BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043188
(197 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 58/138 (42%), Gaps = 25/138 (18%)
Query: 53 LTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDI 112
L +T LHI E V E + C + KG TPLHVAAK+G +
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQAC------MTKKGFTPLHVAAKYGKVRV 161
Query: 113 VRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDP 172
+L+ER P A + + T LH AV H N+D+V+LL
Sbjct: 162 AELLLERDAHPN----------AAGKNGL--------TPLHVAVHHNNLDIVKLLLPRGG 203
Query: 173 DYQYSANNYGKTPLYMAA 190
A N G TPL++AA
Sbjct: 204 SPHSPAWN-GYTPLHIAA 220
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 18/115 (15%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLVE-RAKLPQHENEE-----LESRVGAARQMIRMTNNE 147
N K +TPLH+AA+ GH+++ + L++ +AK+ ++ +R+G + + N
Sbjct: 44 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 103
Query: 148 KN---------TALHEAVCHQNVD-VVELLTKEDPDYQYSANNYGKTPLYMAADY 192
N T LH A +V+ V+ LL KE Q G TPL++AA Y
Sbjct: 104 ANPNLATTAGHTPLHIAAREGHVETVLALLEKE--ASQACMTKKGFTPLHVAAKY 156
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELES------RVGAARQMIRMTNN------ 146
TPLHVA+ GH IV+ L++R P N ++E+ R G + N
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 147 ---EKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
+ T LH A + ++V+LL + + + A G TPL++AA
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLLENNANPNL-ATTAGHTPLHIAA 121
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 18/111 (16%)
Query: 96 KGDTPLHVAAKFGHSDIVRVLVER----------AKLPQHENEELESRVGAARQMIR--- 142
+G TPLH+AA+ GH+++V +L+ + P H + E V A +I+
Sbjct: 244 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ-EGHVPVADVLIKHGV 302
Query: 143 ---MTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
T T LH A + N+ +V+ L + D + G +PL+ AA
Sbjct: 303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN-AKTKLGYSPLHQAA 352
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 21/112 (18%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENE-ELESRVGAA 137
VA++L K ++ G TPLHVA+ +G+ +V+ L+ QH+ + ++++G
Sbjct: 293 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL------QHQADVNAKTKLG-- 344
Query: 138 RQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA 189
+ LH+A + D+V LL K +++ G TPL +A
Sbjct: 345 -----------YSPLHQAAQQGHTDIVTLLLKNGASPNEVSSD-GTTPLAIA 384
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 85 KCPSLLLQ----VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA 137
K LLQ VNAK G +PLH AA+ GH+DIV +L++ P + + + + A
Sbjct: 325 KLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384
Query: 138 RQM 140
+++
Sbjct: 385 KRL 387
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 16/111 (14%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEE------LESRVGAARQMIRMTNNEKN- 149
G TPLH+AAK ++ R L++ E+ + L ++ G A + + + + N
Sbjct: 212 GYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271
Query: 150 --------TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
T LH +V V ++L K + G TPL++A+ Y
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD-ATTRMGYTPLHVASHY 321
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 19/96 (19%)
Query: 96 KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEA 155
+G TPLH+AA GH +IV VL++ ++ +R + + T LH A
Sbjct: 46 QGSTPLHLAAWIGHPEIVEVLLKHGA-------DVNAR-----------DTDGWTPLHLA 87
Query: 156 VCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
+ ++++VE+L K D + + YG TPL++AAD
Sbjct: 88 ADNGHLEIVEVLLKYGADVN-AQDAYGLTPLHLAAD 122
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 22/114 (19%)
Query: 81 EILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA 137
EI+E VNA+ G TPLH+AA GH +IV VL+ + GA
Sbjct: 61 EIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLL---------------KYGAD 105
Query: 138 RQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
+ + T LH A ++++VE+L K D + + +GKT ++ D
Sbjct: 106 ---VNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 155
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERA 120
+ E+L K + + +A G TPLH+AA GH +IV VL++
Sbjct: 95 IVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG 136
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 46.6 bits (109), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 22/103 (21%)
Query: 92 QVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
VNA+ GDTPLH+AA+ GH +IV VL++ GA + +
Sbjct: 39 DVNAEDTYGDTPLHLAARVGHLEIVEVLLKN---------------GADVNALDFSG--- 80
Query: 149 NTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
+T LH A ++++VE+L K D + + G TPL++AAD
Sbjct: 81 STPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAAD 122
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
+ E+L K + + ++ G TPLH+AAK GH +IV VL+ + GA
Sbjct: 62 IVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLL---------------KYGAD- 105
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
+ + +T LH A ++++VE+L K D + + +GKT ++ D
Sbjct: 106 --VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVN-AQDKFGKTAFDISID 155
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 17/113 (15%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLVERAKL----------------PQHENEELESRVGAA 137
+A+G T LH+AAK GH ++V+ L+ ++ ++++ +L + +
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 138 RQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
I + +NE+N LH A VD+ E+L D ++ N +G +PL++AA
Sbjct: 134 GSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAA 185
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 21/117 (17%)
Query: 99 TPLHVAAKFGHSDIVRVLVERAK-------------LPQHENEELES-----RVGAARQM 140
+PLH AA+ GH DI +LV+ + EN LE+ + GA +
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA---L 69
Query: 141 IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
+ + E +T LH A + +VV+ L ++ G TP+ A +Y+ ++
Sbjct: 70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDL 126
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 22/107 (20%)
Query: 51 RLLTAKTKNTILHINIISQERENVSTKF--------VAEILEKCPSLLLQVNAKGDTPLH 102
+LL +K + INI E EN+ + +AEIL L VN GD+PLH
Sbjct: 128 KLLLSKGSD----INIRDNE-ENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH 182
Query: 103 VAAKFGHSDIVRVLVER---AKLPQHENE------ELESRVGAARQM 140
+AA+ D V + + R L E E L S+V +A QM
Sbjct: 183 IAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 24/143 (16%)
Query: 58 KNTILHINIISQERENVSTKFVAEIL--EKC-PSLLLQVNAKGDTPLHVAAKFGHSDIVR 114
+ T LH+ +I+ + E +AE L C P L + +G+TPLH+A + G V
Sbjct: 42 QQTPLHLAVITNQPE------IAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVG 92
Query: 115 VLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDY 174
VL + P +++ TN +T LH A H + +VELL D
Sbjct: 93 VLTQSCTTPH------------LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 140
Query: 175 QYSANNYGKTPLYMAADYRSSNM 197
G+T L++A D ++ ++
Sbjct: 141 NAQEPCNGRTALHLAVDLQNPDL 163
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 88 SLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNE 147
S+L N G T LH+A+ G+ IV +LV +GA N
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVS---------------LGADVNAQEPCNGR 149
Query: 148 KNTALHEAVCHQNVDVVELLTKEDPD 173
TALH AV QN D+V LL K D
Sbjct: 150 --TALHLAVDLQNPDLVSLLLKCGAD 173
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 64/143 (44%), Gaps = 24/143 (16%)
Query: 58 KNTILHINIISQERENVSTKFVAEIL--EKC-PSLLLQVNAKGDTPLHVAAKFGHSDIVR 114
+ T LH+ +I+ + E +AE L C P L + +G+TPLH+A + G V
Sbjct: 45 QQTPLHLAVITNQPE------IAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVG 95
Query: 115 VLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDY 174
VL + P +++ TN +T LH A H + +VELL D
Sbjct: 96 VLTQSCTTPH------------LHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV 143
Query: 175 QYSANNYGKTPLYMAADYRSSNM 197
G+T L++A D ++ ++
Sbjct: 144 NAQEPCNGRTALHLAVDLQNPDL 166
