BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 043190
(1492 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|E9PZJ8|ASCC3_MOUSE Activating signal cointegrator 1 complex subunit 3 OS=Mus musculus
GN=Ascc3 PE=2 SV=1
Length = 2198
Score = 1656 bits (4288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 821/1546 (53%), Positives = 1071/1546 (69%), Gaps = 68/1546 (4%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLF+FD +RP+PL Q ++GI N
Sbjct: 636 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSTNKM 695
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ ++ GHQ MVFVH+R TV+TA L++ A+ + F P
Sbjct: 696 QQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTEGP 755
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+ K V KSRNK + ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 756 EYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAW 815
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH VVIKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 816 GVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 875
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPLAYG
Sbjct: 876 HYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVRWMSYTYLYVRMRANPLAYG 935
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP+L + L+ + + LDKAKM+RF+E++G F T+LGR ASHFYI+Y++
Sbjct: 936 ISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGYFSSTDLGRTASHFYIKYNT 995
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H + ++ +VS + EF+ I VR+EE EL+ L+ C + GG N +
Sbjct: 996 IETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSY 1055
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1056 GKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSK 1115
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP IL +LEE+ +D+L++M + +IG ++ + G VK
Sbjct: 1116 VIDKRLWGWASPLRQFSV-LPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVK 1174
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGA-AQRWWIIVQDSESDHIY 596
Q + PS+ + A++ PITRTVL++ L I P+F+W D HG + WWI V+D +DHIY
Sbjct: 1175 QCVHQIPSVTMEASIQPITRTVLRVSLNIHPDFSWNDQVHGTVGEPWWIWVEDPTNDHIY 1234
Query: 597 HSELF-TLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F L K++ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1235 HSEYFLALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1294
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLP+TALG YEALYNFSHFNP+QTQIFH LYHTD NVLLGAPTGS
Sbjct: 1295 ERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1354
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRERM+DWK R+ +LGK+++E+TGD TP
Sbjct: 1355 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTP 1414
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ ++ AD+I++TPEKWDG+SR+W +R+YV++V ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1415 DMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRT 1474
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1475 NFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQH 1534
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM SMNKPA+ AI +HSP KPVLIFVSSRRQTRLTAL+LI F A++E P+Q+L M E
Sbjct: 1535 YCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDE 1594
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
+++ ++ V D NL+ TL FGIG+HHAGL+++DR VEELF N K+QVL+ TSTLAWGV
Sbjct: 1595 QEMDNIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGV 1654
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVIIKGTEYYDGKT+RYVDFPITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1655 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1714
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL L DH NAEI GTI K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1715 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYSLG 1774
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
D + ++ +LS L+ + +LE S C+++ ED T+EP G IAS YYL + TV MF
Sbjct: 1775 DVSQDSINKFLSHLIGQSLVELELSHCIEVGEDNRTIEPLTCGRIASYYYLKHKTVKMFK 1834
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P+ S E L ILS A EY +LPVRHNED+ N L++ + ++ + D PH KA+L
Sbjct: 1835 DRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIELNPHSFDSPHTKAHL 1894
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAH SR LP DY TD K+VLDQ++R+ QAM+D+ A+ GWL + + HL+QMV+QG
Sbjct: 1895 LLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTVLNITHLIQMVIQG 1954
Query: 1314 LWFEQDSALWMFPCMNNDLLGTLR----------ARGISTVQQLLDI--PKENLQTVIGN 1361
W +DS+L P + L R A+ ++++ L ++ E V +
Sbjct: 1955 RWL-KDSSLLTIPNIEQHHLHLFRKWKPPVKSSHAKCRTSIECLPELIHACEGKDHVFSS 2013
Query: 1362 FPVSRLHQD--------LQRFPRIQVKLRLQRR---DIDGENSLTLN-IRMDKM--NSW- 1406
L L R P I V + ++ ++G N L+++ + DK N W
Sbjct: 2014 MVEKELQPAKTKQAWNFLSRLPVINVGISVKGSWDDLVEGHNELSISTLTADKRDENKWI 2073
Query: 1407 ------------------------KNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKR 1442
K+ + A RFPK+KDE W+L+LG + EL A+KR
Sbjct: 2074 KLHADQEYVLQVSLQRVHFGLPKGKHENHAVTPRFPKLKDEGWFLILGEVDKRELMAVKR 2133
Query: 1443 ISFSDRLNTHMELPSGITTFQG-----MKLVVVSDCYLGFEQEHSI 1483
+ F + TH + T + L ++SDCYLG +Q++ I
Sbjct: 2134 VGF---VRTHHDASISFFTPETPGRYIFTLYLMSDCYLGLDQQYDI 2176
Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust.
Identities = 249/793 (31%), Positives = 406/793 (51%), Gaps = 37/793 (4%)
Query: 668 KPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLH 727
KP+ + L A N IQ+ +F Y+T+ N+L+ APTG+GKT A L +LH
Sbjct: 457 KPVYIKDLDEVGQLAFKGMKRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTILH 516
Query: 728 LFN--------TQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779
+++ K+VY+AP+KA+ E N + RL LG + E+TGD
Sbjct: 517 EIRQHFHQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRL-EPLGIVVKELTGDMQLSKSE 575
Query: 780 LLSADIIISTPEKWDGISRNWHSRNYVKK-VGLMILDEIHLLGAERGPILEVIVSRMRYI 838
+L ++++TPEKWD ++R + + V L+ILDE+HLL +RGP+LE IV+R
Sbjct: 576 ILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQ 635
Query: 839 SSQTERAVRFIGLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGKFYC 897
T+ +R +GLS L N D+A +L V IGLF F RPVPL G
Sbjct: 636 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSTNKM 695
Query: 898 PRMNSMNKPAYAAICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEE 956
++N+M++ Y ++ V++FV +R T TA+ LI+ A + FL
Sbjct: 696 QQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTEGP 755
Query: 957 DLQMVLSQVT---DQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013
+ L QV ++ +R+ G +HHAG+ +DR+LVE LF+N I+VLVCT+TLAW
Sbjct: 756 EYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAW 815
Query: 1014 GVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073
GVNLPAH V+IKGT+ Y K +VD I D++Q+ GRAGRPQ+D+ G+ +I+ K S
Sbjct: 816 GVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 875
Query: 1074 FYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYG 1133
Y L + P+ES + L D+ NAEI GT+ + E+AV ++S+TYL+ R+ NP YG
Sbjct: 876 HYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVRWMSYTYLYVRMRANPLAYG 935
Query: 1134 LEDTEAE---GLSSYLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVT 1188
+ + L + +L+ + L+ + ++ E T T LG AS +Y+ Y T
Sbjct: 936 ISHKAYQIDPTLRKHREQLLIEVGQKLDKAKMIRFEERTGYFSSTDLGRTASHFYIKYNT 995
Query: 1189 VSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPH 1248
+ F + I+S A E+D++ VR E +AL +++ +
Sbjct: 996 IETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSY 1055
Query: 1249 VKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQ 1308
K N+L Q + SR ++ ++D V + RI++A+ +I W + + ++L +
Sbjct: 1056 GKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSK 1115
Query: 1309 MVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVS-RL 1367
++ + LW S L F + +L L + + TV +L D+ K+ + ++ + + ++
Sbjct: 1116 VIDKRLW-GWASPLRQFSVLPPHILTRLEEKNL-TVDKLKDMRKDEIGHILHHVNIGLKV 1173
Query: 1368 HQDLQRFPRIQVKLRLQ--RRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAW 1425
Q + + P + ++ +Q R + ++LNI D SW + E W
Sbjct: 1174 KQCVHQIPSVTMEASIQPITRTV---LRVSLNIHPD--FSWNDQVHGTV-------GEPW 1221
Query: 1426 WLVLGNTNTSELY 1438
W+ + + +Y
Sbjct: 1222 WIWVEDPTNDHIY 1234
>sp|Q8N3C0|ASCC3_HUMAN Activating signal cointegrator 1 complex subunit 3 OS=Homo sapiens
GN=ASCC3 PE=1 SV=3
Length = 2202
Score = 1652 bits (4278), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 826/1556 (53%), Positives = 1075/1556 (69%), Gaps = 74/1556 (4%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLFFFD +RP+PL Q ++GI N
Sbjct: 635 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVPLGQTFLGIKCANKM 694
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ ++ GHQ MVFVH+R TV+TA L++ A+ + F
Sbjct: 695 QQLNNMDEVCYENVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNCGHIPFFFPTQGH 754
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
L +K V +SRNK + ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 755 DYVLAEKQVQRSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAW 814
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH V+IKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 815 GVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 874
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT + PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPLAYG
Sbjct: 875 HYLTLLTQRNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLAYG 934
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP+L + LV + R LDKA+M+RF+E++G F T+LGR ASH+YI+Y++
Sbjct: 935 ISHKAYQIDPTLRKHREQLVIEVGRKLDKAQMIRFEERTGYFSSTDLGRTASHYYIKYNT 994
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H + ++ +VS + EF+ I VR+EE EL+TL+ C + GG N +
Sbjct: 995 IETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSTPGGVENSY 1054
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1055 GKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSK 1114
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP IL +LEE+ +D+L++M + +IG ++ + G VK
Sbjct: 1115 VIDKRLWGWASPLRQFSI-LPPHILTRLEEKKLTVDKLKDMRKDEIGHILHHVNIGLKVK 1173
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGA-AQRWWIIVQDSESDHIY 596
Q + PS+ + A++ PITRTVL++ L+I +FTW D HG + WWI V+D +DHIY
Sbjct: 1174 QCVHQIPSVMMEASIQPITRTVLRVTLSIYADFTWNDQVHGTVGEPWWIWVEDPTNDHIY 1233
Query: 597 HSELF-TLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F L K++ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1234 HSEYFLALKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1293
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLP+TALG YEALYNFSHFNP+QTQIFH LYHTD NVLLGAPTGS
Sbjct: 1294 ERHPPHTELLDLQPLPITALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1353
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRERM+DWK R+ +LGK+++E+TGD TP
Sbjct: 1354 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTP 1413
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ ++ AD+I++TPEKWDG+SR+W +RNYV++V ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1414 DMKSIAKADLIVTTPEKWDGVSRSWQNRNYVQQVTILIIDEIHLLGEERGPVLEVIVSRT 1473
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1474 NFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQH 1533
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM SMNKPA+ AI +HSP KPVLIFVSSRRQTRLTAL+LI F A++E P+Q+L M E
Sbjct: 1534 YCPRMASMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDE 1593
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
+++ +++ V D NL+ TL FGIG+HHAGL+++DR VEELF N K+QVL+ TSTLAWGV
Sbjct: 1594 REMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGV 1653
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVIIKGTEYYDGKT+RYVDFPITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1654 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1713
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL L DH NAEI GTI K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1714 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLG 1773
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
D + ++ +LS L++ + +LE S C+++ ED ++EP G IAS YYL + TV MF
Sbjct: 1774 DVSHDSVNKFLSHLIEKSLIELELSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFK 1833
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P+ S E L ILS A EY +LPVRHNED+ N L++ + + + D PH KA+L
Sbjct: 1834 DRLKPECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIESNPHSFDSPHTKAHL 1893
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAH SR LP DY TD K+VLDQ++R+ QAM+D+ AN GWL + + +L+QMV+QG
Sbjct: 1894 LLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQG 1953
Query: 1314 LWFEQDSALWMFPCMNNDLLGTLR----------ARGISTVQQLLDIPKE--NLQTVIGN 1361
W +DS+L P + N L + ARG ++++ L ++ V +
Sbjct: 1954 RWL-KDSSLLTLPNIENHHLHLFKKWKPIMKGPHARGRTSIESLPELIHACGGKDHVFSS 2012
Query: 1362 FPVSRLHQD--------LQRFPRIQVKLRLQRR---DIDGENSLTLN-IRMDKM--NSW- 1406
S LH L P I V + ++ ++G N L+++ + DK N W
Sbjct: 2013 MVESELHAAKTKQAWNFLSHLPVINVGISVKGSWDDLVEGHNELSVSTLTADKRDDNKWI 2072
Query: 1407 ------------------------KNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKR 1442
K S A RFPK KDE W+L+LG + EL ALKR
Sbjct: 2073 KLHADQEYVLQVSLQRVHFGFHKGKPESCAVTPRFPKSKDEGWFLILGEVDKRELIALKR 2132
Query: 1443 ISFSDRLNTHM--------ELPSGITTFQGMKLVVVSDCYLGFEQEHSIEALVEQS 1490
+ + N H+ E+P L +SDCYLG +Q++ I V Q+
Sbjct: 2133 VGYIR--NHHVASLSFYTPEIPGRYI----YTLYFMSDCYLGLDQQYDIYLNVTQA 2182
Score = 368 bits (945), Expect = e-100, Method: Compositional matrix adjust.
Identities = 239/737 (32%), Positives = 384/737 (52%), Gaps = 23/737 (3%)
Query: 668 KPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLH 727
KP+ + L A N IQ+ +F Y+T+ N+L+ APTG+GKT A L +LH
Sbjct: 456 KPVYIQDLDEIGQLAFKGMKRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLH 515
Query: 728 LFN--------TQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779
+++ K+VY+AP+KA+ E M D+ R + LG + E+TGD
Sbjct: 516 EIRQHFQQGVIKKNEFKIVYVAPMKALAAE-MTDYFSRRLEPLGIIVKELTGDMQLSKSE 574
Query: 780 LLSADIIISTPEKWDGISRNWHSRNYVKK-VGLMILDEIHLLGAERGPILEVIVSRMRYI 838
+L ++++TPEKWD ++R + + V L+ILDE+HLL +RGP+LE IV+R
Sbjct: 575 ILRTQMLVTTPEKWDVVTRKSVGDVALSQIVRLLILDEVHLLHEDRGPVLESIVARTLRQ 634
Query: 839 SSQTERAVRFIGLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGKFYC 897
T+ +R +GLS L N D+A +L V IGLF F RPVPL G
Sbjct: 635 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFFFDGRFRPVPLGQTFLGIKCANKM 694
Query: 898 PRMNSMNKPAYAAICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEE 956
++N+M++ Y + V++FV +R T TA+ LI+ A + F
Sbjct: 695 QQLNNMDEVCYENVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNCGHIPFFFPTQGH 754
Query: 957 DLQMVLSQVT---DQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013
D + QV ++ +R+ G +HHAG+ +DR+LVE LF+N I+VLVCT+TLAW
Sbjct: 755 DYVLAEKQVQRSRNKQVRELFPDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAW 814
Query: 1014 GVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073
GVNLPAH VIIKGT+ Y K +VD I D++Q+ GRAGRPQ+D+ G+ +I+ K S
Sbjct: 815 GVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 874
Query: 1074 FYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYG 1133
Y L + P+ES + L D+ NAEI GT+ + E+AV ++S+TYL+ R+ NP YG
Sbjct: 875 HYLTLLTQRNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLAYG 934
Query: 1134 LEDTEAE---GLSSYLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVT 1188
+ + L + +LV L+ + ++ E T T LG AS YY+ Y T
Sbjct: 935 ISHKAYQIDPTLRKHREQLVIEVGRKLDKAQMIRFEERTGYFSSTDLGRTASHYYIKYNT 994
Query: 1189 VSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPH 1248
+ F + I+S A E+D++ VR E + L +++ +
Sbjct: 995 IETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSTPGGVENSY 1054
Query: 1249 VKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQ 1308
K N+L Q + SR ++ ++D V + RI++A+ +I W + + ++L +
Sbjct: 1055 GKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSK 1114
Query: 1309 MVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVS-RL 1367
++ + LW S L F + +L L + + TV +L D+ K+ + ++ + + ++
Sbjct: 1115 VIDKRLW-GWASPLRQFSILPPHILTRLEEKKL-TVDKLKDMRKDEIGHILHHVNIGLKV 1172
Query: 1368 HQDLQRFPRIQVKLRLQ 1384
Q + + P + ++ +Q
Sbjct: 1173 KQCVHQIPSVMMEASIQ 1189
>sp|E1BNG3|ASCC3_BOVIN Activating signal cointegrator 1 complex subunit 3 OS=Bos taurus
GN=ascc3 PE=3 SV=1
Length = 2201
Score = 1650 bits (4274), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 823/1555 (52%), Positives = 1074/1555 (69%), Gaps = 68/1555 (4%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLFFFD +RP+PL Q ++GI N
Sbjct: 635 VESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLFFFDGRFRPVPLGQTFLGIKSANKV 694
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ ++ GHQ MVFVH+R TV+TA L++ A+ + F P
Sbjct: 695 QQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNNGQICYFLPTQGP 754
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+ +K V KSRN+ + ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 755 EYGHAEKQVQKSRNRQVRELFPDGFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAW 814
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH V+IKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 815 GVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 874
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPL YG
Sbjct: 875 HYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYG 934
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP+L+ + LV + R LDKA+M+RF+E++G F T+LGR ASH+YI+Y++
Sbjct: 935 ISHKAYQIDPTLAKHREQLVIEVGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNT 994
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H +S++ +VS + EF+ I VR+EE EL+TL+ C + GG N +
Sbjct: 995 IETFNELFDAHKTESDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSAPGGVENSY 1054
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1055 GKINILLQTYISRGEVDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSK 1114
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP IL +LEE+ +D+L++M + +IG ++ + G VK
Sbjct: 1115 VIDKRLWGWTSPLRQFSV-LPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVK 1173
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGA-AQRWWIIVQDSESDHIY 596
Q + PS+ + A++ PITRTVL++ L+I+P+F+W D HG + WWI V+D +DHIY
Sbjct: 1174 QCVHQIPSVTMEASIQPITRTVLRVTLSISPDFSWNDQVHGTVGEPWWIWVEDPTNDHIY 1233
Query: 597 HSELF-TLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F L K++ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1234 HSEYFLVLKKQVISKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1293
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLPVTALG YEALYNFSHFNP+QTQIFH LYHTD NVLLGAPTGS
Sbjct: 1294 ERHPPHTELLDLQPLPVTALGCEAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1353
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRERM+DWK R+ +LGK+++E+TGD TP
Sbjct: 1354 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKVRIEEKLGKKVIELTGDVTP 1413
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ ++ AD+I++TPEKWDG+SR+W +RNYVK+V ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1414 DMKSIAKADLIVTTPEKWDGVSRSWQNRNYVKQVTILIIDEIHLLGEERGPVLEVIVSRT 1473
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1474 NFISSHTEKPVRIVGLSTALANARDLADWLNIRQMGLFNFRPSVRPVPLEVHIQGFPGQH 1533
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM SMNKP + AI +HSP KPVLIFVSSRRQTRLTAL+LI F A++E P+Q+L M E
Sbjct: 1534 YCPRMASMNKPTFQAIRSHSPAKPVLIFVSSRRQTRLTALELIAFLATEEDPKQWLNMDE 1593
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
+++ ++ + D NL+ TL FGIG+HHAGL+++DR VEELF N KIQVL+ TSTLAWGV
Sbjct: 1594 REMENIIGTIRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGV 1653
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVIIKGTEYYDGKT+RYVDFPITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1654 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1713
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL L DH NAEI GTI K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1714 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDAMDYITWTYFFRRLIMNPSYYNLS 1773
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
D + ++ +LS LV+ + +LE S C+++ ED ++EP G IAS YYL + TV MF
Sbjct: 1774 DVSHDSVNKFLSNLVEKSLVELEHSYCIEIGEDNRSIEPLTYGRIASYYYLKHQTVKMFK 1833
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P+ E L ILS A EY +LPVRHNED+ N L++ + + + D PH KA+L
Sbjct: 1834 ERLKPECGTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPLESNPHSFDSPHTKAHL 1893
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAH SR LP DY TD K+VLDQ++R+ QAM+D+ A+ GWL + + L+QMV+QG
Sbjct: 1894 LLQAHLSRTMLPCPDYDTDTKTVLDQALRVCQAMLDVAAHQGWLVTVLNITSLVQMVIQG 1953
Query: 1314 LWFEQDSALWMFPCMNNDLLGTLRA-----RG--------ISTVQQLLD--IPKENL--Q 1356
W +DS+L P + N L R +G I + +L+ K+++
Sbjct: 1954 RWL-KDSSLLTIPHIENHHLHIFRKWSPGMKGPHAGYHGSIECLPELIHACAGKDHVFSS 2012
Query: 1357 TVIGNFPVSRLHQD---LQRFPRIQVKLRLQ---RRDIDGENSLTL-NIRMDKM--NSW- 1406
+ P ++ Q L P I V L ++ +G + +++ + DK N W
Sbjct: 2013 MIEKELPAPKMKQAWNFLSHLPVIDVGLSVKGWWDDAAEGHDEISITTVASDKHSDNRWV 2072
Query: 1407 ------------------------KNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKR 1442
K S A RFPK KDE W+L+LG + EL ALKR
Sbjct: 2073 RLHADQEYVLQVSLQRVSLGFHKGKQDSHAVTPRFPKSKDEGWFLILGEVDKRELIALKR 2132
Query: 1443 ISFSDRLNTHMELPSGITTFQG-----MKLVVVSDCYLGFEQEHSIEALVEQSVI 1492
+ + + +H + T + L +SDCYLG +Q++ I V + I
Sbjct: 2133 VGY---VRSHHMVSISFYTPEVPGRYIYTLYFMSDCYLGLDQQYDIHLHVTPASI 2184
Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust.
Identities = 251/793 (31%), Positives = 403/793 (50%), Gaps = 37/793 (4%)
Query: 668 KPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLH 727
KP+ + L A N IQ+ +F Y+T+ N+L+ APTG+GKT A L +LH
Sbjct: 456 KPVYIQDLDEIGQLAFKGMRRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLH 515
Query: 728 LFN--------TQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779
+++ K+VY+AP+KA+ E N + RL LG + E+TGD
Sbjct: 516 EIRQHFQQGVIKKNEFKIVYVAPMKALAAEMTNYFSKRL-EPLGIVVKELTGDMQLSKNE 574
Query: 780 LLSADIIISTPEKWDGISRNWHSRNYVKK-VGLMILDEIHLLGAERGPILEVIVSRMRYI 838
+L ++++TPEKWD ++R + + V L+ILDE+HLL +RGP+LE IV+R
Sbjct: 575 ILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQ 634
Query: 839 SSQTERAVRFIGLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGKFYC 897
T+ +R +GLS L N D+A +L V IGLF F RPVPL G
Sbjct: 635 VESTQSMIRILGLSATLPNYLDVATFLHVNPCIGLFFFDGRFRPVPLGQTFLGIKSANKV 694
Query: 898 PRMNSMNKPAYAAICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEE 956
++N+M++ Y ++ V++FV +R T TA+ LI+ A ++ FL
Sbjct: 695 QQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNNGQICYFLPTQGP 754
Query: 957 DLQMVLSQVTDQNLRQTLQF---GIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013
+ QV RQ + G +HHAG+ +DR+LVE LF+N I+VLVCT+TLAW
Sbjct: 755 EYGHAEKQVQKSRNRQVRELFPDGFSIHHAGMLRQDRNLVESLFSNGHIKVLVCTATLAW 814
Query: 1014 GVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073
GVNLPAH VIIKGT+ Y K +VD I D++Q+ GRAGRPQ+D+ G+ +I+ K S
Sbjct: 815 GVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 874
Query: 1074 FYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYG 1133
Y L + P+ES + L D+ NAEI GT+ + E+AV ++S+TYL+ R+ NP YG
Sbjct: 875 HYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYG 934
Query: 1134 LEDTEAE---GLSSYLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVT 1188
+ + L+ + +LV L+ + ++ E T T LG AS YY+ Y T
Sbjct: 935 ISHKAYQIDPTLAKHREQLVIEVGRKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNT 994
Query: 1189 VSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPH 1248
+ F + I+S A E+D++ VR E + L +++ +
Sbjct: 995 IETFNELFDAHKTESDIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSAPGGVENSY 1054
Query: 1249 VKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQ 1308
K N+L Q + SR ++ ++D V + RI++A+ +I W + + ++L +
Sbjct: 1055 GKINILLQTYISRGEVDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSK 1114
Query: 1309 MVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVS-RL 1367
++ + LW S L F + +L L + + TV +L D+ K+ + ++ + + ++
Sbjct: 1115 VIDKRLW-GWTSPLRQFSVLPPHILTRLEEKNL-TVDKLKDMRKDEIGHILHHVNIGLKV 1172
Query: 1368 HQDLQRFPRIQVKLRLQ--RRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAW 1425
Q + + P + ++ +Q R + +TL+I D SW + E W
Sbjct: 1173 KQCVHQIPSVTMEASIQPITRTV---LRVTLSISPD--FSWNDQVHGTV-------GEPW 1220
Query: 1426 WLVLGNTNTSELY 1438
W+ + + +Y
Sbjct: 1221 WIWVEDPTNDHIY 1233
>sp|F1NTD6|ASCC3_CHICK Activating signal cointegrator 1 complex subunit 3 OS=Gallus gallus
GN=ascc3 PE=3 SV=2
Length = 2211
Score = 1641 bits (4250), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 822/1546 (53%), Positives = 1064/1546 (68%), Gaps = 68/1546 (4%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLF+FDS +RP+PL Q +IGI N
Sbjct: 644 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDSRFRPVPLGQTFIGIKTTNKV 703
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ + GHQ MVFVH+R TV+TA L + A+ + F +
Sbjct: 704 QQLNHMDEVCYENVLKQIMAGHQVMVFVHARNATVRTAMALREKAKNNGHICHFLSPQGS 763
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+K V +SRNK L ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 764 DYGQAEKQVQRSRNKQLRELFPDGFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAW 823
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH VVIKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 824 GVNLPAHAVVIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 883
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPL YG
Sbjct: 884 HYLTLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYG 943
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP L + LV + R LDKA+M+RF+E++G F T+LGR ASH+YI+Y++
Sbjct: 944 ISHKAYQMDPGLEKHREQLVIEVGRKLDKARMIRFEERTGFFSSTDLGRTASHYYIKYNT 1003
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H + +++ +VS + EFE I VR+EE EL+TL+ C + GG N +
Sbjct: 1004 IETFNELFDAHKTEGDILAIVSKAEEFEQIKVREEEIEELDTLLNDFCELPAPGGVENNY 1063
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1064 GKINILLQTYISRGELDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSK 1123
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP +L KLEE+ +D++++M + +IG ++ + G VK
Sbjct: 1124 VIDKRLWGWVSPLRQFSV-LPPSVLSKLEEKNLTVDKMKDMRKDEIGHMLHHVKIGLKVK 1182
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGA-AQRWWIIVQDSESDHIY 596
Q + PSI + AT+ PITRTVL++ L ITP+FTW D HG + WWI V+D +DHIY
Sbjct: 1183 QCVHQIPSIAMEATIQPITRTVLRVRLNITPDFTWNDQVHGTVGEPWWIWVEDPTNDHIY 1242
Query: 597 HSELFTLTKR-MARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F + K+ + E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1243 HSEYFIIQKKQVITKEPQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1302
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLPVTALG+ YE LY F+HFNPIQTQIFH LYHTD NVLLGAPTGS
Sbjct: 1303 ERHPPHTELLDLQPLPVTALGHPEYEVLYKFTHFNPIQTQIFHTLYHTDCNVLLGAPTGS 1362
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRER+ DWK R+ +LGK++VE+TGD TP
Sbjct: 1363 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERIEDWKVRIEEKLGKKVVELTGDVTP 1422
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ A+ AD+I++TPEKWDG+SR+W +R+YV+KV ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1423 DMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVSILIIDEIHLLGDERGPVLEVIVSRT 1482
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1483 NFISSHTEKPVRVVGLSTALANARDLADWLNINQMGLFNFRPSVRPVPLEVHIQGFPGQH 1542
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM MNKPA+ AI +HSP KPVLIFVSSRRQTRLT+LDLI F A+++ P+Q+L M E
Sbjct: 1543 YCPRMARMNKPAFQAIRSHSPAKPVLIFVSSRRQTRLTSLDLIAFLATEDDPKQWLKMDE 1602
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
++ ++ V D NL+ TL FGIG+HHAGL+++DR VEELF N KIQVL+ TSTLAWGV
Sbjct: 1603 REMNDIIGTVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWGV 1662
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVI+KGTEYYDGKT+RYVD+PITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1663 NFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1722
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL D L DH NAEI +GTI K+DA+ Y++WTY FRRL +NP YY L+
Sbjct: 1723 KKFLYEPFPVESSLLDVLADHLNAEIAAGTITSKQDAMDYITWTYFFRRLIMNPTYYNLD 1782
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
+ + ++ YLS LV+ + DLE S C+++ ED T+EP G IAS YYL + T+ MF
Sbjct: 1783 NVSHDTMNKYLSSLVEKSLFDLECSYCIEIGEDNRTIEPLTYGRIASYYYLKHPTIGMFK 1842
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P++S+E L IL+ A EY +LPVRHNED N L++ + V+ + D H K +L
Sbjct: 1843 DQLKPESSVEELLLILTNADEYTDLPVRHNEDQMNSELAKHLPIEVNPHSFDSSHTKTHL 1902
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAHFS LP DY TD K+VLDQ+IRI QAM+D+ A+ GWL +++ +L+QMV+QG
Sbjct: 1903 LLQAHFSHAILPCPDYATDTKTVLDQAIRICQAMLDVTAHHGWLVAALNITNLVQMVVQG 1962
Query: 1314 LWFEQDSA----------LWMFPCMNNDLLGTLRARGISTVQQLLDI-----PKENLQTV 1358
W S L++F + ++ ++ L ++ KE++
Sbjct: 1963 RWIHDSSLLTVPNIEVQHLYLFQKWSQQKRKSVHGGYQGPIECLPELMAACEGKEDVFAS 2022
Query: 1359 IGNFPVSRLHQD-----LQRFPRIQVKLRLQ---------------------RRD----- 1387
I + + H L R P + V L ++ RD
Sbjct: 2023 IVDSELQTAHISQAWNFLSRLPILNVSLSIKGCWDDPAQPQNEVPVPCLTADTRDNKRWI 2082
Query: 1388 ---IDGENSLTLNIRMDKMN-SWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRI 1443
D E L ++++ +M K S+A A RFPK+KDE W+L+LG + EL ALKR
Sbjct: 2083 KLHADQEYVLQIHLQRTQMGYQGKQDSKAVAPRFPKVKDEGWFLILGEVDKKELIALKRT 2142
Query: 1444 SFSDRLNT------HMELPSGITTFQGMKLVVVSDCYLGFEQEHSI 1483
+ NT E P L ++SD YLG +Q++ I
Sbjct: 2143 GYVRNRNTVSVAFYTPETPGKCI----YTLYLMSDSYLGMDQQYDI 2184
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 239/723 (33%), Positives = 378/723 (52%), Gaps = 23/723 (3%)
Query: 682 ALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFN--------TQS 733
A N IQ+ +F Y+T+ N+L+ APTG+GKT A L +LH +
Sbjct: 479 AFKGMKRLNRIQSIVFETAYNTNENMLICAPTGAGKTNIAMLTVLHEIRQHVQHGVIKKD 538
Query: 734 DMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKW 793
+ K+VY+AP+KA+ E N + RL LG + E+TGD +L ++++TPEKW
Sbjct: 539 EFKIVYVAPMKALAAEMTNYFSKRL-EPLGITVKELTGDMQLSKGEILRTQMLVTTPEKW 597
Query: 794 DGISRNWHSRNYVKK-VGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLS 852
D ++R + + V L+ILDE+HLL +RGP+LE IV+R T+ +R +GLS
Sbjct: 598 DVVTRKSVGDVALSQLVKLLILDEVHLLHEDRGPVLESIVARTLRQVESTQSMIRILGLS 657
Query: 853 TALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI 911
L N D+A +L V IGLF F RPVPL G ++N M++ Y +
Sbjct: 658 ATLPNYLDVATFLHVNPYIGLFYFDSRFRPVPLGQTFIGIKTTNKVQQLNHMDEVCYENV 717
Query: 912 CTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVT---D 967
V++FV +R T TA+ L + A ++ FL D QV +
Sbjct: 718 LKQIMAGHQVMVFVHARNATVRTAMALREKAKNNGHICHFLSPQGSDYGQAEKQVQRSRN 777
Query: 968 QNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGT 1027
+ LR+ G +HHAG+ +DRSLVE LF+N I+VLVCT+TLAWGVNLPAH V+IKGT
Sbjct: 778 KQLRELFPDGFSIHHAGMLRQDRSLVENLFSNGHIKVLVCTATLAWGVNLPAHAVVIKGT 837
Query: 1028 EYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVES 1087
+ Y K +VD I D++Q+ GRAGRPQ+D+ G+ +I+ K S Y L + P+ES
Sbjct: 838 QIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLSHYLTLLTQQNPIES 897
Query: 1088 SLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAE---GLSS 1144
+ L D+ NAEI GT+ + E+AV ++S+TYL+ R+ NP YG+ + GL
Sbjct: 898 QFLESLADNLNAEIALGTVTNVEEAVKWISYTYLYVRMRANPLVYGISHKAYQMDPGLEK 957
Query: 1145 YLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSL 1202
+ +LV L+ + ++ E T T LG AS YY+ Y T+ F +
Sbjct: 958 HREQLVIEVGRKLDKARMIRFEERTGFFSSTDLGRTASHYYIKYNTIETFNELFDAHKTE 1017
Query: 1203 EVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRL 1262
L I+S A E++++ VR E + L +++ + K N+L Q + SR
Sbjct: 1018 GDILAIVSKAEEFEQIKVREEEIEELDTLLNDFCELPAPGGVENNYGKINILLQTYISRG 1077
Query: 1263 DLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSAL 1322
+L ++D V + RI++A+ +I W + + ++L +++ + LW S L
Sbjct: 1078 ELDSFSLISDSAYVAQNAARIVRALFEIALRKRWPAMTYRLLNLSKVIDKRLW-GWVSPL 1136
Query: 1323 WMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVS-RLHQDLQRFPRIQVKL 1381
F + +L L + + TV ++ D+ K+ + ++ + + ++ Q + + P I ++
Sbjct: 1137 RQFSVLPPSVLSKLEEKNL-TVDKMKDMRKDEIGHMLHHVKIGLKVKQCVHQIPSIAMEA 1195
Query: 1382 RLQ 1384
+Q
Sbjct: 1196 TIQ 1198
>sp|F1LPQ2|ASCC3_RAT Activating signal cointegrator 1 complex subunit 3 OS=Rattus
norvegicus GN=Ascc3 PE=2 SV=1
Length = 2197
Score = 1625 bits (4209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 804/1546 (52%), Positives = 1064/1546 (68%), Gaps = 69/1546 (4%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLF+FD +RP+PL Q ++GI N
Sbjct: 636 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKM 695
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+ V+ ++ GHQ MVFVH+R TV+TA L++ A+ + F P
Sbjct: 696 QQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTQGP 755
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+ K V KSRNK + ELF +HHAGMLR DR L E LFS G +KVLVCTATLAW
Sbjct: 756 EYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAW 815
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH V+IKGTQ+Y K G + DLG+LD IFGRAGRPQFD+ GEGIIIT+HDKL+
Sbjct: 816 GVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 875
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF+ SL DNLNAE+ALGTVTNV+EA W+ YTYL +RM+ NPLAYG
Sbjct: 876 HYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYG 935
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP+L + L+ + + LDKA+M+RF+E++G F T+LGR ASH+YI+Y++
Sbjct: 936 ISHKAYQMDPTLRKHREQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNT 995
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ET+NE+ H + ++ +VS + EF+ I VR+EE EL+ L+ C + GG N +
Sbjct: 996 IETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSY 1055
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
GKI+IL+Q YISRG +D+FSL+SD+AY++ + ARI+RALFE LR+ W M+ +L K
Sbjct: 1056 GKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSK 1115
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF LP IL +LEE+ +D+L++M + +IG ++ + G VK
Sbjct: 1116 VIDKRLWGWASPLRQFSV-LPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVK 1174
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGA-AQRWWIIVQDSESDHIY 596
Q + PS+ + A++ PITRTVL++ L I P+F+W D HG + WWI V+D +DHIY
Sbjct: 1175 QCVHQIPSVTMEASIQPITRTVLRVSLNIYPDFSWNDQVHGTVGEPWWIWVEDPTNDHIY 1234
Query: 597 HSELF-TLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
HSE F L K++ E Q L FT+PIFEP P QYYIRAVSD WL AEA I+F +L LP
Sbjct: 1235 HSEYFLALKKQVINKEAQLLVFTIPIFEPLPSQYYIRAVSDRWLGAEAVCIINFQHLILP 1294
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ HTELLDL+PLPVTALG YEALYNFSHFNP+QTQIFH LYHTD NVLLGAPTGS
Sbjct: 1295 ERHPPHTELLDLQPLPVTALGCKAYEALYNFSHFNPVQTQIFHTLYHTDCNVLLGAPTGS 1354
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKT++AELA+ +FN K VYIAPLKA+VRERM+DWK R+ +LGK+++E+TGD TP
Sbjct: 1355 GKTVAAELAIFRVFNKYPTSKAVYIAPLKALVRERMDDWKIRIEEKLGKKVIELTGDVTP 1414
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
D+ ++ AD+I++TPEKWDG+SR+W +R+YV++V ++I+DEIHLLG ERGP+LEVIVSR
Sbjct: 1415 DMKSIAKADLIVTTPEKWDGVSRSWQNRSYVQQVNILIIDEIHLLGEERGPVLEVIVSRT 1474
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
+ISS TE+ VR +GLSTALANA DLADWL + ++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1475 NFISSHTEKPVRIVGLSTALANARDLADWLNIKQMGLFNFRPSVRPVPLEVHIQGFPGQH 1534
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
YCPRM SMNKPA+ TH P +P L+ + R + +T L+LI F A++E P+Q+L M E
Sbjct: 1535 YCPRMASMNKPAFQESHTHCPDRPCLL-LPERMLSSMTKLELIAFLATEEDPKQWLNMDE 1593
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
++++ +++ V D NL+ TL FGIG+HHAGL+++DR VEELF N K+QVL+ TSTLAWGV
Sbjct: 1594 QEMENIIATVRDSNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKVQVLIATSTLAWGV 1653
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N PAHLVIIKGTEYYDGKT+RYVDFPITD+LQMMGRAGRPQ+D GKAVILVH+ KK FY
Sbjct: 1654 NFPAHLVIIKGTEYYDGKTRRYVDFPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDFY 1713
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEPFPVESSL L DH NAEI GTI K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1714 KKFLYEPFPVESSLLGVLSDHLNAEIAGGTITSKQDALDYITWTYFFRRLIMNPSYYNLG 1773
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMFG 1193
D + ++ +LS L+ + +LE S C+++ ED ++EP G IAS YYL + TV MF
Sbjct: 1774 DVSQDAINKFLSHLIGQSLVELELSHCIEVGEDNRSIEPLTCGRIASYYYLKHKTVKMFK 1833
Query: 1194 SNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANL 1253
+ P+ S E L ILS A EY +LPVRHNED+ N L++ + ++ + D PH KA+L
Sbjct: 1834 DRLKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIELNPHSFDSPHTKAHL 1893
Query: 1254 LFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313
L QAH SR LP DY TD K+VLDQ++R+ QAM+D+ A+ GWL +++ HL+QMV+QG
Sbjct: 1894 LLQAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTTLNITHLIQMVIQG 1953
Query: 1314 LWFEQDSALWMFPCMNNDLLGTLR----------ARGISTVQQLLDI--PKENLQTVIGN 1361
W +DS+L P + L R A+ ++++ L ++ E + V +
Sbjct: 1954 RWL-KDSSLLTIPNIEQHHLHLFRKWKPPVKGPHAKCRTSIECLPELIHACEGKEHVFSS 2012
Query: 1362 FPVSRLHQD--------LQRFPRIQVKLRLQRR---DIDGENSLTLN-IRMDKM--NSW- 1406
L L P I V + ++ ++G N L+++ + DK N+W
Sbjct: 2013 MVEKELQPAKTKQAWNFLSHLPVINVGISVKGSWDDSVEGHNELSISTLTADKRDENTWI 2072
Query: 1407 ------------------------KNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKR 1442
K+ S A RFPK+KDE W+L+LG + EL A+KR
Sbjct: 2073 KLHADQQYVLQVSLQRVHFEFHKVKHESHAVTPRFPKLKDEGWFLILGEVDKRELVAVKR 2132
Query: 1443 ISFSDRLNTHMELPSGITTFQG-----MKLVVVSDCYLGFEQEHSI 1483
+ F + TH E T + L ++SDCYLG +Q++ I
Sbjct: 2133 VGF---VRTHHEASISFFTPEAPGRYIFTLYLMSDCYLGLDQQYDI 2175
Score = 374 bits (959), Expect = e-102, Method: Compositional matrix adjust.
