BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043189
(182 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EDD|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDD|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 98 NALLKNSLPKEFQYYRADE----ETFKSSHDA-FRSAFPRGFAWEVISVFSG 144
N + ++P+ Q+Y DE T K DA +R FP G+A + + FSG
Sbjct: 436 NLVFLMTMPRIPQFYSGDEILMTSTVKGRDDASYRRDFPGGWAGDKANAFSG 487
>pdb|3EDF|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDF|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDJ|B Chain B, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDK|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 98 NALLKNSLPKEFQYYRADE----ETFKSSHDA-FRSAFPRGFAWEVISVFSG 144
N + ++P+ Q+Y DE T K DA +R FP G+A + + FSG
Sbjct: 436 NLVFLMTMPRIPQFYSGDEILMTSTVKGRDDASYRRDFPGGWAGDKANAFSG 487
>pdb|3EDE|A Chain A, Structural Base For Cyclodextrin Hydrolysis
pdb|3EDE|B Chain B, Structural Base For Cyclodextrin Hydrolysis
Length = 601
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 5/52 (9%)
Query: 98 NALLKNSLPKEFQYYRADE----ETFKSSHDA-FRSAFPRGFAWEVISVFSG 144
N + ++P+ Q+Y DE T K DA +R FP G+A + + FSG
Sbjct: 436 NLVFLMTMPRIPQFYSGDEILMTSTVKGRDDASYRRDFPGGWAGDKANAFSG 487
>pdb|1PIO|A Chain A, An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase
That Hydrolyses Third Generation Cephalosporins
pdb|1PIO|B Chain B, An Engineered Staphylococcus Aureus Pc1 Beta-Lactamase
That Hydrolyses Third Generation Cephalosporins
Length = 257
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 57/111 (51%), Gaps = 19/111 (17%)
Query: 46 ETVQNAVKSWEMELSHKTSLNDFKTINPEKF-----KLIVNGRKDLSGEE-------TLQ 93
+ V N V+ +E+EL++ + + T P F KLI NG+ LS E L
Sbjct: 125 DKVTNPVR-YEIELNYYSPKSKKDTSTPAAFGKTLNKLIANGK--LSKENKKFLLDLMLN 181
Query: 94 LGSYNALLKNSLPKEFQYY-RADEETFKSSHD-AFRSAFPRGFAWEVISVF 142
S + L+K+ +PK+++ ++ + T+ S +D AF +P+G + ++ V
Sbjct: 182 NKSGDTLIKDGVPKDYKVADKSGQSTYASRNDVAF--VYPKGQSEPIVLVI 230
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 12/118 (10%)
Query: 46 ETVQNAVKSWEMELSHKTSLNDFKTINPE-----KFKLIVNGRKD---LSGEETLQLGSY 97
E ++ + W + + D +TI+P + +L++ +D + G ++ GS+
Sbjct: 248 EQSRSQMALWTIMAAPLLMSTDLRTISPSAKKILQNRLMIQINQDPLGIQGRRIIKEGSH 307
Query: 98 NALLKNSLPKEFQ----YYRADEETFKSSHDAFRSAFPRGFAWEVISVFSGPPVVAYK 151
+ L + + R + F+ + + FP G A+EV V+SG + K
Sbjct: 308 IEVFLRPLSQAASALVFFSRRTDMPFRYTTSLAKLGFPMGAAYEVQDVYSGKIISGLK 365
>pdb|3HJB|A Chain A, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|B Chain B, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|C Chain C, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae.
pdb|3HJB|D Chain D, 1.5 Angstrom Crystal Structure Of Glucose-6-Phosphate
Isomerase From Vibrio Cholerae
Length = 574
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 88 GEETLQLGSYNALLKNSLPKEFQYYRADEETFKSSHD 124
G E L GS NA+LKN P + Q ++A F+S+ D
Sbjct: 14 GTENLYFGS-NAMLKNINPTQTQAWKALTAHFESAQD 49
>pdb|3V89|A Chain A, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisseria Meningitidis Serogroup B In
Complex With The C-Lobe Of Human Transferrin
Length = 904
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 104 SLPKEFQYYRADEETFKSSHDAFRSAFPRGFAWEVI----SVFSGPPVVAYKFRHWGYF 158
S K F YY++D + SH ++AF + F I SV G RH Y+
Sbjct: 447 SADKPFSYYKSDRVIYGESHRLLQAAFKKSFDTAKIRHNLSVNLGFDRFGSNLRHQDYY 505
>pdb|3V8X|A Chain A, The Crystal Structure Of Transferrin Binding Protein A
(Tbpa) From Neisserial Meningitidis Serogroup B In
Complex With Full Length Human Transferrin
Length = 904
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 104 SLPKEFQYYRADEETFKSSHDAFRSAFPRGFAWEVI----SVFSGPPVVAYKFRHWGYF 158
S K F YY++D + SH ++AF + F I SV G RH Y+
Sbjct: 447 SADKPFSYYKSDRVIYGESHRLLQAAFKKSFDTAKIRHNLSVNLGFDRFGSNLRHQDYY 505
>pdb|3PJB|A Chain A, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 4.0
pdb|3PJB|B Chain B, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 4.0
Length = 229
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE I+ +
Sbjct: 76 DFFKQSFPEGFTWERITTY 94
>pdb|4EDS|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Eqfp670
pdb|4EDS|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Eqfp670
Length = 241
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE I+ +
Sbjct: 88 DFFKQSFPEGFTWERITTY 106
>pdb|3PIB|A Chain A, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
pdb|3PIB|B Chain B, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
pdb|3PIB|C Chain C, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
pdb|3PIB|D Chain D, Crystal Structure Of Red Fluorescent Protein Eqfp578
Crystallized At Ph 5.5
Length = 236
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE I+ +
Sbjct: 83 DFFKQSFPEGFTWERITTY 101
>pdb|3PJ7|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|C Chain C, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
pdb|3PJ7|D Chain D, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 8.5
Length = 229
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE I+ +
Sbjct: 76 DFFKQSFPEGFTWERITTY 94
>pdb|3PJ5|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 5.0
pdb|3PJ5|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Katushka
