH
Confidence 46677888888888888888887765544 34577778888888888888888888877 4555556666666666666
Q ss_pred HhchHHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhC
Q 043183 84 HLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARK 163 (564)
Q Consensus 84 ~~~G~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~ 163 (564)
. .|+.+++++|++ .+.+ ++.+|.+|+||||+|+..
T Consensus 81 -~-----------------------------~~~~~~v~~Ll~--------------~g~~-~~~~d~~g~t~L~~A~~~ 115 (179)
T 3f6q_A 81 -S-----------------------------HGHRDIVQKLLQ--------------YKAD-INAVNEHGNVPLHYACFW 115 (179)
T ss_dssp -H-----------------------------TTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHT
T ss_pred -H-----------------------------cCCHHHHHHHHH--------------cCCC-CCccCCCCCCHHHHHHHc
Confidence 4 445555555532 3222 245556666666666665
Q ss_pred CCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHH
Q 043183 164 NLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILT 243 (564)
Q Consensus 164 g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL 243 (564)
|+. ++++.|++ .+.+++.+|..|.||||+|+..++.+++++|+
T Consensus 116 ~~~--------------------------------~~v~~Ll~-----~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 116 GQD--------------------------------QVAEDLVA-----NGALVSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp TCH--------------------------------HHHHHHHH-----TTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred CCH--------------------------------HHHHHHHH-----CCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 533 34444433 23345556666677777777777777777777
Q ss_pred HhCCCc
Q 043183 244 REYPNL 249 (564)
Q Consensus 244 ~~~~~~ 249 (564)
+.++++
T Consensus 159 ~~g~~~ 164 (179)
T 3f6q_A 159 KMGQNL 164 (179)
T ss_dssp HTTCCC
T ss_pred HhhcCc
Confidence 777766
No 77
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.89 E-value=3.6e-23 Score=191.48 Aligned_cols=118 Identities=16% Similarity=0.146 Sum_probs=101.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|..|.||||.|+..|+.++++.|++.+.+. ...|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 36 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~ 111 (179)
T 3f6q_A 36 DDHGFSPLHWACREGRSAVVEMLIMRGARI--NVMNRGDDTPLHLAASHGHRDIVQKLLQY--KADINAVNEHGNVPLHY 111 (179)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHH
Confidence 567999999999999999999999997653 44688999999999999999999999998 66788899999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMV 125 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll 125 (564)
|+ ..| +.|++.+.+ ++.+|..|.||||+|+..++.+++++|+
T Consensus 112 A~-~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 112 AC-FWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp HH-HTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred HH-HcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 99 887 777777654 5777888888888888888777777764
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.88 E-value=3e-23 Score=201.53 Aligned_cols=212 Identities=12% Similarity=0.018 Sum_probs=129.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
+..|.||||.|++.|+.+.++.|++.+.+. . .+..|.||||.|+..|+.++|++|++. +.+++.+|..|.||||+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~--~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~ 76 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV--K-FNPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHN 76 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCc--c-cCchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHH
Confidence 457999999999999999999999987663 1 357889999999999999999999988 55889999999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCC-c
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCE-T 155 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~-T 155 (564)
|+ ..| +.|++.+.+ ++.+|..|+||||+|+..|+.+++++|+ +.+.+. +.+|..|. |
T Consensus 77 A~-~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll--------------~~ga~~-~~~~~~~~~t 139 (239)
T 1ycs_B 77 AV-CAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLV--------------ESGAAV-FAMTYSDMQT 139 (239)
T ss_dssp HH-HHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHH--------------HTTCCT-TCCCSSSCCC
T ss_pred HH-HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHH--------------HcCCCc-ceecCCCCcc
Confidence 99 999 888888755 5888999999999999999999999985 355555 66666665 9
Q ss_pred HHHHH--HhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChh----hHhhhhcCCchHHHH
Q 043183 156 PLHAL--ARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDS----EISRLISKPGALIFD 229 (564)
Q Consensus 156 pLh~A--a~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~----~~~~~d~~G~TpLh~ 229 (564)
|||+| +..|+. ++++.|++.....+.. .....|..|.+|+++
T Consensus 140 ~l~~a~~~~~g~~--------------------------------~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eL 187 (239)
T 1ycs_B 140 AADKCEEMEEGYT--------------------------------QCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL 187 (239)
T ss_dssp HHHHCCSSSTTCC--------------------------------CHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBC
T ss_pred hHHHHHHhhhccH--------------------------------HHHHHHHHhhhcccccccceEEEEeccCCCCCCcc
Confidence 99999 666755 4566665543222211 111236778999999
Q ss_pred HHHcCCHHHHHHHHHhCCCc--ccccccccchHHHh-hcCCchHHHHHhc
Q 043183 230 AAKQGNVGFLLILTREYPNL--HISYRRFESSGAHL-QTRNNILHLAAML 276 (564)
Q Consensus 230 Aa~~g~~~iv~~LL~~~~~~--~~~~~r~~~i~n~~-~~G~TpLhlAa~~ 276 (564)
|.+.|. +++.|.+.+.+. .+.. ..- ..|.+|.++....
T Consensus 188 a~~~G~--~i~vl~~~~~~~~~Ww~~-------~~~~~~G~~P~~yv~~~ 228 (239)
T 1ycs_B 188 PMKEGD--CMTIIHREDEDEIEWWWA-------RLNDKEGYVPRNLLGLY 228 (239)
T ss_dssp CBCSSC--EEEECCCCTTSCSSEEEE-------EETTEEEEEEGGGEECC
T ss_pred cccCCC--EEEEEEecCCCCCCEEEE-------EECCcEEEeehHHeeEC
Confidence 998887 445554444331 1100 000 5677777775544
No 79
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.88 E-value=5.7e-24 Score=206.67 Aligned_cols=188 Identities=15% Similarity=0.049 Sum_probs=119.9
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHH
Q 043183 37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDV 111 (564)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~ 111 (564)
+..|.||||.|++.|+.++++.|++. +.+++. +..|.||||.|+ ..| +.|++.+. .++.+|..|+||||+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~--g~~~~~-~~~~~t~L~~A~-~~g~~~~v~~Ll~~g~-~~~~~d~~g~t~L~~ 76 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAH--GMRVKF-NPLPLALLLDSS-LEGEFDLVQRIIYEVD-DPSLPNDEGITALHN 76 (239)
T ss_dssp --------------------------------------CHHHHHHHH-HHTCHHHHHHHTSTTS-SCCCCCTTSCCHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhcc--CCCccc-CchhhHHHHHHH-HcCCHHHHHHHHHcCC-CCCCcCCCCCCHHHH
Confidence 34699999999999999999999998 445553 477899999999 999 77888876 468889999999999
Q ss_pred HHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHH
Q 043183 112 AASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVE 191 (564)
Q Consensus 112 Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~ 191 (564)
||..|+.+++++|++ .+.+ ++.+|.+|+||||+|+..|+.
T Consensus 77 A~~~g~~~~v~~Ll~--------------~ga~-~~~~d~~g~tpL~~A~~~~~~------------------------- 116 (239)
T 1ycs_B 77 AVCAGHTEIVKFLVQ--------------FGVN-VNAADSDGWTPLHCAASCNNV------------------------- 116 (239)
T ss_dssp HHHHTCHHHHHHHHH--------------HTCC-TTCCCTTCCCHHHHHHHTTCH-------------------------
T ss_pred HHHcCCHHHHHHHHH--------------cCCC-CCccCCCCCCHHHHHHHcCCH-------------------------
Confidence 999999999999863 5444 488999999999999999964
Q ss_pred HHHHhHHHHHHHHHHhhccCChhhHhhhhcCCc-hHHHHH--HHcCCHHHHHHHHHhCCCcccccccccchHHHh-hcCC
Q 043183 192 VQRLQALKLVERLCGKVALLSDSEISRLISKPG-ALIFDA--AKQGNVGFLLILTREYPNLHISYRRFESSGAHL-QTRN 267 (564)
Q Consensus 192 v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~-TpLh~A--a~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~-~~G~ 267 (564)
++++.|++ .+.+++.+|..|. ||||+| +..|+.+++++|++++++......... ..+. ..|.