Identities = 251/793 (31%), Positives = 406/793 (51%), Gaps = 37/793 (4%)
Query: 668 KPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLH 727
KP+ + L A N IQ+ +F Y+T+ N+L+ APTG+GKT A L +LH
Sbjct: 457 KPVYIQDLDEVGQLAFKGMKRLNRIQSIVFDTAYNTNENMLICAPTGAGKTNIAMLTVLH 516
Query: 728 LFN--------TQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779
+++ K+VY+AP+KA+ E N + RL LG + E+TGD
Sbjct: 517 EIRQHFHQGVLKKNEFKIVYVAPMKALAAEMTNYFSKRL-EPLGIVVKELTGDMQLSKSE 575
Query: 780 LLSADIIISTPEKWDGISRNWHSRNYVKK-VGLMILDEIHLLGAERGPILEVIVSRMRYI 838
+L ++++TPEKWD ++R + + V L+ILDE+HLL +RGP+LE IV+R
Sbjct: 576 ILRTQMLVTTPEKWDVVTRKSVGDVALSQIVKLLILDEVHLLHEDRGPVLESIVARTLRQ 635
Query: 839 SSQTERAVRFIGLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGKFYC 897
T+ +R +GLS L N D+A +L V IGLF F RPVPL G
Sbjct: 636 VESTQSMIRILGLSATLPNYLDVATFLHVNPYIGLFYFDGRFRPVPLGQTFLGIKSANKM 695
Query: 898 PRMNSMNKPAYAAICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEE 956
++N+M++ Y ++ V++FV +R T TA+ LI+ A + FL
Sbjct: 696 QQLNNMDEVCYESVLKQVKAGHQVMVFVHARNATVRTAMSLIERAKNSGQISCFLPTQGP 755
Query: 957 DLQMVLSQVT---DQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013
+ L QV ++ +R+ G +HHAG+ +DR+LVE LF+N I+VLVCT+TLAW
Sbjct: 756 EYGHALKQVQKSRNKQVRELFSDGFSIHHAGMLRQDRNLVENLFSNGHIKVLVCTATLAW 815
Query: 1014 GVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073
GVNLPAH VIIKGT+ Y K +VD I D++Q+ GRAGRPQ+D+ G+ +I+ K S
Sbjct: 816 GVNLPAHAVIIKGTQIYAAKRGSFVDLGILDVMQIFGRAGRPQFDKFGEGIIITTHDKLS 875
Query: 1074 FYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYG 1133
Y L + P+ES + L D+ NAEI GT+ + E+AV ++S+TYL+ R+ NP YG
Sbjct: 876 HYLSLLTQQNPIESQFLESLADNLNAEIALGTVTNVEEAVKWMSYTYLYVRMRANPLAYG 935
Query: 1134 LEDTEAE---GLSSYLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVT 1188
+ + L + +L+ + L+ + ++ E T T LG AS YY+ Y T
Sbjct: 936 ISHKAYQMDPTLRKHREQLLIEVGQKLDKARMIRFEERTGYFSSTDLGRTASHYYIKYNT 995
Query: 1189 VSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPH 1248
+ F + I+S A E+D++ VR E +AL +++ +
Sbjct: 996 IETFNELFDAHKTEGDIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSY 1055
Query: 1249 VKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQ 1308
K N+L Q + SR ++ ++D V + RI++A+ +I W + + ++L +
Sbjct: 1056 GKINILLQTYISRGEMDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSK 1115
Query: 1309 MVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVS-RL 1367
++ + LW S L F + +L L + + TV +L D+ K+ + ++ + + ++
Sbjct: 1116 VIDKRLW-GWASPLRQFSVLPPHILTRLEEKNL-TVDKLKDMRKDEIGHILHHVNIGLKV 1173
Query: 1368 HQDLQRFPRIQVKLRLQ--RRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAW 1425
Q + + P + ++ +Q R + ++LNI D SW + E W
Sbjct: 1174 KQCVHQIPSVTMEASIQPITRTV---LRVSLNIYPD--FSWNDQVHGTV-------GEPW 1221
Query: 1426 WLVLGNTNTSELY 1438
W+ + + +Y
Sbjct: 1222 WIWVEDPTNDHIY 1234
>sp|Q54G57|HELC1_DICDI Activating signal cointegrator 1 complex subunit 3 OS=Dictyostelium
discoideum GN=ascc3 PE=3 SV=1
Length = 2195
Score = 1530 bits (3961), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 766/1539 (49%), Positives = 1049/1539 (68%), Gaps = 68/1539 (4%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPN-- 58
VE+TQ MIRIVGLSATLPNY +VA+F+R P G FFDSSYRP+PL Q +IG+ +
Sbjct: 641 VETTQEMIRIVGLSATLPNYKDVARFIRA-PASGTHFFDSSYRPVPLTQNFIGVKDNQGI 699
Query: 59 FAARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDT 118
+N + +++CY+++ SL++GHQ M+FVHSRKDTVK+A+ L D+A+ E F+N+
Sbjct: 700 MVMKNNM-NQLCYERLEKSLKEGHQVMIFVHSRKDTVKSAEILSDMAK--EKHFRFSNE- 755
Query: 119 HPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATL 178
P KK+ K ++K++ LF + VHHAG+LRSDR + E+ F+ G +KVLVCTATL
Sbjct: 756 EPSFGA-KKEFEKVKSKEIRSLFQHGISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATL 814
Query: 179 AWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDK 235
AWGVNLPAHTV+IKGTQ+Y+ K GG+ DLG+ D IFGRAGRPQFD SGEG ++TS DK
Sbjct: 815 AWGVNLPAHTVIIKGTQVYNAKNGGFMDLGISDVMQIFGRAGRPQFDTSGEGFLLTSKDK 874
Query: 236 LAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLA 295
L +YL L++S +PIES+FI++L+D+LNAE+ LGTV+NV EA WL YTYL IRM NPL
Sbjct: 875 LDHYLSLMSSSMPIESKFITNLEDHLNAEIVLGTVSNVNEAVNWLSYTYLFIRMLQNPLV 934
Query: 296 YGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQY 355
YGI + DP L +R ++ AA+ L++ KM RFDE+S N TELGRIASH+YI++
Sbjct: 935 YGIPSSQRSKDPQLEEFKREIIIRAAKKLEQCKMTRFDEQSENLGMTELGRIASHYYIKH 994
Query: 356 SSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSN 415
S+ET+NEML + +V+ ++S+SSEFENI +R+EE EL+ L + C E+ S
Sbjct: 995 PSIETFNEMLNDQLGQDQVLNILSNSSEFENITLREEESTELDKLAENQCYYELTVLDS- 1053
Query: 416 KHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEY 475
H K+ L+Q + SR ID FSLVSD+ Y + +RI+R LFE L++GWC +S +L+
Sbjct: 1054 -HSKVKCLLQAFFSRANIDGFSLVSDSNYTVQNSSRILRGLFEISLKKGWCTVSKTILDL 1112
Query: 476 CKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRL 535
CK VD Q+W + PLRQ K L + +RK+EER +R+ +ME ++ ++ +
Sbjct: 1113 CKMVDHQLWHFESPLRQ-AKVLSLDTIRKIEERDWTPERICDMEIGELSFVLGNQLIAKT 1171
Query: 536 VKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHI 595
++ FP + V PIT +++I + + P F+W D HG +Q +WI VQD+ES +I
Sbjct: 1172 TRKIAQQFPQLDFEIQVQPITANIIRINMTLIPMFSWNDKMHGDSQPFWIWVQDNESQYI 1231
Query: 596 YHSELFTLTKRM-ARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLAL 654
+HSE F LTK++ + E L+ +P+ P P Q+++ +SD WL +E ISF +L L
Sbjct: 1232 FHSEYFMLTKKIYNQTEPITLTCIIPLPNPMPSQFFLHYISDRWLGSEGIREISFRHLVL 1291
Query: 655 PQA-RTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPT 713
PQ R +TELLDL+PLP AL N +E+L+ FSHFNPIQTQ+FH LY+T+NNVLLG+PT
Sbjct: 1292 PQQDRVVNTELLDLQPLPKEALKNKDFESLFKFSHFNPIQTQVFHTLYYTNNNVLLGSPT 1351
Query: 714 GSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDY 773
GSGKTI AELAM +F + MKVVYIAPLKA+VRERMNDWK + +LGK++VE+TGDY
Sbjct: 1352 GSGKTICAELAMFKVFRDEPHMKVVYIAPLKALVRERMNDWKVKFQEKLGKKLVELTGDY 1411
Query: 774 TPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVS 833
TP+++AL +ADI+ +TPEKWDGISRNW +R+YV V L+I+DEIHL+G RGPILEVIVS
Sbjct: 1412 TPNMIALQNADIVTTTPEKWDGISRNWKNRSYVTSVSLLIIDEIHLIGELRGPILEVIVS 1471
Query: 834 RMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPG 893
RM+ IS QT +R +GLSTA+ANA DL++W+G+ +GLFNF+PS RPVP+EVHIQG+ G
Sbjct: 1472 RMKLISKQTGVNIRVVGLSTAMANAIDLSEWMGIDRVGLFNFRPSCRPVPIEVHIQGFQG 1531
Query: 894 KFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGM 953
K YCPRM +MNKP++AAI T+SP KPVLIFVSSRRQTRLTALDLI + D P Q++
Sbjct: 1532 KNYCPRMQTMNKPSFAAIATYSPKKPVLIFVSSRRQTRLTALDLISYLVVDNDPLQWI-Q 1590
Query: 954 PEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013
D++ L++V DQ+LR TL FGIG+HHAGLND DR++VE LF NKIQ+L+ TSTLAW
Sbjct: 1591 KGFDIEPTLARVKDQHLRHTLSFGIGMHHAGLNDGDRTIVESLFGENKIQILISTSTLAW 1650
Query: 1014 GVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073
GVNLPAHLVIIKGTEY+DGKTKRYVDFP+TD+LQM+GRAGRPQ+D+ GKA+++VHEPKK
Sbjct: 1651 GVNLPAHLVIIKGTEYFDGKTKRYVDFPLTDVLQMIGRAGRPQFDKEGKAMVMVHEPKKQ 1710
Query: 1074 FYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYG 1133
FYKKFLY+PFPVES L+D LHDH NAEIVSGTI K+ A++YL T+ FRRL ++P+YYG
Sbjct: 1711 FYKKFLYDPFPVESHLKDFLHDHLNAEIVSGTIQSKQGAINYLVNTFFFRRLVVSPSYYG 1770
Query: 1134 LEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTE-DTVEPTMLGTIASQYYLSYVTVSMF 1192
LED E ++ YLS L+ +T DLE S C+++ E D + P +G IAS YYL+Y TV F
Sbjct: 1771 LEDNSVEAVNQYLSDLLDSTLADLEQSSCIEINEYDEIIPMSMGKIASFYYLNYKTVQNF 1830
Query: 1193 GSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKAN 1252
NI D+ ++ L +LS A+EY E PVRHNE+ N+ L++ + + N +D H K +
Sbjct: 1831 SDNIKRDSDIKTLLRVLSDAAEYSEFPVRHNEEILNQELNENLPIKIGN--YEDSHTKVH 1888
Query: 1253 LLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQ 1312
LL QAHF R LPI+D+ TD KS LDQ IRI+QAMID+ G+ +++I + LLQM++Q
Sbjct: 1889 LLLQAHFQRCPLPITDFTTDTKSALDQGIRILQAMIDVSFEYGYFATAIQVIRLLQMLVQ 1948
Query: 1313 GLWFEQDSALWMFPCMNNDLLGTLRA-------RGISTVQQLLDIPKENLQTVIGNFPV- 1364
G W + DS+L P +N D L + IS + +L IP++ + + N +
Sbjct: 1949 GRW-DYDSSLMTLPHINKDFADFLSSNLILSNGEQISNLSDMLKIPRDKIHLSLTNIGLS 2007
Query: 1365 -SRLHQDLQ---RFPRIQVKLRL-------------------------------QRRDID 1389
S++ + L P+++++ + + +
Sbjct: 2008 DSQIKETLNVIDHLPKVKIEYFINTNNNSNNNDDNNNENNNNNNKKNNNNNNNNNKSIVY 2067
Query: 1390 GENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRIS--FSD 1447
+ I++ + N + AFA + K KDE W +VL + ++ KR+ S+
Sbjct: 2068 SGQEFNIKIKVTRENKKFSNGHAFAPLYSKDKDEGWIMVLTD-EKEQMIGFKRVPQMISN 2126
Query: 1448 RLNTHMELPSG-ITTFQGMKLVVVSDCYLGFEQEHSIEA 1485
+ + ++P + + + SD Y+G + H+ +
Sbjct: 2127 SVTANFKIPKAPFQSSTNYNVKLYSDTYMGLDYFHTFQV 2165
Score = 390 bits (1002), Expect = e-107, Method: Compositional matrix adjust.
Identities = 266/798 (33%), Positives = 412/798 (51%), Gaps = 57/798 (7%)
Query: 652 LALPQA-----RTSHTELLD----LKPLP----VTALGNNIYE----ALYNFSHFNPIQT 694
+ALP+ +T+HTE++ KP + +G +I E A + N IQ+
Sbjct: 429 IALPKGTVRTEKTTHTEVMVPYSLAKPFADNEKLIEIGESIAEISRAAFGSIKKLNRIQS 488
Query: 695 QIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT---------QSDMKVVYIAPLKA 745
++F Y ++ N+L+ APTG+GKT A L +LH + + + K++YIAPLKA
Sbjct: 489 RVFESAYKSNENILISAPTGAGKTNIALLTILHEIESNINPYGYLDKDNFKIIYIAPLKA 548
Query: 746 IVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNY 805
+ E + + + L LG E+TGD L II++TPEKWD I+R
Sbjct: 549 LASEMVEKFSNSL-KYLGIVSKELTGDMQLTQKELKETQIIVTTPEKWDVITRKSSDVAL 607
Query: 806 VKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWL 865
K V L+I+DEIHLL ERGP+LE IV+R T+ +R +GLS L N D+A ++
Sbjct: 608 TKLVRLIIIDEIHLLHEERGPVLECIVARTLRQVETTQEMIRIVGLSATLPNYKDVARFI 667
Query: 866 GVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM-NSMNKPAYAAI-CTHSPTKPVLIF 923
G F S RPVPL + G M N+MN+ Y + + V+IF
Sbjct: 668 RAPASGTHFFDSSYRPVPLTQNFIGVKDNQGIMVMKNNMNQLCYERLEKSLKEGHQVMIF 727
Query: 924 VSSRRQTRLTALDLIQFAA------SDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFG 977
V SR+ T +A L A S+E P G +E +V + +R Q G
Sbjct: 728 VHSRKDTVKSAEILSDMAKEKHFRFSNEEPS--FGAKKE-----FEKVKSKEIRSLFQHG 780
Query: 978 IGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRY 1037
I +HHAGL DR++VE+ FAN I+VLVCT+TLAWGVNLPAH VIIKGT+ Y+ K +
Sbjct: 781 ISVHHAGLLRSDRNVVEKYFANGTIKVLVCTATLAWGVNLPAHTVIIKGTQVYNAKNGGF 840
Query: 1038 VDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHF 1097
+D I+D++Q+ GRAGRPQ+D G+ +L + K Y + P+ES L DH
Sbjct: 841 MDLGISDVMQIFGRAGRPQFDTSGEGFLLTSKDKLDHYLSLMSSSMPIESKFITNLEDHL 900
Query: 1098 NAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEG---LSSYLSRLVQNTF 1154
NAEIV GT+ + +AV++LS+TYLF R+ NP YG+ ++ L + ++
Sbjct: 901 NAEIVLGTVSNVNEAVNWLSYTYLFIRMLQNPLVYGIPSSQRSKDPQLEEFKREIIIRAA 960
Query: 1155 EDLEDSGCVKMTE--DTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGA 1212
+ LE + E + + T LG IAS YY+ + ++ F + + L+ILS +
Sbjct: 961 KKLEQCKMTRFDEQSENLGMTELGRIASHYYIKHPSIETFNEMLNDQLGQDQVLNILSNS 1020
Query: 1213 SEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTD 1272
SE++ + +R E + L++ + + D H K L QA FSR ++ V+D
Sbjct: 1021 SEFENITLREEESTELDKLAENQCYY--ELTVLDSHSKVKCLLQAFFSRANIDGFSLVSD 1078
Query: 1273 LKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLW-FEQDSALWMFPCMNND 1331
+ S RI++ + +I GW + S T + L +MV LW FE S L ++ D
Sbjct: 1079 SNYTVQNSSRILRGLFEISLKKGWCTVSKTILDLCKMVDHQLWHFE--SPLRQAKVLSLD 1136
Query: 1332 LLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDL-QRFPRIQVKLRLQRRDIDG 1390
+ + R T +++ D+ L V+GN +++ + + Q+FP++ ++++Q
Sbjct: 1137 TIRKIEERDW-TPERICDMEIGELSFVLGNQLIAKTTRKIAQQFPQLDFEIQVQPI---T 1192
Query: 1391 ENSLTLNIRMDKMNSWKN 1408
N + +N+ + M SW +
Sbjct: 1193 ANIIRINMTLIPMFSWND 1210
>sp|E7F8F4|ASCC3_DANRE Activating signal cointegrator 1 complex subunit 3 OS=Danio rerio
GN=ascc3 PE=3 SV=2
Length = 1534
Score = 1485 bits (3844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 726/1352 (53%), Positives = 942/1352 (69%), Gaps = 103/1352 (7%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
VESTQ MIRI+GLSATLPNYL+VA FL VNP +GLF+FDS +RP+PL Q ++GI N
Sbjct: 233 VESTQSMIRILGLSATLPNYLDVATFLHVNPFIGLFYFDSRFRPVPLGQSFVGIKTTNKV 292
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ + E+CY+KV+ ++ GHQ MVFVH+R TV+TA L+++A+ +L F D
Sbjct: 293 QQLHDMEEVCYEKVLKQIKAGHQVMVFVHARNSTVRTAMSLIEMAKNRGELSFFQVDQGA 352
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+K + +SRNK + E+F G+HHAGMLR DR L E +FS G LKVLVCTATLAW
Sbjct: 353 DYGQCEKQIQRSRNKQMREMFPDGFGIHHAGMLRQDRSLMESMFSRGYLKVLVCTATLAW 412
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAH V+IKGT +YD K G DLG+LD IFGRAGRPQFD+ GEG IIT+HDKL+
Sbjct: 413 GVNLPAHAVIIKGTNIYDAKRGTLVDLGILDVMQIFGRAGRPQFDKYGEGTIITTHDKLS 472
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LLT Q PIESQF SL DNLNAE+ALGTVTNV EA WL YTYL +RM+ NPLAYG
Sbjct: 473 HYLTLLTQQNPIESQFQQSLADNLNAEIALGTVTNVDEAVRWLSYTYLYVRMRANPLAYG 532
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I DP L L ++ LV ++ R LDKA+M+RFDE++G F T+LGR ASHFYI+Y++
Sbjct: 533 INHKAYQMDPQLELYRKELVVESGRKLDKARMIRFDERTGYFASTDLGRTASHFYIKYNT 592
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVR-DEEQNELETLVQTLCPVEVKGGPSNK 416
+E++NE+ +++V+ +VS + EFE I VR EE + ++ VQ LC +
Sbjct: 593 IESFNELFNAQNTEADVLSIVSKAEEFEQIKVRVQEEDADGKSSVQILC--------GSH 644
Query: 417 HGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYC 476
H + ARIMRALFE LR+ W M+ +L C
Sbjct: 645 H-----------------------------TNAARIMRALFEMALRKRWPAMTYRLLNLC 675
Query: 477 KAVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLV 536
K +D+++W HPLRQF+ LPA L ++E++ +D+L++M + +IG ++ + G V
Sbjct: 676 KVMDKRLWGWAHPLRQFNT-LPASALARMEDKNLTIDKLRDMGKDEIGHMLHHVNIGLKV 734
Query: 537 KQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGA-AQRWWIIVQDSESDHI 595
KQ + P+I L +++ PITRTVL++ L+ITP+F W D HG+ + WW+ V+D +DHI
Sbjct: 735 KQCVHQIPAILLESSIQPITRTVLRVRLSITPDFRWNDQVHGSVGEPWWLWVEDPINDHI 794
Query: 596 YHSELFTLTKR-MARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLAL 654
YHSE F L K+ + GE Q++ FT+PIFEP P QYYIRAVSD WL +EA I+F +L L
Sbjct: 795 YHSEYFLLQKKQVVSGEPQQVVFTIPIFEPMPSQYYIRAVSDRWLGSEAVCIINFQHLIL 854
Query: 655 PQARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTG 714
P+ HTELLDL+PLP+TALGN YE+LY F+H+NPIQTQIFH LYHTD NVLLGAPTG
Sbjct: 855 PERHPPHTELLDLQPLPITALGNREYESLYKFTHYNPIQTQIFHTLYHTDTNVLLGAPTG 914
Query: 715 SGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYT 774
SGKTI+AE+A+ +FN KVVYIAPLKA+VRER+ DWK R+ +LG+++VE+TGD T
Sbjct: 915 SGKTIAAEMAIFRVFNMYPTSKVVYIAPLKALVRERIEDWKIRIEEKLGRKVVELTGDNT 974
Query: 775 PDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSR 834
PD+ A+ AD+I++TPEKWDG+SR+W +R+YV+KV ++I+DEIHLLG +RGP+LEVIVSR
Sbjct: 975 PDMRAIAQADLIVTTPEKWDGVSRSWQNRSYVQKVAILIIDEIHLLGEDRGPVLEVIVSR 1034
Query: 835 MRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGK 894
+ISS T + VR +GLSTALANA DLADWLG+G++GLFNF+PSVRPVPLEVHIQG+PG+
Sbjct: 1035 TNFISSHTSKTVRVVGLSTALANARDLADWLGIGQVGLFNFRPSVRPVPLEVHIQGFPGQ 1094
Query: 895 FYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP 954
YCPRM +MNKP + AI THSP KPVLIFVSSRRQTRLTALDLI F A+++ P+Q+L
Sbjct: 1095 HYCPRMATMNKPVFQAIRTHSPAKPVLIFVSSRRQTRLTALDLIAFLATEDDPKQWLHQD 1154
Query: 955 EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWG 1014
E ++ +++ + + NL+ TL FGIG+HHAGL+++DR VEELF N KIQVL+ TSTLAWG
Sbjct: 1155 EREMTDIIATIRESNLKLTLAFGIGMHHAGLHERDRKTVEELFVNCKIQVLIATSTLAWG 1214
Query: 1015 VNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF 1074
VN PAHLVI+KGTEYYDGKT+RYVD+PITD+LQMMGRAGRPQ+D GKAVILVH+ KK F
Sbjct: 1215 VNFPAHLVIVKGTEYYDGKTRRYVDYPITDVLQMMGRAGRPQFDDQGKAVILVHDIKKDF 1274
Query: 1075 YKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGL 1134
YKKFLYEPFPVESSL L DH NAEI +GT+ K+DA+ Y++WTY FRRL +NP+YY L
Sbjct: 1275 YKKFLYEPFPVESSLLSVLSDHLNAEIAAGTVTSKQDAMDYITWTYFFRRLVMNPSYYNL 1334
Query: 1135 EDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED--TVEPTMLGTIASQYYLSYVTVSMF 1192
+D E ++ YLS LV+ + DLE S C+++ +D T+EP G I+S YYL + T+ MF
Sbjct: 1335 DDISHETINKYLSNLVERSLRDLECSYCMEIQQDEQTIEPLTYGRISSYYYLKHQTIRMF 1394
Query: 1193 GSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKAN 1252
+ P+ + L ILS
Sbjct: 1395 KERLKPELPVHELLAILS------------------------------------------ 1412
Query: 1253 LLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQ 1312
LP SDY TD K+VLD +IRI QAM+D+ AN GWL S+++ +L+QM++Q
Sbjct: 1413 -----------LPCSDYGTDTKTVLDNAIRICQAMLDVVANEGWLVSALSLCNLVQMIIQ 1461
Query: 1313 GLWFEQDSALWMFPCMNNDLLGTLR---ARGI 1341
W DS+L P + L R +RG+
Sbjct: 1462 ARWL-HDSSLLTLPHIQKQELYVFRRWSSRGV 1492
Score = 331 bits (849), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 212/631 (33%), Positives = 325/631 (51%), Gaps = 51/631 (8%)
Query: 639 LHAEAFYCISFHNLALPQA-------RTSHTELLDLKPLPV------------TALGNNI 679
+HA I F + LP+ E+ +P+P+ +G +
Sbjct: 8 IHANEKAQIDFAQMLLPEGIRRDNNKMYEEVEIPPNEPMPIGFEEKAVFVSELDEIGQLV 67
Query: 680 YEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-------- 731
++ + N IQ+ +F Y+T+ N+L+ APTG+GKT A L +LH
Sbjct: 68 FKGM---KRLNRIQSIVFETAYNTNENLLICAPTGAGKTNIAMLTILHEIRQHLQPGGVI 124
Query: 732 -QSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTP 790
+ K+VY+AP+KA+ E N + RL LG + E+TGD +L ++++TP
Sbjct: 125 RKDQFKIVYVAPMKALAAEMTNYFSKRL-EPLGIAVKELTGDMQLTKGEILRTQMLVTTP 183
Query: 791 EKWDGISRNWHSRNYVKKV-GLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFI 849
EKWD ++R + +V L+ILDE+HLL +RGP+LE +V+R T+ +R +
Sbjct: 184 EKWDVVTRKSVGDVALSQVVRLLILDEVHLLHEDRGPVLESLVARTLRQVESTQSMIRIL 243
Query: 850 GLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAY 908
GLS L N D+A +L V IGLF F RPVPL G +++ M + Y
Sbjct: 244 GLSATLPNYLDVATFLHVNPFIGLFYFDSRFRPVPLGQSFVGIKTTNKVQQLHDMEEVCY 303
Query: 909 AAICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQF-------LGMPEEDLQM 960
+ V++FV +R T TA+ LI+ A + F G E+ +Q
Sbjct: 304 EKVLKQIKAGHQVMVFVHARNSTVRTAMSLIEMAKNRGELSFFQVDQGADYGQCEKQIQ- 362
Query: 961 VLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAH 1020
+ ++ +R+ G G+HHAG+ +DRSL+E +F+ ++VLVCT+TLAWGVNLPAH
Sbjct: 363 ---RSRNKQMREMFPDGFGIHHAGMLRQDRSLMESMFSRGYLKVLVCTATLAWGVNLPAH 419
Query: 1021 LVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLY 1080
VIIKGT YD K VD I D++Q+ GRAGRPQ+D++G+ I+ K S Y L
Sbjct: 420 AVIIKGTNIYDAKRGTLVDLGILDVMQIFGRAGRPQFDKYGEGTIITTHDKLSHYLTLLT 479
Query: 1081 EPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAE 1140
+ P+ES + L D+ NAEI GT+ + ++AV +LS+TYL+ R+ NP YG+ +
Sbjct: 480 QQNPIESQFQQSLADNLNAEIALGTVTNVDEAVRWLSYTYLYVRMRANPLAYGINHKAYQ 539
Query: 1141 ---GLSSYLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVTVSMFGSN 1195
L Y LV + L+ + ++ E T T LG AS +Y+ Y T+ F
Sbjct: 540 MDPQLELYRKELVVESGRKLDKARMIRFDERTGYFASTDLGRTASHFYIKYNTIESFNEL 599
Query: 1196 IGPDTSLEVFLHILSGASEYDELPVRHNEDN 1226
+ L I+S A E++++ VR E++
Sbjct: 600 FNAQNTEADVLSIVSKAEEFEQIKVRVQEED 630
>sp|O60072|MUG81_SCHPO Putative helicase mug81 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mug81 PE=1 SV=1
Length = 1935
Score = 1388 bits (3593), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 712/1502 (47%), Positives = 993/1502 (66%), Gaps = 51/1502 (3%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGI-SEPNF 59
VE++Q+MIRIVGLSATLPNYL+VA FL VN GLF+F S++RP P+ Q +IG P
Sbjct: 445 VETSQQMIRIVGLSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCPIEQHFIGAKGSPKI 504
Query: 60 AARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTH 119
N + E C+ KV+ +++GHQ M+FVHSRK+T+ +A+KL + + ++ +N H
Sbjct: 505 VNSN--IDEACFDKVLKLIQEGHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQH 562
Query: 120 PQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLA 179
+ SL ++DV KS+NK+L ELF ++G+H+AGMLRSDR LTERLFS G+LK+L CTATLA
Sbjct: 563 EKYSLAQRDVSKSKNKELKELFKYSMGIHNAGMLRSDRHLTERLFSMGILKILCCTATLA 622
Query: 180 WGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKL 236
WGVNLPA+ V+IKGTQLYDP+ G + DLG+LD IFGRAGRPQF+ S IIT+HDKL
Sbjct: 623 WGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAGRPQFESSAVAYIITTHDKL 682
Query: 237 AYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAY 296
++Y+ ++T Q PIES+F L DNLNAEV+LGTVTN+ EA +WLGYTYL IRM+ NPL Y
Sbjct: 683 SHYISVVTQQSPIESRFTDRLVDNLNAEVSLGTVTNIDEAVSWLGYTYLYIRMRRNPLVY 742
Query: 297 GIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYS 356
GI +DE++ DP L K+R LV+ AA L +M+ +++K+G +LGRIAS++YI Y
Sbjct: 743 GIAYDELVEDPLLGSKRRELVSVAAGRLADNQMIVYNKKNGYLIPKDLGRIASNYYINYQ 802
Query: 357 SVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNK 416
+V T N +L+ M+++++I ++S SEF I R+ E ELE+L++ P +++ SN
Sbjct: 803 TVSTLNNLLKSKMSEADIIALLSQCSEFSQIKSRENEHRELESLMENSSPCQLRDSISNT 862
Query: 417 HGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYC 476
GK+++++Q YISR ++ F+L SD Y++ + RI RALFE + R W + +L
Sbjct: 863 SGKVNVILQSYISRAHVEDFTLTSDTNYVAQNAGRITRALFEIAMSRTWAS-AFTILSLN 921
Query: 477 KAVDRQIWPHQHPLRQFDKELPAEILRKLEERGADL--DRLQEMEEKDIGALIRYTPGGR 534
K++DR+ W +HPL QFD LP ++ K+E + L + L +M ++G LI G
Sbjct: 922 KSIDRRQWSFEHPLLQFD--LPHDLAVKVENQCGSLSLEELSDMSTGELGDLIHNRKMGP 979
Query: 535 LVKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDH 594
VK+++ P + ++ + P+T+ VL++ L ITP F W +HG +Q +WI V+DS
Sbjct: 980 TVKKFISKLPLLNINVDLLPLTKNVLRLVLNITPNFNWDMRYHGNSQMFWIFVEDSNGLE 1039
Query: 595 IYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLAL 654
I H E L KR + LSFT+P+ P P Q YI AVSD WL AE +S N+
Sbjct: 1040 ILHHEQLLLNKRNV-STSHLLSFTIPVSNPLPSQLYIIAVSDKWLGAETVTPVSLSNVVF 1098
Query: 655 PQARTSHTELLDLKPLPVTALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAP 712
TELLDL+PLP+TAL + + E + FS FN +QTQ FH +YHTD N+ +GAP
Sbjct: 1099 HDDSNPITELLDLQPLPITALHDPVLEGICAKRFSFFNAVQTQFFHTIYHTDTNIFVGAP 1158
Query: 713 TGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGD 772
TGSGKT++AELA + KVVYIAP+KA+V+ER+ DW RLV +G M+E+TGD
Sbjct: 1159 TGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDWGHRLVEPMGISMIELTGD 1218
Query: 773 YTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIV 832
PD+ A+ +A+III+TPEKWDGI+R+W SR YV+ V L+ILDEIHLLG++RGP+LE+IV
Sbjct: 1219 TNPDVKAVTNANIIITTPEKWDGITRSWKSRKYVQDVSLIILDEIHLLGSDRGPVLEMIV 1278
Query: 833 SRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYP 892
SRM Y++SQT + VR +GLSTA+ANA DLA+WL + + GLFNF+ SVRPVPLE++I G+P