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 88 SLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNE 147
S+L N G T LH+A+ G+ IV +LV +GA N
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLV---------------SLGADVNAQEPCNGR 152
Query: 148 KNTALHEAVCHQNVDVVELLTKEDPD 173
TALH AV QN D+V LL K D
Sbjct: 153 --TALHLAVDLQNPDLVSLLLKCGAD 176
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 22/101 (21%)
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
VNA+ G TPLH+AA FGH +IV VL++ + ++
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNG------------------ADVNAKDSLGV 81
Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
T LH A ++++VE+L K D S +++G TPL++AA
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNAS-DSHGFTPLHLAA 121
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 25/116 (21%)
Query: 79 VAEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG 135
+ E+L K + VNAK G TPLH+AA+ GH +IV VL++
Sbjct: 62 IVEVLLKNGA---DVNAKDSLGVTPLHLAARRGHLEIVEVLLKNG--------------- 103
Query: 136 AARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
+ +++ T LH A ++++VE+L K D + + +GKT ++ D
Sbjct: 104 ---ADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN-AQDKFGKTAFDISID 155
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 44.3 bits (103), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 56/116 (48%), Gaps = 25/116 (21%)
Query: 79 VAEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG 135
+ E+L K + VNAK G TPLH+AA+ GH +IV VL++
Sbjct: 50 IVEVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLK----------------- 89
Query: 136 AARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
A + + + T LH A ++++VE+L K D + + +GKTP +A D
Sbjct: 90 -AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLAID 143
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 43.9 bits (102), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 21/95 (22%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
G TPLH+AAK GH +IV VL+ + GA + +N T LH A
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLL---------------KYGAD---VNAWDNYGATPLHLAA 88
Query: 157 CHQNVDVVELLTKEDPDYQYSANNY-GKTPLYMAA 190
+ ++++VE+L K D +A +Y G TPL++AA
Sbjct: 89 DNGHLEIVEVLLKHGAD--VNAKDYEGFTPLHLAA 121
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 45/82 (54%), Gaps = 4/82 (4%)
Query: 110 SDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTK 169
SD+ + L+E A+ Q + + GA + T+ +T LH A ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNATDWLGHTPLHLAAKTGHLEIVEVLLK 68
Query: 170 EDPDYQYSANNYGKTPLYMAAD 191
D + +NYG TPL++AAD
Sbjct: 69 YGADVN-AWDNYGATPLHLAAD 89
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
Query: 79 VAEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERA 120
+ E+L K + VNAK G TPLH+AA GH +IV VL++
Sbjct: 95 IVEVLLKHGA---DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 25/114 (21%)
Query: 79 VAEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG 135
+ E+L K + VNAK G TPLH+AA+ GH +IV VL++
Sbjct: 50 IVEVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLK----------------- 89
Query: 136 AARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA 189
A + + + T LH A ++++VE+L K D + + +GKTP +A
Sbjct: 90 -AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTPFDLA 141
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 21/92 (22%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLVERAKLP------------------QHENEELESRVG 135
NA PLH+A + GH +V+ L++ P HE L + G
Sbjct: 116 NADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHG 175
Query: 136 AARQMIRMTNNEKNTALHEAVCHQNVDVVELL 167
A+ I +NN+ NTALHEAV ++V VVELL
Sbjct: 176 AS---INASNNKGNTALHEAVIEKHVFVVELL 204
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 19/94 (20%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
G TPLH+AA+ GH ++V++L+E A + + T LH A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE------------------AGADVNAKDKNGRTPLHLAA 43
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
+ +++VV+LL + D N G+TPL++AA
Sbjct: 44 RNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAA 76
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%), Gaps = 3/29 (10%)
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
VNAK G TPLH+AA+ GH ++V++L+E
Sbjct: 94 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 19/94 (20%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
G TPLH+AA+ GH ++V++L+E A + + T LH A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE------------------AGADVNAKDKNGRTPLHLAA 43
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
+ +++VV+LL + D N G+TPL++AA
Sbjct: 44 RNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAA 76
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 23/29 (79%), Gaps = 3/29 (10%)
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
VNAK G TPLH+AA+ GH ++V++L+E
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 19/97 (19%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
++ G TPLH AAK GH +IV++L+ + + +++ T LH
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKG------------------ADVNAKDSDGRTPLH 75
Query: 154 EAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
A + ++V+LL + D + ++ G+TPL+ AA
Sbjct: 76 YAAKEGHKEIVKLLISKGADVN-AKDSDGRTPLHYAA 111
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 25/135 (18%)
Query: 57 TKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVL 116
+ T LH+ I E + E+L K + + + GDTPLH+AA +GH +IV VL
Sbjct: 46 SGKTPLHLAAIKGHLE------IVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 117 VERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQY 176
++ + T+ T LH A ++++VE+L K D
Sbjct: 100 LKNG------------------ADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN- 140
Query: 177 SANNYGKTPLYMAAD 191
+ + +GKT ++ D
Sbjct: 141 AQDKFGKTAFDISID 155
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 47/94 (50%), Gaps = 19/94 (20%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
G TPLH+AA FGH +IV VL++ + + +G T LH A
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGA-----DVNADDSLGV-------------TPLHLAA 88
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
+++VVE+L K D + +N G TPL++AA
Sbjct: 89 DRGHLEVVEVLLKNGADVNANDHN-GFTPLHLAA 121
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 19/113 (16%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
+ E+L K + + ++ G TPLH+AA GH ++V VL++
Sbjct: 62 IVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGA----------------- 104
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
+ ++ T LH A ++++VE+L K D + + +GKT ++ D
Sbjct: 105 -DVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 155
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 19/96 (19%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
G TPLH+AA GH +IV VL+ R GA + + T LH A
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLL---------------RNGAD---VNAVDTNGTTPLHLAA 76
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
++++VE+L K D + + G TPLY+AA +
Sbjct: 77 SLGHLEIVEVLLKYGADVN-AKDATGITPLYLAAYW 111
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 56/119 (47%), Gaps = 19/119 (15%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
+ E+L + + + V+ G TPLH+AA GH +IV VL+ + GA
Sbjct: 50 IVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLL---------------KYGAD- 93
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
+ + T L+ A ++++VE+L K D + + +GKT ++ D + ++
Sbjct: 94 --VNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDIGNEDL 149
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 49/96 (51%), Gaps = 25/96 (26%)
Query: 99 TPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGA---ARQMIRMTNNEKNTALHEA 155
TPLH+AA GH++IV VL++ GA A+ M++M TALH A
Sbjct: 69 TPLHMAASEGHANIVEVLLKH---------------GADVNAKDMLKM------TALHWA 107
Query: 156 VCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
H + +VVELL K D ++ + + KT ++ D
Sbjct: 108 TEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISID 142