T Consensus 117 -------~~v~~Ll~-----~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~--~al~d~~~~ 182 (239)
T 1ycs_B 117 -------QVCKFLVE-----SGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVI--YALWDYEPQ 182 (239)
T ss_dssp -------HHHHHHHH-----TTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEE--EESSCBCCS
T ss_pred -------HHHHHHHH-----cCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceE--EEEeccCCC
Confidence 56666655 3567777887777 999999 889999999999998877633210000 0011 6789
Q ss_pred chHHHHHhcCCCCccccc
Q 043183 268 NILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 268 TpLhlAa~~~~~~~~~~l 285 (564)
||+|+|.+.|. +++++
T Consensus 183 ~~~eLa~~~G~--~i~vl 198 (239)
T 1ycs_B 183 NDDELPMKEGD--CMTII 198 (239)
T ss_dssp STTBCCBCSSC--EEEEC
T ss_pred CCCcccccCCC--EEEEE
Confidence 99999988886 45554
No 80
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.87 E-value=3.2e-22 Score=186.60 Aligned_cols=168 Identities=11% Similarity=-0.003 Sum_probs=128.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCH----HHHHHHHHcCCcccccCCCCCCCcHH
Q 043183 4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYI----EFLKELVKIMEAEDLAKPNKHGGTAL 79 (564)
Q Consensus 4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~----~iv~~Ll~~~~~~~l~~~d~~G~TpL 79 (564)
+++++||.||+.|+.+.++.+++.+.... .+..|.||||+|+..|+. +++++|++. +.+++.+|..|.|||
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~~~~---~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~TpL 79 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDK---ESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTLF 79 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHHHHHHSSSCH---HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTCCCTH
T ss_pred ccccHHHHHHHcCCHHHHHHHHhcCcccc---cccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCCCcHH
Confidence 57899999999999999999998876532 236799999999999985 599999998 678888899999999
Q ss_pred HHHHHhchHHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCC-cHHH
Q 043183 80 SMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCE-TPLH 158 (564)
Q Consensus 80 H~Aa~~~G~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~-TpLh 158 (564)
|+|+ ..| .++. .+..+++++| ++.+.+. +.+|.+|+ ||||
T Consensus 80 h~a~-~~~------~~~~-----------------~~~~~iv~~L--------------l~~Gadi-n~~d~~g~ttpLh 120 (186)
T 3t8k_A 80 FPLF-QGG------GNDI-----------------TGTTELCKIF--------------LEKGADI-TALYKPYKIVVFK 120 (186)
T ss_dssp HHHH-HHC------TTCH-----------------HHHHHHHHHH--------------HHTTCCS-SSCBGGGTBCTTG
T ss_pred HHHH-HcC------Ccch-----------------hhHHHHHHHH--------------HHCCCCC-CccCCCcCchHHH
Confidence 9988 433 0000 0112455555 5565554 88999999 9999
Q ss_pred HHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHH
Q 043183 159 ALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGF 238 (564)
Q Consensus 159 ~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~i 238 (564)
+|+..+..+ ....++++.| +...+.+++.+|..|.||||+|++.|+.++
T Consensus 121 ~A~~~~~~~---------------------------~~~~~iv~~L----l~~~gad~~~~d~~G~TpL~~A~~~~~~~~ 169 (186)
T 3t8k_A 121 NIFNYFVDE---------------------------NEMIPLYKLI----FSQSGLQLLIKDKWGLTALEFVKRCQKPIA 169 (186)
T ss_dssp GGGGCCSCH---------------------------HHHHHHHHHH----HTSTTCCTTCCCTTSCCHHHHHHTTTCHHH
T ss_pred HHHHcCCCh---------------------------hhHHHHHHHH----HHhcCCCCcccCCCCCCHHHHHHHcCCHHH
Confidence 999966430 0112455544 333678899999999999999999999999
Q ss_pred HHHHHHhC
Q 043183 239 LLILTREY 246 (564)
Q Consensus 239 v~~LL~~~ 246 (564)
|++|++..
T Consensus 170 v~~L~~~~ 177 (186)
T 3t8k_A 170 LKMMEDYI 177 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
No 81
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.85 E-value=3.2e-23 Score=214.42 Aligned_cols=193 Identities=12% Similarity=0.064 Sum_probs=146.9
Q ss_pred cHHHHHHH-cCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCccc-ccCCCCCCCcHHHHHHH
Q 043183 7 LQTYRAAL-NGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAED-LAKPNKHGGTALSMLLH 84 (564)
Q Consensus 7 t~Lh~Aa~-~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~-l~~~d~~G~TpLH~Aa~ 84 (564)
++++.|+. .++.+.++.+++++ .++.||||+||+.|+.++|++|++.+.+.. .+..|..|.||||+||
T Consensus 67 l~~~~a~~~~~~~~~~~~l~~~g---------~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa- 136 (376)
T 2aja_A 67 LCLYYAHYNRNAKQLWSDAHKKG---------IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA- 136 (376)
T ss_dssp HHHHHHHTTTTCTTHHHHHHHHT---------CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHcC---------CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHH-
Confidence 45666655 46667777776554 345699999999999999999999854221 2345667899999999
Q ss_pred hch-----HHHHhcCccc--ccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccc--cCCCCCc
Q 043183 85 LEG-----RVMMKHNRSI--AMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATL--RAGDCET 155 (564)
Q Consensus 85 ~~G-----~~Ll~~~~~~--~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~--~d~~G~T 155 (564)
..| +.|++.+++. .+..+.+ .||||+||..|+.++|++|++ .+++. +. .|.+|.|
T Consensus 137 ~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~--------------~ga~~-~~~~~d~~g~T 200 (376)
T 2aja_A 137 ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCE--------------LAPTE-ATAMIQAENYY 200 (376)
T ss_dssp HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHH--------------SCGGG-HHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHH--------------cCCcc-chhccCCCCCC
Confidence 999 8899988631 1222223 999999999999999999864 54443 33 7888999
Q ss_pred HHHHHH-hCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcC
Q 043183 156 PLHALA-RKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQG 234 (564)
Q Consensus 156 pLh~Aa-~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g 234 (564)
|||+|+ ..|+. ++++.|++ .+. .|.||||+|+.+|
T Consensus 201 pL~~Aa~~~G~~--------------------------------eiv~~Ll~-----~ga-------~~~taL~~Aa~~g 236 (376)
T 2aja_A 201 AFRWAAVGRGHH--------------------------------NVINFLLD-----CPV-------MLAYAEIHEFEYG 236 (376)
T ss_dssp HHHHHHSTTCCH--------------------------------HHHHHHTT-----SHH-------HHHHHHHCTTTTT
T ss_pred HHHHHHHHCCCH--------------------------------HHHHHHHh-----CCC-------ccchHHHHHHHCC
Confidence 999999 99954 56666533 332 2699999999999
Q ss_pred CHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCCCccc
Q 043183 235 NVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQDRLN 283 (564)
Q Consensus 235 ~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~~~~~ 283 (564)
+.+++++|+++++++ +...++++.|+..|+.++++
T Consensus 237 ~~evv~lL~~~ga~~--------------~~~~~~l~~A~~~g~~~vv~ 271 (376)
T 2aja_A 237 EKYVNPFIARHVNRL--------------KEMHDAFKLSNPDGVFDLVT 271 (376)
T ss_dssp TTTHHHHHHHHHHHH--------------HHHHTTTTTTSSSSCCCCSS
T ss_pred CHHHHHHHHhcCccc--------------ccccHHHHHHHHCCChhhhc
Confidence 999999999998876 55668999999999988765
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.84 E-value=2.9e-21 Score=174.48 Aligned_cols=138 Identities=15% Similarity=0.089 Sum_probs=105.5
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCc-HHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGT-ALS 80 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~T-pLH 80 (564)
+..|.||||.|++.|+.++++.|++.+.+ + ...|..|.||||+|+ .|+.+++++|++. +.+++.+|..|.| |||
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~--g~~~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAGAN-P-NAPNSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPATLTRPVH 83 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTTCC-T-TCCCSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcCCC-C-CCCCCCCCCHHHHHH-cCCHHHHHHHHHc--CCCCCCcCCCCCcHHHH
Confidence 35789999999999999999999998765 3 446889999999995 9999999999998 6788999999999 999
Q ss_pred HHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCc
Q 043183 81 MLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCET 155 (564)
Q Consensus 81 ~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~T 155 (564)
+|+ ..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++ . +...+.+|..|.|
T Consensus 84 ~A~-~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~--------------~-ga~~~~~~~~g~t 146 (156)
T 1bi7_B 84 DAA-REGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRA--------------A-AGGTRGSNHARID 146 (156)
T ss_dssp HHH-HHTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHSS--------------C-C------------
T ss_pred HHH-HCCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCHHHHHHHHHH--------------c-CCCCCccCcCcCc
Confidence 999 998 888888754 57889999999999999999999999863 4 3444788999999
Q ss_pred HHHHHH
Q 043183 156 PLHALA 161 (564)
Q Consensus 156 pLh~Aa 161 (564)
|.+-+.