Sbjct: 1279 SRMNYVASQTNKKVRVLGLSTAVANANDLANWLNIRD-GLFNFRHSVRPVPLEIYIDGFP 1337
Query: 893 GKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG 952
G+ YCPRM SMNKPA+ AI THSPT+PVLIFVSSRRQTRLTA DLI F ++ PR+FL
Sbjct: 1338 GRAYCPRMMSMNKPAFQAIKTHSPTQPVLIFVSSRRQTRLTAKDLIAFCGLEDNPRRFLY 1397
Query: 953 MPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLA 1012
M EE+L+M++S+V D++L+ L FGI LHHAGL + DR + EELF NNK+Q+L+ TSTLA
Sbjct: 1398 MDEEELEMIVSEVEDKSLKLALPFGIALHHAGLTENDRKISEELFVNNKVQILIATSTLA 1457
Query: 1013 WGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072
WGVN PAHLVI+KGTEYYD K Y D +TD+LQM+GRAGRPQ+D G A I V + KK
Sbjct: 1458 WGVNTPAHLVIVKGTEYYDAKIGGYKDMDLTDVLQMLGRAGRPQFDNSGVARIFVQDIKK 1517
Query: 1073 SFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYY 1132
SFYK FL+ FPVES L L +H NAEI +GTI + A+ +L+ TY +RR+ NP YY
Sbjct: 1518 SFYKHFLHSGFPVESYLHKVLDNHLNAEIATGTIDCIQGAMDFLTCTYFYRRVHQNPVYY 1577
Query: 1133 GLEDTEAEGLSSYLSRLVQNTFEDLEDSGCV-KMTEDTVEPTMLGTIASQYYLSYVTVSM 1191
G + + + + +YLS+LV F +LE S C+ ++ E+T PT LG I S YYL + T+
Sbjct: 1578 GADGDDQKSIDTYLSKLVVTAFNELEKSACIYRVNEETYAPTTLGRIVSYYYLFHTTIRN 1637
Query: 1192 FGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRF--AVDNNRLDDPHV 1249
F I + ++ L +L+ ASE+D+L +RHNED N +++ +++ A N + D HV
Sbjct: 1638 FVQKITENAEFDLALQLLAEASEFDDLAIRHNEDLINIEINKSLKYSAACLNLPMVDAHV 1697
Query: 1250 KANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQM 1309
KA +L QAH +RL LP+ DYVTD +VLDQ IRIIQ+ ID+ A G+ + + L+Q
Sbjct: 1698 KAFILTQAHMARLKLPVDDYVTDTSTVLDQVIRIIQSYIDVSAELGYSHVCLQYISLMQC 1757
Query: 1310 VMQGLWFEQDSALWMFPCMN-------NDLLGTLRARGISTVQQLLDIPKENLQTVIGNF 1362
+ Q + + P +N D L + Q+L N+ F
Sbjct: 1758 LKQAC-YPSEIYRASLPGLNASSEKEARDYLNKFAGNKTDELYQML-CNDPNV------F 1809
Query: 1363 PVSRLHQDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTS-RAFALRFPKIK 1421
+ L L +P++ +++ D L L +R ++N N FA FPK +
Sbjct: 1810 DIESLVNSLISYPKMNIEVSQSSSD-----KLLLYLR--RLNQPLNPDFYIFAPLFPKPQ 1862
Query: 1422 DEAWWLVLGNTNTSELYALKRISFSDRLN---------THMELPSGITTFQGMKLVVVSD 1472
E +++++ ++ T EL+A++R SF+ R N M++P + +K++VV D
Sbjct: 1863 SEGFFVLIIDSETQELFAIRRASFAGRRNDDSIRLSLRISMDIPPTCRN-RNVKVMVVCD 1921
Query: 1473 CY 1474
Y
Sbjct: 1922 GY 1923
Score = 334 bits (856), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 230/739 (31%), Positives = 380/739 (51%), Gaps = 66/739 (8%)
Query: 668 KPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLH 727
K L ++++ + ++ N IQ+ ++ I Y T+ N+L+ APTG+GKT A LAML
Sbjct: 257 KLLEISSMDILCRKTFLSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQ 316
Query: 728 LFNT-----------------QSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMT 770
+ + D K+VYIAP+KA+ E + RL + LG + E+T
Sbjct: 317 TISNYVESMNLMDESEPLDVHRDDFKIVYIAPMKALAAEVVEKMGKRL-AWLGLKTRELT 375
Query: 771 GDYTPDLMALLSADIIISTPEKWDGISR-NWHSRNYVKKVGLMILDEIHLLGAERGPILE 829
GD + I+++TPEKWD ++R + +KV L+I+DE+H+L ERG ++E
Sbjct: 376 GDMQLTKTEIAETQILVTTPEKWDVVTRKSVGDTQLAEKVRLVIIDEVHMLHDERGAVIE 435
Query: 830 VIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEI-GLFNFKPSVRPVPLEVHI 888
+V+R + + +++ +R +GLS L N D+AD+LGV GLF F + RP P+E H
Sbjct: 436 SLVARTQRLVETSQQMIRIVGLSATLPNYLDVADFLGVNRYKGLFYFSSAFRPCPIEQHF 495
Query: 889 QGYPGKFYCPRM--NSMNKPAYAAICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDE 945
G G P++ +++++ + + V+IFV SR++T +A L +
Sbjct: 496 IGAKGS---PKIVNSNIDEACFDKVLKLIQEGHQVMIFVHSRKETINSAKKLRE------ 546
Query: 946 TPRQFLGMPEEDL------------QMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLV 993
QF E DL Q +S+ ++ L++ ++ +G+H+AG+ DR L
Sbjct: 547 ---QFFHEGEADLLDNSQHEKYSLAQRDVSKSKNKELKELFKYSMGIHNAGMLRSDRHLT 603
Query: 994 EELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAG 1053
E LF+ +++L CT+TLAWGVNLPA+ V+IKGT+ YD + +VD + D+LQ+ GRAG
Sbjct: 604 ERLFSMGILKILCCTATLAWGVNLPAYAVLIKGTQLYDPQKGSFVDLGVLDVLQIFGRAG 663
Query: 1054 RPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAV 1113
RPQ++ A I+ K S Y + + P+ES D+L D+ NAE+ GT+ + ++AV
Sbjct: 664 RPQFESSAVAYIITTHDKLSHYISVVTQQSPIESRFTDRLVDNLNAEVSLGTVTNIDEAV 723
Query: 1114 HYLSWTYLFRRLAINPAYYGL---EDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDT- 1169
+L +TYL+ R+ NP YG+ E E L S LV L D+ + +
Sbjct: 724 SWLGYTYLYIRMRRNPLVYGIAYDELVEDPLLGSKRRELVSVAAGRLADNQMIVYNKKNG 783
Query: 1170 -VEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHN 1228
+ P LG IAS YY++Y TVS + + S + +LS SE+ ++ R NE
Sbjct: 784 YLIPKDLGRIASNYYINYQTVSTLNNLLKSKMSEADIIALLSQCSEFSQIKSRENEHREL 843
Query: 1229 EALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMI 1288
E+L + + + + K N++ Q++ SR + +D V + RI +A+
Sbjct: 844 ESLMENSSPCQLRDSISNTSGKVNVILQSYISRAHVEDFTLTSDTNYVAQNAGRITRALF 903
Query: 1289 DICANSGWLSSSITCMHLLQMVMQGLW-FEQDSALWMFPCMNNDLLGTLRAR-----GIS 1342
+I + W +S+ T + L + + + W FE P + DL L + G
Sbjct: 904 EIAMSRTW-ASAFTILSLNKSIDRRQWSFEH-------PLLQFDLPHDLAVKVENQCGSL 955
Query: 1343 TVQQLLDIPKENLQTVIGN 1361
++++L D+ L +I N
Sbjct: 956 SLEELSDMSTGELGDLIHN 974
>sp|O75643|U520_HUMAN U5 small nuclear ribonucleoprotein 200 kDa helicase OS=Homo sapiens
GN=SNRNP200 PE=1 SV=2
Length = 2136
Score = 1350 bits (3495), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 662/1499 (44%), Positives = 991/1499 (66%), Gaps = 17/1499 (1%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
+E TQ +R++GLSATLPNY +VA FLRV+P GLF+FD+S+RP+PL Q Y+GI+E
Sbjct: 639 IEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAI 698
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
R ++++EI Y+K+++ + +Q +VFVHSRK+T KTA+ + D+ + L +F +
Sbjct: 699 KRFQIMNEIVYEKIMEHAGK-NQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSA 757
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+++ + + +N +L +L +HHAGM R DR L E LF++ ++VLV TATLAW
Sbjct: 758 STEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAW 817
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIF---GRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAHTV+IKGTQ+Y P+ G W +LG LDI GRAGRPQ+D GEGI+ITSH +L
Sbjct: 818 GVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQ 877
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
YYL LL QLPIESQ +S L D LNAE+ LG V N K+A WLGY YL IRM +P YG
Sbjct: 878 YYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYG 937
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I D++ DP L ++ LV AA LDK ++++D+K+GNF TELGRIASH+YI +
Sbjct: 938 ISHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDT 997
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
V+TYN++L+ +++ E+ + S SSEF+NI VR+EE+ EL+ L++ + P+ VK
Sbjct: 998 VQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERV-PIPVKESIEEPS 1056
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
KI++L+Q +IS+ ++ F+L++D Y++ S R+MRA+FE L RGW +++ L CK
Sbjct: 1057 AKINVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCK 1116
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+D+++W PLRQF K LP E+++K+E++ +RL ++ +IG LIR G+ +
Sbjct: 1117 MIDKRMWQSMCPLRQFRK-LPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIH 1175
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYH 597
+Y+ FP ++LS + PITR+ LK+ L ITP+F W + HG+++ +WI+V+D +S+ I H
Sbjct: 1176 KYVHLFPKLELSVHLQPITRSTLKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILH 1235
Query: 598 SELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQA 657
E F L + A+ E ++F VP+FEP PPQY+IR VSD WL E +SF +L LP+
Sbjct: 1236 HEYFLLKAKYAQDE-HLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEK 1294
Query: 658 RTSHTELLDLKPLPVTALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
TELLDL+PLPV+AL N+ +E+LY F FNPIQTQ+F+ +Y++D+NV +GAPTGS
Sbjct: 1295 YPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGS 1354
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GKTI AE A+L + S+ + VYI P++A+ + DW ++ +L K++V +TG+ +
Sbjct: 1355 GKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETST 1414
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
DL L +IIISTPEKWD +SR W R V+ + L ++DE+HL+G E GP+LEVI SRM
Sbjct: 1415 DLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRM 1474
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
RYISSQ ER +R + LS++L+NA D+A WLG FNF P+VRPVPLE+HIQG+
Sbjct: 1475 RYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISH 1534
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
R+ SM KP Y AI HSP KPV++FV SR+QTRLTA+D++ A+D ++FL E
Sbjct: 1535 TQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTE 1594
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
+DL L +++D L++TL G+G H GL+ +R LVE+LF++ IQV+V + +L WG+
Sbjct: 1595 KDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGM 1654
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
N+ AHLVII T+YY+GK YVD+PI D+LQM+G A RP D G+ VI+ KK F+
Sbjct: 1655 NVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFF 1714
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKFLYEP PVES L +HDHFNAEIV+ TI +K+DAV YL+WT+L+RR+ NP YY L+
Sbjct: 1715 KKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQ 1774
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDT-VEPTMLGTIASQYYLSYVTVSMFGS 1194
LS +LS LV+ T DLE S C+ + ++ V P LG IA+ YY++Y T+ +F
Sbjct: 1775 GISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSM 1834
Query: 1195 NIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLL 1254
++ T + + I+S A+EY+ +P+RH+EDN L+Q+V ++N + +DPHVK NLL
Sbjct: 1835 SLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLL 1894
Query: 1255 FQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGL 1314
QAH SR+ L ++ +D + +L ++IR+IQA +D+ +++GWLS ++ M L QMV Q +
Sbjct: 1895 LQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAM 1953
Query: 1315 WFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKE--NLQTVIGNFPVSRLHQDLQ 1372
W +DS L P ++ + +G+ +V ++++ E N + + ++ + +
Sbjct: 1954 W-SKDSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCN 2012
Query: 1373 RFPRIQVKLRLQRRD-IDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGN 1431
R+P I++ + +D I + + +++++ + T A FP+ ++E WW+V+G+
Sbjct: 2013 RYPNIELSYEVVDKDSIRSGGPVVVLVQLER--EEEVTGPVIAPLFPQKREEGWWVVIGD 2070
Query: 1432 TNTSELYALKRISFSDRLNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEALVEQS 1490
++ L ++KR++ + ++ + T L +SD Y+G +QE+ V+++
Sbjct: 2071 AKSNSLISIKRLTLQQKAKVKLDFVAPATGAHNYTLYFMSDAYMGCDQEYKFSVDVKEA 2129
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 252/734 (34%), Positives = 386/734 (52%), Gaps = 23/734 (3%)
Query: 670 LPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLF 729
LPV L F N IQ++++ TD N+LL APTG+GKT A + ML
Sbjct: 462 LPVEKLPKYAQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREI 521
Query: 730 NTQ---------SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780
D K++YIAP++++V+E + + RL + G + E+TGD+ +
Sbjct: 522 GKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGKRLAT-YGITVAELTGDHQLCKEEI 580
Query: 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISS 840
+ II+ TPEKWD I+R R Y + V L+ILDEIHLL +RGP+LE +V+R
Sbjct: 581 SATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIE 640
Query: 841 QTERAVRFIGLSTALANAGDLADWLGVGEI-GLFNFKPSVRPVPLEVHIQGYPGKFYCPR 899
T+ VR IGLS L N D+A +L V GLF F S RPVPLE G K R
Sbjct: 641 MTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKR 700
Query: 900 MNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFL---GMPEE 956
MN+ Y I H+ VL+FV SR++T TA + +T FL E
Sbjct: 701 FQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTE 760
Query: 957 DLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVN 1016
L+ Q + L+ L +G +HHAG+ DR+LVE+LFA+ IQVLV T+TLAWGVN
Sbjct: 761 VLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVN 820
Query: 1017 LPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYK 1076
LPAH VIIKGT+ Y + R+ + DILQM+GRAGRPQYD G+ +++ + +Y
Sbjct: 821 LPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYL 880
Query: 1077 KFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLED 1136
L + P+ES + +L D NAEIV G + + +DAV++L + YL+ R+ +P YG+
Sbjct: 881 SLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISH 940
Query: 1137 TEAEG---LSSYLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVTVSM 1191
+ +G L LV L+ + VK + T + T LG IAS YY++ TV
Sbjct: 941 DDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQT 1000
Query: 1192 FGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKA 1251
+ + P S + S +SE+ + VR E + L +RV V + +++P K
Sbjct: 1001 YNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKES-IEEPSAKI 1059
Query: 1252 NLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVM 1311
N+L QA S+L L + D+ V + R+++A+ +I N GW + ++L +M+
Sbjct: 1060 NVLLQAFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMID 1119
Query: 1312 QGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSR-LHQD 1370
+ +W + L F + +++ + + ++L D+ + +I + + +H+
Sbjct: 1120 KRMW-QSMCPLRQFRKLPEEVVKKIEKKNFP-FERLYDLNHNEIGELIRMPKMGKTIHKY 1177
Query: 1371 LQRFPRIQVKLRLQ 1384
+ FP++++ + LQ
Sbjct: 1178 VHLFPKLELSVHLQ 1191
>sp|P53327|SLH1_YEAST Antiviral helicase SLH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SLH1 PE=1 SV=2
Length = 1967
Score = 1309 bits (3387), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 673/1486 (45%), Positives = 949/1486 (63%), Gaps = 61/1486 (4%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGI-SEPNF 59
VES+Q MIRI+GLSATLPN+++VA FL VN ++G+F+FD S+RP PL QQ +G +
Sbjct: 451 VESSQSMIRIIGLSATLPNFMDVADFLGVNRQIGMFYFDQSFRPKPLEQQLLGCRGKAGS 510
Query: 60 AARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTH 119
E + ++ Y K+ + +++G+Q MVFVHSRK+TVK+A+ + LA ++++F D
Sbjct: 511 RQSKENIDKVAYDKLSEMIQRGYQVMVFVHSRKETVKSARNFIKLAESNHEVDLFAPDP- 569
Query: 120 PQLSLIKKD-----VMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVC 174
I+KD ++K+R+KD+ E+F G+HHAGM RSDR LTE++F +G +KVL C
Sbjct: 570 -----IEKDKYSRSLVKNRDKDMKEIFQFGFGIHHAGMARSDRNLTEKMFKDGAIKVLCC 624
Query: 175 TATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIF----GRAGRPQFDRSGEGIII 230
TATLAWGVNLPA V+IKGTQ+YD K GG+ DLG+ D+ +G GI+
Sbjct: 625 TATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLGISDVIQIFGRGGRPGFGSANGTGILC 684
Query: 231 TSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMK 290
TS+D+L +Y+ L+T Q PIES+F S L DNLNAE++LG+VTNV EA WLGYTY+ +RM+
Sbjct: 685 TSNDRLDHYVSLITQQHPIESRFGSKLVDNLNAEISLGSVTNVDEAIEWLGYTYMFVRMR 744
Query: 291 LNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASH 350
NP YGI W+E+ DP L ++R ++ AAR L +M+ FDE S +F +LGR++S
Sbjct: 745 KNPFTYGIDWEEIANDPQLYERRRKMIVVAARRLHALQMIVFDEVSMHFIAKDLGRVSSD 804
Query: 351 FYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVK 410
FY+ SVE +N+M +++V+ M+S SSEF+ I R+EE EL+ L ++
Sbjct: 805 FYLLNESVEIFNQMCDPRATEADVLSMISMSSEFDGIKFREEESKELKRLSDESVECQIG 864
Query: 411 GGPSNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSL 470
GK ++L+Q YIS+ I +L SD+ Y++ + RI RALF + R W + S
Sbjct: 865 SQLDTPQGKANVLLQAYISQTRIFDSALSSDSNYVAQNSVRICRALFLIGVNRRWGKFSN 924
Query: 471 FMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYT 530
ML CK++++++W HPL QFD LP I+R++ + ++ L E+E ++G L+
Sbjct: 925 VMLNICKSIEKRLWAFDHPLCQFD--LPENIIRRIRDTKPSMEHLLELEADELGELVHNK 982
Query: 531 PGGRLVKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDS 590
G + + L FP I + A + PIT V++I +A+ P+F W HG AQ +W+ V++S
Sbjct: 983 KAGSRLYKILSRFPKINIEAEIFPITTNVMRIHIALGPDFVWDSRIHGDAQFFWVFVEES 1042
Query: 591 ESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFH 650
+ I H E F L +R + ++ F +P+ +P PPQ ++ VSD+W+ E+ + ISF
Sbjct: 1043 DKSQILHFEKFILNRRQLNNQ-HEMDFMIPLSDPLPPQVVVKVVSDTWIGCESTHAISFQ 1101
Query: 651 NLALPQARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLG 710
+L P T T+LL L+PLP +AL N + E++Y F +FNP+QT F+ LY+T+ N +G
Sbjct: 1102 HLIRPFNETLQTKLLKLRPLPTSALQNPLIESIYPFKYFNPMQTMTFYTLYNTNENAFVG 1161
Query: 711 APTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMT 770
+PTGSGKTI AELA+ H F T K+VYIAP+KA+VRER++DW+ ++ G ++VE+T
Sbjct: 1162 SPTGSGKTIVAELAIWHAFKTFPGKKIVYIAPMKALVRERVDDWRKKITPVTGDKVVELT 1221
Query: 771 GDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEV 830
GD PD + A I+I+TPEK+DGISRNW +R +V+ V L+I+DEIHLL ++RGPILE+
Sbjct: 1222 GDSLPDPKDVHDATIVITTPEKFDGISRNWQTRKFVQDVSLIIMDEIHLLASDRGPILEM 1281
Query: 831 IVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQG 890
IVSRM YISSQT++ VR +G+STA++NA D+A WLGV + GL+NF SVRPVPL+++I G
Sbjct: 1282 IVSRMNYISSQTKQPVRLLGMSTAVSNAYDMAGWLGVKDHGLYNFPSSVRPVPLKMYIDG 1341
Query: 891 YPGKF-YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQ 949
+P +CP M +MNKP + AI HSP KP LIFV+SRRQTRLTALDLI ++ PR+
Sbjct: 1342 FPDNLAFCPLMKTMNKPVFMAIKQHSPDKPALIFVASRRQTRLTALDLIHLCGMEDNPRR 1401
Query: 950 FLGMP-EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCT 1008
FL + EE+LQ LSQVTD L+ +LQFGIGLHHAGL KDRS+ +LF NKIQ+L+ T
Sbjct: 1402 FLNIDDEEELQYYLSQVTDDTLKLSLQFGIGLHHAGLVQKDRSISHQLFQKNKIQILIAT 1461
Query: 1009 STLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068
STLAWGVNLPAHLVIIKGT+++D K + Y D +TDILQMMGRAGRP YD G A++
Sbjct: 1462 STLAWGVNLPAHLVIIKGTQFFDAKIEGYRDMDLTDILQMMGRAGRPAYDTTGTAIVYTK 1521
Query: 1069 EPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAIN 1128
E KK FYK FL FPVESSL L DH AEI SG+I +K++A+ +LSWT+LFRR N
Sbjct: 1522 ESKKMFYKHFLNVGFPVESSLHKVLDDHLGAEITSGSITNKQEALDFLSWTFLFRRAHHN 1581
Query: 1129 PAYYGLED-TEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYV 1187
P YYG+ED T G+S +LS L+ +T E+L +S CV + D + T +I+S YY+S++
Sbjct: 1582 PTYYGIEDDTSTAGVSEHLSSLIDSTLENLRESQCVLLHGDDIVATPFLSISSYYYISHL 1641
Query: 1188 TVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLD-- 1245
T+ I + + L LS A EY+ELPVR E NE +SQ+ R++V++ D
Sbjct: 1642 TIRQLLKQIHDHATFQEVLRWLSLAVEYNELPVRGGEIIMNEEMSQQSRYSVESTFTDEF 1701
Query: 1246 -----DPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSS 1300
DPHVK LL QAH SR+DLPI+DY+ D SVLDQS+RI+QA ID+ + G+ +
Sbjct: 1702 ELPMWDPHVKTFLLLQAHLSRVDLPIADYIQDTVSVLDQSLRILQAYIDVASELGYFHTV 1761
Query: 1301 ITCMHLLQMVMQGLWFEQDSA---------------------LWMFPCMNNDLLGTLRAR 1339
+T + ++Q + QG W+E D + M P L TL
Sbjct: 1762 LTMIKMMQCIKQGYWYEDDPVSVLPGLQLRRIKDYTFSEQGFIEMTPQQKKKKLLTLEEI 1821
Query: 1340 GISTVQQLLDIPKE-NLQTVIGNFPVSRLHQDLQRFPRIQ-VKLRLQRRDIDGENSLTLN 1397
G ++LL++ + R QR P ++ +K Q EN+ L
Sbjct: 1822 GRFGYKKLLNVFDQLTFGMTESEDTKKRFVSVCQRLPVLEGMKFEEQ------ENNEVLT 1875
Query: 1398 IRMDKMNSWKNTS-RAFALRFPKIKDEAWWLVLGNTNTSELYALKR 1442
++S N + +FPKI+ E W+L+ EL +KR
Sbjct: 1876 FYSKHLSSKHNNGFEVYCDKFPKIQKELWFLI--GHKGDELLMIKR 1919
Score = 348 bits (894), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 254/867 (29%), Positives = 440/867 (50%), Gaps = 54/867 (6%)
Query: 652 LALPQA-RTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLG 710
+ +P A + S+ L K L ++ L ++ + ++ + N IQ+ ++ + Y T+ N+L+
Sbjct: 251 IIIPAADQASNKNYLYTKLLKISDL-DHFCKTVFPYETLNQIQSLVYPVAYKTNENMLIC 309
Query: 711 APTGSGKTISAELAMLHLFNT----------------QSDMKVVYIAPLKAIVRERMNDW 754
APTG+GKT ++A+L + NT D KV+Y+APLKA+ E ++ +
Sbjct: 310 APTGAGKT---DIALLTIINTIKQFSVVNGENEIDIQYDDFKVIYVAPLKALAAEIVDKF 366
Query: 755 KDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRN-YVKKVGLMI 813
+L + ++ E+TGD +L+ +I++TPEKWD ++R + N V KV L+I
Sbjct: 367 SKKL-APFNIQVRELTGDMQLTKAEILATQVIVTTPEKWDVVTRKANGDNDLVSKVKLLI 425
Query: 814 LDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVG-EIGL 872
+DE+HLL +RG ++E +V+R ++ +R IGLS L N D+AD+LGV +IG+
Sbjct: 426 IDEVHLLHEDRGSVIETLVARTLRQVESSQSMIRIIGLSATLPNFMDVADFLGVNRQIGM 485
Query: 873 FNFKPSVRPVPLEVHIQGYPGKFYCPR-MNSMNKPAYAAICTH-SPTKPVLIFVSSRRQT 930
F F S RP PLE + G GK + +++K AY + V++FV SR++T
Sbjct: 486 FYFDQSFRPKPLEQQLLGCRGKAGSRQSKENIDKVAYDKLSEMIQRGYQVMVFVHSRKET 545
Query: 931 RLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVT--DQNLRQTLQFGIGLHHAGLNDK 988
+A + I+ A S+ F P E + S V D+++++ QFG G+HHAG+
Sbjct: 546 VKSARNFIKLAESNHEVDLFAPDPIEKDKYSRSLVKNRDKDMKEIFQFGFGIHHAGMARS 605
Query: 989 DRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQM 1048
DR+L E++F + I+VL CT+TLAWGVNLPA VIIKGT+ YD K ++D I+D++Q+
Sbjct: 606 DRNLTEKMFKDGAIKVLCCTATLAWGVNLPADCVIIKGTQVYDSKKGGFIDLGISDVIQI 665
Query: 1049 -MGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIF 1107
+G ++ + Y + + P+ES +L D+ NAEI G++
Sbjct: 666 FGRGGRPGFGSANGTGILCTSNDRLDHYVSLITQQHPIESRFGSKLVDNLNAEISLGSVT 725
Query: 1108 HKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEG---LSSYLSRLVQNTFEDLEDSGCVK 1164
+ ++A+ +L +TY+F R+ NP YG++ E L +++ L +
Sbjct: 726 NVDEAIEWLGYTYMFVRMRKNPFTYGIDWEEIANDPQLYERRRKMIVVAARRLHALQMIV 785
Query: 1165 MTEDTVE--PTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRH 1222
E ++ LG ++S +YL +V +F P + L ++S +SE+D + R
Sbjct: 786 FDEVSMHFIAKDLGRVSSDFYLLNESVEIFNQMCDPRATEADVLSMISMSSEFDGIKFRE 845
Query: 1223 NEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIR 1282
E + LS ++LD P KAN+L QA+ S+ + S +D V S+R
Sbjct: 846 EESKELKRLSDESVECQIGSQLDTPQGKANVLLQAYISQTRIFDSALSSDSNYVAQNSVR 905
Query: 1283 IIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGIS 1342
I +A+ I N W S +++ + + + LW D L F N ++ +R S
Sbjct: 906 ICRALFLIGVNRRWGKFSNVMLNICKSIEKRLW-AFDHPLCQFDLPEN-IIRRIRDTKPS 963
Query: 1343 TVQQLLDIPKENLQTVIGNFPV-SRLHQDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMD 1401
++ LL++ + L ++ N SRL++ L RFP+I ++ + N + ++I +
Sbjct: 964 -MEHLLELEADELGELVHNKKAGSRLYKILSRFPKINIEAEIFPI---TTNVMRIHIALG 1019
Query: 1402 KMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSDR-LNTHMELPSGIT 1460
W + A + +W+ + ++ S++ ++ + R LN E+ I
Sbjct: 1020 PDFVWDSRIHGDA--------QFFWVFVEESDKSQILHFEKFILNRRQLNNQHEMDFMIP 1071
Query: 1461 TFQGMK----LVVVSDCYLGFEQEHSI 1483
+ + VVSD ++G E H+I
Sbjct: 1072 LSDPLPPQVVVKVVSDTWIGCESTHAI 1098
>sp|Q9VUV9|U520_DROME Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Drosophila melanogaster GN=CG5931 PE=2 SV=4
Length = 2142
Score = 1291 bits (3341), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 641/1500 (42%), Positives = 980/1500 (65%), Gaps = 25/1500 (1%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
+E+TQ +R+VGLSATLPNY +VA FLRV P+ GLF+FD+SYRP+ L QQYIG++E
Sbjct: 639 IETTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKAL 698