Crystallized At Ph 5.0
Length = 224
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE I+ +
Sbjct: 77 DFFKQSFPEGFTWERITTY 95
>pdb|4EDO|A Chain A, Crystal Structure Of Far-Red Fluorescent Protein Eqfp650
pdb|4EDO|B Chain B, Crystal Structure Of Far-Red Fluorescent Protein Eqfp650
Length = 241
Score = 27.7 bits (60), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE I+ +
Sbjct: 88 DFFKQSFPEGFTWERITTY 106
>pdb|1H3G|A Chain A, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
pdb|1H3G|B Chain B, Cyclomaltodextrinase From Flavobacterium Sp. No. 92: From
Dna Sequence To Protein Structure
Length = 601
Score = 27.7 bits (60), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 98 NALLKNSLPKEFQYYRADE----ETFKSSHDA-FRSAFPRGFAWEVISVFSG 144
N + + P+ Q+Y DE T K DA +R FP G+A + + FSG
Sbjct: 436 NLVFLXTXPRIPQFYSGDEILXTSTVKGRDDASYRRDFPGGWAGDKANAFSG 487
>pdb|2IB5|A Chain A, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB5|B Chain B, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB5|C Chain C, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB5|D Chain D, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB5|E Chain E, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB5|F Chain F, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB5|G Chain G, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB5|H Chain H, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|A Chain A, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|B Chain B, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|C Chain C, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|D Chain D, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|E Chain E, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|F Chain F, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|G Chain G, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
pdb|2IB6|H Chain H, Structural Characterization Of A Blue Chromoprotein And
Its Yellow Mutant From The Sea Anemone Cnidopus
Japonicus
Length = 233
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE +++
Sbjct: 79 DYFKQSFPEGFTWERTTIY 97
>pdb|3T6H|A Chain A, 2.2 Angstrom Crystal Structure Of Tagrfp-T
pdb|3T6H|B Chain B, 2.2 Angstrom Crystal Structure Of Tagrfp-T
pdb|3T6H|C Chain C, 2.2 Angstrom Crystal Structure Of Tagrfp-T
pdb|3T6H|D Chain D, 2.2 Angstrom Crystal Structure Of Tagrfp-T
Length = 238
Score = 27.3 bits (59), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE ++ +
Sbjct: 76 DFFKQSFPEGFTWERVTTY 94
>pdb|3M24|A Chain A, Crystal Structure Of Tagbfp Fluorescent Protein
pdb|3M24|B Chain B, Crystal Structure Of Tagbfp Fluorescent Protein
pdb|3M24|C Chain C, Crystal Structure Of Tagbfp Fluorescent Protein
pdb|3M24|D Chain D, Crystal Structure Of Tagbfp Fluorescent Protein
Length = 232
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE ++ +
Sbjct: 77 DFFKQSFPEGFTWERVTTY 95
>pdb|3M22|A Chain A, Crystal Structure Of Tagrfp Fluorescent Protein
pdb|3M22|B Chain B, Crystal Structure Of Tagrfp Fluorescent Protein
pdb|3M22|C Chain C, Crystal Structure Of Tagrfp Fluorescent Protein
pdb|3M22|D Chain D, Crystal Structure Of Tagrfp Fluorescent Protein
Length = 235
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE ++ +
Sbjct: 80 DFFKQSFPEGFTWERVTTY 98
>pdb|3NT9|A Chain A, Crystal Structure Of Lssmkate1 Red Fluorescent Proteins
With Large Stokes Shift
pdb|3NT9|B Chain B, Crystal Structure Of Lssmkate1 Red Fluorescent Proteins
With Large Stokes Shift
pdb|3NT9|C Chain C, Crystal Structure Of Lssmkate1 Red Fluorescent Proteins
With Large Stokes Shift
pdb|3NT9|D Chain D, Crystal Structure Of Lssmkate1 Red Fluorescent Proteins
With Large Stokes Shift
Length = 243
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE ++ +
Sbjct: 88 DFFKQSFPEGFTWERVTTY 106
>pdb|3IP2|A Chain A, Crystal Structure Of Red Fluorescent Protein Neptune At Ph
7.0
Length = 242
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE ++ +
Sbjct: 80 DFFKQSFPEGFTWERVTTY 98
>pdb|3BX9|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 2.0
pdb|3BX9|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 2.0
pdb|3BXA|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 4.2
pdb|3BXA|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 4.2
pdb|3BXB|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|C Chain C, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|D Chain D, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|E Chain E, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|F Chain F, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|G Chain G, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXB|H Chain H, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 7.0
pdb|3BXC|A Chain A, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|B Chain B, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|C Chain C, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|D Chain D, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|E Chain E, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|F Chain F, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|G Chain G, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