T Consensus 147 ~~~~~~ 152 (156)
T 1bi7_B 147 AAEGPS 152 (156)
T ss_dssp ------
T ss_pred ccccCC
Confidence 988554
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.83 E-value=1.2e-20 Score=166.39 Aligned_cols=118 Identities=16% Similarity=0.162 Sum_probs=106.7
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCC-CCcHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKH-GGTALS 80 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~-G~TpLH 80 (564)
|..|.||||.|++.|+.++++.|++.+.+ + ...|..|.||||+|+. |+.+++++|++. +.+++.+|.. |.||||
T Consensus 9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~ 83 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQVETVRQLLEAGAD-P-NALNRFGRRPIQVMMM-GSAQVAELLLLH--GAEPNCADPATLTRPVH 83 (136)
T ss_dssp CCCCSCHHHHHHHTTCHHHHHHHHHTTCC-T-TCCCTTCCTTTTTSTT-SCHHHHHHHHHH--TCCSSCCBTTTTBCHHH
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHHcCCC-c-CCcCCCCCCHHHHHHc-CCHHHHHHHHHC--CCCCCCcCCCCCCCHHH
Confidence 56899999999999999999999998765 3 4468899999999999 999999999998 6688899999 999999
Q ss_pred HHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183 81 MLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS 126 (564)
Q Consensus 81 ~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~ 126 (564)
+|+ ..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++
T Consensus 84 ~A~-~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~ 132 (136)
T 1d9s_A 84 DAA-REGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHA 132 (136)
T ss_dssp HHH-HHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHH
T ss_pred HHH-HcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999 998 888888755 57889999999999999999999999974
No 84
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.83 E-value=2.2e-20 Score=164.54 Aligned_cols=118 Identities=20% Similarity=0.210 Sum_probs=106.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183 3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML 82 (564)
Q Consensus 3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A 82 (564)
..+.||||.||..|+.++++.|++.+.+. ...|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A 87 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANGADV--NAKDEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIGFTPLHLA 87 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHH
Confidence 35789999999999999999999997663 44688999999999999999999999998 668889999999999999
Q ss_pred HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183 83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS 126 (564)
Q Consensus 83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~ 126 (564)
+ ..| +.|++.+.+ ++.+|.+|.||||+|+..|+.+++++|++
T Consensus 88 ~-~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~ 134 (136)
T 2jab_A 88 A-FIGHLEIAEVLLKHGAD-VNAQDKFGKTAFDISIGNGNEDLAEILQK 134 (136)
T ss_dssp H-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred H-HcCCHHHHHHHHHcCCC-CcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence 9 888 888888755 57889999999999999999999999864
No 85
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.82 E-value=8.9e-21 Score=184.78 Aligned_cols=138 Identities=17% Similarity=0.133 Sum_probs=117.2
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccC-CCCCcHHH
Q 043183 37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRD-HNQTLPID 110 (564)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d-~~G~TpLh 110 (564)
+.+|.||||+|+..|+.++|+.|++ +.+++.+|..|.||||+|+ ..| +.|++.+.+. +.+| ..|+||||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~ 116 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADL-DHRDMRGGLTALH 116 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHH-HHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHH-HCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence 4578999999999999999999998 4578889999999999999 898 8888887664 4455 78999999
Q ss_pred HHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcH
Q 043183 111 VAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDV 190 (564)
Q Consensus 111 ~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~ 190 (564)
+|+..|+.+++++|++ .+.+ ++.+|.+|+||||+|+..++.
T Consensus 117 ~A~~~g~~~~v~~Ll~--------------~ga~-~~~~d~~g~t~l~~A~~~~~~------------------------ 157 (244)
T 3ui2_A 117 MAAGYVRPEVVEALVE--------------LGAD-IEVEDERGLTALELAREILKT------------------------ 157 (244)
T ss_dssp HHHHTTCHHHHHHHHH--------------TTCC-TTCCCTTCCCHHHHHHHHHTT------------------------
T ss_pred HHHHcCCHHHHHHHHH--------------CCCC-CCCCCCCCCcHHHHHHHHHhc------------------------
Confidence 9999999999999863 5444 478999999999999975421
Q ss_pred HHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 043183 191 EVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPN 248 (564)
Q Consensus 191 ~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~ 248 (564)
..+.||||+|+..|+.+++++|++...+
T Consensus 158 ------------------------------~~~~~~l~~a~~~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 158 ------------------------------TPKGNPMQFGRRIGLEKVINVLEGQVFE 185 (244)
T ss_dssp ------------------------------CCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred ------------------------------cCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence 3468999999999999999999987544
No 86
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.82 E-value=6.7e-21 Score=172.10 Aligned_cols=85 Identities=19% Similarity=0.289 Sum_probs=51.1
Q ss_pred cCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch----HHHHhcCcccccccCCCCCc-HHH
Q 043183 36 IAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG----RVMMKHNRSIAMVRDHNQTL-PID 110 (564)
Q Consensus 36 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G----~~Ll~~~~~~~~~~d~~G~T-pLh 110 (564)
.+..|.||||+|+..|+.++|++|++. +.+++.+|..|.||||+|+ ... +.|++.+.+ ++.+|..|.| |||
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRPVH 83 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHHHH
Confidence 467889999999999999999999987 5567777777777777655 211 333333322 2333444444 444
Q ss_pred HHHHcCCCchHHHH
Q 043183 111 VAASLGHKDMPICM 124 (564)
Q Consensus 111 ~Aa~~g~~~iv~~L 124 (564)
+|+..|+.+++++|
T Consensus 84 ~A~~~~~~~~v~~L 97 (156)
T 1bi7_B 84 DAAREGFLDTLVVL 97 (156)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHCCCHHHHHHH
Confidence 44444444444443
No 87
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.82 E-value=1.1e-20 Score=175.60 Aligned_cols=135 Identities=17% Similarity=0.146 Sum_probs=114.9
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccC-CCCCcHHH
Q 043183 37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRD-HNQTLPID 110 (564)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d-~~G~TpLh 110 (564)
+.+|.||||+|+..|+.++++.|++ +.+++.+|..|.||||+|+ ..| +.|++.+.+. +.+| ..|+||||
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~-~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~ 115 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVA-GLGSDKCVRLLAEAGADL-DHRDMRGGLTALH 115 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHH-HcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence 5678999999999999999999998 4578889999999999999 888 8888887664 4555 88999999
Q ss_pred HHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcH
Q 043183 111 VAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDV 190 (564)
Q Consensus 111 ~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~ 190 (564)
+|+..|+.+++++|++ .+.+ ++.+|.+|+||||+|++.++.
T Consensus 116 ~A~~~~~~~~v~~Ll~--------------~ga~-~~~~d~~g~tpl~~A~~~~~~------------------------ 156 (183)
T 3deo_A 116 MAAGYVRPEVVEALVE--------------LGAD-IEVEDERGLTALELAREILKT------------------------ 156 (183)
T ss_dssp HHHHTTCHHHHHHHHH--------------HTCC-TTCCCTTSCCHHHHHHHHHHT------------------------
T ss_pred HHHhcCcHHHHHHHHH--------------cCCC-CcCCCCCCCCHHHHHHHhccC------------------------
Confidence 9999999999999853 5444 478999999999999986522
Q ss_pred HHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHh
Q 043183 191 EVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTRE 245 (564)
Q Consensus 191 ~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~ 245 (564)
..+.+||++|+..|+.+++++|.++
T Consensus 157 ------------------------------~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 157 ------------------------------TPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp ------------------------------CCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ------------------------------cccccHHHHHHHcCHHHHHHHHHHh
Confidence 2358999999999999999999764
No 88
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.82 E-value=1e-20 Score=166.79 Aligned_cols=129 Identities=16% Similarity=0.181 Sum_probs=84.5
Q ss_pred ccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhchHHHHhcCcccccccCCCCCcHHHHHHH
Q 043183 35 AIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAAS 114 (564)
Q Consensus 35 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G~~Ll~~~~~~~~~~d~~G~TpLh~Aa~ 114 (564)
..+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+ .
T Consensus 7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~------------------------------~ 54 (136)
T 1d9s_A 7 MLGGSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMM------------------------------M 54 (136)
T ss_dssp CCCCCCSCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCTTTTTST------------------------------T
T ss_pred CCCCCCccHHHHHHHcCCHHHHHHHHHc--CCCcCCcCCCCCCHHHHHH------------------------------c
Confidence 3567788888888888888888888877 4456666666666666666 3
Q ss_pred cCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCC-CCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHH
Q 043183 115 LGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGD-CETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQ 193 (564)
Q Consensus 115 ~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~-G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~ 193 (564)
|+.+++++|+ +.+.+. +.+|.. |+||||+|+..|+.