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
R ++++EI Y+K ++ + +Q +VFVHSRK+T KTA+ + D+ + L F +
Sbjct: 699 KRFQVMNEIVYEKTMEHAGR-NQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSA 757
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+ +++ + + +N +L EL +HHAGM R DR L E LF++ ++VLV TATLAW
Sbjct: 758 SMEVLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAW 817
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIF---GRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAHTV+IKGTQ+Y+P+ G W +L LD+ GRAGRPQ+D GEGI+IT+H +L
Sbjct: 818 GVNLPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQ 877
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
+YL LL QLPIESQFIS L D LNAE+ LGTV ++++A WLGYTYL IRM NP YG
Sbjct: 878 FYLSLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYG 937
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
+ D + ADP L + L+ AA L+++ ++++D K+G+F T+LGRIASH+Y+ + +
Sbjct: 938 VSHDAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHET 997
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
+ TYN++L++ +++ E+ + S SSEF +I VR+EE+ EL+ L++ + P+ +K
Sbjct: 998 MLTYNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERV-PIPIKESIEEHS 1056
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
K+++L+Q YIS+ ++ F+L+SD +I+ S AR+MRA+FE L RGW +++ L CK
Sbjct: 1057 AKVNVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCK 1116
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
+DR++W PLRQF K++P EI +KLE++ RL ++E ++G LIR G+ +
Sbjct: 1117 MIDRRMWQSMTPLRQF-KKMPDEIAKKLEKKHFPWGRLYDLEPHELGELIRVPKLGKTIH 1175
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYH 597
+++ FP ++LS + PITR L++ L ITP+F W + HG ++ +W++++D +S+ I H
Sbjct: 1176 KFVHQFPKLELSTHIQPITRGTLRVELTITPDFQWDEKVHGQSEGFWVLIEDVDSELILH 1235
Query: 598 SELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQA 657
E F L ++ ++ E Q L F VP+FEP PPQY++R VSD W+ AE +SF +L LP+
Sbjct: 1236 HEFFLLKQKYSQDEHQ-LKFFVPVFEPLPPQYFLRIVSDRWIGAETQLPVSFRHLILPEK 1294
Query: 658 RTSHTELLDLKPLPVTALGNNIYEALYN--FSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
TELLDL+PLP++AL +E+ Y+ F FNPIQTQ+F+ +Y++D NV +GAPTGS
Sbjct: 1295 NMPPTELLDLQPLPISALRQPKFESFYSQRFPQFNPIQTQVFNAVYNSDENVFVGAPTGS 1354
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775
GK AE A++ LF TQSD + VY+ +A+ DW + S L ++V++TG+
Sbjct: 1355 GKMTIAEFAIMRLFTTQSDARCVYLVSEEALADLVFADWHSKFGS-LDIKVVKLTGETGT 1413
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
DL + ++I+T +KWD +SR W R V+ V L I+DE+ L+G E GP+LE++ SRM
Sbjct: 1414 DLKLIAKGQLVITTADKWDVLSRRWKQRKNVQLVNLFIVDELQLVGGEEGPVLEIVCSRM 1473
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
RYISSQ E+ +R + LS +L +A D+A WLG FNF PSVRP+PLE+HIQGY
Sbjct: 1474 RYISSQIEKQIRIVALSASLTDARDVAQWLGCNPNATFNFHPSVRPIPLELHIQGYNVTH 1533
Query: 896 YCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955
R+ +M+KP Y AI +S KPV++FVSSR+Q RLTA+D++ +AASD P +F E
Sbjct: 1534 NATRIATMSKPVYNAILKYSAHKPVIVFVSSRKQARLTAIDVLTYAASDLQPNRFFHAEE 1593
Query: 956 EDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015
ED++ L ++TD+ L++TL G+ H GL+ D LVE+LF + +QV V + L WG+
Sbjct: 1594 EDIKPFLERMTDKTLKETLAQGVAYLHEGLSASDHRLVEQLFDSGAVQVAVISRDLCWGM 1653
Query: 1016 NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
++ AHLVII T++Y+GK Y D+PITD+LQM+GRA RP D K V++ KK F+
Sbjct: 1654 SISAHLVIIMDTQFYNGKNHSYEDYPITDVLQMIGRANRPNEDADAKCVLMCQSSKKDFF 1713
Query: 1076 KKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
KKF+ EP P+ES L ++HDHFNAE+V+ TI +K+DAV YL+WT+L+RRL NP YY L+
Sbjct: 1714 KKFINEPLPIESHLDHRMHDHFNAEVVTKTIENKQDAVDYLTWTFLYRRLTQNPNYYNLQ 1773
Query: 1136 DTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDT-VEPTMLGTIASQYYLSYVTVSMFGS 1194
LS +LS LV+NT DLE S C+ + +D P LG IA+ YY++Y T+ +F
Sbjct: 1774 GVTHRHLSDHLSELVENTLSDLEQSKCISVEDDMDTLPLNLGMIAAYYYINYTTIELFSL 1833
Query: 1195 NIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRV--RFAVDNN---RLDDPHV 1249
++ T + L I+S A+EY+++ VRH+E+ LSQR+ + N + +DPH+
Sbjct: 1834 SLNSKTKVRGLLEIISSAAEYEDVVVRHHEEQVLRTLSQRLPNKLTGPNETAPKFNDPHI 1893
Query: 1250 KANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQM 1309
K NLL QAH SRL L + D + +L ++IR+IQA +D+ +++GWLS ++ M L QM
Sbjct: 1894 KTNLLLQAHLSRLQLG-PELQGDTEQILSKAIRLIQACVDVLSSNGWLSPAVAAMELAQM 1952
Query: 1310 VMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRL 1367
V Q +W +DS L P + +++ + I TV ++++ E+ + + + ++ +
Sbjct: 1953 VTQAMW-SKDSYLKQLPHFSPEIVKRCTEKKIETVFDIMELEDEDRTRLLQLSDLQMADV 2011
Query: 1368 HQDLQRFPRIQVKLRLQRRD-IDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWW 1426
+ R+P I++ + +D I+ +++ + +++++ + + T A FP+ ++E WW
Sbjct: 2012 ARFCNRYPNIELNYEVVDKDRINSGSTVNVVVQLERED--EVTGPVIAPFFPQKREEGWW 2069
Query: 1427 LVLGNTNTSELYALKRISFSDRLNTHMELPSGITTFQGMKLVVVSDCYLGFEQEH--SIE 1484
+V+G+ T+ L ++KR++ + ++ + L +SD YLG +QE+ SIE
Sbjct: 2070 VVIGDPKTNSLLSIKRLTLQQKAKVKLDFVAPSPGKHDYTLYYMSDSYLGCDQEYKFSIE 2129
Score = 399 bits (1025), Expect = e-110, Method: Compositional matrix adjust.
Identities = 249/734 (33%), Positives = 395/734 (53%), Gaps = 25/734 (3%)
Query: 671 PVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAML---- 726
PV L + F N IQ++++ +D N+LL APTG+GKT A L M+
Sbjct: 463 PVDKLPKYVQPVFEGFKTLNRIQSRLYKAALDSDENMLLCAPTGAGKTNVALLTMMREIG 522
Query: 727 -HL-----FNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780
H+ N Q D K++Y+AP+K++V+E + ++ RL + E+TGD+ +
Sbjct: 523 KHINEDGTINAQ-DFKIIYVAPMKSLVQEMVGNFGRRLAC-YNLTVSELTGDHQLTREQI 580
Query: 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISS 840
+ +I+ TPEKWD I+R R +V V L+I+DEIHLL ERGP+LE +V+R
Sbjct: 581 AATQVIVCTPEKWDIITRKGGERTFVSLVRLVIIDEIHLLHDERGPVLEALVARTIRNIE 640
Query: 841 QTERAVRFIGLSTALANAGDLADWLGVG-EIGLFNFKPSVRPVPLEVHIQGYPGKFYCPR 899
T+ VR +GLS L N D+A +L V + GLF F S RPV LE G K R
Sbjct: 641 TTQEEVRLVGLSATLPNYQDVATFLRVKPDKGLFYFDNSYRPVSLEQQYIGVTEKKALKR 700
Query: 900 MNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQ 959
MN+ Y H+ VL+FV SR++T TA + +T FL ++
Sbjct: 701 FQVMNEIVYEKTMEHAGRNQVLVFVHSRKETGKTARAVRDMCLEQDTLGSFLKEGSASME 760
Query: 960 MVLS---QVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVN 1016
++ + QV + L++ L +G +HHAG+ DR+LVE+LFA+ IQVLV T+TLAWGVN
Sbjct: 761 VLRTEAEQVKNTELKELLPYGFAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVN 820
Query: 1017 LPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYK 1076
LPAH VIIKGT+ Y+ + R+V+ D+LQM+GRAGRPQYD G+ +++ + + FY
Sbjct: 821 LPAHTVIIKGTQVYNPEKGRWVELSALDVLQMLGRAGRPQYDTKGEGILITNHSELQFYL 880
Query: 1077 KFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLED 1136
L + P+ES +L D NAEIV GT+ H +DAV++L +TYL+ R+ NP YG+
Sbjct: 881 SLLNQQLPIESQFISKLPDMLNAEIVLGTVQHLQDAVNWLGYTYLYIRMLRNPTLYGVSH 940
Query: 1137 TEAEG---LSSYLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVTVSM 1191
+ L + + L+ LE SG +K T + T LG IAS YYL++ T+
Sbjct: 941 DAIKADPLLEQHRADLLHTAACCLERSGLIKYDRKTGHFQVTDLGRIASHYYLTHETMLT 1000
Query: 1192 FGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKA 1251
+ + S + S +SE+ + VR E + L +RV + + +++ K
Sbjct: 1001 YNQLLKQTLSEIELFRVFSLSSEFRHISVREEEKLELQKLMERVPIPIKES-IEEHSAKV 1059
Query: 1252 NLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVM 1311
N+L QA+ S+L L ++D+ + + R+++A+ +I GW + + L +M+
Sbjct: 1060 NVLLQAYISQLKLEGFALMSDMVFITQSAARLMRAIFEIVLTRGWAQLADKTLTLCKMID 1119
Query: 1312 QGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSR-LHQD 1370
+ +W + + L F M +++ L + +L D+ L +I + + +H+
Sbjct: 1120 RRMW-QSMTPLRQFKKMPDEIAKKLEKKHFPW-GRLYDLEPHELGELIRVPKLGKTIHKF 1177
Query: 1371 LQRFPRIQVKLRLQ 1384
+ +FP++++ +Q
Sbjct: 1178 VHQFPKLELSTHIQ 1191
>sp|Q9U2G0|U520_CAEEL Putative U5 small nuclear ribonucleoprotein 200 kDa helicase
OS=Caenorhabditis elegans GN=Y46G5A.4 PE=3 SV=1
Length = 2145
Score = 1199 bits (3101), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 611/1506 (40%), Positives = 932/1506 (61%), Gaps = 25/1506 (1%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
+E R+VGLSATLPNY +VA FLRV PE L FFD+SYRP+PL QQYIG++E
Sbjct: 633 MEQNHDECRLVGLSATLPNYQDVATFLRVKPEH-LHFFDNSYRPVPLEQQYIGVTEKKAL 691
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
R + ++E+ Y K+++ + Q +VFVHSRK+T KTA+ + D + L F +
Sbjct: 692 KRFQAMNEVVYDKIMEHAGKS-QVLVFVHSRKETAKTAKAIRDACLEKDTLSAFMREGSA 750
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
+++ + +++N DL +L +HHAGM R DR L E LF++ ++VL TATLAW
Sbjct: 751 STEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVLFSTATLAW 810
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIIITSHDKLA 237
GVNLPAHTV+IKGTQ+Y+P+ G W +LG LDI GRAGRPQ+D GEGI+IT+H +L
Sbjct: 811 GVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGILITNHSELQ 870
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
YYL L+ QLP+ESQ +S L D LNAEV LGTV++V EA WLGYT+L +RM NP YG
Sbjct: 871 YYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRMLKNPTLYG 930
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSS 357
I ++ ADP L ++ L+ A LDKA ++++D++SG TELGRIASHFY Y S
Sbjct: 931 ITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIASHFYCTYES 990
Query: 358 VETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKH 417
++TYN++L +D ++ + S SSEF+ + VRDEE+ EL+ + + P+ +K
Sbjct: 991 MQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEH-APIPIKENLDEAS 1049
Query: 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477
K ++L+Q YIS+ ++ F+L +D +++ S R+ RALFE L RGW ++ +L CK
Sbjct: 1050 AKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCK 1109
Query: 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVK 537
V ++ W +PL QF K++P+E++R ++++ DRL ++++ +G LI+ G+ +
Sbjct: 1110 MVTQRQWGSLNPLHQF-KKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIKMPKMGKPLF 1168
Query: 538 QYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYH 597
+++ FP ++++ + PITRT ++I L ITP+F W + HG+A+ +WI ++D++ + I H
Sbjct: 1169 KFIRQFPKLEMTTLIQPITRTTMRIELTITPDFKWDEKVHGSAEGFWIFIEDTDGEKILH 1228
Query: 598 SELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQA 657
E F L ++ E + VP+F+P PP YY+R VSD W+ AE ISF +L LP+
Sbjct: 1229 HEFFLLKQKFCSDE-HVVKMIVPMFDPMPPLYYVRIVSDRWIGAETVLPISFRHLILPEK 1287
Query: 658 RTSHTELLDLKPLPVTALGNNIYEALY---NFSHFNPIQTQIFHILYHTDNNVLLGAPTG 714
TELLDL+PLP++A+ N ++ ++ F FNPIQTQ+F ++ ++ NV++ AP G
Sbjct: 1288 YPPPTELLDLQPLPISAVTNKEFQTVFAESGFKVFNPIQTQVFRTVFESNENVIVCAPNG 1347
Query: 715 SGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYT 774
SGKT AELA+L F + K VYI P++ + + DWK RL +G +V +TG+ T
Sbjct: 1348 SGKTAIAELAVLRHFENTPEAKAVYITPMEDMATKVYADWKRRLEPAIGHTIVLLTGEQT 1407
Query: 775 PDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSR 834
DL +IISTPE+WD ISR W R V+ V L I D++H++GA G + EV+ SR
Sbjct: 1408 MDLKLAQRGQLIISTPERWDNISRRWKQRKSVQNVKLFIADDLHMIGASNGAVFEVVCSR 1467
Query: 835 MRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGK 894
RYISSQ E AVR + LS++L NA DL WLG FNF PS RPVPL++ I+ +
Sbjct: 1468 TRYISSQLESAVRVVALSSSLTNARDLGMWLGCSASATFNFMPSTRPVPLDLEIKSFNLS 1527
Query: 895 FYCPRMNSMNKPAYAAICTHS---PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFL 951
R +M +P Y AIC H+ KP L+FV RRQTR A+ L+ A +D P++FL
Sbjct: 1528 HNASRFAAMERPVYQAICRHAGKLEPKPALVFVPVRRQTRPVAVALLTMALADGAPKRFL 1587
Query: 952 GMPEED--LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTS 1009
+ E D Q +L+ + D++LR+++ G+G H G KD +V++LF +N IQV V
Sbjct: 1588 RLAEHDDTFQALLADIEDESLRESVSCGVGFLHEGTAPKDVHIVQQLFESNAIQVCVVPR 1647
Query: 1010 TLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069
+ + + + A+LV++ T++Y+GK Y D+PI D+L M+G A RP D K V++
Sbjct: 1648 GMCYQIEMSAYLVVVMDTQFYNGKYHVYEDYPIADMLHMVGLANRPILDSDAKCVVMCQT 1707
Query: 1070 PKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINP 1129
K+++YKKFL +P PVES L LHDHFNAEIV+ TI +K+DA+ YL+WT L+RR+ NP
Sbjct: 1708 SKRAYYKKFLCDPLPVESHLDHCLHDHFNAEIVTKTIENKQDAIDYLTWTLLYRRMTQNP 1767
Query: 1130 AYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTE--DTVEPTMLGTIASQYYLSYV 1187
YY L+ T LS LS LV+ T +DLE+S C+ + + DTV LG IAS YY+SY
Sbjct: 1768 NYYNLQGTTHRHLSDALSELVELTLKDLENSKCIAVKDEMDTVSLN-LGMIASYYYISYQ 1826
Query: 1188 TVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDP 1247
T+ +F ++ T + I+S +SE+ +P+RH ED L++R+ + N + DP
Sbjct: 1827 TIELFSMSLKEKTKTRALIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDP 1886
Query: 1248 HVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLL 1307
HVK NLL AH SR+ L ++ D + ++ ++ R++QA +D+ +++GWLS +I M L
Sbjct: 1887 HVKVNLLIHAHLSRVKL-TAELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELS 1945
Query: 1308 QMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIG--NFPVS 1365
QM+ Q + + + L P + LL +A+ +++V +LL++ ++ ++ ++
Sbjct: 1946 QMLTQAM-YSNEPYLKQLPHCSAALLERAKAKEVTSVFELLELENDDRSDILQMEGAELA 2004
Query: 1366 RLHQDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTS-RAFALRFP-KIKDE 1423
+ + +P I+V L+ + ++L L + +++ N + A FP K K+E
Sbjct: 2005 DVARFCNHYPSIEVATELENDVVTSNDNLMLAVSLERDNDIDGLAPPVVAPLFPQKRKEE 2064
Query: 1424 AWWLVLGNTNTSELYALKRISFSDRLNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSI 1483
WWLV+G++ ++ L +KR+ +++ + ++ + KL +SD YLG +QE +
Sbjct: 2065 GWWLVIGDSESNALLTIKRLVINEKSSVQLDFAAPRPGHHKFKLFFISDSYLGADQEFDV 2124
Query: 1484 EALVEQ 1489
VE+
Sbjct: 2125 AFKVEE 2130
Score = 375 bits (962), Expect = e-102, Method: Compositional matrix adjust.
Identities = 267/851 (31%), Positives = 425/851 (49%), Gaps = 61/851 (7%)
Query: 667 LKPLP---------VTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717
LKP P V+ L A + N IQ+++ + ++LL APTG+GK
Sbjct: 444 LKPRPFAEGEKLVSVSELPKWAQPAFDGYKSLNRIQSRLCDSALRSKEHLLLCAPTGAGK 503
Query: 718 TISAELAML-----HLFNTQS----DMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE 768
T A L ML HL S + K+VYIAP+K++V+E + + RL + G + E
Sbjct: 504 TNVALLTMLQEIGNHLAEDGSVKLDEFKIVYIAPMKSLVQEMVGSFSKRL-APFGITVGE 562
Query: 769 MTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPIL 828
MTGD ++ +I+ TPEK+D ++R R Y + V L+I+DEIHLL +RGP+L
Sbjct: 563 MTGDAQMSKEQFMATQVIVCTPEKYDVVTRKGGERAYNQMVRLLIIDEIHLLHDDRGPVL 622
Query: 829 EVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHI 888
E IV R Q R +GLS L N D+A +L V L F S RPVPLE
Sbjct: 623 ESIVVRTIRQMEQNHDECRLVGLSATLPNYQDVATFLRVKPEHLHFFDNSYRPVPLEQQY 682
Query: 889 QGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPR 948
G K R +MN+ Y I H+ VL+FV SR++T TA + +T
Sbjct: 683 IGVTEKKALKRFQAMNEVVYDKIMEHAGKSQVLVFVHSRKETAKTAKAIRDACLEKDTLS 742
Query: 949 QFL---GMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVL 1005
F+ E L+ Q + +L+ L +G +HHAG+N DR+LVE+LFA+ IQVL
Sbjct: 743 AFMREGSASTEILRTEAEQAKNLDLKDLLPYGFAIHHAGMNRVDRTLVEDLFADRHIQVL 802
Query: 1006 VCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065
T+TLAWGVNLPAH VIIKGT+ Y+ + R+ + DI+QM+GRAGRPQYD G+ ++
Sbjct: 803 FSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGRAGRPQYDDRGEGIL 862
Query: 1066 LVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRL 1125
+ + + +Y + + PVES + +L D NAE+V GT+ +A ++L +T+LF R+
Sbjct: 863 ITNHSELQYYLSLMNQQLPVESQMVSRLTDMLNAEVVLGTVSSVSEATNWLGYTFLFVRM 922
Query: 1126 AINPAYYGLEDTEAEG---LSSYLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIAS 1180
NP YG+ +A L + L+ L+ +G +K + + ++ T LG IAS
Sbjct: 923 LKNPTLYGITHEQARADPLLEQRRADLIHTACVLLDKAGLIKYDKRSGIIQATELGRIAS 982
Query: 1181 QYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVD 1240
+Y +Y ++ + + S I S +SE+ L VR E + +++ +
Sbjct: 983 HFYCTYESMQTYNKLLVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPIPIK 1042
Query: 1241 NNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSS 1300
N LD+ K N+L QA+ S+L L D+ V + R+ +A+ +I GW +
Sbjct: 1043 EN-LDEASAKTNVLLQAYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLA 1101
Query: 1301 ITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIG 1360
+ L +MV Q W + L F + ++++ ++ + S +L D+ + L +I
Sbjct: 1102 QKVLTLCKMVTQRQWGSLN-PLHQFKKIPSEVVRSIDKKNYS-FDRLYDLDQHQLGDLIK 1159
Query: 1361 NFPVSR-LHQDLQRFPRIQVKLRLQ---RRDIDGENSLTLNIRMDKMNSWKNTSRAFALR 1416
+ + L + +++FP++++ +Q R + E ++T + + W A
Sbjct: 1160 MPKMGKPLFKFIRQFPKLEMTTLIQPITRTTMRIELTITPDFK------WDEKVHGSA-- 1211
Query: 1417 FPKIKDEAWWLVLGNTNTS-----ELYALKRISFSDRLNTHMELPSGITTFQGMK----L 1467
E +W+ + +T+ E + LK+ SD M +P F M +
Sbjct: 1212 ------EGFWIFIEDTDGEKILHHEFFLLKQKFCSDEHVVKMIVP----MFDPMPPLYYV 1261
Query: 1468 VVVSDCYLGFE 1478
+VSD ++G E
Sbjct: 1262 RIVSDRWIGAE 1272
>sp|Q55CI8|HELCL_DICDI Activating signal cointegrator 1 complex subunit 3-like
OS=Dictyostelium discoideum GN=ascc3l PE=3 SV=1
Length = 2237
Score = 1168 bits (3021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 623/1522 (40%), Positives = 928/1522 (60%), Gaps = 58/1522 (3%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
+ESTQ+M+R+VGLSATLPNY +VA FLRV P+ G+F+FDSSYRPIPL QQYIGIS+
Sbjct: 711 IESTQQMVRLVGLSATLPNYEDVATFLRVEPD-GVFYFDSSYRPIPLEQQYIGISDRGIK 769
Query: 61 ARNELLSEICYKKVVDSLRQG-HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTH 119
+ + ++I + KV S R G HQ ++FVHSR++T KT + L D A + ++ + D
Sbjct: 770 -QLQRCNDITFTKV--SERVGDHQILIFVHSRRETAKTGKDLRDRAVEDQSIDRYIRDPA 826
Query: 120 PQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLA 179
+ L + +N +L +L +G+HHAG+ RSDR L E LF + ++VL+ TATLA
Sbjct: 827 SREILRATASKQIQNAELKDLLPYGIGIHHAGLSRSDRSLVEDLFGDNRIQVLISTATLA 886
Query: 180 WGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIIITSHDKL 236
WGVNLPAHTV+IKGTQ+Y+P+ G W +L LD+ GRAGRP FD+ GEGIIITS +L
Sbjct: 887 WGVNLPAHTVIIKGTQIYNPEKG-WCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQHEL 945
Query: 237 AYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAY 296
+YL LL +QL IESQFIS + DNLNAE+ LG++ V++A WLGYTYL I M NP Y
Sbjct: 946 QFYLSLLNTQLSIESQFISRIADNLNAEIVLGSIQTVRDAVNWLGYTYLYICMIRNPPLY 1005
Query: 297 GIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYS 356
I +D+ DP L ++ LV AA L+K ++++D KSG TELG++ASH+YI S
Sbjct: 1006 EISYDDFEKDPLLEQRRLDLVHSAATILEKNSLIKYDRKSGKLQSTELGKVASHYYITNS 1065
Query: 357 SVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNK 416
S+ Y E L+ M+D E++ + S SSEF+N+VVR+ E+ ELE L++ + P+ +K
Sbjct: 1066 SMSIYQEHLKPSMSDIELLRVFSLSSEFKNVVVREGEKFELEKLLERV-PIPIKENIEEP 1124
Query: 417 HGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYC 476
KI++L+Q YIS +D F+LV D YI+ S +RI RALFE L++GW +++ +L
Sbjct: 1125 SSKINVLLQTYISNLKLDGFALVVDMFYIAQSASRITRALFEIVLKKGWAQLAKKILNLA 1184
Query: 477 KAVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLV 536
K +D ++W Q PLRQF K P ++L +LE RG ++ L E + +G I+ G+ +
Sbjct: 1185 KMIDSKMWSSQSPLRQFHKISP-KVLNQLERRGIPIEDLYEYNSQQLGNAIQNPSEGKQL 1243
Query: 537 KQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIY 596
+ FP + L+A V PI +L++ L+ITP+F + + +H + WWIIV+D + + I
Sbjct: 1244 FDLIHNFPKLDLTAHVQPILHGLLRVELSITPDFQYDERYHNNSIGWWIIVEDVDGERIL 1303
Query: 597 HSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQ 656
+ E F+L K+M GE Q +SFTVP+ +P PPQYY+R +SD W+ AE ISF +L LP+
Sbjct: 1304 YFEYFSLKKKMVNGEDQLVSFTVPLSQPLPPQYYVRVISDHWIGAEYSLPISFQHLILPE 1363
Query: 657 ARTSHTELLDLKPLPVTALGNNIYEALYN--FSHFNPIQTQIFHILYHTDNNVLLGAPTG 714
LLDL+PLP+ L + E+++ FS FN IQTQ+F+ +Y +++N + APT
Sbjct: 1364 KYPPCRPLLDLQPLPIQVLKDPKAESIFKPTFSIFNAIQTQVFNCMYQSNDNAFISAPTN 1423
Query: 715 SGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR--LVSQLGKEMVEMTGD 772
SGKT+ AE+A++ F KVVY+AP++ + R+ DW ++ + S G + ++TGD
Sbjct: 1424 SGKTVCAEIALIRCFKQNPKAKVVYLAPMQDLASVRLKDWSNKFGVKSPFGLVVSDLTGD 1483
Query: 773 YTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIV 832
D L ++II++ EKWD +SR W R ++ + L+I+DE+HL+G E GP +E++V
Sbjct: 1484 AVTDNKILDRSNIIVTNCEKWDILSRKWKQRKALQSINLLIVDELHLIGGEYGPTMEIVV 1543
Query: 833 SRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYP 892
SRMRYIS+QT A+R I LS+++ANA DL W+G +NF P+VRP+P+E IQG+
Sbjct: 1544 SRMRYISTQTGNALRVIALSSSIANARDLVLWIGATPQTCYNFHPNVRPIPVEYQIQGFE 1603
Query: 893 GKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAAS--DETPRQF 950
+ RM +M KP + + + + +FV +R+ +R A D+I +S D + +
Sbjct: 1604 FPHFNARMLAMTKPTVYEVAKNKNQQSI-VFVPTRKLSRSLAADIIANVSSFEDTLTKPY 1662
Query: 951 LGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTST 1010
L E L L V L+Q+LQ G+ +H GL +++R +VE LF + I+VL+ T +
Sbjct: 1663 LVCEEHVLTPYLEDVDSFALKQSLQMGVAFYHDGLTERERRVVEILFRSGSIRVLIATHS 1722
Query: 1011 LAWGV-NLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQ-----YDQHGKAV 1064
+AW + N+ A LV+I GT+ Y GK RY+D+PI DILQM+GRAG+ + ++ K +
Sbjct: 1723 VAWLLDNVFAQLVVIMGTQLYQGKDIRYIDYPINDILQMIGRAGKQEGGGVISNKVAKVL 1782
Query: 1065 ILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRR 1124
+L H PKK +YK FL EP PVES L LHD FN+EIV+ TI K+DA+ YL+WT+L+RR
Sbjct: 1783 LLCHAPKKEYYKMFLNEPLPVESHLDHCLHDQFNSEIVTKTITKKQDALDYLTWTFLYRR 1842
Query: 1125 LAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMT--EDTVEPTMLGTIASQY 1182
L NP YY L LS +LS LV+NT +LE S C+ + +D V P LG IAS Y
Sbjct: 1843 LNQNPNYYNLSGVSHLHLSEHLSELVENTLVELEQSNCITIQDDQDKVSPLNLGIIASYY 1902
Query: 1183 YLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNN 1242
YL Y T+ +FGS++ T + I+S A E++ LP+RH ED L+ + +D
Sbjct: 1903 YLKYQTIELFGSSLKSTTRRRGIMDIISNAPEFNSLPIRHREDQILMKLASHLPQKIDKP 1962
Query: 1243 RLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSIT 1302
+ K N+L Q HFSR + +D D K +L+ + R++QA++D+ +++ WL +I
Sbjct: 1963 NYQEISTKVNVLLQCHFSRESIS-ADLYQDQKFILENATRLLQAIVDVISSNSWLQPAIA 2021
Query: 1303 CMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTV-----------QQLLDIP 1351
M L QM+ Q +W + DS P MN + + ++GI +V QLLD+
Sbjct: 2022 AMELSQMITQAMW-DSDSVFKQLPHMNKRRIDAITSQGIESVFDLMSLDDNSRIQLLDLS 2080
Query: 1352 KENLQTVIGNFPVSRLHQDLQRFPRIQVKLRLQRRD---IDGENSLTLNIRMDKMNSWKN 1408
++ ++ +F ++P I + ++Q D D ++ + I D + +N
Sbjct: 2081 QQESNDLVQSF---------MKYPDIDISYQVQDEDDLHADSIMTVEMVIERDLGDDEEN 2131
Query: 1409 -------TSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSDRLNTHMELPSGITT 1461
+ A +PK K WW ++G++ + L A+KRI+F + E P+
Sbjct: 2132 PIEINDSINVVSAPYYPKEKICGWWALIGDSKNNHLLAIKRITFLKKTKVKFEFPTPAVG 2191
Query: 1462 FQGMKLVVVSDCYLGFEQEHSI 1483
+ L + SD Y G +QEH +
Sbjct: 2192 KHQLSLYLFSDSYNGCDQEHEL 2213
Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust.