pdb|3BXC|H Chain H, Monomeric Far-Red Fluorescent Protein Mkate Crystallized
At Ph 9.0
Length = 243
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE ++ +
Sbjct: 88 DFFKQSFPEGFTWERVTTY 106
>pdb|3NT3|A Chain A, Crystal Structure Of Lssmkate2 Red Fluorescent Proteins
With Large Stokes Shift
pdb|3NT3|B Chain B, Crystal Structure Of Lssmkate2 Red Fluorescent Proteins
With Large Stokes Shift
pdb|3NT3|C Chain C, Crystal Structure Of Lssmkate2 Red Fluorescent Proteins
With Large Stokes Shift
pdb|3NT3|D Chain D, Crystal Structure Of Lssmkate2 Red Fluorescent Proteins
With Large Stokes Shift
Length = 243
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE ++ +
Sbjct: 88 DFFKQSFPEGFTWERVTTY 106
>pdb|3RWT|A Chain A, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
pdb|3RWT|B Chain B, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
pdb|3RWT|C Chain C, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
pdb|3RWT|D Chain D, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
pdb|3RWT|E Chain E, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
pdb|3RWT|F Chain F, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
pdb|3RWT|G Chain G, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
pdb|3RWT|H Chain H, Crystal Structure Of Circular Permutated Red Fluorescent
Protein Mkate(Cp 154-153)
Length = 235
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE ++ +
Sbjct: 162 DFFKQSFPEGFTWERVTTY 180
>pdb|3RWA|A Chain A, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|B Chain B, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|C Chain C, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|D Chain D, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|E Chain E, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|F Chain F, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|G Chain G, Crystal Structure Of Circular-Permutated Mkate
pdb|3RWA|H Chain H, Crystal Structure Of Circular-Permutated Mkate
Length = 233
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE ++ +
Sbjct: 146 DFFKQSFPEGFTWERVTTY 164
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 26.9 bits (58), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 18 HGGPPIFDKVNKLFEEGRTKEWPKGSIEETVQNAVKSWEMELSHKTSLNDF 68
HG + VN L +EG+ P +E Q K WE + S++TS +
Sbjct: 232 HGQMTVTRLVNTL-KEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNL 281
>pdb|3SVU|A Chain A, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|B Chain B, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|C Chain C, Crystal Structure Of Mkate Mutant S143c
pdb|3SVU|D Chain D, Crystal Structure Of Mkate Mutant S143c
Length = 233
Score = 26.9 bits (58), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE ++ +
Sbjct: 80 DFFKQSFPEGFTWERVTTY 98
>pdb|3SVO|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVO|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 10.0
pdb|3SVR|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVR|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 7.5
pdb|3SVS|A Chain A, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|B Chain B, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|C Chain C, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|D Chain D, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|E Chain E, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|F Chain F, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|G Chain G, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
pdb|3SVS|H Chain H, Crystal Structure Of Mkate Mutant S158aS143C AT PH 4.0
Length = 233
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE ++ +
Sbjct: 80 DFFKQSFPEGFTWERVTTY 98
>pdb|3SVN|A Chain A, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
pdb|3SVN|B Chain B, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
pdb|3SVN|C Chain C, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
pdb|3SVN|D Chain D, Crystal Structure Of Mkate S158a Mutant At Ph 7.5
Length = 233
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 124 DAFRSAFPRGFAWEVISVF 142
D F+ +FP GF WE ++ +
Sbjct: 80 DFFKQSFPEGFTWERVTTY 98
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 18 HGGPPIFDKVNKLFEEGRTKEWPKGSIEETVQNAVKSWEMELSHKTSLNDF 68
HG + VN L +EG+ P +E Q K WE + S++TS +
Sbjct: 244 HGQMTVTRLVNTL-KEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNL 293
>pdb|3U0K|A Chain A, Crystal Structure Of The Genetically Encoded Calcium
Indicator Rcamp
Length = 440
Score = 26.6 bits (57), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 124 DAFRSAFPRGFAWEVISVFSGPPVVA 149
D F+ +FP GF WE ++ + V+
Sbjct: 227 DFFKQSFPEGFTWERVTRYEDGGVIT 252
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,101,373
Number of Sequences: 62578
Number of extensions: 248948
Number of successful extensions: 735
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 49
length of query: 182
length of database: 14,973,337
effective HSP length: 93
effective length of query: 89
effective length of database: 9,153,583
effective search space: 814668887
effective search space used: 814668887
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)