T Consensus 55 -~~~~~v~~Ll--------------~~g~~~-~~~~~~~g~t~L~~A~~~~~~--------------------------- 91 (136)
T 1d9s_A 55 -GSAQVAELLL--------------LHGAEP-NCADPATLTRPVHDAAREGFL--------------------------- 91 (136)
T ss_dssp -SCHHHHHHHH--------------HHTCCS-SCCBTTTTBCHHHHHHHHTCH---------------------------
T ss_pred -CCHHHHHHHH--------------HCCCCC-CCcCCCCCCCHHHHHHHcCCH---------------------------
Confidence 4555555553 233332 455665 66666666666643
Q ss_pred HHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 043183 194 RLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPN 248 (564)
Q Consensus 194 ~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~ 248 (564)
++++.|++ .+.+++.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 92 -----~~v~~Ll~-----~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 92 -----DTLVVLHR-----AGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp -----HHHHHHHH-----TCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred -----HHHHHHHH-----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 44444433 2345566677788888888888888888888887764
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.81 E-value=1.2e-19 Score=156.54 Aligned_cols=117 Identities=26% Similarity=0.356 Sum_probs=105.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183 4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL 83 (564)
Q Consensus 4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa 83 (564)
+|+||||.|++.|+.++++.|++.+.+. ...+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT--TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC--CCcCCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCcHHHHHH
Confidence 5899999999999999999999987653 44688999999999999999999999998 6678889999999999999
Q ss_pred Hhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183 84 HLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS 126 (564)
Q Consensus 84 ~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~ 126 (564)
..| +.|++.+.+ ++.+|..|.||||+|+..|+.+++++|++
T Consensus 77 -~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~ 122 (126)
T 1n0r_A 77 -RNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122 (126)
T ss_dssp -HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred -HcChHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence 998 888887755 57889999999999999999999999964
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.81 E-value=1.7e-19 Score=155.61 Aligned_cols=126 Identities=21% Similarity=0.306 Sum_probs=87.9
Q ss_pred CCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhchHHHHhcCcccccccCCCCCcHHHHHHHcCCC
Q 043183 39 RGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEGRVMMKHNRSIAMVRDHNQTLPIDVAASLGHK 118 (564)
Q Consensus 39 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~ 118 (564)
+|.||||+|+..|+.+++++|++. +.+++..|..|.||||+|+ ..|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~------------------------------~~~~~ 48 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA------------------------------RNGHL 48 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHH------------------------------HHTCH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHH------------------------------HcCcH
Confidence 488999999999999999999987 4455555666666666666 44556
Q ss_pred chHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHH
Q 043183 119 DMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQAL 198 (564)
Q Consensus 119 ~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~ 198 (564)
+++++|++ .+.+ .+.+|..|.||||+|+..|+.
T Consensus 49 ~~~~~Ll~--------------~g~~-~~~~~~~g~t~l~~A~~~~~~-------------------------------- 81 (126)
T 1n0r_A 49 EVVKLLLE--------------AGAD-VNAKDKNGRTPLHLAARNGHL-------------------------------- 81 (126)
T ss_dssp HHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHTTCH--------------------------------
T ss_pred HHHHHHHH--------------cCCC-CcccCCCCCcHHHHHHHcChH--------------------------------
Confidence 66666642 3222 355666777777777776643
Q ss_pred HHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 043183 199 KLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPN 248 (564)
Q Consensus 199 ~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~ 248 (564)
++++.|++ .+.+++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 82 ~~~~~Ll~-----~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 82 EVVKLLLE-----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHHHHHH-----cCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 45555543 2345566777888999999999999999999988875
No 91
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.79 E-value=5.3e-20 Score=162.21 Aligned_cols=124 Identities=15% Similarity=0.121 Sum_probs=105.3
Q ss_pred ccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchH
Q 043183 100 VRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIF 179 (564)
Q Consensus 100 ~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~ 179 (564)
.+|.+|+||||+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+..|+.
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~--------------~g~~-~~~~~~~g~t~L~~A~~~~~~------------- 56 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQ--------------NGSD-PNVKDHAGWTPLHEACNHGHL------------- 56 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHH--------------TTCC-SCCCCTTSCCHHHHHHHTTCH-------------
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCCC-CCcCCCCCCCHHHHHHHcCCH-------------
Confidence 678899999999999999999999863 4443 478899999999999999964
Q ss_pred HHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccch
Q 043183 180 RRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESS 259 (564)
Q Consensus 180 ~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i 259 (564)
++++.|++ .+.+++.+|..|+||||+|+..|+.+++++|+++++++....
T Consensus 57 -------------------~~~~~Ll~-----~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~------ 106 (137)
T 3c5r_A 57 -------------------KVVELLLQ-----HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN------ 106 (137)
T ss_dssp -------------------HHHHHHHH-----TTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC------
T ss_pred -------------------HHHHHHHH-----cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC------
Confidence 56666654 355778889999999999999999999999999999884433
Q ss_pred HHHhhcCCchHHHHHhcCCCCccccc
Q 043183 260 GAHLQTRNNILHLAAMLPPQDRLNIV 285 (564)
Q Consensus 260 ~n~~~~G~TpLhlAa~~~~~~~~~~l 285 (564)
.+|+||||+|+..+..+++.++
T Consensus 107 ----~~g~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 107 ----IFGLRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp ----TTSCCGGGGCCCHHHHHHHSCC
T ss_pred ----CCCCCHHHHHhhccHHHHHhhc
Confidence 8999999999988887777765
No 92
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.78 E-value=2.2e-19 Score=180.43 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=110.2
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCccccccc-----cCCCCChHHHHHHhc---CCHHHHHHHHHcCCcccccCCCCCCCc
Q 043183 6 RLQTYRAALNGDWAVAKSIYDVYEGEIGIA-----IAKRGDTALRIAAAG---KYIEFLKELVKIMEAEDLAKPNKHGGT 77 (564)
Q Consensus 6 ~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~-----~~~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~l~~~d~~G~T 77 (564)
.++||.|+..|+.+.++.|++.+++. +.. .+..|.||||+|+.. |+.+++++|++. +.+++.+|..|+|
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~~g~d~-~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadvn~~d~~G~T 228 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNT 228 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCT-TSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH--SSCTTCCCTTCCC
T ss_pred HHHHhhhhhccCHHHHHHHHhcCCcc-cccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc--CCCCCCCCCCCCC
Confidence 46799999999999999999887663 221 478899999999997 899999999999 6688999999999
Q ss_pred HHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCC
Q 043183 78 ALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGD 152 (564)
Q Consensus 78 pLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~ 152 (564)
|||+|+ ..| +.|++.+.+ ++.+|.+|.||||+|+..|+.+++++|++ .+ ...
T Consensus 229 pLh~A~-~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~--------------~g-------a~~ 285 (301)
T 2b0o_E 229 ALHYAA-LYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQ--------------AQ-------AGT 285 (301)
T ss_dssp HHHHHH-HTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHH--------------HH-------HHT
T ss_pred HHHHHH-HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH--------------hc-------CCC
Confidence 999999 999 888888755 57899999999999999999999999974 21 226
Q ss_pred CCcHHHHHHhCCCC
Q 043183 153 CETPLHALARKNLT 166 (564)
Q Consensus 153 G~TpLh~Aa~~g~~ 166 (564)
|.||||+|+..|..
T Consensus 286 g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 286 FAFPLHVDYSWVIS 299 (301)
T ss_dssp TSSCCC--------
T ss_pred CCChhHHHHhcCCc
Confidence 89999999998853
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.78 E-value=9.5e-20 Score=160.57 Aligned_cols=117 Identities=12% Similarity=0.081 Sum_probs=104.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|..|+||||.|+..|+.++++.|++.+.+. ...|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 7 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 7 NHRGETLLHIASIKGDIPSVEYLLQNGSDP--NVKDHAGWTPLHEACNHGHLKVVELLLQH--KALVNTTGYQNDSPLHD 82 (137)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCCS--CCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCGGGCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CcCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCcccCcCCCCCCHHHH
Confidence 678999999999999999999999987653 44688999999999999999999999998 66888999999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICM 124 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~L 124 (564)
|+ ..| +.|++.+.+ ++.+|..|.||||+|+..+..+++++|
T Consensus 83 A~-~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~l~~l 128 (137)
T 3c5r_A 83 AA-KNGHVDIVKLLLSYGAS-RNAVNIFGLRPVDYTDDESMKSLLLLP 128 (137)
T ss_dssp HH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGCCCHHHHHHHSCC
T ss_pred HH-HcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHhhccHHHHHhhc
Confidence 99 999 888888655 588899999999999988877777665
No 94
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.78 E-value=6.3e-19 Score=155.18 Aligned_cols=112 Identities=16% Similarity=0.148 Sum_probs=97.5
Q ss_pred cCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHH
Q 043183 36 IAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPID 110 (564)
Q Consensus 36 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh 110 (564)
....+.||||+||..|+.+++++|++. +.+++.+|..|.||||+|+ ..| +.|++.+.+ ++.+|..|.||||
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~ 85 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMAN--GADVNAKDEYGLTPLYLAT-AHGHLEIVEVLLKNGAD-VNAVDAIGFTPLH 85 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH-HHTCHHHHHHHHHTTCC-TTCCCTTCCCHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-CCcCCCCCCCHHH
Confidence 356789999999999999999999998 6678899999999999999 888 888888755 5778999999999
Q ss_pred HHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCC
Q 043183 111 VAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLT 166 (564)
Q Consensus 111 ~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~ 166 (564)
+|+..|+.+++++|++ .+.+ .+.+|.+|+||||+|+..|+.