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 19/95 (20%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
G TPLH+AA GH +IV VL++ + T N T LH A
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNG------------------ADVNATGNTGRTPLHLAA 88
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
++++VE+L K D + + +GKT ++ D
Sbjct: 89 WADHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 122
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 79 VAEILEKCPSLLLQVNAKGDT---PLHVAAKFGHSDIVRVLVERA 120
+ E+L K + VNA G+T PLH+AA H +IV VL++
Sbjct: 62 IVEVLLKNGA---DVNATGNTGRTPLHLAAWADHLEIVEVLLKHG 103
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 19/102 (18%)
Query: 96 KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEA 155
KG+TPLH+AA + H +IV VL++ GA + +N+ +T LH A
Sbjct: 46 KGNTPLHLAADYDHLEIVEVLLKH---------------GAD---VNAHDNDGSTPLHLA 87
Query: 156 VCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
++++VE+L K D + + +GKT ++ D + ++
Sbjct: 88 ALFGHLEIVEVLLKHGADVN-AQDKFGKTAFDISIDNGNEDL 128
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 110 SDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK-NTALHEAVCHQNVDVVELLT 168
SD+ + L+E A+ Q + E R+ A N+ K NT LH A + ++++VE+L
Sbjct: 12 SDLGKKLLEAARAGQDD----EVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLL 67
Query: 169 KEDPDYQYSANNYGKTPLYMAA 190
K D + +N G TPL++AA
Sbjct: 68 KHGADVN-AHDNDGSTPLHLAA 88
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 6/98 (6%)
Query: 23 SQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI 82
S + L +AA AG + + + + + NT LH+ E + E+
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLE------IVEV 65
Query: 83 LEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERA 120
L K + + + G TPLH+AA FGH +IV VL++
Sbjct: 66 LLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 19/113 (16%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
+ E+L K + + ++ G TPLH+AA GH +IV VL++ GA
Sbjct: 62 IVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKH---------------GAD- 105
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
+ + +T LH A ++++VE+L K D + + +GKT ++ D
Sbjct: 106 --VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 155
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 19/113 (16%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
+ E+L K + + ++ G TPLH+AA GH +IV VL++ GA
Sbjct: 62 IVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKH---------------GAD- 105
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
+ + +T LH A ++++VE+L K D + + +GKT ++ D
Sbjct: 106 --VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 155
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
G TPLH+AA +GH +IV VL++ + + +T LH A
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLLKNG------------------ADVNAYDTLGSTPLHLAA 88
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
++++VE+L K D +N G TPL++AA+
Sbjct: 89 HFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAAN 122
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 19/108 (17%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
+ E+L K + + + G TPLH+AA FGH +IV VL++
Sbjct: 62 IVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNG------------------ 103
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPL 186
+ ++ T LH A ++++VE+L K D + + +GKT
Sbjct: 104 ADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN-AQDKFGKTAF 150
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
+ E+L K + + V+ G TPL +AA FGH +IV VL++ GA
Sbjct: 62 IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN---------------GAD- 105
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
+ + E +T LH A ++++VE+L K D + + +GKT ++ D
Sbjct: 106 --VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN-AQDKFGKTAFDISID 155
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 19/113 (16%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
+ E+L K + + + G TPLH+AA GH +IV VL++
Sbjct: 62 IVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA----------------- 104
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
+ +N+ +T LH A + ++++VE+L K D + + +GKT ++ D
Sbjct: 105 -DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 155
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 29 LFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPS 88
L AA+ G+LE + + + + + T T LH+ + E + E+L K +
Sbjct: 51 LHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLE------IVEVLLKHGA 104
Query: 89 LLLQVNAKGDTPLHVAAKFGHSDIVRVLVERA 120
+ + G TPLH+AAK+GH +IV VL++
Sbjct: 105 DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 110 SDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTK 169
SD+ + L+E A+ Q + + GA + T+N+ T LH A + ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD---VNATDNDGYTPLHLAASNGHLEIVEVLLK 68
Query: 170 EDPDYQYSANNYGKTPLYMAA 190
D S + G TPL++AA
Sbjct: 69 NGADVNAS-DLTGITPLHLAA 88
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 40/72 (55%), Gaps = 12/72 (16%)
Query: 52 LLTAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAK---GDTPLHVAAKFG 108
+ +K NT LH N + AE ++K S VNA+ G+TPLH+AAK G
Sbjct: 3 MWGSKDGNTPLH---------NAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNG 53
Query: 109 HSDIVRVLVERA 120
H++IV++L+ +
Sbjct: 54 HAEIVKLLLAKG 65
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 29 LFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPS 88
L AA G+ E K + + + +K NT LH+ + AEI++ +
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHL---------AAKNGHAEIVKLLLA 63
Query: 89 LLLQVNAK---GDTPLHVAAKFGHSDIVRVL 116
VNA+ G+TP H+A K GH +IV++L
Sbjct: 64 KGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 50/98 (51%), Gaps = 19/98 (19%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
++ G TPLH AA+ GH ++V++L+ + + +++ T LH
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKG------------------ADVNAKDSDGRTPLH 75
Query: 154 EAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
A + + +VV+LL + D + ++ G+TPL+ AA+
Sbjct: 76 HAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAE 112
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 65 NIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQ 124
+I +Q RE + V L+ + L Q + G +PLH A + G S +V +L+ R
Sbjct: 3 DIFTQCREGNAVA-VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG---- 57
Query: 125 HENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKT 184
AR I + N +T LH A H + D+V+ L + D + N +G
Sbjct: 58 ------------AR--INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNV 102
Query: 185 PLYMAADY 192
PL+ A +
Sbjct: 103 PLHYACFW 110
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 65 NIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQ 124
+I +Q RE + V L+ + L Q + G +PLH A + G S +V +L+ R
Sbjct: 8 DIFTQCREGNAVA-VRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRG---- 62
Query: 125 HENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKT 184
AR I + N +T LH A H + D+V+ L + D + N +G
Sbjct: 63 ------------AR--INVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNV 107
Query: 185 PLYMAADY 192
PL+ A +
Sbjct: 108 PLHYACFW 115
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 25/116 (21%)
Query: 79 VAEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG 135
+ E+L K + VNAK G TPLH+AA+ GH +IV VL++
Sbjct: 62 IVEVLLKAGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLK----------------- 101
Query: 136 AARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
A + + + T LH A ++++VE+L K D + + +GKT ++ D
Sbjct: 102 -AGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFDISID 155
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 25/169 (14%)
Query: 23 SQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEI 82
S + L +AA AG + + + + T T LH+ S E + E+
Sbjct: 12 SDLGRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLE------IVEV 65