Identities = 254/715 (35%), Positives = 390/715 (54%), Gaps = 25/715 (3%)
Query: 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSD----------MKVV 738
N +Q+++F + TDNN+LL APT SGKT A L +LH D K+V
Sbjct: 552 LNRVQSKLFDCAFKTDNNLLLSAPTSSGKTNVAMLTILHEIGKNRDRDSGKIRLDAFKIV 611
Query: 739 YIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISR 798
YIAP+K++V+E + ++ RL S G + E+TGD + + II++TPEKWD I+R
Sbjct: 612 YIAPMKSLVQEMVGNFSKRLKS-YGIVVNELTGDQSLTNKQISETQIIVTTPEKWDIITR 670
Query: 799 NWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA 858
R Y + V L+I+DEIHLL ERGP+LE IV+R + T++ VR +GLS L N
Sbjct: 671 KSGDRAYTQLVKLIIIDEIHLLHDERGPVLECIVARTLRMIESTQQMVRLVGLSATLPNY 730
Query: 859 GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTK 918
D+A +L V G+F F S RP+PLE G + ++ N + +
Sbjct: 731 EDVATFLRVEPDGVFYFDSSYRPIPLEQQYIGISDRG-IKQLQRCNDITFTKVSERVGDH 789
Query: 919 PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP--EEDLQMVLS-QVTDQNLRQTLQ 975
+LIFV SRR+T T DL A D++ +++ P E L+ S Q+ + L+ L
Sbjct: 790 QILIFVHSRRETAKTGKDLRDRAVEDQSIDRYIRDPASREILRATASKQIQNAELKDLLP 849
Query: 976 FGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTK 1035
+GIG+HHAGL+ DRSLVE+LF +N+IQVL+ T+TLAWGVNLPAH VIIKGT+ Y+ + K
Sbjct: 850 YGIGIHHAGLSRSDRSLVEDLFGDNRIQVLISTATLAWGVNLPAHTVIIKGTQIYNPE-K 908
Query: 1036 RYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHD 1095
+ + D+ QM+GRAGRP +D+ G+ +I+ + + FY L +ES ++ D
Sbjct: 909 GWCELSPLDVTQMLGRAGRPPFDKEGEGIIITSQHELQFYLSLLNTQLSIESQFISRIAD 968
Query: 1096 HFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGL--EDTEAEG-LSSYLSRLVQN 1152
+ NAEIV G+I DAV++L +TYL+ + NP Y + +D E + L LV +
Sbjct: 969 NLNAEIVLGSIQTVRDAVNWLGYTYLYICMIRNPPLYEISYDDFEKDPLLEQRRLDLVHS 1028
Query: 1153 TFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILS 1210
LE + +K + ++ T LG +AS YY++ ++S++ ++ P S L + S
Sbjct: 1029 AATILEKNSLIKYDRKSGKLQSTELGKVASHYYITNSSMSIYQEHLKPSMSDIELLRVFS 1088
Query: 1211 GASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYV 1270
+SE+ + VR E E L +RV + N +++P K N+L Q + S L L V
Sbjct: 1089 LSSEFKNVVVREGEKFELEKLLERVPIPIKEN-IEEPSSKINVLLQTYISNLKLDGFALV 1147
Query: 1271 TDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNN 1330
D+ + + RI +A+ +I GW + ++L +M+ +W Q S L F ++
Sbjct: 1148 VDMFYIAQSASRITRALFEIVLKKGWAQLAKKILNLAKMIDSKMWSSQ-SPLRQFHKISP 1206
Query: 1331 DLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDL-QRFPRIQVKLRLQ 1384
+L L RGI ++ L + + L I N + DL FP++ + +Q
Sbjct: 1207 KVLNQLERRGIP-IEDLYEYNSQQLGNAIQNPSEGKQLFDLIHNFPKLDLTAHVQ 1260
>sp|Q9UT24|BRR2_SCHPO Pre-mRNA-splicing factor brr2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=brr2 PE=1 SV=1
Length = 2176
Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 576/1501 (38%), Positives = 902/1501 (60%), Gaps = 30/1501 (1%)
Query: 2 ESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAA 61
E T +R+VGLSATLPNY +VA FL V+P+ GLF+FDS+YRP PL Q++IGI+E
Sbjct: 679 EETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPLKQEFIGITEKTPFK 738
Query: 62 RNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQ 121
R + +E CY+KV+ + +Q ++FVHSRK+T KTA+ + D A E +
Sbjct: 739 RMQTTNEACYEKVMQHAGK-NQVLIFVHSRKETAKTARFIRDKALEEETIGHLLRSDAAS 797
Query: 122 LSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWG 181
+++ + + +++L +L +HHAGM R DR +E LF++G ++VLV TATLAWG
Sbjct: 798 REILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTATLAWG 857
Query: 182 VNLPAHTVVIKGTQLYDPKAGGWRDLG---MLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238
VNLPAHTV+IKGTQ+Y P+ G W +L +L + GRAGRPQFD GEGIIIT+H +L Y
Sbjct: 858 VNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAHSELQY 917
Query: 239 YLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGI 298
YL L+ QLPIESQF+ L D LNAEV+LGTV ++++ WLGYTYL +RM +P Y +
Sbjct: 918 YLSLMNQQLPIESQFMRRLADCLNAEVSLGTVRSIEDGVDWLGYTYLYVRMLRSPALYSV 977
Query: 299 GWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSV 358
G E D L K+ L+ AA L+K K++ ++ +SG TELG++A+ +Y+ ++S+
Sbjct: 978 G-PEYDDDKYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLTATELGKVAASYYVTHNSM 1036
Query: 359 ETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKHG 418
YN +L + + E+ + S S EF++I VR+EE+ EL L++ + P+ ++
Sbjct: 1037 AIYNRLLMQTTSFIELFRVFSFSDEFKHIPVREEEKVELAKLLERV-PIPIRERLDEPAA 1095
Query: 419 KISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKA 478
KI+ L+Q YISR +D F+LV+D Y++ S RIMRA+FE LRRGW ++ L+ CK
Sbjct: 1096 KINALLQSYISRQRLDGFALVADMVYVTQSAGRIMRAIFEISLRRGWSSVATLSLDTCKM 1155
Query: 479 VDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVKQ 538
+++++WP PLRQF P+E++R++E++ R +++ ++G L+ GR V
Sbjct: 1156 IEKRLWPTMSPLRQF-PNCPSEVIRRVEKKEFPWQRYFDLDPAELGELVGVPKEGRRVYN 1214
Query: 539 YLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYHS 598
+ FP + + A V PITR+++++ L I +F W DH G ++ +WI+V+D + D + H
Sbjct: 1215 MVQSFPRLSVEAHVQPITRSLVRVELVINSQFNWDDHLSGTSEAFWILVEDVDGDRLLHY 1274
Query: 599 ELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQAR 658
E F L K+ E ++FTVP+ EP PP Y+I+ VSD WLH+ +SF L +P+
Sbjct: 1275 EQFFLLKKYKDDE-HIVNFTVPLLEPLPPCYFIKIVSDRWLHSITKVPLSFQRLIMPEKF 1333
Query: 659 TSHTELLDLKPLPVTALGNNIYEALY-NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717
+ T LLDL+ PV++L N + +LY NF FN IQTQ+F+ +Y T+++V +GAP GSGK
Sbjct: 1334 PAPTPLLDLQNAPVSSLNNPSFISLYPNFKFFNKIQTQVFNSVYKTNDSVFIGAPNGSGK 1393
Query: 718 TISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG--KEMVEMTGDYTP 775
T+ AELA+LH ++ + VYIAP++ IV R +W + S LG K +V++TG+ +
Sbjct: 1394 TVCAELALLHHWSQEDYGTAVYIAPIQEIVDRRYEEWYGKF-SDLGDGKVLVKLTGERSQ 1452
Query: 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRM 835
DL + AD+I TP +WD +S+ W S ++KV I DE+ LLG GP+ E+++SR+
Sbjct: 1453 DLKLIQVADLIFCTPSQWDSLSKRWRSMRSIQKVDFYICDELQLLGGFYGPLYEIVISRI 1512
Query: 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF 895
RY++ Q E+ +R +GLS ++ANA DL +WLG +FNF P RP PL +H+Q +
Sbjct: 1513 RYMAVQLEKNIRVVGLSVSVANARDLGEWLGTSPQCIFNFSPKDRPNPLTIHLQSFSITH 1572
Query: 896 YCPRMNSMNKPAYAAICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP 954
+ M +M+KP Y ++ S K ++F R+ + A DL+ F+ +DE F M
Sbjct: 1573 FPSLMLAMSKPIYRSLKNFISQRKSTIVFTPDRKVAKQLAFDLVTFSMADEDEYLFSLME 1632
Query: 955 EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWG 1014
E ++V D L+Q+L+ GI + D+++V+ L+ + I+VL+ + + +
Sbjct: 1633 NE----AFNKVEDAALQQSLKHGIAYISEITSSNDQNIVQYLYRHGLIKVLIASRDVIYS 1688
Query: 1015 VNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF 1074
+ ++ VI+ GT+YYDGK RY+D+PI+++LQM+G + + +++ KK +
Sbjct: 1689 LKAKSNAVIVMGTQYYDGKEHRYIDYPISELLQMLGFTASIGSSELSQVILMTVTTKKEY 1748
Query: 1075 YKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGL 1134
YKKFL EP P+ES L+ LHD F +EI + TI K+DAV +L+W+Y++RRL NPAYYGL
Sbjct: 1749 YKKFLNEPLPMESHLQVWLHDAFVSEISTQTIESKQDAVDWLTWSYMYRRLVANPAYYGL 1808
Query: 1135 EDTEAEGLSSYLSRLVQNTFEDLEDSGCVKM--TEDTVEPTMLGTIASQYYLSYVTVSMF 1192
+D E +S +LS LV+ T DL ++ + + +D+ L IAS Y ++Y+T+ F
Sbjct: 1809 QDITHESVSEFLSDLVETTMNDLSEARLITVDDEDDSCVALNLAMIASHYGITYITMQTF 1868
Query: 1193 GSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKAN 1252
++ T ++ L I++ A+EY++LP+R ED E + R+ + N +DPH K+
Sbjct: 1869 ALSLSERTKMKGLLEIVTSAAEYEQLPIRKYEDIVLERIHSRLPVRLSNPNYEDPHTKSF 1928
Query: 1253 LLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQ 1312
+L AHFSR +LP V D K +L + ++ A +D ++ G L + I M + QMV Q
Sbjct: 1929 ILLAAHFSRFELP-PGLVIDQKFILTRVHNLLGACVDTLSSEGHLIACIRPMEMSQMVTQ 1987
Query: 1313 GLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVI--GNFPVSRLHQD 1370
LW ++DS L P ++ L+ G+ V ++D+ E ++ N +++ +
Sbjct: 1988 ALW-DRDSPLKQIPYFDDALIERCNKEGVHDVFDIIDLDDEKRTELLHMDNAHLAKCAEF 2046
Query: 1371 LQRFPRIQVKLRLQRRDIDGENS---LTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWL 1427
+ ++P I + ++ + NS L + + + + + A FP K E WWL
Sbjct: 2047 INKYPDIDIDFEIEDSEDVHANSPSVLIVQLTRELEEDEEVDTTVIAPYFPAQKTEHWWL 2106
Query: 1428 VLGNTNTSELYALKRISFSDRLNTHME-LPSGITTFQGMKLVVVSDCYLGFEQEHSIEAL 1486
V+ + T L A+K+I+ L T ME +P + T + KL SD Y+G + E E
Sbjct: 2107 VISDDKT--LLAIKKITLGRSLTTKMEFVPPAMGTLK-YKLSCFSDSYMGVDYEKEFECN 2163
Query: 1487 V 1487
V
Sbjct: 2164 V 2164
Score = 402 bits (1032), Expect = e-110, Method: Compositional matrix adjust.
Identities = 259/741 (34%), Positives = 397/741 (53%), Gaps = 31/741 (4%)
Query: 664 LLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAEL 723
L+ +K LP + ++A N N IQ+ ++ I + TD N+LL APTG+GKT A L
Sbjct: 500 LVKIKELPEWS-----HQAFLNTQSLNRIQSHLYPIAFGTDENILLCAPTGAGKTNVAML 554
Query: 724 AML-----HL-----FNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDY 773
+L HL FN Q + K+VYIAPLKA+V+E +N++ RL + + E+TGD
Sbjct: 555 CILNELQKHLREDLSFNLQ-NFKIVYIAPLKALVQEMVNNFSKRL-TPYNIRVAELTGDS 612
Query: 774 TPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVS 833
+ II++TPEKWD I+R + +YV V L+I+DE+HLL ERGP+LE IV+
Sbjct: 613 QLTKQQISETQIIVTTPEKWDIITRKANDLSYVNLVRLVIIDEVHLLHDERGPVLESIVA 672
Query: 834 RMRYISSQTERAVRFIGLSTALANAGDLADWLGVG-EIGLFNFKPSVRPVPLEVHIQGYP 892
R+ +T VR +GLS L N D+A +L V + GLF F + RP PL+ G
Sbjct: 673 RIFRHQEETLEQVRLVGLSATLPNYTDVASFLHVDPKKGLFYFDSTYRPCPLKQEFIGIT 732
Query: 893 GKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFL- 951
K RM + N+ Y + H+ VLIFV SR++T TA + A +ET L
Sbjct: 733 EKTPFKRMQTTNEACYEKVMQHAGKNQVLIFVHSRKETAKTARFIRDKALEEETIGHLLR 792
Query: 952 --GMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTS 1009
E L+ +D+NL+ L +G +HHAG+ +DR E+LFA+ IQVLV T+
Sbjct: 793 SDAASREILRAEADSTSDENLKDLLPYGFAIHHAGMRREDRQTSEDLFADGTIQVLVSTA 852
Query: 1010 TLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069
TLAWGVNLPAH VIIKGT+ Y + + + D+LQM+GRAGRPQ+D +G+ +I+
Sbjct: 853 TLAWGVNLPAHTVIIKGTQVYSPEKGIWTELSPQDVLQMLGRAGRPQFDTYGEGIIITAH 912
Query: 1070 PKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINP 1129
+ +Y + + P+ES +L D NAE+ GT+ ED V +L +TYL+ R+ +P
Sbjct: 913 SELQYYLSLMNQQLPIESQFMRRLADCLNAEVSLGTVRSIEDGVDWLGYTYLYVRMLRSP 972
Query: 1130 AYY--GLEDTEAEGLSSYLSRLVQNTFEDLEDSGCV--KMTEDTVEPTMLGTIASQYYLS 1185
A Y G E + + L + L+ + LE + T+ T LG +A+ YY++
Sbjct: 973 ALYSVGPEYDDDKYLVQKRADLLHSAAILLEKCKLLVYNRQSGTLTATELGKVAASYYVT 1032
Query: 1186 YVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLD 1245
+ +++++ + TS + S + E+ +PVR E L +RV + RLD
Sbjct: 1033 HNSMAIYNRLLMQTTSFIELFRVFSFSDEFKHIPVREEEKVELAKLLERVPIPI-RERLD 1091
Query: 1246 DPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMH 1305
+P K N L Q++ SR L V D+ V + RI++A+ +I GW S + +
Sbjct: 1092 EPAAKINALLQSYISRQRLDGFALVADMVYVTQSAGRIMRAIFEISLRRGWSSVATLSLD 1151
Query: 1306 LLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVS 1365
+M+ + LW S L FP ++++ + + Q+ D+ L ++G P
Sbjct: 1152 TCKMIEKRLWPTM-SPLRQFPNCPSEVIRRVEKKEFPW-QRYFDLDPAELGELVG-VPKE 1208
Query: 1366 --RLHQDLQRFPRIQVKLRLQ 1384
R++ +Q FPR+ V+ +Q
Sbjct: 1209 GRRVYNMVQSFPRLSVEAHVQ 1229
>sp|P32639|BRR2_YEAST Pre-mRNA-splicing helicase BRR2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BRR2 PE=1 SV=2
Length = 2163
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/1522 (33%), Positives = 866/1522 (56%), Gaps = 58/1522 (3%)
Query: 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNE 64
Q RI+GLSATLPNY +V +FLRV P+ GLF+FDSS+RP PL+QQ+ GI E N + +
Sbjct: 662 QEYPRIIGLSATLPNYEDVGRFLRV-PKEGLFYFDSSFRPCPLSQQFCGIKERNSLKKLK 720
Query: 65 LLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVD-LARRYEDLEVFNNDTHPQLS 123
+++ CY+KV++S+ +G+Q +VFVHSRK+T +TA L + A ++ ND +
Sbjct: 721 AMNDACYEKVLESINEGNQIIVFVHSRKETSRTATWLKNKFAEENITHKLTKNDAGSK-Q 779
Query: 124 LIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVN 183
++K + + L +L +G HHAG+ RSDR L+E LF++GLL+VLVCTATLAWGVN
Sbjct: 780 ILKTEAANVLDPSLRKLIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVN 839
Query: 184 LPAHTVVIKGTQLYDPKAGGWRDLG---MLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240
LPAHTV+IKGT +Y P+ G W L +L + GRAGRP++D GEGIIIT + YYL
Sbjct: 840 LPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYL 899
Query: 241 RLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGW 300
+L QLPIESQF+S L DNLNAEV G + +A WL YTYL +RM +P+ Y +
Sbjct: 900 SVLNQQLPIESQFVSKLVDNLNAEVVAGNIKCRNDAVNWLAYTYLYVRMLASPMLYKVP- 958
Query: 301 DEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVET 360
++ +D L + +LV A L + +++ +D ++ T+LG IAS FYI ++S++
Sbjct: 959 -DISSDGQLKKFRESLVHSALCILKEQELVLYDAENDVIEATDLGNIASSFYINHASMDV 1017
Query: 361 YNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKHGKI 420
YN L H ++ + S S EF+ + VR EE+ EL+ L++ P+ ++ + K+
Sbjct: 1018 YNRELDEHTTQIDLFRIFSMSEEFKYVSVRYEEKRELKQLLEK-APIPIREDIDDPLAKV 1076
Query: 421 SILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVD 480
++L+Q Y S+ + F+L SD +I + R++RA+FE CL+RGW + +L CK+
Sbjct: 1077 NVLLQSYFSQLKFEGFALNSDIVFIHQNAGRLLRAMFEICLKRGWGHPTRMLLNLCKSAT 1136
Query: 481 RQIWPHQHPLRQFDKELPAEILRKLEERGADL-DRLQEMEEKDIGALIRYTPGGRLVKQY 539
++WP PLRQF K P E++++LE D LQ ++G IR G+ V
Sbjct: 1137 TKMWPTNCPLRQF-KTCPVEVIKRLEASTVPWGDYLQLETPAEVGRAIRSEKYGKQVYDL 1195
Query: 540 LGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYHSE 599
L FP + ++ PITR+V++ + I ++ W + HG+ + + ++++D++ D I + +
Sbjct: 1196 LKRFPKMSVTCNAQPITRSVMRFNIEIIADWIWDMNVHGSLEPFLLMLEDTDGDSILYYD 1255
Query: 600 LFTLTKRMARGETQKLSFTVPIFEPH----PPQYYIRAVSDSWLHAEAFYCISFHNLALP 655
+ +T + G LSFT + + + PP +++ +S++W H+E +SF+ LP
Sbjct: 1256 VLFITPDIV-GHEFTLSFTYELKQHNQNNLPPNFFLTLISENWWHSEFEIPVSFNGFKLP 1314
Query: 656 QARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715
+ T LL+ + + LGN+ + ++ F FN IQ+Q+F LY+++++V +G+ G+
Sbjct: 1315 KKFPPPTPLLENISISTSELGNDDFSEVFEFKTFNKIQSQVFESLYNSNDSVFVGSGKGT 1374
Query: 716 GKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTG-DYT 774
GKT AELA+L+ + Q+ + VYI P + ++DW R G +++ G D +
Sbjct: 1375 GKTAMAELALLNHWR-QNKGRAVYINPSGEKIDFLLSDWNKRFSHLAGGKIINKLGNDPS 1433
Query: 775 PDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVS 833
+L L + ++++TP +++ +SR W R ++ + LMI D+ H + G + E ++S
Sbjct: 1434 LNLKLLAKSHVLLATPVQFELLSRRWRQRKNIQSLELMIYDDAHEISQGVYGAVYETLIS 1493
Query: 834 RMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPG 893
RM +I++Q E+ +RF+ LS LANA D +W G+ + ++NF PS R PLE++IQ +
Sbjct: 1494 RMIFIATQLEKKIRFVCLSNCLANARDFGEWAGMTKSNIYNFSPSERIEPLEINIQSFKD 1553
Query: 894 KFYCPRMNSMNKPAYAAICTHSPTK-PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG 952
+ SM + A+ A + + +F+ SR+ A ++F+ + E L
Sbjct: 1554 VEHISFNFSMLQMAFEASAAAAGNRNSSSVFLPSRKDCMEVASAFMKFSKAIEW--DMLN 1611
Query: 953 MPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLA 1012
+ EE + + ++TD +LR L+ G+G+ + G+ D +V+ L+ + VL+ + +
Sbjct: 1612 VEEEQIVPYIEKLTDGHLRAPLKHGVGILYKGMASNDERIVKRLYEYGAVSVLLISKDCS 1671
Query: 1013 WGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072
VII GT YDG +Y+ + I ++L+M+G A GK +IL K
Sbjct: 1672 -AFACKTDEVIILGTNLYDGAEHKYMPYTINELLEMVGLASGND-SMAGKVLILTSHNMK 1729
Query: 1073 SFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYY 1132
++YKKFL EP P ES L+ +HD N EI + I K+D V + +++Y +RR+ +NP+YY
Sbjct: 1730 AYYKKFLIEPLPTESYLQYIIHDTLNNEIANSIIQSKQDCVDWFTYSYFYRRIHVNPSYY 1789
Query: 1133 GLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTML----------------- 1175
G+ DT G+S +LS LV+ DL +S +++ + E T
Sbjct: 1790 GVRDTSPHGISVFLSNLVETCLNDLVESSFIEIDDTEAEVTAEVNGGDDEATEIISTLSN 1849
Query: 1176 GTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQR- 1234
G IAS Y +S+ T+ F S++ ++L+ L++LS A E++ +P+R + LS+R
Sbjct: 1850 GLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRL 1909
Query: 1235 -VRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICAN 1293
+RF ++ K LL QA+FSRL+LP+ D+ DLK +L++ + +I ++DI +
Sbjct: 1910 PLRFP-EHTSSGSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSA 1967
Query: 1294 SGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKE 1353
+G+L+++ T M L QM++QG+W + D+ L P NN +L + + TV ++ + E
Sbjct: 1968 NGYLNAT-TAMDLAQMLIQGVW-DVDNPLRQIPHFNNKILEKCKEINVETVYDIMALEDE 2025
Query: 1354 NLQTV--IGNFPVSRLHQDLQRFPRIQVKLRLQRRD--IDG-ENSLTLNIRMD-KMNSWK 1407
+ + + ++++ + +P +++ L D I G + +T+ + D + + +
Sbjct: 2026 ERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRDVEPENLQ 2085
Query: 1408 NTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSDRLNTH-MELPSGITTFQGMK 1466
TS ++P K E+WWLVLG + ELYA+K+++ + + +E + + +
Sbjct: 2086 VTSE----KYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPTSGKHNLT 2141
Query: 1467 LVVVSDCYLGFEQEHSIEALVE 1488
+ V D YL ++E S E V+
Sbjct: 2142 IWCVCDSYLDADKELSFEINVK 2163
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 242/716 (33%), Positives = 392/716 (54%), Gaps = 21/716 (2%)
Query: 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAML----HLFNTQ------SDMK 736
+ NPIQ+++FH + D+N+L+ APTGSGKT A L +L H +N + S K
Sbjct: 497 TSLNPIQSKVFHAAFEGDSNMLICAPTGSGKTNIALLTVLKALSHHYNPKTKKLNLSAFK 556
Query: 737 VVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGI 796
+VYIAPLKA+V+E++ +++ RL + LG ++ E+TGD + +++STPEKWD
Sbjct: 557 IVYIAPLKALVQEQVREFQRRL-AFLGIKVAELTGDSRLSRKQIDETQVLVSTPEKWDIT 615
Query: 797 SRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856
+RN ++ V+ V L+I+DEIHLL +RGP+LE IV+R + S + R IGLS L
Sbjct: 616 TRNSNNLAIVELVRLLIIDEIHLLHDDRGPVLESIVARTFWASKYGQEYPRIIGLSATLP 675
Query: 857 NAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTH-S 915
N D+ +L V + GLF F S RP PL G + ++ +MN Y + +
Sbjct: 676 NYEDVGRFLRVPKEGLFYFDSSFRPCPLSQQFCGIKERNSLKKLKAMNDACYEKVLESIN 735
Query: 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFL---GMPEEDLQMVLSQVTDQNLRQ 972
+++FV SR++T TA L A + + ++ L+ + V D +LR+
Sbjct: 736 EGNQIIVFVHSRKETSRTATWLKNKFAEENITHKLTKNDAGSKQILKTEAANVLDPSLRK 795
Query: 973 TLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDG 1032
++ GIG HHAGL DRSL E+LFA+ +QVLVCT+TLAWGVNLPAH VIIKGT+ Y
Sbjct: 796 LIESGIGTHHAGLTRSDRSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSP 855
Query: 1033 KTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQ 1092
+ + D+LQM+GRAGRP+YD G+ +I+ + +Y L + P+ES +
Sbjct: 856 EKGSWEQLSPQDVLQMLGRAGRPRYDTFGEGIIITDQSNVQYYLSVLNQQLPIESQFVSK 915
Query: 1093 LHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEG-LSSYLSRLVQ 1151
L D+ NAE+V+G I + DAV++L++TYL+ R+ +P Y + D ++G L + LV
Sbjct: 916 LVDNLNAEVVAGNIKCRNDAVNWLAYTYLYVRMLASPMLYKVPDISSDGQLKKFRESLVH 975
Query: 1152 NTFEDLEDSGCV--KMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHIL 1209
+ L++ V D +E T LG IAS +Y+++ ++ ++ + T+ I
Sbjct: 976 SALCILKEQELVLYDAENDVIEATDLGNIASSFYINHASMDVYNRELDEHTTQIDLFRIF 1035
Query: 1210 SGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDY 1269
S + E+ + VR+ E + L ++ + + +DDP K N+L Q++FS+L
Sbjct: 1036 SMSEEFKYVSVRYEEKRELKQLLEKAPIPIRED-IDDPLAKVNVLLQSYFSQLKFEGFAL 1094
Query: 1270 VTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMN 1329
+D+ + + R+++AM +IC GW + ++L + +W + L F
Sbjct: 1095 NSDIVFIHQNAGRLLRAMFEICLKRGWGHPTRMLLNLCKSATTKMW-PTNCPLRQFKTCP 1153
Query: 1330 NDLLGTLRARGISTVQQL-LDIPKENLQTVIGNFPVSRLHQDLQRFPRIQVKLRLQ 1384
+++ L A + L L+ P E + + +++ L+RFP++ V Q
Sbjct: 1154 VEVIKRLEASTVPWGDYLQLETPAEVGRAIRSEKYGKQVYDLLKRFPKMSVTCNAQ 1209
>sp|A2RUV5|HFM1_XENTR Probable ATP-dependent DNA helicase HFM1 OS=Xenopus tropicalis
GN=hfm1 PE=2 SV=1
Length = 1336
Score = 344 bits (882), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 235/752 (31%), Positives = 375/752 (49%), Gaps = 61/752 (8%)
Query: 671 PVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFN 730
PVT + F +FN IQ++ L ++D N +L APTGSGKT+ ELA++ L
Sbjct: 132 PVTEIPKQFRTVFKEFPYFNYIQSKALEHLLYSDRNFVLCAPTGSGKTVIFELAIIRLLM 191
Query: 731 TQ----SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDY-TPDLMALLSADI 785
+++K+VY+AP+KA+ +R +DWK + +G E+TGD DL + A I
Sbjct: 192 QVPMPWTNVKIVYMAPIKALCGQRYDDWKAKF-GPVGLNCKELTGDTEMDDLFEIQHAHI 250
Query: 786 IISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-RGPILEVIVSRMRYISSQTER 844
I++TPEKWD ++R W V+ V L ++DE+H+L E RG LEV+VSRM+ I S +
Sbjct: 251 IMTTPEKWDSMTRKWKDNTLVQLVRLFLIDEVHILKEENRGATLEVVVSRMKTIYSLSHL 310
Query: 845 A--------VRFIGLSTALANAGDLADWL------GVGEIGLFNFKPSVRPVPLEVHIQG 890
+ +RF+ +S + N D+ADWL GV S RPV L + G
Sbjct: 311 SEDRKAFIPMRFVAVSATIPNVEDIADWLSDENSPGV----CMKMDESSRPVKLRKVVLG 366
Query: 891 YPGKFYCPRMNS-------MNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAAS 943
+P C S +N I T+S +P L+F S+R+ +Q AAS
Sbjct: 367 FP----CSTKQSEFKFDLTLNYKIANIIQTYSDGRPTLVFCSTRKG--------VQQAAS 414
Query: 944 DETPRQFLGMP---EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANN 1000
T M ++ LQ + + D LR LQ+G+G HHAG++ DR ++E F
Sbjct: 415 ILTKDAKFVMSIEHKQRLQKCANSIKDSKLRDVLQYGVGYHHAGVDISDRKVIENSFLIG 474
Query: 1001 KIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQH 1060
+ VL TSTLA GVNLPAHLVI+K T +Y + + ++ TDILQM+GRAGRPQ+D
Sbjct: 475 DLPVLFTTSTLAMGVNLPAHLVIVKSTMHY--VSGMFQEYSETDILQMIGRAGRPQFDST 532
Query: 1061 GKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTY 1120
AVI+ K Y L +ESSL L +H NAEI TI + A+ ++ T+
Sbjct: 533 ATAVIMTRLSTKEKYVHMLDGADTIESSLHKHLVEHLNAEIALHTITDVKVALEWIRSTF 592
Query: 1121 LFRRLAINPAYYGL-EDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED-TVEPTMLGTI 1178
L+ R NPAYYG E + G+ + L L DL G +KM E+ +PT G +
Sbjct: 593 LYIRALKNPAYYGFSEGLDKIGIEAKLQELCLKNLNDLSSLGLIKMDEEINFKPTETGKL 652
Query: 1179 ASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQ----- 1233
+ YY+++ T +F + G +T E+ + ++S SE+ ++ +R NE L++
Sbjct: 653 MALYYIAFNTAKLFHTIRGTETLAEL-VSLISSCSEFSDVQLRANERRVLNTLNKDKNRV 711
Query: 1234 RVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICA- 1292
+R+ ++ ++ +K N L QAH + + D+ + R+ + + + A
Sbjct: 712 TIRYPME-GKIKTKEMKVNCLIQAHLGCILVQDFSLTQDISKIFRHGTRLAKCLSEFLAL 770
Query: 1293 NSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPK 1352
S+ + + L + LW + L + G++T +++ D
Sbjct: 771 QENKFSAFLNALILTKCFKSKLWENSSHISKQLEKIGVTLANAMVNAGLTTFKKIEDTNA 830
Query: 1353 ENLQTVIGNFPV--SRLHQDLQRFPRIQVKLR 1382
L+ ++ P +++ + + P+ ++K +
Sbjct: 831 RELELIVNRHPPFGNQIKESVAHLPKYEIKFQ 862
Score = 192 bits (487), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 163/580 (28%), Positives = 278/580 (47%), Gaps = 47/580 (8%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFF-FDSSYRPIPLAQQYIGISEPNFAARNELL 66
+R V +SAT+PN ++A +L G+ D S RP+ L + +G P ++E
Sbjct: 320 MRFVAVSATIPNVEDIADWLSDENSPGVCMKMDESSRPVKLRKVVLGF--PCSTKQSEFK 377
Query: 67 SEIC--YK--KVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQ- 121
++ YK ++ + G +VF +RK + A L A+ +E H Q
Sbjct: 378 FDLTLNYKIANIIQTYSDGRPTLVFCSTRKGVQQAASILTKDAKFVMSIE------HKQR 431
Query: 122 LSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWG 181
L + S+ +D+++ VG HHAG+ SDR + E F G L VL T+TLA G
Sbjct: 432 LQKCANSIKDSKLRDVLQY---GVGYHHAGVDISDRKVIENSFLIGDLPVLFTTSTLAMG 488
Query: 182 VNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIF---GRAGRPQFDRSGEGIIITSHDKLAY 238
VNLPAH V++K T Y +G +++ DI GRAGRPQFD + +I+T
Sbjct: 489 VNLPAHLVIVKSTMHY--VSGMFQEYSETDILQMIGRAGRPQFDSTATAVIMTRLSTKEK 546