T Consensus 86 ~A~~~~~~~~v~~Ll~--------------~g~~-~~~~~~~g~tpl~~A~~~~~~ 126 (136)
T 2jab_A 86 LAAFIGHLEIAEVLLK--------------HGAD-VNAQDKFGKTAFDISIGNGNE 126 (136)
T ss_dssp HHHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHH--------------cCCC-CcCcCCCCCCHHHHHHHCCCH
Confidence 9999999999999863 4444 478899999999999999964
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.78 E-value=3.6e-19 Score=178.93 Aligned_cols=138 Identities=12% Similarity=0.047 Sum_probs=104.6
Q ss_pred CCCCcHHHHHHHhch-----HHHHhcCcccccc-----cCCCCCcHHHHHHHc---CCCchHHHHHHcccCCHHHHHHHH
Q 043183 73 KHGGTALSMLLHLEG-----RVMMKHNRSIAMV-----RDHNQTLPIDVAASL---GHKDMPICMVSMNMLLPDVALQLC 139 (564)
Q Consensus 73 ~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~-----~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~i~~~Ll 139 (564)
..+.++||.|+ ..| +.+++.+.++... .|..|+||||+|+.. |+.+++++|+
T Consensus 149 ~~~~~~L~~A~-~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll-------------- 213 (301)
T 2b0o_E 149 TPEPQRLWTAI-CNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII-------------- 213 (301)
T ss_dssp C-CHHHHHHHH-HTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHH--------------
T ss_pred CchHHHHhhhh-hccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHH--------------
Confidence 33457899999 888 6667777654332 688899999999987 7788888775
Q ss_pred HcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhh
Q 043183 140 RDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRL 219 (564)
Q Consensus 140 ~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~ 219 (564)
+.+.+ ++.+|.+|+||||+|+..|+. ++++.|++ .+++++.+
T Consensus 214 ~~gad-vn~~d~~G~TpLh~A~~~g~~--------------------------------~~v~~Ll~-----~gad~~~~ 255 (301)
T 2b0o_E 214 QNGGH-LDAKAADGNTALHYAALYNQP--------------------------------DCLKLLLK-----GRALVGTV 255 (301)
T ss_dssp HHSSC-TTCCCTTCCCHHHHHHHTTCH--------------------------------HHHHHHHH-----TTCCCSCC
T ss_pred hcCCC-CCCCCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHH-----cCCCCCCc
Confidence 45544 478899999999999999965 56666654 45678889
Q ss_pred hcCCchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhcCCC
Q 043183 220 ISKPGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAMLPPQ 279 (564)
Q Consensus 220 d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~~~~ 279 (564)
|.+|.||||+|+..|+.+++++|++++++ .|+||||+|++.|+.
T Consensus 256 d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------------~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 256 NEAGETALDIARKKHHKECEELLEQAQAG----------------TFAFPLHVDYSWVIS 299 (301)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------------TTSSCCC--------
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------------CCCChhHHHHhcCCc
Confidence 99999999999999999999999988644 589999999998874
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.77 E-value=5.3e-19 Score=172.16 Aligned_cols=124 Identities=19% Similarity=0.169 Sum_probs=107.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCC-CCCCcHHHHH
Q 043183 4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPN-KHGGTALSML 82 (564)
Q Consensus 4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d-~~G~TpLH~A 82 (564)
+|.||||.||+.|+.++++.|++ +.+ + ...|..|.||||+||..|+.++|++|++. +.+++.+| ..|.||||+|
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-DRD-V-DAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-TCC-T-TCBCTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSCCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-CCC-C-CCcCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHHH
Confidence 68899999999999999999998 443 3 44688999999999999999999999998 66788888 7899999999
Q ss_pred HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHH
Q 043183 83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPL 157 (564)
Q Consensus 83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpL 157 (564)
+ ..| +.|++.+.+ ++.+|..|.||||+|+..+ .+..+.|||
T Consensus 119 ~-~~g~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~~~--------------------------------~~~~~~~~l 164 (244)
T 3ui2_A 119 A-GYVRPEVVEALVELGAD-IEVEDERGLTALELAREIL--------------------------------KTTPKGNPM 164 (244)
T ss_dssp H-HTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHH--------------------------------TTCCCSSHH
T ss_pred H-HcCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHHH--------------------------------hccCCCCHH
Confidence 9 999 888888755 5788999999999998521 235789999
Q ss_pred HHHHhCCCC
Q 043183 158 HALARKNLT 166 (564)
Q Consensus 158 h~Aa~~g~~ 166 (564)
|+|+..|+.
T Consensus 165 ~~a~~~g~~ 173 (244)
T 3ui2_A 165 QFGRRIGLE 173 (244)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHcChH
Confidence 999999843
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.77 E-value=3.1e-19 Score=154.23 Aligned_cols=107 Identities=21% Similarity=0.231 Sum_probs=93.9
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
+..|.||||.|+..|+.++++.|++.+.+ + ...|..|.||||+|+..|+.+++++|++. +.+++.+|..|+||||+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-V-NRTLEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLS 79 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC-T-TSCCTTSSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC-c-CccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHH
Confidence 45688999999999999999999998765 3 44688999999999999999999999988 67889999999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcHHHHHHH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAAS 114 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~ 114 (564)
|+ ..| +.|++.+.+ ++.+|.+|.||||+|+.
T Consensus 80 A~-~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 80 AV-YEGHVSCVKLLLSKGAD-KTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HH-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHCCC
T ss_pred HH-HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHhCC
Confidence 99 898 888888765 68899999999999953
No 98
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.77 E-value=2.4e-19 Score=166.46 Aligned_cols=115 Identities=17% Similarity=0.127 Sum_probs=97.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCC-CCCCcHHHHH
Q 043183 4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPN-KHGGTALSML 82 (564)
Q Consensus 4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d-~~G~TpLH~A 82 (564)
+|.||||.|++.|+.++++.|++ +.+ + ...|..|.||||+|+..|+.+++++|++. +.+++.+| ..|+||||+|
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-DRD-V-DAVDENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-TSC-T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSSCCHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-cCC-C-CCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHHH
Confidence 67899999999999999999998 443 3 44688999999999999999999999998 66788788 8999999999
Q ss_pred HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHH
Q 043183 83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMV 125 (564)
Q Consensus 83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll 125 (564)
+ ..| +.|++.+.+ ++.+|.+|.||||+|+..++.+.++.++
T Consensus 118 ~-~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~~l 163 (183)
T 3deo_A 118 A-GYVRPEVVEALVELGAD-IEVEDERGLTALELAREILKTTPKGNPM 163 (183)
T ss_dssp H-HTTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHHHHTCCCCSHH
T ss_pred H-hcCcHHHHHHHHHcCCC-CcCCCCCCCCHHHHHHHhccCcccccHH
Confidence 9 998 888888755 5788999999999999866544444333
No 99
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.77 E-value=4.1e-19 Score=165.48 Aligned_cols=118 Identities=11% Similarity=0.034 Sum_probs=103.3
Q ss_pred CCCCcHHHHHHHcCCH----HHHHHHHHhCccccccccCCCCChHHHHHHhcCC------HHHHHHHHHcCCcccccCCC
Q 043183 3 RSRRLQTYRAALNGDW----AVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKY------IEFLKELVKIMEAEDLAKPN 72 (564)
Q Consensus 3 ~~g~t~Lh~Aa~~G~~----~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~------~~iv~~Ll~~~~~~~l~~~d 72 (564)
..|+||||.|+..|+. ++++.|++.+.+ + ...|.+|.||||+|+..|+ .+++++|++. +.+++.+|
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-v-n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~--Gadin~~d 111 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINKGAD-I-KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK--GADITALY 111 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-S-SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHT--TCCSSSCB
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-C-CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHC--CCCCCccC
Confidence 4699999999999985 589999998876 3 4468999999999999987 6889999998 77899999
Q ss_pred CCCC-cHHHHHHHhch----------HHHHh-cCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183 73 KHGG-TALSMLLHLEG----------RVMMK-HNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS 126 (564)
Q Consensus 73 ~~G~-TpLH~Aa~~~G----------~~Ll~-~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~ 126 (564)
..|. ||||+|+ ..| +.|++ .+. .++.+|..|.||||+|+..|+.+++++|.+
T Consensus 112 ~~g~ttpLh~A~-~~~~~~~~~~~iv~~Ll~~~ga-d~~~~d~~G~TpL~~A~~~~~~~~v~~L~~ 175 (186)
T 3t8k_A 112 KPYKIVVFKNIF-NYFVDENEMIPLYKLIFSQSGL-QLLIKDKWGLTALEFVKRCQKPIALKMMED 175 (186)