Query: 83 LEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIR 142
L K + + + G TPLH+AA +GH +IV VL++ GA +
Sbjct: 66 LLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN---------------GAD---VN 107
Query: 143 MTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
+++ T LH A +++VE+L K D + + +GKT ++ D
Sbjct: 108 AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN-AQDKFGKTAFDISID 155
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
G TPLH+AA+ GH +IV VL+ + GA + +N T LH A
Sbjct: 47 GLTPLHLAAQLGHLEIVEVLL---------------KYGAD---VNAEDNFGITPLHLAA 88
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
++++VE+L K D + + +GKT ++ D
Sbjct: 89 IRGHLEIVEVLLKHGADVN-AQDKFGKTAFDISID 122
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 123 PQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYG 182
P ENEE E R R + N + +T LH AV H++ ++V LL D G
Sbjct: 134 PNPENEE-EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192
Query: 183 KTPLYMAADYRSSNM 197
+TPL++A + +++++
Sbjct: 193 RTPLHLAVEAQAASV 207
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 20/97 (20%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
N G TPLHVA +++VR+L + A + + T LH
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRD-----------------AGADLNKPEPTCGRTPLH 197
Query: 154 EAVCHQNVDVVELLTKEDPDYQYSANNY-GKTPLYMA 189
AV Q V+ELL K D +A Y G+TPL A
Sbjct: 198 LAVEAQAASVLELLLKAGAD--PTARMYGGRTPLGSA 232
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 147 EKNTALHEAVCHQNVDVVELLTKEDPDYQY--SANNYGKTPLYMAA 190
+ +TALH AV HQ+ ++ L ++Y N+ G+T L++AA
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 123 PQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYG 182
P ENEE E R R + N + +T LH AV H++ ++V LL D G
Sbjct: 134 PNPENEE-EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192
Query: 183 KTPLYMAADYRSSNM 197
+TPL++A + +++++
Sbjct: 193 RTPLHLAVEAQAASV 207
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 41/97 (42%), Gaps = 20/97 (20%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
N G TPLHVA +++VR+L + A + + T LH
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRD-----------------AGADLNKPEPTCGRTPLH 197
Query: 154 EAVCHQNVDVVELLTKEDPDYQYSANNY-GKTPLYMA 189
AV Q V+ELL K D +A Y G+TPL A
Sbjct: 198 LAVEAQAASVLELLLKAGAD--PTARMYGGRTPLGSA 232
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 147 EKNTALHEAVCHQNVDVVELLTKEDPDYQY--SANNYGKTPLYMAA 190
+ +TALH AV HQ+ ++ L ++Y N+ G+T L++AA
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAA 53
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 25/111 (22%)
Query: 92 QVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTA 151
Q A G+T LH+AA + + + VL+E A P+ E + S + E TA
Sbjct: 32 QRGAMGETALHIAALYDNLEAAMVLMEAA--PELVFEPMTSEL-----------YEGQTA 78
Query: 152 LHEAVCHQNVDVVELLTKEDPD---------YQYSANN---YGKTPLYMAA 190
LH AV +QNV++V L + Y +N YG+ PL AA
Sbjct: 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA 129
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 63/169 (37%), Gaps = 47/169 (27%)
Query: 41 FKDMAREVIERLLTAKTKNTILHINIISQ----------ERENVSTKFVAEILEKCPSLL 90
F+ M E+ E T LHI +I+Q +VS + + P L
Sbjct: 65 FEPMTSELYE-------GQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117
Query: 91 LQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNT 150
+ G+ PL AA G +IVR+L+E GA IR ++ NT
Sbjct: 118 IYY---GEHPLSFAACVGSEEIVRLLIEH---------------GAD---IRAQDSLGNT 156
Query: 151 ALHEAVCHQNVDVV-----ELLTKEDPDYQYS----ANNYGKTPLYMAA 190
LH + N LL+ + D+ S NN G TP +A
Sbjct: 157 VLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG 205
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 20/98 (20%)
Query: 87 PSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAK-LPQHENEELESRVGAARQM----- 140
PSL ++ +G + +H+AA+FGH+ IV L+ + + + + + + AA +
Sbjct: 102 PSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDP 158
Query: 141 --IRMTNN---------EKNTALHEAVCHQNVDVVELL 167
+ +T N KNTALH AV N V+ LL
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLL 196
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 110 SDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTK 169
SD+ + L+E A+ Q + + GA + +N T LH A ++++VE+L K
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILIANGAD---VNAVDNTGLTPLHLAAVSGHLEIVEVLLK 68
Query: 170 EDPDYQYSANNYGKTPLYMAA 190
D +A+ YG TPL++AA
Sbjct: 69 HGADVD-AADVYGFTPLHLAA 88
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 60 TILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVE 118
T LH+ ++ E + E+L K + + + G TPLH+AA GH +IV VL++
Sbjct: 82 TPLHLAAMTGHLE------IVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLK 134
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 22/140 (15%)
Query: 76 TKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERA--------------- 120
TK V EIL+ + +V+ +G+TPL++A +I + L++R
Sbjct: 18 TKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYL 77
Query: 121 -KLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELL---TKEDPDYQY 176
Q E L + A + N AL A ++D V+LL +ED D+Q
Sbjct: 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQ- 136
Query: 177 SANNYGKTPLYMAADYRSSN 196
N++G T L A R N
Sbjct: 137 --NDFGYTALIEAVGLREGN 154
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 25 IDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILE 84
ID L +AA GNL ++ + K +T L+ ++ V F +E
Sbjct: 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE 132
Query: 85 KCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERA 120
L Q N GDT LH AA G++DIV++L+ +
Sbjct: 133 -----LNQQNKLGDTALHAAAWKGYADIVQLLLAKG 163
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/124 (22%), Positives = 51/124 (41%), Gaps = 27/124 (21%)
Query: 54 TAKTKNTILHINIISQERENV-------STKFVAEILEKCPSLLLQVNA---KGDTPLHV 103
T+K + ++ N ++++ E++ + + L +C + VN G T L+
Sbjct: 53 TSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYW 112
Query: 104 AAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDV 163
A GH DIV L + + ++ +L +TALH A D+
Sbjct: 113 ACHGGHKDIVEXLFTQPNIELNQQNKL-----------------GDTALHAAAWKGYADI 155
Query: 164 VELL 167
V+LL
Sbjct: 156 VQLL 159
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 20/94 (21%)
Query: 98 DTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVC 157
D PLH AAK G+ +R E L++RVG + + +TAL+ A
Sbjct: 74 DNPLHEAAKRGNLSWLR-------------ECLDNRVG-----VNGLDKAGSTALYWACH 115
Query: 158 HQNVDVVELLTKEDPDYQYSANN-YGKTPLYMAA 190
+ D+VE L + P+ + + N G T L+ AA
Sbjct: 116 GGHKDIVEXLFTQ-PNIELNQQNKLGDTALHAAA 148
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 22/114 (19%)
Query: 81 EILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAA 137
EI+E VNA G TPLH+AA GH +IV VL+ + GA
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLL---------------KYGAD 105
Query: 138 RQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
+ + + T LH A ++++VE+L K D + + +GKT ++ D
Sbjct: 106 ---VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN-AQDKFGKTAFDISID 155
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 21/96 (21%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
G TPLH+ GH +I+ VL++ A + ++ T LH A
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAA------------------DVNASDKSGWTPLHLAA 88
Query: 157 CHQNVDVVELLTKEDPDYQYSANNY-GKTPLYMAAD 191
++++VE+L K D +A +Y G TPL++AA+
Sbjct: 89 YRGHLEIVEVLLKYGAD--VNAMDYQGYTPLHLAAE 122
Score = 33.5 bits (75), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 14/82 (17%)
Query: 47 EVIERLL--------TAKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGD 98
E+IE LL + K+ T LH+ E + E+L K + + ++ +G
Sbjct: 61 EIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLE------IVEVLLKYGADVNAMDYQGY 114
Query: 99 TPLHVAAKFGHSDIVRVLVERA 120
TPLH+AA+ GH +IV VL++
Sbjct: 115 TPLHLAAEDGHLEIVEVLLKYG 136
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 19/95 (20%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