Query: 239 YLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGI 298
Y+ +L IES L ++LNAE+AL T+T+VK A W+ T+L IR NP YG
Sbjct: 547 YVHMLDGADTIESSLHKHLVEHLNAEIALHTITDVKVALEWIRSTFLYIRALKNPAYYGF 606
Query: 299 --GWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYS 356
G D++ + K + L L +++ DE+ NF TE G++ + +YI ++
Sbjct: 607 SEGLDKI----GIEAKLQELCLKNLNDLSSLGLIKMDEEI-NFKPTETGKLMALYYIAFN 661
Query: 357 SVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVK----GG 412
+ + ++ +R +E++ ++S SEF ++ +R E+ L TL + V ++ G
Sbjct: 662 TAKLFH-TIRGTETLAELVSLISSCSEFSDVQLRANERRVLNTLNKDKNRVTIRYPMEGK 720
Query: 413 PSNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFE-TCLRRGWCEMSLF 471
K K++ LIQ ++ + FSL D + I R+ + L E L+ L
Sbjct: 721 IKTKEMKVNCLIQAHLGCILVQDFSLTQDISKIFRHGTRLAKCLSEFLALQENKFSAFLN 780
Query: 472 MLEYCKAVDRQIWPH-QHPLRQFDKELPAEILRKLEERG-ADLDRLQEMEEKDIGALI-R 528
L K ++W + H +Q +K + + + G ++++ +++ ++ R
Sbjct: 781 ALILTKCFKSKLWENSSHISKQLEK-IGVTLANAMVNAGLTTFKKIEDTNARELELIVNR 839
Query: 529 YTPGGRLVKQYLGYFPSIQLS--------ATVSPITRTVL 560
+ P G +K+ + + P ++ AT + + TVL
Sbjct: 840 HPPFGNQIKESVAHLPKYEIKFQQLAKYRATTAEVVLTVL 879
>sp|A2PYH4|HFM1_HUMAN Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=2
SV=2
Length = 1435
Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 251/759 (33%), Positives = 371/759 (48%), Gaps = 61/759 (8%)
Query: 570 FTWKDHFHGAAQRWWIIVQDSESD------HIYHSELFTLTKRMARGETQKLSFTVPIFE 623
F D+ HG+A D+E D I +E+ R QK ++ +F
Sbjct: 167 FKISDNIHGSAYS-----NDNELDSHIGSVKIVQTEMNKGKSRNYSNSKQKFQYSANVFT 221
Query: 624 PHPPQYYIRAVSDSWLHAEAFYCISFHNLALPQARTSHTE--LLDLKPLPVTALGNNIYE 681
+ A S S + F SF P TE L LK VT +
Sbjct: 222 AN------NAFSASEIGEGMFKAPSFSVAFQPHDIQEVTENGLGSLKA--VTEIPAKFRS 273
Query: 682 ALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS----DMKV 737
F +FN IQ++ F L +TD N ++ APTGSGKT+ ELA+ L ++K+
Sbjct: 274 IFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKI 333
Query: 738 VYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYT-PDLMALLSADIIISTPEKWDGI 796
VY+AP+KA+ +R +DWK++ +G E+TGD DL + A II++TPEKWD +
Sbjct: 334 VYMAPIKALCSQRFDDWKEKF-GPIGLNCKELTGDTVMDDLFEIQHAHIIMTTPEKWDSM 392
Query: 797 SRNWHSRNYVKKVGLMILDEIHLLGAE-RGPILEVIVSRMRYISS--------QTERAVR 847
+R W + V+ V L ++DE+H++ E RGP LEV+VSRM+ + S T +R
Sbjct: 393 TRKWRDNSLVQLVRLFLIDEVHIVKDENRGPTLEVVVSRMKTVQSVSQTLKNTSTAIPMR 452
Query: 848 FIGLSTALANAGDLADWLGVGEIGLFNFK--PSVRPVPLEVHIQGYPGKFYCPRMN---S 902
F+ +S + NA D+A+WL GE K S RPV L+ + G+P +
Sbjct: 453 FVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGFPCSSNQTEFKFDLT 512
Query: 903 MNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVL 962
+N + I +S KP L+F ++R+ + A L++ A T Q ++ LQ
Sbjct: 513 LNYKIASVIQMYSDQKPTLVFCATRKGVQQAASVLVKDAKFIMTVEQ-----KQRLQKYA 567
Query: 963 SQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLV 1022
V D LR L+ G HHAG+ DR +VE F + VL TSTLA GVNLPAHLV
Sbjct: 568 YSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTSTLAMGVNLPAHLV 627
Query: 1023 IIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEP 1082
+IK T +Y G + ++ TDILQM+GRAGRPQ+D AVI+ + Y + L
Sbjct: 628 VIKSTMHYAGGL--FEEYSETDILQMIGRAGRPQFDTTATAVIMTRLSTRDKYIQMLACR 685
Query: 1083 FPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDT-EAEG 1141
VESSL L +H NAEIV TI AV ++ T L+ R NP++YG +G
Sbjct: 686 DTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNPSHYGFASGLNKDG 745
Query: 1142 LSSYLSRLVQNTFEDLEDSGCVKMTED-TVEPTMLGTIASQYYLSYVTVSMFGSNIGPDT 1200
+ + L L DL +KM E +PT G + + YY+++ TV F + G +T
Sbjct: 746 IEAKLQELCLKNLNDLSSLDLIKMDEGVNFKPTEAGRLMAWYYITFETVKKFYTISGKET 805
Query: 1201 SLEVFLHILSGASEYDELPVRHNEDNHNEALSQ-----RVRFAVDNNRLDDPHVKANLLF 1255
L + +++G E+ ++ +R NE L++ +RF ++ R+ +K N L
Sbjct: 806 -LSDLVTLIAGCKEFLDIQLRINEKKTLNTLNKDPNRITIRFPME-GRIKTREMKVNCLI 863
Query: 1256 QAHFSRLDLPISDY--VTDLKSVLDQSIRIIQAMIDICA 1292
QA +PI D+ D + RI + + D A
Sbjct: 864 QAQLGC--IPIQDFALTQDTAKIFRHGSRITRWLSDFVA 900
Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 168/578 (29%), Positives = 269/578 (46%), Gaps = 49/578 (8%)
Query: 3 STQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFF-FDSSYRPIPLAQQYIGISEPNFAA 61
ST +R V +SAT+PN ++A++L + D S+RP+ L + +G P +
Sbjct: 446 STAIPMRFVAVSATIPNAEDIAEWLSDGERPAVCLKMDESHRPVKLQKVVLGF--PCSSN 503
Query: 62 RNELLSEICYKKVVDSLRQGHQ----AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNND 117
+ E ++ + S+ Q + +VF +RK + A LV A+ +E
Sbjct: 504 QTEFKFDLTLNYKIASVIQMYSDQKPTLVFCATRKGVQQAASVLVKDAKFIMTVE----- 558
Query: 118 THPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTAT 177
Q ++K R+ L ++ HHAGM SDR + E F+ G L VL T+T
Sbjct: 559 ---QKQRLQKYAYSVRDSKLRDILKDGAAYHHAGMELSDRKVVEGAFTVGDLPVLFTTST 615
Query: 178 LAWGVNLPAHTVVIKGTQLYDPKAGG----WRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233
LA GVNLPAH VVIK T Y AGG + + +L + GRAGRPQFD + +I+T
Sbjct: 616 LAMGVNLPAHLVVIKSTMHY---AGGLFEEYSETDILQMIGRAGRPQFDTTATAVIMTRL 672
Query: 234 DKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNP 293
Y+++L + +ES L ++LNAE+ L T+T+V A W+ T L IR NP
Sbjct: 673 STRDKYIQMLACRDTVESSLHRHLIEHLNAEIVLHTITDVNIAVEWIRSTLLYIRALKNP 732
Query: 294 LAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYI 353
YG + + K + L L +++ DE NF TE GR+ + +YI
Sbjct: 733 SHYGFASG--LNKDGIEAKLQELCLKNLNDLSSLDLIKMDE-GVNFKPTEAGRLMAWYYI 789
Query: 354 QYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVK--- 410
+ +V+ + + + S+++ +++ EF +I +R E+ L TL + + ++
Sbjct: 790 TFETVKKFYTISGKE-TLSDLVTLIAGCKEFLDIQLRINEKKTLNTLNKDPNRITIRFPM 848
Query: 411 -GGPSNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRAL--FETCLRRGWCE 467
G + K++ LIQ + I F+L D A I +RI R L F + +
Sbjct: 849 EGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFVAAQEKKFAV 908
Query: 468 MSLFMLEYCKAVDRQIWPHQ-HPLRQFDK---ELPAEILRKLEERGADLDRLQEMEEKDI 523
+ L L K ++W + H +Q +K L I+ A L +++EE D
Sbjct: 909 L-LNSLILAKCFRCKLWENSLHVSKQLEKIGITLSNAIV------NAGLTSFKKIEETDA 961
Query: 524 GA----LIRYTPGGRLVKQYLGYFPSIQLSATVSPITR 557
L R+ P G +K+ + Y P +L V ITR
Sbjct: 962 RELELILNRHPPFGTQIKETVMYLPKYELK--VEQITR 997
>sp|P51979|HFM1_YEAST ATP-dependent DNA helicase MER3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HFM1 PE=1 SV=3
Length = 1187
Score = 281 bits (720), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 223/768 (29%), Positives = 370/768 (48%), Gaps = 79/768 (10%)
Query: 668 KPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLH 727
K L T L ++ + ++ F+ FN +Q++ F +Y ++ N ++ +PTGSGKT+ ELA+L
Sbjct: 119 KCLSTTILPDS-FRGVFKFTEFNKMQSEAFPSIYESNENCIISSPTGSGKTVLFELAILR 177
Query: 728 LFN-TQSDM---KVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSA 783
L T SD K++YIAP K++ E +W V+ L M+ + A
Sbjct: 178 LIKETNSDTNNTKIIYIAPTKSLCYEMYKNWFPSFVN-LSVGMLTSDTSFLETEKAK-KC 235
Query: 784 DIIISTPEKWDGISRNW--HSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQ 841
+III+TPEKWD ++R W +SR + + V L+++DEIH + +RG LEVI++RM +
Sbjct: 236 NIIITTPEKWDLLTRRWSDYSRLF-ELVKLVLVDEIHTIKEKRGASLEVILTRMNTMC-- 292
Query: 842 TERAVRFIGLSTALANAGDLADWLGVGE---IGLFNFKPSVRPVPLEVHIQGYPGKFYCP 898
+ +RF+ LS + N DLA WL + +F S R V L + GY F C
Sbjct: 293 --QNIRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVYGYS--FNCK 348
Query: 899 RMNSMNKPAY------AAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG 952
N K A I H+ +PVLIF +R T TA L+ ++ ++
Sbjct: 349 --NDFQKDAIYNSKLIEIIEKHADNRPVLIFCPTRASTISTAKFLLNNHIFSKSKKRCNH 406
Query: 953 MPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLA 1012
P +D+ L + +Q GI HHAG++ +DR+ VE+ F I +L TSTLA
Sbjct: 407 NP-----------SDKILNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILCSTSTLA 455
Query: 1013 WGVNLPAHLVIIKGTEYYDG-KTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071
GVNLPA+LVIIKGT+ ++ + + Y D D+LQM+GRAGRPQ++ HG AVI+
Sbjct: 456 VGVNLPAYLVIIKGTKSWNSSEIQEYSDL---DVLQMIGRAGRPQFETHGCAVIMTDSKM 512
Query: 1072 KSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAY 1131
K Y+ ++ +ESSL L +H AE T++ E AV++L T+ + R NPA
Sbjct: 513 KQTYENLIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKNPAA 572
Query: 1132 Y----------GLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQ 1181
Y +ED++ YL + L + ++ + T G ++
Sbjct: 573 YQEVNRYVSFHSVEDSQINQFCQYL-------LDTLVKVKIIDISNGEYKSTAYGNAMTR 625
Query: 1182 YYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDN--HNEALSQRVRFAV 1239
+Y+S+ ++ F N SL+ L++L+ + E+ + VRHNE LS +++
Sbjct: 626 HYISFESMKQF-INAKKFLSLQGILNLLATSEEFSVMRVRHNEKKLFKEINLSPLLKYPF 684
Query: 1240 DNNR-----LDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQ--------SIRIIQA 1286
+ +D K +LL Q L+ P + + L L Q R+++
Sbjct: 685 LTEKKQSQIIDRVSQKVSLLIQYELGGLEFPSYEGASKLHQTLVQDKFLVFRHCFRLLKC 744
Query: 1287 MIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQ 1346
M+D +S + LL+ + W L + + L GI+ +++
Sbjct: 745 MVDTFIEKSDGTSLKNTLFLLRSLNGHCWENTPMVLRQLKTIGLVSVRRLIRHGITNLEE 804
Query: 1347 LLDIPKENLQTVIGNFPVS---RLHQDLQRFPRIQVKLRLQRRDIDGE 1391
+ + ++ + N + ++ D+ P + ++ +L+ I+ E
Sbjct: 805 MGHLSDTQIEYYL-NLKIGNGIKIKNDISLLPCLNIRTKLENCKIENE 851
Score = 148 bits (373), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 130/481 (27%), Positives = 221/481 (45%), Gaps = 41/481 (8%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEM--GLFFFDSSYRPIPLAQQYIGISEPNFAARNEL 65
IR V LSAT+PN ++A +L+ N E+ + FD SYR + L + G S F +N+
Sbjct: 295 IRFVALSATVPNIEDLALWLKTNNELPANILSFDESYRQVQLTKFVYGYS---FNCKNDF 351
Query: 66 LSEICYK----KVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQ 121
+ Y ++++ ++F +R T+ TA+ L++ H
Sbjct: 352 QKDAIYNSKLIEIIEKHADNRPVLIFCPTRASTISTAKFLLN--------------NHIF 397
Query: 122 LSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWG 181
K+ +K L E + HHAG+ DR E+ F G + +L T+TLA G
Sbjct: 398 SKSKKRCNHNPSDKILNECMQQGIAFHHAGISLEDRTAVEKEFLAGSINILCSTSTLAVG 457
Query: 182 VNLPAHTVVIKGTQLYDP-KAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240
VNLPA+ V+IKGT+ ++ + + DL +L + GRAGRPQF+ G +I+T Y
Sbjct: 458 VNLPAYLVIIKGTKSWNSSEIQEYSDLDVLQMIGRAGRPQFETHGCAVIMTDSKMKQTYE 517
Query: 241 RLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGW 300
L+ +ES +L ++L AE +L TV +++ A WL T+ +R NP AY
Sbjct: 518 NLIHGTDVLESSLHLNLIEHLAAETSLETVYSIETAVNWLRNTFFYVRFGKNPAAY---- 573
Query: 301 DEVIADPSLSLKQRALVTDAARAL--DKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSV 358
EV S + + + + L K+ D +G + T G + YI + S+
Sbjct: 574 QEVNRYVSFHSVEDSQINQFCQYLLDTLVKVKIIDISNGEYKSTAYGNAMTRHYISFESM 633
Query: 359 ETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQN-----ELETLVQTLCPVEVKGGP 413
+ + ++ ++ ++ +++ S EF + VR E+ L L++ E K
Sbjct: 634 KQFINA-KKFLSLQGILNLLATSEEFSVMRVRHNEKKLFKEINLSPLLKYPFLTEKKQSQ 692
Query: 414 --SNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLF 471
K+S+LIQ + G ++ F A+ + +L + +F C R C + F
Sbjct: 693 IIDRVSQKVSLLIQYEL--GGLE-FPSYEGASKLHQTLVQDKFLVFRHCFRLLKCMVDTF 749
Query: 472 M 472
+
Sbjct: 750 I 750
>sp|O59025|HELS_PYRHO Putative ski2-type helicase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=PH1280 PE=3 SV=1
Length = 715
Score = 204 bits (518), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 198/692 (28%), Positives = 327/692 (47%), Gaps = 89/692 (12%)
Query: 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLK 744
S P Q + N L+ PT SGKT+ AE+A+++ + K VY+ PLK
Sbjct: 20 GISELYPPQAEALTSGILKGENALIAIPTASGKTLIAEIAIVNRLLKEGG-KAVYLVPLK 78
Query: 745 AIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRN 804
A+ E+ ++KD +LG ++ TGDY L DIII+T EK+D + R H +
Sbjct: 79 ALAEEKFKEFKD--WEELGLKVAMATGDYDSKDEWLGGYDIIIATAEKFDSLLR--HGSS 134
Query: 805 YVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLAD 863
+++ V ++++DEIHL+G+ +RG LE I+++M RA + IGLS + N +LA+
Sbjct: 135 WIRNVKVLVVDEIHLIGSRDRGATLEFIITQM------LNRA-QIIGLSATIGNPEELAE 187
Query: 864 WLGVGEIGLFNFKPSVRPVPLE--VHIQGY----PGKFYCPRMNSMNKPAYAAICTHSPT 917
WL I K RPV L V QG+ GK + NS + Y AI +
Sbjct: 188 WLNAKLI-----KSDWRPVKLRRGVFYQGFVFWEDGK--TEKFNSWEELVYDAIKR---S 237
Query: 918 KPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE--EDLQMVLSQVTDQNLRQTLQ 975
K L+FV+ RR+ TAL+L + + T ++ + E E L+ T++ L + LQ
Sbjct: 238 KGSLVFVNMRRKAEKTALELSKKIRNFLTKKELRELKELAESLE---ENPTNEKLAKALQ 294
Query: 976 FGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTK 1035
G+ HHAGL ++R LVEE F I+V+V T TL+ G+N PA VI++ T
Sbjct: 295 GGVAFHHAGLGREERVLVEENFKKGLIKVVVATPTLSAGINTPAFRVIVR-------DTW 347
Query: 1036 RYVDF-----PITDILQMMGRAGRPQYDQHGKAVIL--VHEPKKSFYKKFLYEPFPVESS 1088
RY +F PI +I QMMGRAGRP+YD+ G+A+I+ EP + +P + S
Sbjct: 348 RYSEFGMERIPILEIQQMMGRAGRPKYDEVGEAIIVSTTEEPSTVMERYIKGKPEKLFSQ 407
Query: 1089 LRDQ--LHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYL 1146
L ++ L A I + + +L T+ + +P Y LED + +
Sbjct: 408 LSNESILRGQILALIATFNFSSFREIYDFLERTF-YAYQGKDP--YTLEDR----IRDIV 460
Query: 1147 SRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGS---NIGPDTSLE 1203
L++N F ++ +D ++ LG ++ Y+ +T +F I D +
Sbjct: 461 YFLLENEFIEI-------TLDDEIKALPLGIRTAKLYIDPMTAKIFKDTLPKIEKDPNPL 513
Query: 1204 VFLHILSGASEYDELPVRHNE----DNHNEALSQRVRFAVD--NNRLDDPHVKANLLFQA 1257
LH++S + LP E ++ + R+ F +D + R K L+ A
Sbjct: 514 GILHVISLTPDLIPLPYGKKELPMLEDEYYSFKDRLYFELDWEDERKFLRAFKTALVLNA 573
Query: 1258 HFSRLDLPISDYVT-------DLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQM- 1309
+ ++P + V D+ +++ + ++ ++ +I + I + L++
Sbjct: 574 WIN--EVPEGEIVEKFNVEPGDIYRIVETAEWLVYSLKEIAKTLEYSQDVINYLETLRVR 631
Query: 1310 VMQGLWFEQDSALWMFPCMNNDLLGTLRARGI 1341
V G+ E + P M ++G RAR +
Sbjct: 632 VKHGIREE------LIPLMELPMIGRKRARAL 657
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 116/234 (49%), Gaps = 23/234 (9%)
Query: 9 RIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQ----QYIGISEPNFAARNE 64
+I+GLSAT+ N E+A++L S +RP+ L + Q E +
Sbjct: 171 QIIGLSATIGNPEELAEWLNAK------LIKSDWRPVKLRRGVFYQGFVFWEDGKTEKFN 224
Query: 65 LLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSL 124
E+ Y D++++ ++VFV+ R+ KTA +L R + + + L
Sbjct: 225 SWEELVY----DAIKRSKGSLVFVNMRRKAEKTALELSKKIRNF----LTKKELRELKEL 276
Query: 125 IKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNL 184
+ N+ L + V HHAG+ R +R L E F +GL+KV+V T TL+ G+N
Sbjct: 277 AESLEENPTNEKLAKALQGGVAFHHAGLGREERVLVEENFKKGLIKVVVATPTLSAGINT 336
Query: 185 PAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIIITSHDK 235
PA V+++ T Y G + +L+I GRAGRP++D GE II+++ ++
Sbjct: 337 PAFRVIVRDTWRYS--EFGMERIPILEIQQMMGRAGRPKYDEVGEAIIVSTTEE 388
>sp|O73946|HELS_PYRFU Putative ski2-type helicase OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=PF0677 PE=1 SV=1
Length = 720
Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 168/521 (32%), Positives = 258/521 (49%), Gaps = 62/521 (11%)
Query: 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748
F P Q + N L+ PT SGKT+ AE+AM+H TQ K VYI PLKA+
Sbjct: 24 FYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGG-KAVYIVPLKALAE 82
Query: 749 ERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKK 808
E+ +++D ++G + TGDY L DIII+T EK+D + R H +++K
Sbjct: 83 EKFQEFQD--WEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLR--HGSSWIKD 138
Query: 809 VGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGV 867
V +++ DEIHL+G+ +RG LEVI++ M + IGLS + N +LA+WL
Sbjct: 139 VKILVADEIHLIGSRDRGATLEVILAHML-------GKAQIIGLSATIGNPEELAEWLN- 190
Query: 868 GEIGLFNFKPSVRPVPLE--VHIQGYPG--KFYCPRMNSMNKPAYAAICTHSPTKPVLIF 923
E+ + ++ RPV L V QG+ R +S + Y AI K LIF
Sbjct: 191 AELIVSDW----RPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI---RKKKGALIF 243
Query: 924 VSSRRQTRLTALDLIQFAASDETPRQFLGMPE--EDLQMVLSQVTDQNLRQTLQFGIGLH 981
V+ RR+ AL+L + S T + + E + L+ T++ L + ++ G+ H
Sbjct: 244 VNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLE---ENPTNEKLAKAIRGGVAFH 300
Query: 982 HAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDF- 1040
HAGL +R LVEE F I+ +V T TL+ G+N PA VII+ RY DF
Sbjct: 301 HAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFRVIIR-------DIWRYSDFG 353
Query: 1041 ----PITDILQMMGRAGRPQYDQHGKAVIL--VHEPKKSFYKKFLYEPFPVESSLRDQ-- 1092
PI ++ QM+GRAGRP+YD+ G+ +I+ +P++ +P + S L ++
Sbjct: 354 MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESN 413
Query: 1093 LHDHFNAEIVSGTIFHKEDAVHYLSWT-YLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQ 1151
L A I + E+ + ++S T Y ++R Y LE E + + L L++
Sbjct: 414 LRSQVLALIATFGYSTVEEILKFISNTFYAYQR----KDTYSLE----EKIRNILYFLLE 465
Query: 1152 NTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMF 1192
N F ++ ED + P LG ++ Y+ T MF
Sbjct: 466 NEFIEIS-------LEDKIRPLSLGIRTAKLYIDPYTAKMF 499
Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 155/310 (50%), Gaps = 61/310 (19%)
Query: 9 RIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQ--YIGI------SEPNFA 60
+I+GLSAT+ N E+A++L N E+ + S +RP+ L + Y G S F+
Sbjct: 171 QIIGLSATIGNPEELAEWL--NAELIV----SDWRPVKLRRGVFYQGFVTWEDGSIDRFS 224
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ EL V D++R+ A++FV+ R+ + A ++L+++ + L T P
Sbjct: 225 SWEEL--------VYDAIRKKKGALIFVNMRRKAERVA---LELSKKVKSLL-----TKP 268
Query: 121 QLSLIKK--DVMKSR--NKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTA 176
++ + + D ++ N+ L + V HHAG+ R +R L E F +G++K +V T
Sbjct: 269 EIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATP 328
Query: 177 TLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI--------FGRAGRPQFDRSGEGI 228
TL+ G+N PA V+I+ Y D GM I GRAGRP++D GEGI
Sbjct: 329 TLSAGINTPAFRVIIRDIWRYS-------DFGMERIPIIEVHQMLGRAGRPKYDEVGEGI 381
Query: 229 IITSHDK----LAYYL----RLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWL 280
I+++ D + +Y+ L SQL E S+L+ + A +A + V+E ++
Sbjct: 382 IVSTSDDPREVMNHYIFGKPEKLFSQLSNE----SNLRSQVLALIATFGYSTVEEILKFI 437
Query: 281 GYTYLSIRMK 290
T+ + + K
Sbjct: 438 SNTFYAYQRK 447
>sp|Q97AI2|HELS_THEVO Putative ski2-type helicase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0828 PE=3 SV=1
Length = 674
Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 164/525 (31%), Positives = 259/525 (49%), Gaps = 80/525 (15%)
Query: 701 YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVS 760
+ N+++ PT +GKT+ A A+ F + +K +YI PL+++ E+ + RL
Sbjct: 34 FRKGKNIMVSVPTAAGKTLIAYSAIYETFKKK--LKSIYIVPLRSLAMEKYEELS-RL-R 89
Query: 761 QLGKEMVEMTGDY--TPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIH 818
+LG + G+Y TPD + D++I T EK D + H +++VGLM++DEIH
Sbjct: 90 ELGMRVKLSIGNYDDTPDFIK--RYDVVILTSEKADSLMH--HDPYMMEEVGLMVIDEIH 145
Query: 819 LLGAE-RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKP 877
++G E RGP LE +++ RY++ +T R I LS ++NA ++A+WL I K
Sbjct: 146 MIGDEYRGPTLETVITTARYVNPET----RIIALSATVSNASEIAEWLNASLI-----KS 196
Query: 878 SVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKP-------VLIFVSSRRQT 930
S RPVPL+V G Y R+ ++ A + + + K VLIFVSSR++
Sbjct: 197 SFRPVPLKV------GILYRNRL-FLDGDARSDVDINLLVKETVDDGGQVLIFVSSRKRA 249
Query: 931 RLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDR 990
A +L Q P L + ED + V D L + L G+ HHAGL+++ R
Sbjct: 250 EDMAKNLSQLF----DPINDLKVSSED-----ANVYDDLLNEMLPHGVSFHHAGLSNEQR 300
Query: 991 SLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPIT-----DI 1045
S +E+ F + K++V+V T TLA GVNLPA LVI+K RY D IT ++
Sbjct: 301 SFIEKAFRHRKLKVIVATPTLAAGVNLPARLVIVK-------DVTRYGDLGITYLSNMEV 353
Query: 1046 LQMMGRAGRPQYDQHGKAVILVHEPKK-SFYKKFLY-EPFPVESSLRDQLHDHFN--AEI 1101
QM+GRAGRP YDQ+G +I K+++ EP PV+S + FN A I
Sbjct: 354 KQMIGRAGRPGYDQYGIGIIYAASANSYQVVKEYISEEPEPVDSYIGKPEKVRFNTLAAI 413
Query: 1102 VSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSG 1161
G + + + T+ YY A+ + + + + L+++G
Sbjct: 414 AMGLATSQVEMEEFYRSTF----------YY------AQNGEDEIPNRINESIKFLKENG 457
Query: 1162 CVKMTEDTVEPTMLGTIASQYYL----SYVTVSMFGSNIGPDTSL 1202
+K +D++ T G + S Y+ + + F N DT+L
Sbjct: 458 FIK-EKDSLRATEFGKMISNLYIDPESAIILKKYFDDNDDIDTAL 501
Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 105/378 (27%), Positives = 167/378 (44%), Gaps = 60/378 (15%)
Query: 9 RIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA-----ARN 63
RI+ LSAT+ N E+A++L + SS+RP+PL +GI N AR+
Sbjct: 171 RIIALSATVSNASEIAEWLNAS------LIKSSFRPVPLK---VGILYRNRLFLDGDARS 221
Query: 64 ELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLS 123
++ + K+ VD G Q ++FV SRK A+ L L DL+V + D +
Sbjct: 222 DVDINLLVKETVD---DGGQVLIFVSSRKRAEDMAKNLSQLFDPINDLKVSSEDANVYDD 278
Query: 124 LIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVN 183
L+ E+ V HHAG+ R E+ F LKV+V T TLA GVN
Sbjct: 279 LLN------------EMLPHGVSFHHAGLSNEQRSFIEKAFRHRKLKVIVATPTLAAGVN 326
Query: 184 LPAHTVVIKGTQLY-DPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLRL 242
LPA V++K Y D ++ + + GRAGRP +D+ G GII + ++
Sbjct: 327 LPARLVIVKDVTRYGDLGITYLSNMEVKQMIGRAGRPGYDQYGIGIIYAASANSYQVVKE 386
Query: 243 LTSQ--LPIESQFISSLKDNLN--AEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGI 298
S+ P++S K N A +A+G T+ E + T+ +
Sbjct: 387 YISEEPEPVDSYIGKPEKVRFNTLAAIAMGLATSQVEMEEFYRSTFYYAQN--------- 437
Query: 299 GWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSV 358
G DE+ + S+K K F ++ + TE G++ S+ YI S
Sbjct: 438 GEDEIPNRINESIKF-------------LKENGFIKEKDSLRATEFGKMISNLYIDPESA 484
Query: 359 ETYNEMLRRHMNDSEVIE 376
+L+++ +D++ I+
Sbjct: 485 ----IILKKYFDDNDDID 498
>sp|Q9V0A9|HELS_PYRAB Putative ski2-type helicase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=PYRAB08810 PE=3 SV=1
Length = 715
Score = 191 bits (486), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 162/504 (32%), Positives = 255/504 (50%), Gaps = 60/504 (11%)
Query: 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764
N+L+ PT SGKT+ AE+A+ + + K VYI PLKA+ E+ ++KD +LG
Sbjct: 40 ENLLVAIPTASGKTLIAEIAIANKL-LEEGGKAVYIVPLKALAEEKFREFKD--WERLGL 96
Query: 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E 823
++ TGDY L DIII+T EK+D + R H ++++ V ++++DEIHL+G+ +
Sbjct: 97 KVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLR--HGSSWIRDVKMLVIDEIHLIGSRD 154
Query: 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVP 883
RG LE I+++M RA + IGLS + N +LA+WL I + RPV
Sbjct: 155 RGATLEFIITQM------LGRA-QIIGLSATIGNPEELAEWLNAKLI-----RSDWRPVK 202
Query: 884 LE--VHIQGYPGKFY----CPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDL 937
L V QG+ F+ R NS + Y A+ K L+FV+ RR+ TAL+L
Sbjct: 203 LRKGVFYQGFV--FWEDGGSERYNSWEELVYDAV---KKGKGALVFVNMRRKAEKTALEL 257
Query: 938 IQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELF 997
+ + R+ L E + + T++ L + L G+ HHAGL +R LVE+ F
Sbjct: 258 AK-KVKNYLDRKELRELRELAESLEENPTNEKLAKALLSGVAFHHAGLGRDERVLVEDNF 316
Query: 998 ANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDF-----PITDILQMMGRA 1052
I+V+V T TL+ G+N PA VII+ T RY +F P+ ++ QMMGRA
Sbjct: 317 RKGLIKVVVATPTLSAGINTPAFRVIIR-------DTWRYSEFGMERIPVLEVQQMMGRA 369
Query: 1053 GRPQYDQHGKAVIL--VHEPKKSFYKKFLYEPFPVESSLRDQ--LHDHFNAEIVSGTIFH 1108
GRP+YD+ G+A+I+ EP +P + S L ++ L A I +
Sbjct: 370 GRPRYDEVGEAIIVSTTEEPSLVIDHYIKGKPEKLFSQLSNESILRSQILALIATFGYSE 429
Query: 1109 KEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED 1168