T ss_dssp GGGTBCTTGGGG-GCCSCHHHHHHHHHHHHTSTTC-CTTCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred CCcCchHHHHHH-HcCCChhhHHHHHHHHHHhcCC-CCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 9999 9999999 843 67777 554 468999999999999999999999999975
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.75 E-value=2.5e-18 Score=148.43 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=93.3
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHH
Q 043183 37 AKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDV 111 (564)
Q Consensus 37 ~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~ 111 (564)
+..|+||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+ ..| +.|++.+.+ ++.+|..|+||||+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGAD-INAPDKHHITPLLS 79 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCCTTSSCHHHHHH-HTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc--CCCcCccCCCCCcHHHHHH-HcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHH
Confidence 56789999999999999999999998 5678899999999999999 999 788887755 67889999999999
Q ss_pred HHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCC
Q 043183 112 AASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKN 164 (564)
Q Consensus 112 Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g 164 (564)
|+..|+.+++++|++ .+.+ .+.+|.+|+||||+|+..+
T Consensus 80 A~~~~~~~~v~~Ll~--------------~ga~-~~~~~~~g~t~l~~A~~~~ 117 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLS--------------KGAD-KTVKGPDGLTAFEATDNQA 117 (123)
T ss_dssp HHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHCCCHH
T ss_pred HHHcCCHHHHHHHHH--------------cCCC-CCCcCCCCCCHHHHhCCHH
Confidence 999999999998853 5444 4789999999999996543
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.74 E-value=9.4e-19 Score=167.50 Aligned_cols=119 Identities=22% Similarity=0.250 Sum_probs=103.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHH
Q 043183 3 RSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSML 82 (564)
Q Consensus 3 ~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~A 82 (564)
.+|.||||.||..|+.++++.|++.+.+ + ...|..|.||||+||..|+.++|++|++. .+.+++.+|..|.||||+|
T Consensus 71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 71 ESIDNPLHEAAKRGNLSWLRECLDNRVG-V-NGLDKAGSTALYWACHGGHKDIVEMLFTQ-PNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp EEESCHHHHHHHHTCHHHHHHHHHTTCC-T-TCCCTTSCCHHHHHHHTTCHHHHHHHTTS-TTCCCCCCCTTSCCHHHHH
T ss_pred cccccccccccccCcHHHHHHHHhCCCC-c-cccCCCCCCHHHHHHHcCCHHHHHHHHcC-CCCCccccCCCCCCHHHHH
Confidence 4689999999999999999999998765 3 44688999999999999999999999987 3567899999999999999
Q ss_pred HHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183 83 LHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS 126 (564)
Q Consensus 83 a~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~ 126 (564)
+ ..| +.|++.+.+ ++.+|.+|.||||+|+..|+.++++.|++
T Consensus 148 ~-~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~l~~l~~ 194 (222)
T 3ehr_A 148 A-WKGYADIVQLLLAKGAR-TDLRNIEKKLAFDMATNAACASLLKKKQG 194 (222)
T ss_dssp H-HHTCHHHHHHHHHHTCC-SCCCCTTSCCHHHHCCSHHHHHHHC----
T ss_pred H-HcCCHHHHHHHHHcCCC-CccccCCCCCHHHHhcchhHHHHHHHHhc
Confidence 9 998 888888755 57899999999999999999999998864
No 102
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.73 E-value=3.5e-18 Score=169.66 Aligned_cols=121 Identities=10% Similarity=0.011 Sum_probs=98.4
Q ss_pred CCcHHHHHHHhch-----HHHHhcCccc-----ccccCCCCCcHHHHHHHc---CCCchHHHHHHcccCCHHHHHHHHHc
Q 043183 75 GGTALSMLLHLEG-----RVMMKHNRSI-----AMVRDHNQTLPIDVAASL---GHKDMPICMVSMNMLLPDVALQLCRD 141 (564)
Q Consensus 75 G~TpLH~Aa~~~G-----~~Ll~~~~~~-----~~~~d~~G~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~~i~~~Ll~~ 141 (564)
..++||.|+ ..| +.++..+.+. .+..|..|+||||+|+.. |+.+++++|+ +.
T Consensus 130 ~l~~l~~a~-~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll--------------~~ 194 (278)
T 1dcq_A 130 KLHSLCEAV-KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV--------------QN 194 (278)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHH--------------HH
T ss_pred hhhhhhhHh-hhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHH--------------HC
Confidence 356899999 888 5566766654 344588899999999998 7888888875 45
Q ss_pred CCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhc
Q 043183 142 RPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLIS 221 (564)
Q Consensus 142 ~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~ 221 (564)
+.+ ++.+|.+|+||||+|+..|+. ++++.|++ .+++++.+|.
T Consensus 195 ga~-in~~d~~g~TpLh~A~~~g~~--------------------------------~~v~~Ll~-----~gad~~~~d~ 236 (278)
T 1dcq_A 195 SGN-LDKQTGKGSTALHYCCLTDNA--------------------------------ECLKLLLR-----GKASIEIANE 236 (278)
T ss_dssp CSC-TTCCCTTCCCHHHHHHHTTCH--------------------------------HHHHHHHH-----TTCCTTCCCT
T ss_pred CCC-ccccCCCCCCHHHHHHHcCCH--------------------------------HHHHHHHH-----cCCCCCCccC
Confidence 544 478999999999999999964 56666654 5667889999
Q ss_pred CCchHHHHHHHcCCHHHHHHHHHhCCC
Q 043183 222 KPGALIFDAAKQGNVGFLLILTREYPN 248 (564)
Q Consensus 222 ~G~TpLh~Aa~~g~~~iv~~LL~~~~~ 248 (564)
+|.||||+|+..|+.+++++|++++++
T Consensus 237 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 237 SGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999998544
No 103
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.72 E-value=3.1e-18 Score=163.89 Aligned_cols=146 Identities=16% Similarity=0.112 Sum_probs=114.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCc-------------cccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccc
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYE-------------GEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDL 68 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~-------------~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l 68 (564)
++.+.++.+++.+.|+...+..+.+.+- .......+.+|.||||+||..|+.++|++|++. +.++
T Consensus 22 d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~ 99 (222)
T 3ehr_A 22 TFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDN--RVGV 99 (222)
T ss_dssp CCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHT--TCCT
T ss_pred CcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhC--CCCc
Confidence 4566677777777777544433322110 001122356789999999999999999999997 6678
Q ss_pred cCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCC
Q 043183 69 AKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRP 143 (564)
Q Consensus 69 ~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~ 143 (564)
+.+|..|.||||+|+ ..| +.|++..+..++.+|..|+||||+|+..|+.+++++|++ .+.
T Consensus 100 ~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~--------------~ga 164 (222)
T 3ehr_A 100 NGLDKAGSTALYWAC-HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA--------------KGA 164 (222)
T ss_dssp TCCCTTSCCHHHHHH-HTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHH--------------HTC
T ss_pred cccCCCCCCHHHHHH-HcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH--------------cCC
Confidence 899999999999999 999 788887455678899999999999999999999999864 544
Q ss_pred ccccccCCCCCcHHHHHHhCCC
Q 043183 144 KLATLRAGDCETPLHALARKNL 165 (564)
Q Consensus 144 ~~~~~~d~~G~TpLh~Aa~~g~ 165 (564)
+ ++.+|.+|.||||+|+..+.
T Consensus 165 ~-~~~~~~~g~t~l~~A~~~~~ 185 (222)
T 3ehr_A 165 R-TDLRNIEKKLAFDMATNAAC 185 (222)
T ss_dssp C-SCCCCTTSCCHHHHCCSHHH
T ss_pred C-CccccCCCCCHHHHhcchhH
Confidence 4 47899999999999998773
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.71 E-value=2.2e-17 Score=170.08 Aligned_cols=143 Identities=15% Similarity=0.104 Sum_probs=105.2
Q ss_pred CCCcHHHHHHHc-CCHHHHHHHHHhCccccccccC--CCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHH
Q 043183 4 SRRLQTYRAALN-GDWAVAKSIYDVYEGEIGIAIA--KRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALS 80 (564)
Q Consensus 4 ~g~t~Lh~Aa~~-G~~~~v~~Ll~~~~~~l~~~~~--~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH 80 (564)
.+.|+||.|+.. |+.++++.|++.+.+. ...+ ..|.||||+|+..|+.++|++|++. +.+++.+|..|.||||
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv--n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~--Gadvn~~d~~G~TpLh 273 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADV--NWVNGGQDNATPLIQATAANSLLACEFLLQN--GANVNQADSAGRGPLH 273 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCC--CccccccCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHH
Confidence 456899999999 9999999999987763 2234 7899999999999999999999998 6788999999999999
Q ss_pred HHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCc
Q 043183 81 MLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCET 155 (564)
Q Consensus 81 ~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~T 155 (564)
+|+ ..| +.|++.+.+ ++.+|.+|.||||+|+..|+.+++++|+.. ..........+..+.|
T Consensus 274 ~A~-~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~------------~~~~~~~~~~~~~~~t 339 (368)
T 3jue_A 274 HAT-ILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLA------------KMREAEAAQGQAGDET 339 (368)
T ss_dssp HHH-HHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH------------HC--------------
T ss_pred HHH-HcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHc------------CCCcccccccCCCCCC
Confidence 999 998 888888755 588899999999999999999999999751 1122222455677889
Q ss_pred HHHHHHhCC
Q 043183 156 PLHALARKN 164 (564)
Q Consensus 156 pLh~Aa~~g 164 (564)
+++.+....