G TPLH+AAK GH +IV VL++ GA + +++ T LH A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKH---------------GAD---VNASDSWGRTPLHLAA 88
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
++++VE+L + D + + +GKT ++ D
Sbjct: 89 TVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISID 122
Score = 33.9 bits (76), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVE 118
+ E+L K + + ++ G TPLH+AA GH +IV VL+E
Sbjct: 62 IVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 28/42 (66%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERA 120
+ E+L K + + ++A G+TPLH+ A +GH +IV VL++
Sbjct: 62 IVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Score = 30.0 bits (66), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 19/89 (21%)
Query: 104 AAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDV 163
AA+ G D VR+L+ + E +VG T LH A + ++++
Sbjct: 21 AARAGQDDEVRILMANGA-----DVNAEDKVGL-------------TPLHLAAMNDHLEI 62
Query: 164 VELLTKEDPDYQYSANNYGKTPLYMAADY 192
VE+L K D + + G+TPL++ A Y
Sbjct: 63 VEVLLKNGADVN-AIDAIGETPLHLVAMY 90
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 15/98 (15%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
GDTPLH+A G+ V LV L Q EL+ + NN + T LH AV
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLV---NLFQQGGRELD-----------IYNNLRQTPLHLAV 54
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRS 194
VV LL + + +G+T ++A ++RS
Sbjct: 55 ITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRS 91
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 59/140 (42%), Gaps = 20/140 (14%)
Query: 58 KNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLV 117
+ T LH+ +I+ + V +L + + ++ G T H+A + +R L+
Sbjct: 46 RQTPLHLAVIT------TLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALL 99
Query: 118 ERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYS 177
+ A +LE+R N + TALH AV + + V+LL + D
Sbjct: 100 DSAA---PGTLDLEAR-----------NYDGLTALHVAVNTECQETVQLLLERGADIDAV 145
Query: 178 ANNYGKTPLYMAADYRSSNM 197
G++PL A + S +M
Sbjct: 146 DIKSGRSPLIHAVENNSLSM 165
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 70 ERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEE 129
E E + +++ + + SL Q + G+T LH+AA++ SD + L+E
Sbjct: 30 EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE----------- 78
Query: 130 LESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA 189
A + +N T LH AV V ++L + + + G TPL +A
Sbjct: 79 -------ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 131
Query: 190 A 190
A
Sbjct: 132 A 132
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 18/77 (23%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
++ G TPLH AA+ GH +IV++L+ + P ++++ T L
Sbjct: 100 DSDGRTPLHYAAENGHKEIVKLLLSKGADPN------------------TSDSDGRTPLD 141
Query: 154 EAVCHQNVDVVELLTKE 170
A H N ++V+LL K+
Sbjct: 142 LAREHGNEEIVKLLEKQ 158
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 51/121 (42%), Gaps = 18/121 (14%)
Query: 70 ERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEE 129
E E + +++ + + SL Q + G+T LH+AA++ SD + L+E
Sbjct: 31 EEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE----------- 79
Query: 130 LESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA 189
A + +N T LH AV V ++L + + + G TPL +A
Sbjct: 80 -------ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA 132
Query: 190 A 190
A
Sbjct: 133 A 133
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 18/77 (23%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALH 153
++ G TPLH+AA+ GH ++V++L+ + P ++++ T L
Sbjct: 100 DSDGKTPLHLAAENGHKEVVKLLLSQGADPN------------------TSDSDGRTPLD 141
Query: 154 EAVCHQNVDVVELLTKE 170
A H N +VV+LL K+
Sbjct: 142 LAREHGNEEVVKLLEKQ 158
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 35.0 bits (79), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 21/110 (19%)
Query: 81 EILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQM 140
E L K +L+ + + +G TPL A+ FG + VR L+E P
Sbjct: 20 EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH---------------- 63
Query: 141 IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQ-YSANNYGKTPLYMA 189
+ E+ +AL A D+V LL + D D Y N G TPL A
Sbjct: 64 --ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYA 109
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
G TPLH+AAK GH +IV VL++ + V A+ R T LH A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHG-----------ADVNASDIWGR-------TPLHLAA 88
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
++++VE+L + D + + +GKT ++ D
Sbjct: 89 TVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISID 122
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVE 118
+ E+L K + + + G TPLH+AA GH +IV VL+E
Sbjct: 62 IVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 145 NNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
N E TALH A+C N +V+ L + S +++G TPL+ AA
Sbjct: 51 NEEGITALHNAICGANYSIVDFLITAGANVN-SPDSHGWTPLHCAA 95
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 35.0 bits (79), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 46/110 (41%), Gaps = 21/110 (19%)
Query: 81 EILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQM 140
E L K +L+ + + +G TPL A+ FG + VR L+E P
Sbjct: 20 EHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH---------------- 63
Query: 141 IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQ-YSANNYGKTPLYMA 189
+ E+ +AL A D+V LL + D D Y N G TPL A
Sbjct: 64 --ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWN--GGTPLLYA 109
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 34.7 bits (78), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 12/67 (17%)
Query: 55 AKTKNTILHINIISQERENVSTKFVAEILEKCPSLLLQVNAK---GDTPLHVAAKFGHSD 111
AK+ T LH+ + K E+L+ VN K G TPLH AA +G +
Sbjct: 196 AKSGGTALHV---------AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE 246
Query: 112 IVRVLVE 118
R+LVE
Sbjct: 247 ACRILVE 253
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 141 IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
I N + TALH+A NVD+V+ L + + +N G PL+ AA
Sbjct: 66 INYANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAA 114
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 12/124 (9%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRV--GA 136
+AE L + + VN++GDTPL +A + ++++ V R + + E R+
Sbjct: 121 IAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRD 180
Query: 137 ARQMIRMTN-------NEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNY-GKTPLYM 188
ARQ + + TALH A +V++LL + Y + +Y G TPL+
Sbjct: 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQ--ARYDVNIKDYDGWTPLHA 238
Query: 189 AADY 192
AA +
Sbjct: 239 AAHW 242
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 19/95 (20%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
G TPLH+AAK GH +IV VL++ ++ +R R T LH A
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGA-------DVNARDIWGR-----------TPLHLAA 88
Query: 157 CHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAAD 191
++++VE+L + D + + +GKT ++ D
Sbjct: 89 TVGHLEIVEVLLEYGADVN-AQDKFGKTAFDISID 122
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 81 EILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVE 118
EI+E VNA+ G TPLH+AA GH +IV VL+E
Sbjct: 61 EIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 34.3 bits (77), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERA 120
V E+L + +L+ + D+PLH AAK GH DIV++L+
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYG 99
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 18/71 (25%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAV 156
G TPLH A GH +V +L++ + ++ T + ++ LH+A
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQH------------------KALVNTTGYQNDSPLHDAA 84
Query: 157 CHQNVDVVELL 167
+ +VD+V+LL
Sbjct: 85 KNGHVDIVKLL 95
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
+++ + + SL Q + G+T LH+AA++ SD + L+E A
Sbjct: 7 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE------------------AS 48