++ +L T+ + +P Y LE E + + L++N F ++ ED
Sbjct: 430 FKEIYDFLERTF-YAHQGKDP--YMLE----EKIRRIIYFLLENEFIEV-------TLED 475
Query: 1169 TVEPTMLGTIASQYYLSYVTVSMF 1192
++P LG ++ Y+ +T +F
Sbjct: 476 EIKPLPLGVRTTKLYIDPMTAKIF 499
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/289 (29%), Positives = 143/289 (49%), Gaps = 27/289 (9%)
Query: 9 RIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQ--YIGIS--EPNFAARNE 64
+I+GLSAT+ N E+A++L S +RP+ L + Y G E + R
Sbjct: 171 QIIGLSATIGNPEELAEWLNAK------LIRSDWRPVKLRKGVFYQGFVFWEDGGSERYN 224
Query: 65 LLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSL 124
E+ Y D++++G A+VFV+ R+ KTA +L + Y D + SL
Sbjct: 225 SWEELVY----DAVKKGKGALVFVNMRRKAEKTALELAKKVKNYLDRKELRELRELAESL 280
Query: 125 IKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNL 184
+ + K L+ V HHAG+ R +R L E F +GL+KV+V T TL+ G+N
Sbjct: 281 EENPTNEKLAKALLS----GVAFHHAGLGRDERVLVEDNFRKGLIKVVVATPTLSAGINT 336
Query: 185 PAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIIITSHDK----LA 237
PA V+I+ T Y G + +L++ GRAGRP++D GE II+++ ++ +
Sbjct: 337 PAFRVIIRDTWRYS--EFGMERIPVLEVQQMMGRAGRPRYDEVGEAIIVSTTEEPSLVID 394
Query: 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLS 286
+Y++ +L + S L+ + A +A + KE +L T+ +
Sbjct: 395 HYIKGKPEKLFSQLSNESILRSQILALIATFGYSEFKEIYDFLERTFYA 443
>sp|Q9HJX7|HELS_THEAC Putative ski2-type helicase OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=Ta0835 PE=3 SV=1
Length = 674
Score = 191 bits (485), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 159/491 (32%), Positives = 233/491 (47%), Gaps = 62/491 (12%)
Query: 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765
NV++ PT +GKT+ A A+ F Q ++K +YI PL+++ E+ ++ RL LG +
Sbjct: 39 NVVVSVPTAAGKTLIAYSAIYETF--QRNLKSIYIVPLRSLAMEKFSELS-RL-RDLGLK 94
Query: 766 MVEMTGDY--TPDLMALLSADIIISTPEKWDGISRNWHSRNYV-KKVGLMILDEIHLLGA 822
+ GDY +PD + D +I T EK D + H Y+ VGL++LDEIH +G
Sbjct: 95 VKMSIGDYDDSPDFIK--RYDAVILTSEKADSL---LHHDPYILNDVGLLVLDEIHTIGD 149
Query: 823 E-RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRP 881
E RGP LE + S RY++ VR + LS ++NA +LA WL I K RP
Sbjct: 150 ESRGPTLETVASIARYVNPD----VRILALSATVSNAMELASWLDASLI-----KSDFRP 200
Query: 882 VPLEVHIQGYPGKFYCPRMNSMNKPAYAAIC-THSPTKPVLIFVSSRRQTRLTALDLIQF 940
VPL+ I Y + Y I T VL+FVSSR++ TA DL Q
Sbjct: 201 VPLKTGIL-YRDQLYLDGKRRSGVSINQIIRETVEDNGQVLMFVSSRKKAEDTARDLAQI 259
Query: 941 AASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANN 1000
SD + + + V D L + L G+ HHAGL++ R+ +E F
Sbjct: 260 FGSDANIK---------ISSDETNVYDDMLNEILPRGVAFHHAGLSNDQRAFIEREFRAR 310
Query: 1001 KIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQH 1060
+I+V+V T TLA GVNLPA LVI++ + Y+ +I QM+GRAGRP YDQ+
Sbjct: 311 RIKVIVATPTLAAGVNLPARLVIVRDITRWGSDGISYL--TNMEIKQMIGRAGRPGYDQY 368
Query: 1061 GKAVILV-----HEPKKSFYKKFLYEPFPVESSLRDQLHDHFN--AEIVSGTIFHKEDAV 1113
G +I V +E K + +P PV S L ++ FN A I G D +
Sbjct: 369 GIGLIYVSSQSSYEAAKDYLST---DPEPVVSYLGNEAKVRFNTLAAISMGLARSPSDIM 425
Query: 1114 HYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPT 1173
+ T F ++ L + + + LE +G +K + D + T
Sbjct: 426 KFYETTLFF----------------SQNGKDLLEEKISASLKFLEKNGFIKQSPD-LRTT 468
Query: 1174 MLGTIASQYYL 1184
LG + S Y+
Sbjct: 469 QLGKVTSDLYI 479
Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 34/233 (14%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLA-------QQYIGISEPNFA 60
+RI+ LSAT+ N +E+A +L + S +RP+PL Q Y+ +
Sbjct: 170 VRILALSATVSNAMELASWLDAS------LIKSDFRPVPLKTGILYRDQLYLDGKRRSGV 223
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120
+ N+++ E ++ Q ++FV SRK TA+ L ++F +D +
Sbjct: 224 SINQIIRE--------TVEDNGQVLMFVSSRKKAEDTARDLA---------QIFGSDANI 266
Query: 121 QLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
++S + +V L E+ V HHAG+ R ER F +KV+V T TLA
Sbjct: 267 KISSDETNVYDDM---LNEILPRGVAFHHAGLSNDQRAFIEREFRARRIKVIVATPTLAA 323
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGW-RDLGMLDIFGRAGRPQFDRSGEGIIITS 232
GVNLPA V+++ + + ++ + + GRAGRP +D+ G G+I S
Sbjct: 324 GVNLPARLVIVRDITRWGSDGISYLTNMEIKQMIGRAGRPGYDQYGIGLIYVS 376
>sp|Q97VY9|HELS_SULSO Putative ski2-type helicase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=SSO2462 PE=1 SV=1
Length = 708
Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 147/444 (33%), Positives = 224/444 (50%), Gaps = 57/444 (12%)
Query: 675 LGNNIYEALYN--FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ 732
L +N+ + + N NP QT+ N +LL +PTGSGKT+ AE+ ++ F +
Sbjct: 8 LPSNVIDIIKNRGIKKLNPPQTEAVKKGLLDGNRLLLTSPTGSGKTLIAEMGIIS-FLLK 66
Query: 733 SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEK 792
+ K +Y+ PL+A+ E+ +KD +G ++ +GDY D L + DIII+T EK
Sbjct: 67 NGGKAIYVTPLRALTNEKYLTFKD--WESIGFKVAMTSGDYDTDDAWLKNYDIIITTYEK 124
Query: 793 WDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVSRMRYISSQTERAVR--FI 849
D + R H +++ + +LDE+H L ERGP++E S T RA R +
Sbjct: 125 LDSLWR--HRPDWLNEANYFVLDELHYLNDPERGPVVE----------SVTIRAKRRNLL 172
Query: 850 GLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYP---GKFYCP--RMNSMN 904
LS ++N +A WLG + + RPVPL + YP K Y R N+
Sbjct: 173 ALSATISNYKQIAKWLGAEPVA-----TNWRPVPLMEGVM-YPERKKKEYTILFRDNTAR 226
Query: 905 K----PAYAAICTHSPTK--PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDL 958
K A A S +K VL+F +SR+ TAL + + F+ + E+ +
Sbjct: 227 KVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYM-------NFVSLDEKAI 279
Query: 959 QMVLSQVTD---------QNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTS 1009
+L Q+ D + L+ + G+ HHAGL+ R ++EE F KI+V+V T
Sbjct: 280 SEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATP 339
Query: 1010 TLAWGVNLPAHLVIIKGTEYYDGKTKRYVD-FPITDILQMMGRAGRPQYDQHGKAVILVH 1068
TLA GVNLPA VII ++ K Y D P+ + QM GRAGRP +DQ G+++I+V
Sbjct: 340 TLAAGVNLPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQIGESIIVVR 399
Query: 1069 EPK---KSFYKKFLYEPFPVESSL 1089
+ + + F K L + P+ES L
Sbjct: 400 DKEDVDRVFKKYILSDVEPIESKL 423
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/266 (31%), Positives = 132/266 (49%), Gaps = 31/266 (11%)
Query: 10 IVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNE--LLS 67
++ LSAT+ NY ++A++L P +++RP+PL + G+ P + L
Sbjct: 171 LLALSATISNYKQIAKWLGAEP------VATNWRPVPLME---GVMYPERKKKEYTILFR 221
Query: 68 EICYKKV----------VDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNND 117
+ +KV +DSL + Q +VF +SRK TA K+ + E ++
Sbjct: 222 DNTARKVHGDDAIIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDEKAISE 281
Query: 118 THPQLSLIKKDVMKSRNKDLIE-LFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTA 176
QL I++ S K+L++ L V HHAG+ ++ R + E F + +KV+V T
Sbjct: 282 ILKQLDDIEEG--GSDEKELLKSLISKGVAYHHAGLSKALRDIIEESFRKRKIKVIVATP 339
Query: 177 TLAWGVNLPAHTVVIKGTQLYDPKAGGWRD----LGMLDIFGRAGRPQFDRSGEGIIITS 232
TLA GVNLPA TV+I ++ K G+ D + + GRAGRP FD+ GE II+
Sbjct: 340 TLAAGVNLPARTVIIGDIYRFNRKIVGYYDEIPVMEYKQMSGRAGRPGFDQIGESIIVVR 399
Query: 233 HDK---LAYYLRLLTSQLPIESQFIS 255
+ + +L+ PIES+ S
Sbjct: 400 DKEDVDRVFKKYILSDVEPIESKLGS 425
>sp|Q974S1|HELS_SULTO Putative ski2-type helicase OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=STK_05900 PE=3 SV=1
Length = 704
Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 144/463 (31%), Positives = 235/463 (50%), Gaps = 50/463 (10%)
Query: 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748
NP Q++ +L+ +PT SGKT+ AEL M++ ++ K +YI PL+A+
Sbjct: 27 LNPPQSEAIRKGLLDGKRLLVTSPTASGKTLIAELGMINYLLSKGG-KAIYITPLRALTN 85
Query: 749 ERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKK 808
E+ N +KD LG + +GDY D L + DII++T EK D + R H ++ +
Sbjct: 86 EKYNTFKDW--ETLGIKTGMTSGDYDTDDAWLENYDIIVTTYEKLDSLWR--HKAKWLNE 141
Query: 809 VGLMILDEIHLLG-AERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGV 867
V +LDE H L ERGP +E + R + +R + +GLS ++N ++A+WL
Sbjct: 142 VSYFVLDEFHYLNDPERGPTVESVAIRAK------KRGI-VLGLSATISNGKEIANWLN- 193
Query: 868 GEIGLFNFKPSVRPVPLEVHIQGYPGK--FYCPRMNSMNKPAYA--AICTH-----SPTK 918
E+ N+ RPVPL+ I YP K F ++ ++ Y AI + S
Sbjct: 194 AELVATNW----RPVPLKEGII-YPEKKGFVVVYKDNTSRKVYGDDAIIAYTLDIVSKGG 248
Query: 919 PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTD---------QN 969
VL+F SSR+ TA ++Q+ F+ + ++ L + ++ + ++
Sbjct: 249 QVLVFRSSRKLAENTARKIVQYM-------NFVKLEDKKLLEIARKIKEVEDAGSNEKED 301
Query: 970 LRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEY 1029
L + G+ HHAGL+ R ++E F + ++V+V T TLA GVNLPA V+I
Sbjct: 302 LYNLVLRGVAYHHAGLSKGLRDIIESSFRDRILKVIVATPTLAAGVNLPARAVVIGDIYR 361
Query: 1030 YDGKTKRYVDF-PITDILQMMGRAGRPQYDQHGKAVILV---HEPKKSFYKKFLYEPFPV 1085
Y+ K Y+D P+ D QM GRAGRP +D++G+AV++V E +K + + + + P+
Sbjct: 362 YNRKVVGYMDLIPVMDYKQMSGRAGRPGFDENGEAVVVVRNKREAEKVYERYLMSDVEPI 421
Query: 1086 ESSLRDQ--LHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLA 1126
ES L + + + I S E+ + Y+ T L + LA
Sbjct: 422 ESKLGSESAFYSFLISIIASEGEKTTEELMEYVKETLLPKELA 464
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 116/429 (27%), Positives = 189/429 (44%), Gaps = 79/429 (18%)
Query: 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA 60
+ + +R I ++GLSAT+ N E+A +L N E+ +++RP+PL + I + F
Sbjct: 167 IRAKKRGI-VLGLSATISNGKEIANWL--NAEL----VATNWRPVPLKEGIIYPEKKGFV 219
Query: 61 -------ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLV----------- 102
+R + +D + +G Q +VF SRK TA+K+V
Sbjct: 220 VVYKDNTSRKVYGDDAIIAYTLDIVSKGGQVLVFRSSRKLAENTARKIVQYMNFVKLEDK 279
Query: 103 ---DLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159
++AR+ +++E D + +DL L V HHAG+ + R +
Sbjct: 280 KLLEIARKIKEVE---------------DAGSNEKEDLYNLVLRGVAYHHAGLSKGLRDI 324
Query: 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDL-GMLD---IFGR 215
E F + +LKV+V T TLA GVNLPA VVI Y+ K G+ DL ++D + GR
Sbjct: 325 IESSFRDRILKVIVATPTLAAGVNLPARAVVIGDIYRYNRKVVGYMDLIPVMDYKQMSGR 384
Query: 216 AGRPQFDRSGEGIIITSHDKLA--YYLRLLTSQL-PIESQF--ISSLKDNLNAEVALGTV 270
AGRP FD +GE +++ + + A Y R L S + PIES+ S+ L + +A
Sbjct: 385 AGRPGFDENGEAVVVVRNKREAEKVYERYLMSDVEPIESKLGSESAFYSFLISIIASEGE 444
Query: 271 TNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMM 330
+E ++ T L + G+ W L Q +
Sbjct: 445 KTTEELMEYVKETLLPKELAKKYFRSGLDW----------LLQHDI-------------- 480
Query: 331 RFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEV--IEMVSHSSEFENIV 388
F E S T GR S YI + T E L ++ E+ + +++++ + +I
Sbjct: 481 -FAEISDKITLTRFGRRISDLYINPFTAVTIREALEKNEKGCEIAYLHLLAYTPDGPSIG 539
Query: 389 VRDEEQNEL 397
V E++ L
Sbjct: 540 VSRAEEDAL 548
>sp|A8MB76|HELS_CALMQ Putative ski2-type helicase OS=Caldivirga maquilingensis (strain ATCC
700844 / DSMZ 13496 / JCM 10307 / IC-167) GN=Cmaq_0318
PE=3 SV=1
Length = 756
Score = 180 bits (457), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 165/584 (28%), Positives = 277/584 (47%), Gaps = 54/584 (9%)
Query: 665 LDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELA 724
++++ LP+ +L + + P Q + N+L+ + T SGKT+ AE+A
Sbjct: 1 MNIEELPLPSLLRDFLISKRGIRTLYPPQEEAIRAGLLNGENILMVSATASGKTLLAEVA 60
Query: 725 MLH--LFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782
++ L N D K + PLKA+ E++ND+ S+LG + TGDY + L S
Sbjct: 61 AVNNVLVN---DKKSLVAVPLKALAFEKLNDFNT--YSELGIRVAASTGDYNSEDKWLGS 115
Query: 783 ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQ 841
D+II+T EK D + R S ++ VG +I+DEIH + ERGPI+E IV+++R ++
Sbjct: 116 YDVIITTYEKLDSLLRLKPS--WIWNVGQLIIDEIHFINDDERGPIIESIVAKLRMLNLN 173
Query: 842 TERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMN 901
+ IGLS + N +LA+WL + K RPV L +G K +N
Sbjct: 174 PQ----IIGLSATIGNPEELANWLNAKLV-----KSDWRPVSLR---EGVYHKGVVTYVN 221
Query: 902 SMNKPAYA--------AICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDET----PRQ 949
K + T + VL+F SSR+ A L ++ S P +
Sbjct: 222 DGEKRISGQGDSLINLTVDTLNDGGQVLVFSSSRQGAVRIARKLAEYICSSPVRYIDPGE 281
Query: 950 FLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTS 1009
+ EE + S++ + L ++ G+ HHAGL + R ++EE F ++VL T+
Sbjct: 282 AGKLAEEVRETSSSRILAEELTGLIKCGVSFHHAGLELEVRRVIEEGFRRGVLRVLASTT 341
Query: 1010 TLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069
TLA GVNLPA VI+ Y+ +++ P+ + QM GRAGRP D +G+A+I+V
Sbjct: 342 TLAAGVNLPARRVIVNEYRRYE-PGYGFIEIPVMEYKQMAGRAGRPGLDPYGEAIIIVSS 400
Query: 1070 PKKSFY--KKFLYEPFP-VESSLRD--QLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRR 1124
+ Y K++ P V+S+ + L H + + S ++ V + S T+
Sbjct: 401 KDEVDYVIDKYIKSPPEYVKSNFMNPTSLKFHTLSAVASQYAETIDELVKFTSNTF---- 456
Query: 1125 LAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYL 1184
+ G A ++ + R++ ++L D G + D +E T +G + ++ YL
Sbjct: 457 ----AGFQG--KLSAMIQANSVRRMISRIIDELVDYGFIIRNGDKLEATEVGAVVNRMYL 510
Query: 1185 SYVTVSMFG---SNIGPDTSLEVF-LHILSGASEYDELPVRHNE 1224
T +F N+ D L + L ++ + + ++ VR NE
Sbjct: 511 DPDTAHVFIMGLRNLNSDADLNAYSLMLVVKSPKIPKVKVRRNE 554
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 111/421 (26%), Positives = 193/421 (45%), Gaps = 62/421 (14%)
Query: 9 RIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQ--------QYIGISEPNFA 60
+I+GLSAT+ N E+A +L S +RP+ L + Y+ E +
Sbjct: 175 QIIGLSATIGNPEELANWLNAK------LVKSDWRPVSLREGVYHKGVVTYVNDGEKRIS 228
Query: 61 ARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDL----ARRYEDLEVFNN 116
+ + L + VD+L G Q +VF SR+ V+ A+KL + RY D
Sbjct: 229 GQGDSLINLT----VDTLNDGGQVLVFSSSRQGAVRIARKLAEYICSSPVRYID-----P 279
Query: 117 DTHPQLSLIKKDVMKSR--NKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVC 174
+L+ ++ SR ++L L V HHAG+ R + E F G+L+VL
Sbjct: 280 GEAGKLAEEVRETSSSRILAEELTGLIKCGVSFHHAGLELEVRRVIEEGFRRGVLRVLAS 339
Query: 175 TATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIII- 230
T TLA GVNLPA V++ + Y+P G+ ++ +++ + GRAGRP D GE III
Sbjct: 340 TTTLAAGVNLPARRVIVNEYRRYEP-GYGFIEIPVMEYKQMAGRAGRPGLDPYGEAIIIV 398
Query: 231 TSHDKLAYYLRLLTSQLP--IESQFI--SSLKDNLNAEVALGTVTNVKEACAWLGYTYLS 286
+S D++ Y + P ++S F+ +SLK + + VA + E + T+
Sbjct: 399 SSKDEVDYVIDKYIKSPPEYVKSNFMNPTSLKFHTLSAVASQYAETIDELVKFTSNTFAG 458
Query: 287 IRMKLNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGN-FYCTELG 345
+ KL+ + ++ ++ +R +D+ F ++G+ TE+G
Sbjct: 459 FQGKLSAM----------------IQANSVRRMISRIIDELVDYGFIIRNGDKLEATEVG 502
Query: 346 RIASHFYIQYSSVETYNEMLRRHMNDSEV----IEMVSHSSEFENIVVRDEEQNELETLV 401
+ + Y+ + + LR +D+++ + +V S + + VR +NEL+ L
Sbjct: 503 AVVNRMYLDPDTAHVFIMGLRNLNSDADLNAYSLMLVVKSPKIPKVKVR---RNELDELA 559
Query: 402 Q 402
Q
Sbjct: 560 Q 560
>sp|Q3IU46|HELS_NATPD Putative ski2-type helicase OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=NP_0492A PE=3 SV=1
Length = 747
Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 146/516 (28%), Positives = 235/516 (45%), Gaps = 44/516 (8%)
Query: 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRER 750
P Q +++ PT SGKT+ A+LAML + +YI PL+A+ E+
Sbjct: 27 PPQAAAVDAGVADGESLVASVPTASGKTLVAQLAMLSAIDRGG--TALYIVPLRALASEK 84
Query: 751 MNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVG 810
++ + G + TG Y L DII++T EK D + RN ++ +
Sbjct: 85 REEFA--AFEEYGLSVGVTTGSYEDTGEWLADKDIIVATSEKVDSLVRN--GAPWIDDLD 140
Query: 811 LMILDEIHLLGAE-RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGE 869
++ DE+HL+ E RGP LEV ++++R ++ ++ + LS + NAG++A+WL
Sbjct: 141 CVVADEVHLVDDEHRGPTLEVTLAKLRRVNPN----LQVVALSATVGNAGEMAEWLDAEL 196
Query: 870 IGLFNFKPSVRPVPLEVHIQ-------GYPGKFYCPRMNSMNKPAYAAIC-THSPTKPVL 921
+ S RP+ L + G + P + KP A + T L
Sbjct: 197 V-----DSSWRPIELRKGVHYGQALHFGDGTQQELP-VQRTEKPTEAVVRETLDEGGSTL 250
Query: 922 IFVSSRRQTRLTALDLIQFAAS--DETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIG 979
+FV+SRR A L + D R L E+++ V T +L ++ G
Sbjct: 251 VFVNSRRNAEGAAKRLAKTTVDGLDADERAALSSLAEEIRAVSDTETSDDLADCVEQGAA 310
Query: 980 LHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVD 1039
HHAG + + RSLVE+ F + I+ + T TLA GVN PA V+++ Y G
Sbjct: 311 FHHAGCSSEHRSLVEDAFRDRLIKTICATPTLAAGVNTPARRVVVRDWRRYSGDAGGMQP 370
Query: 1040 FPITDILQMMGRAGRPQYDQHGKAVILV--HEPKKSFYKKFLY-EPFPVESSLRDQ--LH 1094
+ ++ QMMGRAGRP D +G+AV+L H+ ++++ +P PVES L + +
Sbjct: 371 LSVLEVHQMMGRAGRPGRDPYGEAVLLADSHDELDELLDRYVWADPEPVESKLAREPSMR 430
Query: 1095 DHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTF 1154
H A + SG + + +L T Y + +G L R+V T
Sbjct: 431 THLLATVASGFADSRSALLSFLDRT-----------LYATQYRHGDG-EDNLERVVDTTL 478
Query: 1155 EDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVS 1190
LE +G + D +E T LG S+ YL ++ +
Sbjct: 479 SYLETNGFIDRDGDAIEATDLGHTVSRLYLDPMSAA 514
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 93/326 (28%), Positives = 152/326 (46%), Gaps = 42/326 (12%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQY---------IGISEPN 58
+++V LSAT+ N E+A++L DSS+RPI L + G +
Sbjct: 173 LQVVALSATVGNAGEMAEWLDAE------LVDSSWRPIELRKGVHYGQALHFGDGTQQEL 226
Query: 59 FAARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDT 118
R E +E ++ +D +G +VFV+SR++ A++L ++ + D
Sbjct: 227 PVQRTEKPTEAVVRETLD---EGGSTLVFVNSRRNAEGAAKRLAKTT-----VDGLDADE 278
Query: 119 HPQLSLIKKDVMK----SRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVC 174
LS + +++ + DL + HHAG R L E F + L+K +
Sbjct: 279 RAALSSLAEEIRAVSDTETSDDLADCVEQGAAFHHAGCSSEHRSLVEDAFRDRLIKTICA 338
Query: 175 TATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIIIT 231
T TLA GVN PA VV++ + Y AGG + L +L++ GRAGRP D GE +++
Sbjct: 339 TPTLAAGVNTPARRVVVRDWRRYSGDAGGMQPLSVLEVHQMMGRAGRPGRDPYGEAVLLA 398
Query: 232 -SHDKLAYYLR--LLTSQLPIESQFIS--SLKDNLNAEVALGTVTNVKEACAWLGYTYLS 286
SHD+L L + P+ES+ S++ +L A VA G + ++L T +
Sbjct: 399 DSHDELDELLDRYVWADPEPVESKLAREPSMRTHLLATVASGFADSRSALLSFLDRTLYA 458
Query: 287 IRMKLNPLAYGIGWD--EVIADPSLS 310
+ + +G G D E + D +LS
Sbjct: 459 TQYR-----HGDGEDNLERVVDTTLS 479
>sp|Q4JC00|HELS_SULAC Putative ski2-type helicase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=Saci_0263 PE=3 SV=1
Length = 705
Score = 177 bits (448), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 142/444 (31%), Positives = 220/444 (49%), Gaps = 36/444 (8%)
Query: 663 ELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAE 722
E + ++ LPV + +I ++ NP QT+ D +L+ PT SGKT+ AE
Sbjct: 2 EEITVEDLPVDSKVKDIIKS-RGIKKLNPPQTEAVKKGLIEDKRLLITTPTASGKTLMAE 60
Query: 723 LAML-HLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781
L M+ HL N K +Y+ PL+A+ E+ + +KD +LG ++ +GDY D L
Sbjct: 61 LGMISHLLNKGG--KAIYVTPLRALTSEKYSTFKDW--EKLGFKVGVTSGDYDTDDPWLR 116
Query: 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVSRMRYISS 840
+ DII++T EK D + R HS ++K + +LDE H + +RGP++E + R +
Sbjct: 117 NFDIIVTTYEKLDSLWR--HSAEWLKDIDYFVLDEFHYMNDGDRGPVVEGVAVRAK---- 170
Query: 841 QTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLE---VHIQGYPGKFYC 897
R + LS + NA D+A WL +I N+ RPVPL+ ++ +G G
Sbjct: 171 ---RQGTILALSATIGNAKDVAKWLN-ADIVATNW----RPVPLKEGVMYSEGKKGHIIL 222
Query: 898 PRMNSMNK-----PAYA-AICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFL 951
+ NK P A + S V++F SSR+ TA+ + Q+ + + L
Sbjct: 223 YSDGTTNKLKGDDPIIAYTLDILSKGGQVIVFRSSRKYAETTAMKISQYMNFVKLDDKKL 282
Query: 952 GMPEEDLQMVLSQVTDQN--LRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTS 1009
E ++ V +++ L + G+ HHAGL+ R ++E F I+V+ T
Sbjct: 283 LETAERIKEVEDAGSNEKEVLYNLIVRGVAFHHAGLSKGLRDIIEASFRERIIKVITATP 342
Query: 1010 TLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPIT-DILQMMGRAGRPQYDQHGKAVILVH 1068
TLA GVNLPA V+I ++ K + + T + QM GRAGRP YD HG+A+ILV
Sbjct: 343 TLAAGVNLPARAVVIGDIYRFNRKIVGFTEMISTMEYRQMSGRAGRPGYDNHGEAIILVR 402
Query: 1069 ---EPKKSFYKKFLYEPFPVESSL 1089
E K K + P+ES L
Sbjct: 403 SKVEVDKVIDKYLHSDIEPIESKL 426
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 120/244 (49%), Gaps = 29/244 (11%)
Query: 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEP------ 57
+R I+ LSAT+ N +VA++L + +++RP+PL ++ + SE
Sbjct: 169 AKRQGTILALSATIGNAKDVAKWLNAD------IVATNWRPVPL-KEGVMYSEGKKGHII 221
Query: 58 --NFAARNELLSE---ICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLAR--RYED 110
+ N+L + I Y +D L +G Q +VF SRK TA K+ + +D
Sbjct: 222 LYSDGTTNKLKGDDPIIAY--TLDILSKGGQVIVFRSSRKYAETTAMKISQYMNFVKLDD 279
Query: 111 LEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLK 170
++ +T ++ ++ D + + L L V HHAG+ + R + E F E ++K
Sbjct: 280 KKLL--ETAERIKEVE-DAGSNEKEVLYNLIVRGVAFHHAGLSKGLRDIIEASFRERIIK 336
Query: 171 VLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRD----LGMLDIFGRAGRPQFDRSGE 226
V+ T TLA GVNLPA VVI ++ K G+ + + + GRAGRP +D GE
Sbjct: 337 VITATPTLAAGVNLPARAVVIGDIYRFNRKIVGFTEMISTMEYRQMSGRAGRPGYDNHGE 396
Query: 227 GIII 230
II+
Sbjct: 397 AIIL 400
>sp|Q5UYM9|HELS_HALMA Putative ski2-type helicase OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rrnAC2876
PE=3 SV=1
Length = 799
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 145/517 (28%), Positives = 244/517 (47%), Gaps = 49/517 (9%)
Query: 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRER 750
P Q + N++ PT SGKT+ AELAML + K +YI PL+A+ E+
Sbjct: 27 PPQAEAVEAGVTEGENLVASIPTASGKTLIAELAMLS--SVARGGKALYIVPLRALASEK 84
Query: 751 MNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVG 810
D+++ Q G ++ TG+Y + L DI+++T EK D + RN +++ +
Sbjct: 85 QADFEE--FEQYGLDIGVSTGNYESEGGWLADKDIVVATSEKVDSLVRN--DAPWIEDLT 140
Query: 811 LMILDEIHLLG-AERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGE 869
++ DE+HL+ ERGP LEV ++++R ++ ++ + LS + NA LA WL G
Sbjct: 141 CVVTDEVHLVDDGERGPTLEVTLAKLRRLNPD----LQTVALSATIGNAEALATWLDAGL 196
Query: 870 IGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM------NKPAYAAIC--THSPTKPVL 921
+ RP+ L+ + Y + + N+ AAI T L
Sbjct: 197 V-----DSDWRPIDLQKGVH-YGQALHLEDGSQQRLSVQNNEKQTAAIVRDTLEDDGSTL 250
Query: 922 IFVSSRRQTRLTA---LDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGI 978
+FV+SRR A + ++ S E Q + EE ++ V T +L + G
Sbjct: 251 VFVNSRRNAEAAAGRLANTVRPHLSTEERDQLADIAEE-IRDVSDTETSDDLADAVADGA 309
Query: 979 GLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYV 1038
HHAGL+ R LVE+ F + ++V+ T TLA GVN P+ V+++ YDG
Sbjct: 310 AFHHAGLSRGHRELVEDAFRDRLVKVVCATPTLAAGVNTPSRRVVVRDWRRYDGSAGGMA 369
Query: 1039 DFPITDILQMMGRAGRPQYDQHGKAVILV--HEPKKSFYKKFLY-EPFPVESSLRDQ--L 1093
+ ++ QMMGRAGRP D +G+AV++ H+ ++++++ +P PV S L + L
Sbjct: 370 PLSVLEVHQMMGRAGRPGLDPYGEAVLIASSHDEVDELFERYVWADPEPVRSKLAAEPAL 429
Query: 1094 HDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNT 1153
H A + SG ++ + +L T Y D S L R+V +
Sbjct: 430 RTHILATVASGFARSRKGLLEFLEQTL----------YASQTDD-----SGQLERVVDDV 474
Query: 1154 FEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVS 1190
L+ + +++ ++ T LG S+ YL ++ +
Sbjct: 475 LTYLQRNDFLEIEAGELDATSLGHTVSRLYLDPMSAA 511
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 23/242 (9%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQ-----QYIGI---SEPNF 59
++ V LSAT+ N +A +L + GL DS +RPI L + Q + + S+
Sbjct: 173 LQTVALSATIGNAEALATWL----DAGLV--DSDWRPIDLQKGVHYGQALHLEDGSQQRL 226
Query: 60 AARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTH 119
+ +N + V D+L +VFV+SR++ A +L + R + L D
Sbjct: 227 SVQNN--EKQTAAIVRDTLEDDGSTLVFVNSRRNAEAAAGRLANTVRPH--LSTEERDQL 282
Query: 120 PQLSLIKKDVMKSR-NKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATL 178