T Consensus 340 ~l~i~~~~~ 348 (368)
T 3jue_A 340 YLDIFRDFS 348 (368)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 999887654
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.71 E-value=1.7e-17 Score=164.74 Aligned_cols=117 Identities=19% Similarity=0.188 Sum_probs=104.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCcccc----ccccCCCCChHHHHHHhc---CCHHHHHHHHHcCCcccccCCCCCCCcH
Q 043183 6 RLQTYRAALNGDWAVAKSIYDVYEGEI----GIAIAKRGDTALRIAAAG---KYIEFLKELVKIMEAEDLAKPNKHGGTA 78 (564)
Q Consensus 6 ~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l----~~~~~~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~~~l~~~d~~G~Tp 78 (564)
.++||.|+..|+.+.++.+++.+.+.. ....+..|.||||+|+.. |+.+++++|++. +.+++.+|..|.||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~--ga~in~~d~~g~Tp 208 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGSTA 208 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCCCH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC--CCCccccCCCCCCH
Confidence 468999999999999999999877632 133478899999999999 999999999999 67899999999999
Q ss_pred HHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183 79 LSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS 126 (564)
Q Consensus 79 LH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~ 126 (564)
||+|+ ..| +.|++.+.+ ++.+|.+|.||||+|+..|+.+++++|++
T Consensus 209 Lh~A~-~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~ 259 (278)
T 1dcq_A 209 LHYCC-LTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQ 259 (278)
T ss_dssp HHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHH-HcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 99999 999 888887765 68899999999999999999999999964
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.69 E-value=4e-17 Score=133.51 Aligned_cols=93 Identities=19% Similarity=0.273 Sum_probs=78.3
Q ss_pred CCCcHHHHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHh
Q 043183 104 NQTLPIDVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCF 183 (564)
Q Consensus 104 ~G~TpLh~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~ 183 (564)
+|+||||+|+..|+.+++++|++ .+.+ ++.+|.+|+||||+|+..|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~--------------~g~~-~n~~d~~g~t~L~~A~~~~~~----------------- 48 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE--------------AGAD-VNAKDKNGRTPLHLAARNGHL----------------- 48 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHTTCH-----------------
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH--------------cCCC-CcccCCCCCCHHHHHHHcCCH-----------------
Confidence 48999999999999999999863 4444 478999999999999999964
Q ss_pred hhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcCCHHHHHHHHHhCCC
Q 043183 184 NLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQGNVGFLLILTREYPN 248 (564)
Q Consensus 184 ~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~LL~~~~~ 248 (564)
++++.|++ .+.+++.+|.+|+||||+|+..|+.+++++|+++|++
T Consensus 49 ---------------~~v~~Ll~-----~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 49 ---------------EVVKLLLE-----AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp ---------------HHHHHHHH-----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ---------------HHHHHHHH-----cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 56666654 3567888999999999999999999999999998874
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=8.3e-17 Score=173.20 Aligned_cols=116 Identities=15% Similarity=0.159 Sum_probs=102.7
Q ss_pred CcHHHHHHHcCCHHHHHHHHHhCcccccc-----ccCCCCChHHHHHHh---cCCHHHHHHHHHcCCcccccCCCCCCCc
Q 043183 6 RLQTYRAALNGDWAVAKSIYDVYEGEIGI-----AIAKRGDTALRIAAA---GKYIEFLKELVKIMEAEDLAKPNKHGGT 77 (564)
Q Consensus 6 ~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~-----~~~~~g~TpLh~Aa~---~g~~~iv~~Ll~~~~~~~l~~~d~~G~T 77 (564)
.+.||.|+..|+.+.++.|++.+.+. +. ..+..|.||||+||. .|+.++|++|++. +.+++.+|..|+|
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~--ga~vn~~d~~g~T 209 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNT 209 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH--SCCTTCCCSSSCC
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc--CCCCCccCCCCCc
Confidence 36799999999999999999998652 11 127789999999976 9999999999998 6789999999999
Q ss_pred HHHHHHHhch-----HHHHhcCcccccccCCCCCcHHHHHHHcCCCchHHHHHH
Q 043183 78 ALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPIDVAASLGHKDMPICMVS 126 (564)
Q Consensus 78 pLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~iv~~Ll~ 126 (564)
|||+|+ ..| +.|++.+.+ ++.+|.+|+||||+|+..|+.+++++|++
T Consensus 210 pLh~A~-~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~ 261 (497)
T 3lvq_E 210 ALHYAA-LYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQ 261 (497)
T ss_dssp HHHHHT-TTTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHH-HcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999999 999 888888765 68889999999999999999999999864
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=7.9e-17 Score=173.36 Aligned_cols=130 Identities=12% Similarity=0.044 Sum_probs=89.9
Q ss_pred cHHHHHHHhch-----HHHHhcCcccccc------cCCCCCcHHHHHHH---cCCCchHHHHHHcccCCHHHHHHHHHcC
Q 043183 77 TALSMLLHLEG-----RVMMKHNRSIAMV------RDHNQTLPIDVAAS---LGHKDMPICMVSMNMLLPDVALQLCRDR 142 (564)
Q Consensus 77 TpLH~Aa~~~G-----~~Ll~~~~~~~~~------~d~~G~TpLh~Aa~---~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~ 142 (564)
+.||.|+ ..| +.|++.+.+. +. .|..|+||||+||. .|+.+++++|+ +.+
T Consensus 134 ~~L~~A~-~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll--------------~~g 197 (497)
T 3lvq_E 134 QRLWTAI-CNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII--------------QNG 197 (497)
T ss_dssp HHHHHHH-HHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHH--------------HHS
T ss_pred HHHHHHH-hccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHH--------------HcC
Confidence 5566666 666 5555555432 22 26678888888865 78888888875 455
Q ss_pred CccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCcHHHHHHhHHHHHHHHHHhhccCChhhHhhhhcC
Q 043183 143 PKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAEDVEVQRLQALKLVERLCGKVALLSDSEISRLISK 222 (564)
Q Consensus 143 ~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~ 222 (564)
.+ ++.+|.+|+||||+|+..|+. ++++.|++ .+++++.+|..
T Consensus 198 a~-vn~~d~~g~TpLh~A~~~g~~--------------------------------~~v~~Ll~-----~ga~~~~~d~~ 239 (497)
T 3lvq_E 198 GH-LDAKAADGNTALHYAALYNQP--------------------------------DCLKLLLK-----GRALVGTVNEA 239 (497)
T ss_dssp CC-TTCCCSSSCCHHHHHTTTTCH--------------------------------HHHHHHHH-----TCCCCSCCCTT
T ss_pred CC-CCccCCCCCcHHHHHHHcCCH--------------------------------HHHHHHHH-----cCCCCCCcCCC
Confidence 44 488999999999999999954 56666654 46678889999
Q ss_pred CchHHHHHHHcCCHHHHHHHHHhCCCcccccccccchHHHhhcCCchHHHHHhc
Q 043183 223 PGALIFDAAKQGNVGFLLILTREYPNLHISYRRFESSGAHLQTRNNILHLAAML 276 (564)
Q Consensus 223 G~TpLh~Aa~~g~~~iv~~LL~~~~~~~~~~~r~~~i~n~~~~G~TpLhlAa~~ 276 (564)
|.||||+|+..|+.+++++|+++|++. ..||+|.+...
T Consensus 240 g~tpl~~A~~~~~~~~~~~Ll~~ga~~----------------~~~~~h~~~~~ 277 (497)
T 3lvq_E 240 GETALDIARKKHHKECEELLEQAQAGT----------------FAFPLHVDYSW 277 (497)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTCC-----------------------------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhCCCC----------------CCCcceeeccc
Confidence 999999999999999999999999886 33788887643
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.67 E-value=1.4e-16 Score=163.93 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=99.8
Q ss_pred CCCChHHHHHHhc-CCHHHHHHHHHcCCcccccCCC--CCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHH
Q 043183 38 KRGDTALRIAAAG-KYIEFLKELVKIMEAEDLAKPN--KHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPI 109 (564)
Q Consensus 38 ~~g~TpLh~Aa~~-g~~~iv~~Ll~~~~~~~l~~~d--~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpL 109 (564)
..+.|+||.|+.. |+.++++.|++. +.+++..| ..|.||||+|+ ..| +.|++.+.+ ++.+|..|+|||
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa-~~g~~~iv~~LL~~Gad-vn~~d~~G~TpL 272 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQAT-AANSLLACEFLLQNGAN-VNQADSAGRGPL 272 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHH-HCCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence 3457899999999 999999999998 56777777 89999999999 898 888888755 578899999999
Q ss_pred HHHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcHHHHHHhCCCCCcccccccccchHHHHhhhcCCc
Q 043183 110 DVAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETPLHALARKNLTSSNFINQNQRGIFRRCFNLGAED 189 (564)
Q Consensus 110 h~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~TpLh~Aa~~g~~~~~f~~~~~~~~~~~~~~~~~~h 189 (564)
|+|+..|+.+++++|++ .+.+ ++.+|.+|.||||+|+..|+.
T Consensus 273 h~A~~~g~~~~v~~LL~--------------~Gad-~~~~d~~G~TpL~~A~~~g~~----------------------- 314 (368)
T 3jue_A 273 HHATILGHTGLACLFLK--------------RGAD-LGARDSEGRDPLTIAMETANA----------------------- 314 (368)
T ss_dssp HHHHHHTCHHHHHHHHH--------------TTCC-TTCCCTTSCCHHHHHHHTTCH-----------------------
T ss_pred HHHHHcCcHHHHHHHHH--------------CcCC-CCCcCCCCCCHHHHHHHCCCH-----------------------
Confidence 99999999999998863 4444 478899999999999999954
Q ss_pred HHHHHHhHHHHHHHHHHhhccCChhhHhhhhcCCchHHHHHHHcC
Q 043183 190 VEVQRLQALKLVERLCGKVALLSDSEISRLISKPGALIFDAAKQG 234 (564)
Q Consensus 190 ~~v~~~~~~~lv~~l~~~~l~~~~~~~~~~d~~G~TpLh~Aa~~g 234 (564)
++++.|.... ....+....+..+.|+++++....