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
+ +N T LH AV V ++L + + + G TPL +AA
Sbjct: 49 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAA 100
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.9 bits (76), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 18/112 (16%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
+++ + + SL Q + G+T LH+AA++ SD + L+E A
Sbjct: 4 ISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLE------------------AS 45
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
+ +N T LH AV V ++L + + + G TPL +AA
Sbjct: 46 ADAXIQDNMGRTPLHAAVSADAQGVFQILLRNRATDLDARMHDGTTPLILAA 97
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 25/132 (18%)
Query: 81 EILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERA----KLPQHENEELESR 133
EI+E L + VN K G +PLH+AA G +IV+ L+ + + Q+ L
Sbjct: 55 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYA 114
Query: 134 VGAARQMIRMT-----------NNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSAN--- 179
R I + ++ + TA+H A N+ ++ +L Y+ S N
Sbjct: 115 ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY----YKASTNIQD 170
Query: 180 NYGKTPLYMAAD 191
G TPL++A D
Sbjct: 171 TEGNTPLHLACD 182
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 11/68 (16%)
Query: 128 EELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTK-----EDPDYQYSANNYG 182
EEL+ + A + + T+ + TALH A + ++VE L + D D + G
Sbjct: 21 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD------DAG 74
Query: 183 KTPLYMAA 190
+PL++AA
Sbjct: 75 WSPLHIAA 82
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 33.9 bits (76), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 25/132 (18%)
Query: 81 EILEKCPSLLLQVNAK---GDTPLHVAAKFGHSDIVRVLVERA----KLPQHENEELESR 133
EI+E L + VN K G +PLH+AA G +IV+ L+ + + Q+ L
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYA 113
Query: 134 VGAARQMIRMT-----------NNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSAN--- 179
R I + ++ + TA+H A N+ ++ +L Y+ S N
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY----YKASTNIQD 169
Query: 180 NYGKTPLYMAAD 191
G TPL++A D
Sbjct: 170 TEGNTPLHLACD 181
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 128 EELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLY 187
EEL+ + A + + T+ + TALH A + ++VE L + ++ G +PL+
Sbjct: 20 EELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLH 78
Query: 188 MAA 190
+AA
Sbjct: 79 IAA 81
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLVE 118
N +G+TPL VA+K+G S+IV+ L+E
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLLE 155
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 25/132 (18%)
Query: 81 EILEKCPSLLLQVNAKGD---TPLHVAAKFGHSDIVRVLVERA----KLPQHENEELESR 133
EI+E L + VN K D +PLH+AA G +IV+ L+ + + Q+ L
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYA 113
Query: 134 VGAARQMIRMTNNEKN-----------TALHEAVCHQNVDVVELLTKEDPDYQYSAN--- 179
R I + E TA+H A N+ +V +L Y+ S N
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF----YKASTNIQD 169
Query: 180 NYGKTPLYMAAD 191
G TPL++A D
Sbjct: 170 TEGNTPLHLACD 181
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 128 EELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLY 187
+EL+ R+ A + + T+ + TALH A + ++VE L + ++ G +PL+
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLH 78
Query: 188 MAA 190
+AA
Sbjct: 79 IAA 81
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 33.1 bits (74), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 143 MTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
+ N+E TALH AVC + ++V+ L + + +A++ G TPL+ AA
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAA 111
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 33.1 bits (74), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 143 MTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
+ N+E TALH AVC + ++V+ L + + +A++ G TPL+ AA
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAA 111
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 33.1 bits (74), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 56/132 (42%), Gaps = 25/132 (18%)
Query: 81 EILEKCPSLLLQVNAKGD---TPLHVAAKFGHSDIVRVLVERA----KLPQHENEELESR 133
EI+E L + VN K D +PLH+AA G +IV+ L+ + + Q+ L
Sbjct: 54 EIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYA 113
Query: 134 VGAARQMIRMTNNEKN-----------TALHEAVCHQNVDVVELLTKEDPDYQYSAN--- 179
R I + E TA+H A N+ +V +L Y+ S N
Sbjct: 114 ASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLF----YKASTNIQD 169
Query: 180 NYGKTPLYMAAD 191
G TPL++A D
Sbjct: 170 TEGNTPLHLACD 181
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 128 EELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLY 187
+EL+ R+ A + + T+ + TALH A + ++VE L + ++ G +PL+
Sbjct: 20 DELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLH 78
Query: 188 MAA 190
+AA
Sbjct: 79 IAA 81
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 33.1 bits (74), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 18/113 (15%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
V E+L PSLLLQ + G PLH + F +I L+ + EN L+
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM-----ENVNLDD------ 66
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMA 189
++ T H A N++VV+ L PD N G T L++A
Sbjct: 67 ----YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLA 114
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 18/113 (15%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
V E+L PSLLLQ + G PLH + F +I L+ + EN L+
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM-----ENVNLDD------ 66
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMA 189
++ T H A N++VV+ L PD N G T L++A
Sbjct: 67 ----YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLA 114
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 47/113 (41%), Gaps = 18/113 (15%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAAR 138
V E+L PSLLLQ + G PLH + F +I L+ + EN L+
Sbjct: 18 VQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM-----ENVNLDD------ 66
Query: 139 QMIRMTNNEKNTALHEAVCHQNVDVVELLTKE--DPDYQYSANNYGKTPLYMA 189
++ T H A N++VV+ L PD N G T L++A
Sbjct: 67 ----YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLA 114
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 79 VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERA 120
+ E+L K + + V+A G TPLH+AA GH +I VL++
Sbjct: 62 IVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 22/97 (22%)
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKN 149
VNAK G TPL++A GH +IV VL++ + V A +
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLLKNG-----------ADVNAVDAI-------GF 81
Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPL 186
T LH A ++++ E+L K D + + +GKT
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGADVN-AQDKFGKTAF 117
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVE 118
G TPLH+AA+ GH ++V++L+E
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLE 60
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 32.0 bits (71), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 60/145 (41%), Gaps = 24/145 (16%)
Query: 29 LFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCPS 88
L +AAAAG + + + + T T LH+ + + E + E+L K +
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLE------IVEVLLKNGA 63
Query: 89 LLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEK 148
+ ++ G TPLH+AA GH +IV VL++ + +
Sbjct: 64 DVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA------------------DVNAYDRAG 105
Query: 149 NTALHEAVCHQNVDVVELLTKEDPD 173
T LH A +++VE+L K D
Sbjct: 106 WTPLHLAALSGQLEIVEVLLKHGAD 130
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 107 FGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNEKNTALHEAVCHQNVDVVEL 166
FG D+ + L+E A Q + + GA + T++ T LH A + +++VE+
Sbjct: 2 FGQ-DLGKKLLEAAAAGQDDEVRILMANGAD---VNATDDNGLTPLHLAAANGQLEIVEV 57
