Query 043184
Match_columns 270
No_of_seqs 249 out of 1198
Neff 4.2
Searched_HMMs 29240
Date Tue Mar 26 00:15:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 3.1E-25 1.1E-29 163.5 5.7 62 91-152 1-63 (63)
2 3igm_B PF14_0633 protein; AP2 88.1 0.28 9.6E-06 37.4 2.6 26 88-113 3-29 (77)
3 1u3e_M HNH homing endonuclease 80.1 0.29 1E-05 40.8 -0.5 38 93-133 109-146 (174)
4 1z1b_A Integrase; protein-DNA 69.3 5.9 0.0002 34.3 5.1 42 94-139 14-55 (356)
5 3jtz_A Integrase; four strande 48.7 14 0.00048 27.8 3.3 43 97-139 29-75 (88)
6 1x60_A Sporulation-specific N- 44.2 11 0.00038 26.7 2.0 24 114-137 45-68 (79)
7 1uta_A FTSN, MSGA, cell divisi 42.9 17 0.00057 26.2 2.8 32 106-137 37-68 (81)
8 1b69_A Protein (integrase); in 29.2 56 0.0019 24.2 3.7 31 89-119 8-39 (69)
9 3ju0_A Phage integrase; four s 23.7 52 0.0018 25.6 2.9 47 97-143 29-80 (108)
10 1kcq_A Gelsolin, brevin, ADF, 21.7 1E+02 0.0036 23.0 4.2 37 102-138 27-63 (104)
11 3ukw_C Bimax1 peptide; arm rep 21.6 29 0.001 21.3 0.8 14 2-15 4-17 (28)
12 2ftc_I Mitochondrial ribosomal 21.4 1E+02 0.0035 24.5 4.3 36 103-140 79-114 (118)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.91 E-value=3.1e-25 Score=163.46 Aligned_cols=62 Identities=77% Similarity=1.345 Sum_probs=58.0
Q ss_pred CceeeEEeCCCCcEEEEEeCCCC-CceEecCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCCCc
Q 043184 91 RHYRGVRQRPWGKWAAEIRDPKK-AARVWLGTFETAEDAAMAYDKAALKFKGTKAKLNFPERV 152 (270)
Q Consensus 91 S~YRGVr~r~~GKW~A~I~~~~k-gkri~LGtFdT~EEAArAYD~AA~~l~G~~A~lNFP~~~ 152 (270)
.+||||++++||||+|+|+++.+ |++||||+|+|+||||+|||.|+++++|.++++|||+++
T Consensus 1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~ 63 (63)
T 1gcc_A 1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV 63 (63)
T ss_dssp CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence 37999988889999999999864 789999999999999999999999999999999999864
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=88.12 E-value=0.28 Score=37.44 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=21.3
Q ss_pred CCCCceeeE-EeCCCCcEEEEEeCCCC
Q 043184 88 TRRRHYRGV-RQRPWGKWAAEIRDPKK 113 (270)
Q Consensus 88 ~~tS~YRGV-r~r~~GKW~A~I~~~~k 113 (270)
..+|+|+|| |.+..+.|.|.-.+.++
T Consensus 3 ~~~Sg~pGVsw~kR~~~WlA~W~e~g~ 29 (77)
T 3igm_B 3 HMSSGYPGVSWNKRMCAWLAFFYDGAS 29 (77)
T ss_dssp -CCSSSTTEEEETTTTEEEEEEEETTE
T ss_pred CCCCCCCcEEeecCCceEEEEEecCCe
Confidence 468999999 77788999999997743
No 3
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=80.13 E-value=0.29 Score=40.77 Aligned_cols=38 Identities=5% Similarity=-0.129 Sum_probs=29.4
Q ss_pred eeeEEeCCCCcEEEEEeCCCCCceEecCCCCCHHHHHHHHH
Q 043184 93 YRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYD 133 (270)
Q Consensus 93 YRGVr~r~~GKW~A~I~~~~kgkri~LGtFdT~EEAArAYD 133 (270)
++||.....++|.+.|... + .++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~~-~--~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVIS-P--DGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEEC-T--TSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEEc-C--CceEEeeCCHHHHHHHHC
Confidence 5677333346799999876 4 677999999999999964
No 4
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=69.35 E-value=5.9 Score=34.29 Aligned_cols=42 Identities=14% Similarity=0.064 Sum_probs=29.8
Q ss_pred eeEEeCCCCcEEEEEeCCCCCceEecCCCCCHHHHHHHHHHHHHHh
Q 043184 94 RGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKF 139 (270)
Q Consensus 94 RGVr~r~~GKW~A~I~~~~kgkri~LGtFdT~EEAArAYD~AA~~l 139 (270)
.||++++.|+|..++... |+++.+|. |..||..+..++...+
T Consensus 14 ~~v~~~~~g~~~~r~~~~--gk~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 14 PNLYIRNNGYYCYRDPRT--GKEFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TTEEEETTTEEEEECTTT--CCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred ccceecCCCeEEEEeecC--CeEEECCC--CHHHHHHHHHHHHHHH
Confidence 368777789999887644 45889996 8888876665544433
No 5
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=48.65 E-value=14 Score=27.79 Aligned_cols=43 Identities=23% Similarity=0.376 Sum_probs=32.3
Q ss_pred EeCCCC--cEEEEEeCCCCCceEecCCCC--CHHHHHHHHHHHHHHh
Q 043184 97 RQRPWG--KWAAEIRDPKKAARVWLGTFE--TAEDAAMAYDKAALKF 139 (270)
Q Consensus 97 r~r~~G--KW~A~I~~~~kgkri~LGtFd--T~EEAArAYD~AA~~l 139 (270)
+-.+.| .|.-+.+..+|.+++-||.|. |.++|....+++...+
T Consensus 29 ~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 29 LVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 444443 599998888888889999997 5888877777666555
No 6
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=44.19 E-value=11 Score=26.72 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=19.3
Q ss_pred CceEecCCCCCHHHHHHHHHHHHH
Q 043184 114 AARVWLGTFETAEDAAMAYDKAAL 137 (270)
Q Consensus 114 gkri~LGtFdT~EEAArAYD~AA~ 137 (270)
-.+|++|.|.+.++|..+-++...