T Consensus 315 ---------~iv~lLl~~~--~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 315 ---------DIVTLLRLAK--MREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp ---------HHHHHHHHHH--C-----------------------
T ss_pred ---------HHHHHHHHcC--CCcccccccCCCCCCHHHHHHHHH
Confidence 5666665432 233344455667788988876654
No 110
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.66 E-value=3e-16 Score=128.25 Aligned_cols=79 Identities=29% Similarity=0.331 Sum_probs=53.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHH
Q 043183 4 SRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLL 83 (564)
Q Consensus 4 ~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa 83 (564)
+|+||||.|+..|+.++++.|++.+.+. ...|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~--n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV--NAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHH
Confidence 3677777777777777777777766542 33566777777777777777777777776 4556666666666666666
Q ss_pred Hhch
Q 043183 84 HLEG 87 (564)
Q Consensus 84 ~~~G 87 (564)
..|
T Consensus 77 -~~~ 79 (93)
T 1n0q_A 77 -RNG 79 (93)
T ss_dssp -HTT
T ss_pred -HcC
Confidence 555
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.60 E-value=8.6e-16 Score=130.65 Aligned_cols=101 Identities=21% Similarity=0.218 Sum_probs=85.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|.+|.||||.||..|+.++++.|++.+.+. ...|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~--~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV--NARSKDGNTPLHLAAKNGHAEIVKLLLAK--GADVNARSKDGNTPEHL 81 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCS--SCCCSSSCCTTHHHHTTTCHHHHHHHTTT--TCCTTCCCTTCCCTTHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CCcCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCCHHHH
Confidence 568999999999999999999999887652 44688899999999999999999999988 66788899999999999
Q ss_pred HHHhch-----HHHHhcCcccccccCCCCCcH
Q 043183 82 LLHLEG-----RVMMKHNRSIAMVRDHNQTLP 108 (564)
Q Consensus 82 Aa~~~G-----~~Ll~~~~~~~~~~d~~G~Tp 108 (564)
|+ ..| +.|++.+.+ ++.++..|.||
T Consensus 82 A~-~~~~~~~~~~Ll~~ga~-~n~~~~~~~~~ 111 (115)
T 2l6b_A 82 AK-KNGHHEIVKLLDAKGAD-VNARSWGSSHH 111 (115)
T ss_dssp HH-TTTCHHHHHHHHTTSSS-HHHHSCCCC--
T ss_pred HH-HCCCHHHHHHHHHcCCC-CCcCCcccccc
Confidence 99 888 777877755 57778888877
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.60 E-value=7.3e-16 Score=131.09 Aligned_cols=102 Identities=21% Similarity=0.289 Sum_probs=87.7
Q ss_pred cCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHHH
Q 043183 36 IAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPID 110 (564)
Q Consensus 36 ~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpLh 110 (564)
.|.+|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+ ..| +.|++.+.+ ++.+|..|.||||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~-~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~ 80 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAA-KNGHAEIVKLLLAKGAD-VNARSKDGNTPEH 80 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTT--TCCSSCCCSSSCCTTHHHH-TTTCHHHHHHHTTTTCC-TTCCCTTCCCTTH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHH-HcCcHHHHHHHHHcCCC-CcccCCCCCCHHH
Confidence 588999999999999999999999988 5678899999999999999 998 788887655 5788999999999
Q ss_pred HHHHcCCCchHHHHHHcccCCHHHHHHHHHcCCccccccCCCCCcH
Q 043183 111 VAASLGHKDMPICMVSMNMLLPDVALQLCRDRPKLATLRAGDCETP 156 (564)
Q Consensus 111 ~Aa~~g~~~iv~~Ll~~~~~~~~i~~~Ll~~~~~~~~~~d~~G~Tp 156 (564)
+|+..|+.+++++|++ ++.+ ++.++..|.||
T Consensus 81 ~A~~~~~~~~~~~Ll~--------------~ga~-~n~~~~~~~~~ 111 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDA--------------KGAD-VNARSWGSSHH 111 (115)
T ss_dssp HHHTTTCHHHHHHHHT--------------TSSS-HHHHSCCCC--
T ss_pred HHHHCCCHHHHHHHHH--------------cCCC-CCcCCcccccc
Confidence 9999999999998863 4444 47788888887
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.52 E-value=1.9e-14 Score=121.55 Aligned_cols=86 Identities=17% Similarity=0.253 Sum_probs=66.6
Q ss_pred ccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHHHHHhch-----HHHHhcCcccccccCCCCCcHH
Q 043183 35 AIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSMLLHLEG-----RVMMKHNRSIAMVRDHNQTLPI 109 (564)
Q Consensus 35 ~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~Aa~~~G-----~~Ll~~~~~~~~~~d~~G~TpL 109 (564)
..+.+|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+ ..| +.|++.+.+ ++.+|..|+|||
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~-~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl 94 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDKNGSTPLHLAA-RNGHLEVVKLLLEAGAD-VXAQDKFGKTAF 94 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHH-HTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHH-HcCCHHHHHHHHHcCCC-ccccccCCCcHH
Confidence 3577788888888888888888888877 5677778888888888888 777 777777644 567788888888
Q ss_pred HHHHHcCCCchHHHH
Q 043183 110 DVAASLGHKDMPICM 124 (564)
Q Consensus 110 h~Aa~~g~~~iv~~L 124 (564)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 888888888888875
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.49 E-value=5.9e-14 Score=118.45 Aligned_cols=81 Identities=23% Similarity=0.265 Sum_probs=73.1
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccccCCCCCCCcHHHH
Q 043183 2 TRSRRLQTYRAALNGDWAVAKSIYDVYEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDLAKPNKHGGTALSM 81 (564)
Q Consensus 2 ~~~g~t~Lh~Aa~~G~~~~v~~Ll~~~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l~~~d~~G~TpLH~ 81 (564)
|.+|.||||.|+..|+.++++.|++.+.+ + ...|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANGAD-V-AAKDKNGSTPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTAFDI 96 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTTCC-T-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcCCC-C-CccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccccCCCcHHHH
Confidence 56799999999999999999999998765 3 44588999999999999999999999998 67889999999999999
Q ss_pred HHHhch
Q 043183 82 LLHLEG 87 (564)
Q Consensus 82 Aa~~~G 87 (564)
|+ ..|
T Consensus 97 A~-~~~ 101 (110)
T 2zgd_A 97 SI-DNG 101 (110)
T ss_dssp HH-HHT
T ss_pred HH-HcC
Confidence 99 887
No 115
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=31.02 E-value=2.3e+02 Score=27.08 Aligned_cols=9 Identities=11% Similarity=0.261 Sum_probs=3.3
Q ss_pred HHHHHhhhh
Q 043183 347 TLIATVVFV 355 (564)
Q Consensus 347 ~LiatvtFa 355 (564)
++|..+++.
T Consensus 210 ~li~~ls~~ 218 (321)
T 3tlw_A 210 LFILFISWT 218 (321)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHhhe
Confidence 333333333
No 116
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=28.00 E-value=1.5e+02 Score=28.91 Aligned_cols=76 Identities=8% Similarity=-0.011 Sum_probs=39.9
Q ss_pred HHHHHHHcCCHHHHHHHHHh-CccccccccCCCCChHHHHHHhcCCHHHHHHHHHcCCcccc-cCCCCCCCcHHHHHH
Q 043183 8 QTYRAALNGDWAVAKSIYDV-YEGEIGIAIAKRGDTALRIAAAGKYIEFLKELVKIMEAEDL-AKPNKHGGTALSMLL 83 (564)
Q Consensus 8 ~Lh~Aa~~G~~~~v~~Ll~~-~~~~l~~~~~~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~~~l-~~~d~~G~TpLH~Aa 83 (564)
.|......++.+..+.+.+. .+....-..|..|...+--..+.+..+....+++...+.-. -..|..|.-.+.-+.
T Consensus 40 ~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~l 117 (351)
T 3gvo_A 40 FIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKAL 117 (351)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHH
Confidence 34444555665555555544 22222223477777777777777777776666665432211 123445544444444
No 117
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=20.77 E-value=63 Score=20.48 Aligned_cols=16 Identities=25% Similarity=0.243 Sum_probs=10.7
Q ss_pred HHHHHHcCCHHHHHHH
Q 043183 9 TYRAALNGDWAVAKSI 24 (564)
Q Consensus 9 Lh~Aa~~G~~~~v~~L 24 (564)
+..||..||.+.++.|
T Consensus 17 iyvA~seGd~etv~~L 32 (40)
T 1gp8_A 17 MDAAASKGDVETYRKL 32 (40)
T ss_dssp HHHHHTTSCHHHHHHH
T ss_pred HHHHHhcCCHHHHHHH
Confidence 4566777777777665
Done!