Query: 167 LTKEDPDYQYSANNYGKTPLYMAA 190
L K D S ++ G TPL++AA
Sbjct: 58 LLKNGADVNAS-DSAGITPLHLAA 80
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 3/29 (10%)
Query: 93 VNAK---GDTPLHVAAKFGHSDIVRVLVE 118
VNAK G TPLH+AA+ GH +IV VL++
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLK 56
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 19/22 (86%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVE 118
G TPLH+AA+ GH ++V++L+E
Sbjct: 57 GSTPLHLAARNGHLEVVKLLLE 78
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 14/73 (19%)
Query: 59 NTILH--INIISQERENVSTKFVAE----ILEKCPSLLLQVNAK------GDTPLHVAAK 106
NT+LH + I REN TKFV + +L KC L N + G +PL +AAK
Sbjct: 177 NTVLHALVAIADNTREN--TKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAK 234
Query: 107 FGHSDIVRVLVER 119
G I + ++ R
Sbjct: 235 TGKIGIFQHIIRR 247
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 14/73 (19%)
Query: 59 NTILH--INIISQERENVSTKFVAE----ILEKCPSLLLQ------VNAKGDTPLHVAAK 106
NT+LH + I REN TKFV + +L KC L +N G +PL +AAK
Sbjct: 175 NTVLHALVAIADNTREN--TKFVTKMYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAK 232
Query: 107 FGHSDIVRVLVER 119
G I + ++ R
Sbjct: 233 TGKIGIFQHIIRR 245
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 30.8 bits (68), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 28/162 (17%)
Query: 29 LFKAAAAGNLEPFKDMA-REVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCP 87
L AAA G+++ + + RE++ + T L + + ST E+L++
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG------STAIALELLKQGA 59
Query: 88 SLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNE 147
S +Q + G +P+H AA+ G D ++VLVE H + + + +
Sbjct: 60 SPNVQ-DTSGTSPVHDAARTGFLDTLKVLVE------HGAD------------VNVPDGT 100
Query: 148 KNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA 189
+H AV + VV L E ++ A G TPL +A
Sbjct: 101 GALPIHLAVQEGHTAVVSFLAAESDLHRRDAR--GLTPLELA 140
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 30.4 bits (67), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 28 NLFKAAAAGNLEPFKD-MAREVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKC 86
+L +AA +L K +A E+I ++ T LH + S + K VAE+L +
Sbjct: 181 SLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKR---KQVAELLLRK 236
Query: 87 PSLLLQVNAKGDTPLHVAAKFGHSDIVRVL 116
+ + + N TPLHVAA+ H+D++ VL
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVL 266
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 48/114 (42%), Gaps = 22/114 (19%)
Query: 94 NAKGDTPLHVAAKFGHSDIVRVLVERAK----------LPQH--------ENEELESRVG 135
+ + TPLH+AA + IV++L++ +P H E EL + G
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHG 114
Query: 136 AARQMIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA 189
A + + + T LHEA V+V LL D N +GK+ + MA
Sbjct: 115 AC---VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL-VNCHGKSAVDMA 164
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 69/162 (42%), Gaps = 28/162 (17%)
Query: 29 LFKAAAAGNLEPFKDMA-REVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCP 87
L AAA G+++ + + RE++ + T L + + ST E+L++
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG------STAIALELLKQGA 65
Query: 88 SLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNE 147
S +Q + G +P+H AA+ G D ++VLVE H + + + +
Sbjct: 66 SPNVQ-DTSGTSPVHDAARTGFLDTLKVLVE------HGAD------------VNVPDGT 106
Query: 148 KNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMA 189
+H AV + VV L E ++ A G TPL +A
Sbjct: 107 GALPIHLAVQEGHTAVVSFLAAESDLHRRDAR--GLTPLELA 146
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 28/140 (20%)
Query: 18 GEISQSQIDPNLFKAAAAGNLEPFKDMA-------REVIER----LLTAKTKNTILHINI 66
G + S+ D L +AA AG++E K + R++ R L A N + +
Sbjct: 1 GAMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 60
Query: 67 ISQERENVSTKF-----------------VAEILEKCPSLLLQVNAKGDTPLHVAAKFGH 109
+ Q +V K VAE+L K +++ + TPLH AA G
Sbjct: 61 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGK 120
Query: 110 SDIVRVLVERAKLPQHENEE 129
+I ++L++ P +N +
Sbjct: 121 YEICKLLLQHGADPTKKNRD 140
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 28/170 (16%)
Query: 29 LFKAAAAGNLEPFKDMA-REVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCP 87
L AAA G+++ + + RE++ + T L + + S E+L++
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG------SPAVALELLKQGA 67
Query: 88 SLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNE 147
S +Q +A G +P+H AA+ G D ++VLVE GA + ++
Sbjct: 68 SPNVQ-DASGTSPVHDAARTGFLDTLKVLVEH---------------GAD---VNALDST 108
Query: 148 KNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
+ +H A+ + VV L E + A+ G TPL +A + N+
Sbjct: 109 GSLPIHLAIREGHSSVVSFLAPESDLHHRDAS--GLTPLELARQRGAQNL 156
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 73/170 (42%), Gaps = 28/170 (16%)
Query: 29 LFKAAAAGNLEPFKDMA-REVIERLLTAKTKNTILHINIISQERENVSTKFVAEILEKCP 87
L AAA G+++ + + RE++ + T L + + S E+L++
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFG------SPAVALELLKQGA 65
Query: 88 SLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMTNNE 147
S +Q +A G +P+H AA+ G D ++VLVE GA + ++
Sbjct: 66 SPNVQ-DASGTSPVHDAARTGFLDTLKVLVEH---------------GAD---VNALDST 106
Query: 148 KNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADYRSSNM 197
+ +H A+ + VV L E + A+ G TPL +A + N+
Sbjct: 107 GSLPIHLAIREGHSSVVSFLAPESDLHHRDAS--GLTPLELARQRGAQNL 154
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 54 TAKTKNTILHINIISQERENVSTKFVAEILEK--------CPSLLLQ--VNAKGDTPLHV 103
T NT+LH ++ + ++ V + + CP++ L+ N +G TPL +
Sbjct: 181 TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL 240
Query: 104 AAKFGHSDIVRVLVER 119
AAK G +I R +++R
Sbjct: 241 AAKEGKIEIFRHILQR 256
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 63 HINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKL 122
H+ I + + E+V V ++LE ++ Q G TPLH A + DIV +L+
Sbjct: 27 HLLIKAVQNEDVD--LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 84
Query: 123 P 123
P
Sbjct: 85 P 85
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
T LH AV D+VELL + D N G TP +AA
Sbjct: 61 TPLHNAVQMSREDIVELLLRHGADPVLRKKN-GATPFILAA 100
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 54 TAKTKNTILHINIISQERENVSTKFVAEILEK--------CPSLLLQ--VNAKGDTPLHV 103
T NT+LH ++ + ++ V + + CP++ L+ N +G TPL +
Sbjct: 168 TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL 227
Query: 104 AAKFGHSDIVRVLVER 119
AAK G +I R +++R
Sbjct: 228 AAKEGKIEIFRHILQR 243
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 40 PFKDMAREVIERLLTAKTKNTILHINIISQERENVSTK--FVAEIL-EKCPSLLLQVNA- 95
P+ AR+ E+ L+ +L + EN T FVA + +KC LL + A
Sbjct: 48 PWWTAARKADEQALS-----QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD 102
Query: 96 -------KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQMIRMT 144
G T LH+AA + ++V LVE + E+E + + AR++++ T
Sbjct: 103 LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTT 158
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 63 HINIISQERENVSTKFVAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVRVLVERAKL 122
H+ I + + E+V V ++LE ++ Q G TPLH A + DIV +L+
Sbjct: 7 HLLIKAVQNEDVD--LVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64
Query: 123 P 123
P
Sbjct: 65 P 65
Score = 27.7 bits (60), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
T LH AV D+VELL + D N G TP +AA
Sbjct: 41 TPLHNAVQMSREDIVELLLRHGADPVLRKKN-GATPFLLAA 80
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 78 FVAEI-LEKCPSLLLQVNA--------KGDTPLHVAAKFGHSDIVRVLVERAKLPQHENE 128
FVA + +KC LL + A G T LH+AA + ++V LVE + E+E
Sbjct: 82 FVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 141
Query: 129 ELESRVGAARQMIRMT 144
+ + AR++++ T
Sbjct: 142 RGLTALELAREILKTT 157
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 96 KGDTPLHVAAKFGHSDIVRVLVE 118
+G+ PLH+AAK GH +V LV+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 26/116 (22%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG------AARQM---------- 140