T Consensus 45 ~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 45 LYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHHH
Confidence 358999999999999988765444
No 7
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=42.89 E-value=17 Score=26.17 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=22.5
Q ss_pred EEEeCCCCCceEecCCCCCHHHHHHHHHHHHH
Q 043184 106 AEIRDPKKAARVWLGTFETAEDAAMAYDKAAL 137 (270)
Q Consensus 106 A~I~~~~kgkri~LGtFdT~EEAArAYD~AA~ 137 (270)
+.|...+.-.||.+|-|.+.++|..+-++...
T Consensus 37 a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 37 SKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp EEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred eEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 34443334458999999999999888765544
No 8
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=29.16 E-value=56 Score=24.16 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=23.3
Q ss_pred CCCceeeEEeCCCCcEEEEEeCC-CCCceEec
Q 043184 89 RRRHYRGVRQRPWGKWAAEIRDP-KKAARVWL 119 (270)
Q Consensus 89 ~tS~YRGVr~r~~GKW~A~I~~~-~kgkri~L 119 (270)
...-+.|+.++..|+|+.++.+. ++.+.||-
T Consensus 8 gr~L~~GesqR~dG~Y~yry~d~~Gkr~~vYs 39 (69)
T 1b69_A 8 GRILKTGESQRKDGRYLYKYIDSFGEPQFVYS 39 (69)
T ss_dssp SSCCCTTEEECSSSCEEEEEECTTSSEEEEEE
T ss_pred CCccCCCeEEccCCcEEEEEEcCCCCEEEEEe
Confidence 45667899999999999999986 44444543
No 9
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=23.67 E-value=52 Score=25.59 Aligned_cols=47 Identities=28% Similarity=0.349 Sum_probs=32.9
Q ss_pred EeCCCC--cEEEEEeCCCCCceEecCCCC--CHHHHHHHHHHHHHHh-cCCC
Q 043184 97 RQRPWG--KWAAEIRDPKKAARVWLGTFE--TAEDAAMAYDKAALKF-KGTK 143 (270)
Q Consensus 97 r~r~~G--KW~A~I~~~~kgkri~LGtFd--T~EEAArAYD~AA~~l-~G~~ 143 (270)
+-.+.| .|.-+.+..+|.+++-||.|. |..+|....+++...+ .|.+
T Consensus 29 ~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l~~GiD 80 (108)
T 3ju0_A 29 LVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLLAAGID 80 (108)
T ss_dssp EECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred EEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHHHcCCC
Confidence 444444 599998888888889999996 4777777666655544 3444
No 10
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=21.69 E-value=1e+02 Score=23.04 Aligned_cols=37 Identities=14% Similarity=0.038 Sum_probs=30.1
Q ss_pred CcEEEEEeCCCCCceEecCCCCCHHHHHHHHHHHHHH
Q 043184 102 GKWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALK 138 (270)
Q Consensus 102 GKW~A~I~~~~kgkri~LGtFdT~EEAArAYD~AA~~ 138 (270)
..--+.|.+.+..-.+|.|...+..|.++|-+.|...
T Consensus 27 ns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 27 NNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp CTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3445778887777889999999999999999887544
No 11
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=21.61 E-value=29 Score=21.29 Aligned_cols=14 Identities=43% Similarity=0.700 Sum_probs=9.2
Q ss_pred CCCCCCCCCCCCCC
Q 043184 2 HRRHGKRPLPLEAS 15 (270)
Q Consensus 2 ~~~~~~~~~~~~~~ 15 (270)
.||--||||-||+.
T Consensus 4 rrrprkrplewded 17 (28)
T 3ukw_C 4 RRRPRKRPLEWDED 17 (28)
T ss_dssp ---CCCCCCCCCGG
T ss_pred ccccccCCcccccc
Confidence 36778999999943
No 12
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=21.40 E-value=1e+02 Score=24.49 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=26.6
Q ss_pred cEEEEEeCCCCCceEecCCCCCHHHHHHHHHHHHHHhc
Q 043184 103 KWAAEIRDPKKAARVWLGTFETAEDAAMAYDKAALKFK 140 (270)
Q Consensus 103 KW~A~I~~~~kgkri~LGtFdT~EEAArAYD~AA~~l~ 140 (270)
.|+|+|....- -+-++...+++.|..|..+|+.+|=
T Consensus 79 ~wva~Vk~G~i--lfEi~g~~~~~~a~eAlr~a~~KlP 114 (118)
T 2ftc_I 79 HYVTPVKAGRL--VVEMGGRCEFEEVQGFLDQVAHKLP 114 (118)
T ss_pred EEEEEECCCCE--EEEEeccCCHHHHHHHHHHHHhhCC
Confidence 59999984221 3345555889999999999998874
Done!