G T L V K G+ +I R L+ R N +L+ R G AAR
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGA-----NPDLKDRTGFAVIHDAARAGFLDTLQTLLE 91
Query: 141 ----IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
+ + +NE N LH A ++ VVE L K N+ G T +A Y
Sbjct: 92 NQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 96 KGDTPLHVAAKFGHSDIVRVLVE 118
+G+ PLH+AAK GH +V LV+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 26/116 (22%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG------AARQM---------- 140
G T L V K G+ +I R L+ R N +L+ R G AAR
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGA-----NPDLKDRTGNAVIHDAARAGFLDTLQTLLE 91
Query: 141 ----IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
+ + +NE N LH A ++ VVE L K N+ G T +A Y
Sbjct: 92 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 96 KGDTPLHVAAKFGHSDIVRVLVE 118
+G+ PLH+AAK GH +V LV+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 26/116 (22%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG------AARQM---------- 140
G T L V K G+ +I R L+ R N +L+ R G AAR
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGA-----NPDLKDRTGFAVIHDAARAGQLDTLQTLLE 91
Query: 141 ----IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
+ + +NE N LH A ++ VVE L K N+ G T +A Y
Sbjct: 92 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 28/138 (20%)
Query: 20 ISQSQIDPNLFKAAAAGNLEPFKDMA-------REVIERLLT----AKTKNTILHINIIS 68
+ S+ D L +AA AG++E K + R++ R T A N + + +
Sbjct: 7 LGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 66
Query: 69 QERENVSTKF-----------------VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSD 111
Q +V K VAE+L K +++ + TPLH AA G +
Sbjct: 67 QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 126
Query: 112 IVRVLVERAKLPQHENEE 129
I ++L++ P +N +
Sbjct: 127 ICKLLLQHGADPTKKNRD 144
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 96 KGDTPLHVAAKFGHSDIVRVLVE 118
+G+ PLH+AAK GH +V LV+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
Score = 26.6 bits (57), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 26/116 (22%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG------AARQM---------- 140
G T L V K G+ +I R L+ R N +L+ R G AAR
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGA-----NPDLKDRTGFAVIHDAARAGFLDTLQTLLE 91
Query: 141 ----IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
+ + +NE N LH A ++ VVE L K N+ G T +A Y
Sbjct: 92 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 96 KGDTPLHVAAKFGHSDIVRVLVE 118
+G+ PLH+AAK GH +V LV+
Sbjct: 102 EGNLPLHLAAKEGHLRVVEFLVK 124
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 45/116 (38%), Gaps = 26/116 (22%)
Query: 97 GDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVG------AARQM---------- 140
G T L V K G+ +I R L+ R N +L+ R G AAR
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGA-----NPDLKDRTGFAVIHDAARAGFLDTLQTLLE 91
Query: 141 ----IRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAADY 192
+ + +NE N LH A ++ VVE L K N+ G T +A Y
Sbjct: 92 FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 13/54 (24%)
Query: 150 TALHEAVCHQNVDVVELLTKEDPDYQYSANN-------------YGKTPLYMAA 190
TALH A+ +N +V LL + D Q +AN +G+ PL +AA
Sbjct: 103 TALHIAIERRNXTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA 156
>pdb|3CMG|A Chain A, Crystal Structure Of Putative Beta-Galactosidase From
Bacteroides Fragilis
Length = 667
Score = 27.7 bits (60), Expect = 4.2, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 22 QSQIDPNLFKAAAAGNLEPFKDMAREVIERLLTAKTKNTILHINIISQERENVSTKFVAE 81
Q + P K A NL ++ L+T TK +I +E NVS K A+
Sbjct: 167 QEVVSPQEAKVCAKVNLSNRAADGTAELQVLVTDGTK-------VICKESRNVSLKQGAD 219
Query: 82 ILEKCPSLLLQ 92
ILE+ P LL+Q
Sbjct: 220 ILEQLP-LLIQ 229
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 56/135 (41%), Gaps = 28/135 (20%)
Query: 23 SQIDPNLFKAAAAGNLEPFKDMA-------REVIERLLT----AKTKNTILHINIISQER 71
S+ D L +AA AG++E K + R++ R T A N + + + Q
Sbjct: 8 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 67
Query: 72 ENVSTKF-----------------VAEILEKCPSLLLQVNAKGDTPLHVAAKFGHSDIVR 114
+V K VAE+L K +++ + TPLH AA G +I +
Sbjct: 68 ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICK 127
Query: 115 VLVERAKLPQHENEE 129
+L++ P +N +
Sbjct: 128 LLLQHGADPTKKNRD 142
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 10/76 (13%)
Query: 54 TAKTKNTILH--INIISQERENVS--TKFVAEILEK----CPSLLLQ--VNAKGDTPLHV 103
T NT+LH + I EN++ T +L+ CP++ L+ N + TPL +
Sbjct: 173 TDSQGNTVLHALVXISDNSAENIALVTSXYDGLLQAGARLCPTVQLEDIRNLQDLTPLKL 232
Query: 104 AAKFGHSDIVRVLVER 119
AAK G +I R +++R
Sbjct: 233 AAKEGKIEIFRHILQR 248
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 140 MIRMTNNEKNTALHEAVCHQNVDVVELLTKEDPDYQYSANNYGKTPLYMAA 190
++ + ++ NTALH +V H N VV+ L N G +P+ + A
Sbjct: 103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA 153
>pdb|1H2T|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|A Chain A, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|B Chain B, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
Length = 723
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 65 NIISQERENVSTKFVAEILEKC 86
+ +SQ+ E+ KFV E+LEKC
Sbjct: 416 DCLSQDPESPKPKFVREVLEKC 437
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 95 AKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQ 139
A G+T LH AA + D +++L++ L NE E+ + AR+
Sbjct: 205 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 249
>pdb|1N52|A Chain A, Cap Binding Complex
pdb|1N54|A Chain A, Cap Binding Complex M7gpppg Free
pdb|3FEX|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|A Chain A, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 790
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 65 NIISQERENVSTKFVAEILEKC 86
+ +SQ+ E+ KFV E+LEKC
Sbjct: 435 DCLSQDPESPKPKFVREVLEKC 456
>pdb|1H6K|A Chain A, Nuclear Cap Binding Complex
pdb|1H6K|B Chain B, Nuclear Cap Binding Complex
pdb|1H6K|C Chain C, Nuclear Cap Binding Complex
Length = 757
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 65 NIISQERENVSTKFVAEILEKC 86
+ +SQ+ E+ KFV E+LEKC
Sbjct: 416 DCLSQDPESPKPKFVREVLEKC 437
>pdb|1H2V|C Chain C, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
Length = 771
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 65 NIISQERENVSTKFVAEILEKC 86
+ +SQ+ E+ KFV E+LEKC
Sbjct: 416 DCLSQDPESPKPKFVREVLEKC 437
>pdb|1S4F|A Chain A, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
pdb|1S4F|B Chain B, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
pdb|1S4F|C Chain C, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
pdb|1S4F|D Chain D, Crystal Structure Of Rna-Dependent Rna Polymerase
Construct 2 From Bovine Viral Diarrhea Virus (Bvdv)
Length = 601
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 10/103 (9%)
Query: 4 VSNEIEEASLLDNNGEISQSQIDPNLFKAAAAGNLEP-----FKDMAREVIERL---LTA 55
+ + I + +L GE++ Q++ + + AAG LE D + ++E+L L A
Sbjct: 113 IFHTIAQPTLKHTYGEVTWEQLEAGVNRKGAAGFLEKKNIGEVLDSEKHLVEQLVRDLKA 172
Query: 56 KTKNTILHINIISQERENVSTKFVAE--ILEKCPSLLLQVNAK 96
K I E+ +VS + A ++EK P ++ AK
Sbjct: 173 GRKIKYYETAIPKNEKRDVSDDWQAGDLVVEKRPRVIQYPEAK 215
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 95 AKGDTPLHVAAKFGHSDIVRVLVERAKLPQHENEELESRVGAARQ 139
A G+T LH AA + D +++L++ L NE E+ + AR+
Sbjct: 224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARK 268
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.127 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,171,386
Number of Sequences: 62578
Number of extensions: 186479
Number of successful extensions: 739
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 227
length of query: 197
length of database: 14,973,337
effective HSP length: 94
effective length of query: 103
effective length of database: 9,091,005
effective search space: 936373515
effective search space used: 936373515
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)