++ +DV + + DL + HHAG+ R R L E F + L+KV+ T TL
Sbjct: 283 ADIAEEIRDVSDTETSDDLADAVADGAAFHHAGLSRGHRELVEDAFRDRLVKVVCATPTL 342
Query: 179 AWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIII-TSHD 234
A GVN P+ VV++ + YD AGG L +L++ GRAGRP D GE ++I +SHD
Sbjct: 343 AAGVNTPSRRVVVRDWRRYDGSAGGMAPLSVLEVHQMMGRAGRPGLDPYGEAVLIASSHD 402
Query: 235 KL 236
++
Sbjct: 403 EV 404
>sp|A3MSA1|HELS_PYRCJ Putative ski2-type helicase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=Pcal_0078 PE=3 SV=1
Length = 708
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 154/507 (30%), Positives = 238/507 (46%), Gaps = 43/507 (8%)
Query: 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRER 750
P Q + +VLL T SGK++ AE+A + + M +Y PLKA+ E+
Sbjct: 26 PPQVEAVRAGIFDGRSVLLCTATASGKSLLAEVAAVKA-GLEGRM-ALYAVPLKALAYEK 83
Query: 751 MNDWKD-RLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKV 809
+ + R + ++G TGD+ D L D+++ T EK D + R H N++ V
Sbjct: 84 LVHFSYYRGLVKVGVS----TGDFDSDDRRLHEFDVVVVTYEKLDSLLR--HRPNWLGLV 137
Query: 810 GLMILDEIHLLG-AERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVG 868
G++++DEIH LG RGP+LE IV+++R++ +T+ FIGLS + NAG++A WLG
Sbjct: 138 GVVVVDEIHYLGDPRRGPVLESIVAKLRHLGLKTQ----FIGLSATVGNAGEVAAWLGAR 193
Query: 869 EIGLFNFKPSVRPVPLEVHI-QGYPGKFYCPRMNSMNKPAYA----AICTHSPTKPVLIF 923
+ + S RPVPL + G +F M +N P A A+ + L+F
Sbjct: 194 LV-----ESSWRPVPLREGVYHGGVIRFSDGSMQRVNAPGDAEVALAVDAVAGGGQALVF 248
Query: 924 VSSRRQT-RLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHH 982
+SR T RL A+ PR + EE L+ S++ + L + G+ H+
Sbjct: 249 TNSRSSTVRLAKAVAKAMEAAGLVPRGAKALAEEVLKASSSKIIGRELADLVARGVAFHN 308
Query: 983 AGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPI 1042
AGL + R LVE+ F ++V+V T+TLA GVNLPA V++ E +D R + P+
Sbjct: 309 AGLELEVRRLVEDGFRRGLLKVVVSTTTLAAGVNLPARRVVVADYERFDPALGRE-EIPV 367
Query: 1043 TDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESS-----LRDQLHDHF 1097
+ QM GRAGRP D +G+AV++ ++ Y Y VE L H
Sbjct: 368 LEYRQMAGRAGRPGLDPYGEAVLVARSKGEAEYLMERYVRGQVEGVRSHILAEPNLRAHV 427
Query: 1098 NAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDL 1157
+ G +D V + S T G + S L + E+L
Sbjct: 428 LGAVGGGYAKSLDDLVDFFSNT------------LGAAQMKTSLKLSILRSKIGGVVEEL 475
Query: 1158 EDSGCVKMTEDTVEPTMLGTIASQYYL 1184
+ G ++ D V T LG ++ YL
Sbjct: 476 VEWGFLERDGDFVYATELGRQVARLYL 502
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 105/370 (28%), Positives = 168/370 (45%), Gaps = 42/370 (11%)
Query: 11 VGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA----ARNELL 66
+GLSAT+ N EVA +L G +SS+RP+PL + F+ R
Sbjct: 174 IGLSATVGNAGEVAAWL------GARLVESSWRPVPLREGVYHGGVIRFSDGSMQRVNAP 227
Query: 67 SEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLS-LI 125
+ VD++ G QA+VF +SR TV+ A+ + A+ E + ++
Sbjct: 228 GDAEVALAVDAVAGGGQALVFTNSRSSTVRLAKAV---AKAMEAAGLVPRGAKALAEEVL 284
Query: 126 KKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLP 185
K K ++L +L V H+AG+ R L E F GLLKV+V T TLA GVNLP
Sbjct: 285 KASSSKIIGRELADLVARGVAFHNAGLELEVRRLVEDGFRRGLLKVVVSTTTLAAGVNLP 344
Query: 186 AHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLAYYL-- 240
A VV+ + +DP A G ++ +L+ + GRAGRP D GE +++ A YL
Sbjct: 345 ARRVVVADYERFDP-ALGREEIPVLEYRQMAGRAGRPGLDPYGEAVLVARSKGEAEYLME 403
Query: 241 RLLTSQLP-IESQFIS--SLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYG 297
R + Q+ + S ++ +L+ ++ V G ++ + + T + +MK
Sbjct: 404 RYVRGQVEGVRSHILAEPNLRAHVLGAVGGGYAKSLDDLVDFFSNTLGAAQMK------- 456
Query: 298 IGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNF-YCTELGRIASHFYIQYS 356
SLK L + +++ F E+ G+F Y TELGR + Y+
Sbjct: 457 -----------TSLKLSILRSKIGGVVEELVEWGFLERDGDFVYATELGRQVARLYLDPE 505
Query: 357 SVETYNEMLR 366
Y +++
Sbjct: 506 VAAGYIRLIK 515
>sp|Q9HMV6|HELS_HALSA Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=VNG_2368G PE=3 SV=1
Length = 783
Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 131/453 (28%), Positives = 209/453 (46%), Gaps = 35/453 (7%)
Query: 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-------QSDMKVVYIAPL 743
P Q + N++ PT SGKT+ A+LAML D +YI PL
Sbjct: 27 PPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPL 86
Query: 744 KAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSR 803
+A+ E+ +++ + G + TG+Y D L DI+++T EK D + RN
Sbjct: 87 RALAGEKAQEFE--AFERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDSLVRN--GA 142
Query: 804 NYVKKVGLMILDEIHLLGAE-RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLA 862
++ + ++ DE+HL+ + RGP LEV ++++R Q ++ + LS + NAG+LA
Sbjct: 143 GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLR----QQVADLQVVALSATVGNAGELA 198
Query: 863 DWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCP------RMNSMNKPAYAAICTHSP 916
WL E+ RP+ L + Y + S ++ A T +
Sbjct: 199 AWLDA-EL----VDSDWRPIELRTGVHYGQSLHYDDGTQAELSVGSGSQTAAVVADTLAD 253
Query: 917 TKPVLIFVSSRRQTRLTALDLIQFAAS--DETPRQFLGMPEEDLQMVLSQVTDQNLRQTL 974
L+FV+SRR +A L + R+ L +++ V T L +
Sbjct: 254 DGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEIRGVSDTETSDELADAV 313
Query: 975 QFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKT 1034
G HHAGL + R LVEE F + ++ + T TLA GVN PA V+++ + YDG
Sbjct: 314 ASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGTA 373
Query: 1035 KRYVDFPITDILQMMGRAGRPQYDQHGKAVILV--HEPKKSFYKKFLY-EPFPVESSLRD 1091
+ ++ QM GRAGRP D +G+AV+L H+ + + +++Y +P PV S L
Sbjct: 374 GGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYVYADPEPVRSKLAA 433
Query: 1092 Q--LHDHFNAEIVSGTIFHKEDAVHYLSWTYLF 1122
+ L H A I +G ED +H L+
Sbjct: 434 EPALRTHVLAAIATG-FTTTEDGLHEFLGGTLY 465
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 166/379 (43%), Gaps = 42/379 (11%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQ-----QYIGISEPNFAAR 62
+++V LSAT+ N E+A +L DS +RPI L Q + + A
Sbjct: 182 LQVVALSATVGNAGELAAWLDAE------LVDSDWRPIELRTGVHYGQSLHYDDGTQAEL 235
Query: 63 NELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQL 122
+ V D+L +VFV+SR++ +A++L D+ L + +
Sbjct: 236 SVGSGSQTAAVVADTLADDGSTLVFVNSRRNAEASARRLADVTGNA--LSSAERERLADI 293
Query: 123 SLIKKDVMKSRNKD-LIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWG 181
+ + V + D L + HHAG+ R R L E F + L+K + T TLA G
Sbjct: 294 AAEIRGVSDTETSDELADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAG 353
Query: 182 VNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIIIT-SHDKLA 237
VN PA VV++ Q YD AGG + L +L++ FGRAGRP D GE +++ SHD+L
Sbjct: 354 VNTPARRVVVRDWQRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELE 413
Query: 238 --YYLRLLTSQLPIESQFIS--SLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNP 293
+ + P+ S+ + +L+ ++ A +A G T +LG T
Sbjct: 414 ELFDRYVYADPEPVRSKLAAEPALRTHVLAAIATGFTTTEDGLHEFLGGTL--------- 464
Query: 294 LAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYI 353
Y D+ + + R++ D R LD+ + D + T G++ S Y+
Sbjct: 465 --YATQTDD-------TGRLRSVTGDVLRYLDRNGFVERDGAA--LRATATGQLVSRLYV 513
Query: 354 QYSSVETYNEMLRRHMNDS 372
S T + LR D+
Sbjct: 514 DPMSAATIIDGLRDAARDA 532
>sp|B0R7Q2|HELS_HALS3 Putative ski2-type helicase OS=Halobacterium salinarum (strain ATCC
29341 / DSM 671 / R1) GN=OE_4325F PE=3 SV=1
Length = 783
Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 131/453 (28%), Positives = 209/453 (46%), Gaps = 35/453 (7%)
Query: 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-------QSDMKVVYIAPL 743
P Q + N++ PT SGKT+ A+LAML D +YI PL
Sbjct: 27 PPQAEAVERGVTEGANLVASVPTASGKTLIAQLAMLSAIAEGGDSPTFSGDGTALYIVPL 86
Query: 744 KAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSR 803
+A+ E+ +++ + G + TG+Y D L DI+++T EK D + RN
Sbjct: 87 RALAGEKAQEFE--AFERFGLSVGVSTGNYERDGARLADNDIVVATSEKVDSLVRN--GA 142
Query: 804 NYVKKVGLMILDEIHLLGAE-RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLA 862
++ + ++ DE+HL+ + RGP LEV ++++R Q ++ + LS + NAG+LA
Sbjct: 143 GWIDDLSCVVADEVHLVDDDHRGPTLEVTLAKLR----QQVADLQVVALSATVGNAGELA 198
Query: 863 DWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCP------RMNSMNKPAYAAICTHSP 916
WL E+ RP+ L + Y + S ++ A T +
Sbjct: 199 AWLDA-EL----VDSDWRPIELRTGVHYGQSLHYDDGTQAELSVGSGSQTAAVVADTLAD 253
Query: 917 TKPVLIFVSSRRQTRLTALDLIQFAAS--DETPRQFLGMPEEDLQMVLSQVTDQNLRQTL 974
L+FV+SRR +A L + R+ L +++ V T L +
Sbjct: 254 DGSTLVFVNSRRNAEASARRLADVTGNALSSAERERLADIAAEIRGVSDTETSDELADAV 313
Query: 975 QFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKT 1034
G HHAGL + R LVEE F + ++ + T TLA GVN PA V+++ + YDG
Sbjct: 314 ASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAGVNTPARRVVVRDWQRYDGTA 373
Query: 1035 KRYVDFPITDILQMMGRAGRPQYDQHGKAVILV--HEPKKSFYKKFLY-EPFPVESSLRD 1091
+ ++ QM GRAGRP D +G+AV+L H+ + + +++Y +P PV S L
Sbjct: 374 GGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELEELFDRYVYADPEPVRSKLAA 433
Query: 1092 Q--LHDHFNAEIVSGTIFHKEDAVHYLSWTYLF 1122
+ L H A I +G ED +H L+
Sbjct: 434 EPALRTHVLAAIATG-FTTTEDGLHEFLGGTLY 465
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 166/379 (43%), Gaps = 42/379 (11%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQ-----QYIGISEPNFAAR 62
+++V LSAT+ N E+A +L DS +RPI L Q + + A
Sbjct: 182 LQVVALSATVGNAGELAAWLDAE------LVDSDWRPIELRTGVHYGQSLHYDDGTQAEL 235
Query: 63 NELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQL 122
+ V D+L +VFV+SR++ +A++L D+ L + +
Sbjct: 236 SVGSGSQTAAVVADTLADDGSTLVFVNSRRNAEASARRLADVTGNA--LSSAERERLADI 293
Query: 123 SLIKKDVMKSRNKD-LIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWG 181
+ + V + D L + HHAG+ R R L E F + L+K + T TLA G
Sbjct: 294 AAEIRGVSDTETSDELADAVASGAAFHHAGLAREHRELVEEAFRDRLVKAVSATPTLAAG 353
Query: 182 VNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIIIT-SHDKLA 237
VN PA VV++ Q YD AGG + L +L++ FGRAGRP D GE +++ SHD+L
Sbjct: 354 VNTPARRVVVRDWQRYDGTAGGMQPLDVLEVHQMFGRAGRPGLDPYGEAVLLANSHDELE 413
Query: 238 --YYLRLLTSQLPIESQFIS--SLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNP 293
+ + P+ S+ + +L+ ++ A +A G T +LG T
Sbjct: 414 ELFDRYVYADPEPVRSKLAAEPALRTHVLAAIATGFTTTEDGLHEFLGGTL--------- 464
Query: 294 LAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYI 353
Y D+ + + R++ D R LD+ + D + T G++ S Y+
Sbjct: 465 --YATQTDD-------TGRLRSVTGDVLRYLDRNGFVERDGAA--LRATATGQLVSRLYV 513
Query: 354 QYSSVETYNEMLRRHMNDS 372
S T + LR D+
Sbjct: 514 DPMSAATIIDGLRDAARDA 532
>sp|Q8TL39|HELS_METAC Putative ski2-type helicase OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=MA_3203 PE=3
SV=1
Length = 730
Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 148/528 (28%), Positives = 249/528 (47%), Gaps = 63/528 (11%)
Query: 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRER 750
P Q + N+L PT SGKT+ AELAML + + K +YI PL+A+ E+
Sbjct: 26 PPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLK--SVLAGGKALYIVPLRALASEK 83
Query: 751 MNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVG 810
++D S+LG + TGDY L DII++T EK D + RN + +++++
Sbjct: 84 FRRFQD--FSELGIRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLRNETA--WMQEIS 139
Query: 811 LMILDEIHLL-GAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGE 869
++++DE+HL+ A+RGP LEV ++++R ++ + + LS + NA +LA WL E
Sbjct: 140 VVVVDEVHLIDSADRGPTLEVTLAKLRKMNP----FCQILALSATVGNADELAAWLDA-E 194
Query: 870 IGLFNFKPSVRPVPLEVHIQG--YPGKFYCPRMNSM------NKPAYAAICTHSPTKPVL 921
+ L ++P+ ++G + G F+C + ++ + T L
Sbjct: 195 LVLSEWRPTD-------LMEGVFFDGTFFCKDKEKLIEQPTKDEAINLVLDTLREGGQCL 247
Query: 922 IFVSSRRQT---RLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGI 978
+F SSR+ A ++ S E + G+ +E L+ + T L ++ G
Sbjct: 248 VFESSRKNCMGFAKKATSAVKKTLSAEDKEKLAGIADEILENSETD-TASVLASCVRAGT 306
Query: 979 GLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYV 1038
HHAGL R LVE F ++++ T TLA G+NLPA VII+ Y +
Sbjct: 307 AFHHAGLTSPLRELVETGFREGYVKLISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQ- 365
Query: 1039 DFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYK-KFLYEPFPVESSLRD------ 1091
P+ + QM GRAGRP+ D +G+AV+L KS+ + FL+E + +E+ D
Sbjct: 366 PIPVLEYKQMAGRAGRPRLDPYGEAVLLA----KSYEELLFLFEKY-IEAGAEDIWSKLG 420
Query: 1092 ---QLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSR 1148
L H + I +G KE+ + +L T+ A + +G LS
Sbjct: 421 TENALRTHVLSTISNGFARTKEELMDFLEATF----FAYQYSNFG------------LSV 464
Query: 1149 LVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNI 1196
+V L G ++ D + TM G + S+ Y+ ++ ++ +
Sbjct: 465 VVDECLNFLRQEGMLEQDSDALISTMFGKLVSRLYIDPLSAALIAKGL 512
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 124/243 (51%), Gaps = 26/243 (10%)
Query: 9 RIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSE 68
+I+ LSAT+ N E+A +L + E+ L S +RP L + + F E L E
Sbjct: 173 QILALSATVGNADELAAWL--DAELVL----SEWRPTDLMEG-VFFDGTFFCKDKEKLIE 225
Query: 69 ICYKK-----VVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLS 123
K V+D+LR+G Q +VF SRK+ + A+K ++ + + +L+
Sbjct: 226 QPTKDEAINLVLDTLREGGQCLVFESSRKNCMGFAKKATSAVKK-----TLSAEDKEKLA 280
Query: 124 LIKKDVMKSRNKDLIELFGLAV----GVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLA 179
I +++++ D + V HHAG+ R L E F EG +K++ T TLA
Sbjct: 281 GIADEILENSETDTASVLASCVRAGTAFHHAGLTSPLRELVETGFREGYVKLISSTPTLA 340
Query: 180 WGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIIT-SHDK 235
G+NLPA V+I+ + Y + G + + +L+ + GRAGRP+ D GE +++ S+++
Sbjct: 341 AGLNLPARRVIIRSYRRYSSDS-GMQPIPVLEYKQMAGRAGRPRLDPYGEAVLLAKSYEE 399
Query: 236 LAY 238
L +
Sbjct: 400 LLF 402
>sp|Q8PZR7|HELS_METMA Putative ski2-type helicase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=MM_0425 PE=3 SV=1
Length = 730
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 147/528 (27%), Positives = 253/528 (47%), Gaps = 63/528 (11%)
Query: 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRER 750
P Q + N+L PT SGKT+ AELAML + + K +YI PL+A+ E+
Sbjct: 26 PPQAEAVEKGLLEGKNLLAAIPTASGKTLLAELAMLK--SVLNGGKALYIVPLRALASEK 83
Query: 751 MNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVG 810
+++ S LG + TGDY L DII++T EK D + RN + +++++
Sbjct: 84 FRRFQE--FSVLGMRVGISTGDYDRRDEGLGINDIIVATSEKTDSLLRNETA--WMQEIS 139
Query: 811 LMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGE 869
+++ DE+HL+ + +RGP LE+ +S++R ++ + + + LS + NA +LA WL E
Sbjct: 140 VVVADEVHLIDSPDRGPTLEITLSKLRRMNP----SCQVLALSATVGNADELAAWLDA-E 194
Query: 870 IGLFNFKPSVRPVPLEVHIQG--YPGKFYCP-RMNSMNKPAY-----AAICTHSPTKPVL 921
+ L ++P+ ++G Y G FYC + + +P + T L
Sbjct: 195 LVLSEWRPTD-------LMEGVFYNGIFYCKDKEKPVGQPTKDEAVNLVLDTIKEGGQCL 247
Query: 922 IFVSSRRQT---RLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGI 978
+F SSR+ A+ ++ S+E G+ +E ++ + V+ L ++ G
Sbjct: 248 VFESSRKNCMGFAKKAVSAVKKTLSNEDRETLAGIADEIIENSETDVSSV-LATCVRSGT 306
Query: 979 GLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYV 1038
HHAGL R LVE F +I+++ T TLA G+NLPA VII+ Y +
Sbjct: 307 AFHHAGLTTPLRELVENGFREGRIKIISSTPTLAAGLNLPARRVIIRSYRRYSSDSGMQ- 365
Query: 1039 DFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYK-KFLYEPFPVESSLRD------ 1091
P+ + QM GRAGRP+ D +G+AV+L KS+ + FL+E + +E+ D
Sbjct: 366 PIPVLEYKQMAGRAGRPRLDPYGEAVLLA----KSYEEFVFLFEKY-IEAGAEDIWSKLG 420
Query: 1092 ---QLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSR 1148
L H + I +G +E+ + +L T+ A + +G LS
Sbjct: 421 TENALRTHILSTISNGFARTREELMDFLEATF----FAFQYSNFG------------LSA 464
Query: 1149 LVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNI 1196
+V + L G ++ D + T+ G + S+ Y+ ++ ++ +
Sbjct: 465 VVDECLDFLRREGMLEKDPDALVSTVFGKLVSRLYIDPLSAALIAKGL 512
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 23/234 (9%)
Query: 9 RIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQ--YIGI--SEPNFAARNE 64
+++ LSAT+ N E+A +L + E+ L S +RP L + Y GI + +
Sbjct: 173 QVLALSATVGNADELAAWL--DAELVL----SEWRPTDLMEGVFYNGIFYCKDKEKPVGQ 226
Query: 65 LLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSL 124
+ V+D++++G Q +VF SRK+ + A+K V ++ +N+ L+
Sbjct: 227 PTKDEAVNLVLDTIKEGGQCLVFESSRKNCMGFAKKAVSAVKK-----TLSNEDRETLAG 281
Query: 125 IKKDVMKSRNKDLIELFGLAV----GVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
I +++++ D+ + V HHAG+ R L E F EG +K++ T TLA
Sbjct: 282 IADEIIENSETDVSSVLATCVRSGTAFHHAGLTTPLRELVENGFREGRIKIISSTPTLAA 341
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIIT 231
G+NLPA V+I+ + Y + G + + +L+ + GRAGRP+ D GE +++
Sbjct: 342 GLNLPARRVIIRSYRRYSSDS-GMQPIPVLEYKQMAGRAGRPRLDPYGEAVLLA 394
>sp|Q465R3|HELS_METBF Putative ski2-type helicase OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=Mbar_A3508 PE=3 SV=1
Length = 729
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 152/542 (28%), Positives = 260/542 (47%), Gaps = 64/542 (11%)
Query: 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765
N+L PT SGKT+ AELAML + + K +YI PL+A+ E+ +++ S+LG
Sbjct: 41 NLLAAIPTASGKTLLAELAMLK--SILAGGKALYIVPLRALASEKFRRFRE--FSELGIR 96
Query: 766 MVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER 824
+ TGDY L DII++T EK D + RN +++++ +++ DE+HL+ + +R
Sbjct: 97 VGISTGDYDLRDEGLGVNDIIVATSEKTDSLLRN--ETVWMQEISVVVADEVHLIDSPDR 154
Query: 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPL 884
GP LEV ++++R ++ + + + LS + NA +LA WL E+ + ++P+
Sbjct: 155 GPTLEVTLAKLRKMNP----SCQILALSATVGNADELAVWLE-AELVVSEWRPTEL---- 205
Query: 885 EVHIQG--YPGKFYCP------RMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRL---T 933
++G + G FYC ++ ++ A+ T L+F SSR+
Sbjct: 206 ---LEGVFFNGTFYCKDREKTVEQSTKDEAVNLALDTLKKDGQCLVFESSRKNCMAFAKK 262
Query: 934 ALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLV 993
A ++ S E G+ +E L+ + T NL ++ G HHAGL R LV
Sbjct: 263 AASTVKKTLSAEDRNALAGIADEILENSETD-TSTNLAVCIRSGTAFHHAGLTTPLRELV 321
Query: 994 EELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAG 1053
E+ F +I+++ T TLA G+NLPA VII+ Y + P+ + QM GRAG
Sbjct: 322 EDGFRAGRIKLISSTPTLAAGLNLPARRVIIRNYRRYSSEDGMQ-PIPVLEYKQMAGRAG 380
Query: 1054 RPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRD---------QLHDHFNAEIVSG 1104
RP+ D +G+AV LV + K F FL+E + +E++ D L H + I +G
Sbjct: 381 RPRLDPYGEAV-LVAKSYKEFV--FLFENY-IEANAEDIWSKLGTENALRTHVLSTISNG 436
Query: 1105 TIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVK 1164
++ + +L T+ A + +G LS +V L G ++
Sbjct: 437 FARTYDELMDFLEATF----FAFQYSNFG------------LSTVVNECLNFLRQEGMLE 480
Query: 1165 MTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLE--VFLHILSGASEYDELPVRH 1222
+D + PT G + S+ Y+ ++ + + SL LH++ + L +R
Sbjct: 481 -KDDALIPTSFGKLVSRLYIDPLSAARIAKGLKGAKSLSELTLLHLVCSTPDMRLLYMRS 539
Query: 1223 NE 1224
++
Sbjct: 540 HD 541
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 112/243 (46%), Gaps = 23/243 (9%)
Query: 9 RIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSE 68
+I+ LSAT+ N E+A +L S +RP L + R + + +
Sbjct: 173 QILALSATVGNADELAVWLEAE------LVVSEWRPTELLEGVFFNGTFYCKDREKTVEQ 226
Query: 69 ICYKKVV----DSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSL 124
+ V D+L++ Q +VF SRK+ + A+K ++ + + L+
Sbjct: 227 STKDEAVNLALDTLKKDGQCLVFESSRKNCMAFAKKAASTVKK-----TLSAEDRNALAG 281
Query: 125 IKKDVMKSRNKDLIELFGLAV----GVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAW 180
I +++++ D + + HHAG+ R L E F G +K++ T TLA
Sbjct: 282 IADEILENSETDTSTNLAVCIRSGTAFHHAGLTTPLRELVEDGFRAGRIKLISSTPTLAA 341
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIITSHDKLA 237
G+NLPA V+I+ + Y + G + + +L+ + GRAGRP+ D GE +++ K
Sbjct: 342 GLNLPARRVIIRNYRRYSSE-DGMQPIPVLEYKQMAGRAGRPRLDPYGEAVLVAKSYKEF 400
Query: 238 YYL 240
+L
Sbjct: 401 VFL 403
>sp|Q12WZ6|HELS_METBU Putative ski2-type helicase OS=Methanococcoides burtonii (strain DSM
6242) GN=Mbur_1102 PE=3 SV=1
Length = 760
Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 147/512 (28%), Positives = 242/512 (47%), Gaps = 48/512 (9%)
Query: 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRER 750
P Q + + N+L PT SGKT+ AELAM+ K +YI PL+A+ E+
Sbjct: 26 PPQAEAIEMGLLEKKNLLAAIPTASGKTLLAELAMIKAIREGG--KALYIVPLRALASEK 83
Query: 751 MNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVG 810
+K+ ++ G ++ TGD L DII++T EK D + RN S ++ ++
Sbjct: 84 FERFKE--LAPFGIKVGISTGDLDSRADWLGVNDIIVATSEKTDSLLRNGTS--WMDEIT 139
Query: 811 LMILDEIHLLGAE-RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGE 869
+++DEIHLL ++ RGP LEV ++++ ++ V+ + LS + NA ++ADWLG
Sbjct: 140 TVVVDEIHLLDSKNRGPTLEVTITKLMRLNPD----VQVVALSATVGNAREMADWLGAAL 195
Query: 870 IGLFNFKPS-VRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAIC--THSPTKPVLIFVSS 926
+ L ++P+ + L +PG +++ + K + T L+F SS
Sbjct: 196 V-LSEWRPTDLHEGVLFGDAINFPGS--QKKIDRLEKDDAVNLVLDTIKAEGQCLVFESS 252
Query: 927 RRQTR---LTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHA 983
RR TA + ++ + G+ EE ++ T L ++ G+ HHA
Sbjct: 253 RRNCAGFAKTASSKVAKILDNDIMIKLAGIAEE-VESTGETDTAIVLANCIRKGVAFHHA 311
Query: 984 GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPIT 1043
GLN R LVE F N I+V+ T TLA G+NLPA VII+ +D P+
Sbjct: 312 GLNSNHRKLVENGFRQNLIKVISSTPTLAAGLNLPARRVIIRSYRRFDSNFGMQ-PIPVL 370
Query: 1044 DILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKF--LYEPFPVESSLRD---------Q 1092
+ QM GRAGRP D +G++V+L Y +F L E + VE+ D
Sbjct: 371 EYKQMAGRAGRPHLDPYGESVLLAKT-----YDEFAQLMENY-VEADAEDIWSKLGTENA 424
Query: 1093 LHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQN 1152
L H + IV+G +++ + T+ A + LE+ + L + + + +
Sbjct: 425 LRTHVLSTIVNGFASTRQELFDFFGATF----FAYQQDKWMLEEVINDCLEFLIDKAMVS 480
Query: 1153 TFEDLEDSGCVKMTEDTVEPTMLGTIASQYYL 1184
ED+ED+ + + T LG++ S Y+
Sbjct: 481 ETEDIEDASKLFL-----RGTRLGSLVSMLYI 507
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 94/370 (25%), Positives = 170/370 (45%), Gaps = 58/370 (15%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLS 67
+++V LSAT+ N E+A +L G S +RP L + + NF + +
Sbjct: 172 VQVVALSATVGNAREMADWL------GAALVLSEWRPTDLHEGVLFGDAINFPGSQKKID 225
Query: 68 EI----CYKKVVDSLRQGHQAMVFVHSRKDTV---KTAQKLVDLARRYEDLEVFNNDTHP 120
+ V+D+++ Q +VF SR++ KTA V ++ +ND
Sbjct: 226 RLEKDDAVNLVLDTIKAEGQCLVFESSRRNCAGFAKTASSKV--------AKILDNDIMI 277
Query: 121 QLSLIKKDVMKSRNKD----LIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTA 176
+L+ I ++V + D L V HHAG+ + R L E F + L+KV+ T
Sbjct: 278 KLAGIAEEVESTGETDTAIVLANCIRKGVAFHHAGLNSNHRKLVENGFRQNLIKVISSTP 337
Query: 177 TLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIIT-S 232
TLA G+NLPA V+I+ + +D G + + +L+ + GRAGRP D GE +++ +
Sbjct: 338 TLAAGLNLPARRVIIRSYRRFDSNF-GMQPIPVLEYKQMAGRAGRPHLDPYGESVLLAKT 396
Query: 233 HDKLAYYLRLLTSQLPIESQFI-------SSLKDNLNAEVALGTVTNVKEACAWLGYTYL 285
+D+ A +L+ + + +++ I ++L+ ++ + + G + +E + G T+
Sbjct: 397 YDEFA---QLMENYVEADAEDIWSKLGTENALRTHVLSTIVNGFASTRQELFDFFGATFF 453
Query: 286 SIRMKLNPLAYGIGW--DEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTE 343
+ + W +EVI D L +A+V++ D +K+ T
Sbjct: 454 AYQQD--------KWMLEEVINDCLEFLIDKAMVSETEDIEDASKLF--------LRGTR 497
Query: 344 LGRIASHFYI 353
LG + S YI
Sbjct: 498 LGSLVSMLYI 507
>sp|A7IB61|HELS_METB6 Putative ski2-type helicase OS=Methanoregula boonei (strain 6A8)
GN=Mboo_2458 PE=3 SV=1
Length = 723
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 126/386 (32%), Positives = 197/386 (51%), Gaps = 51/386 (13%)
Query: 705 NNVLLGAPTGSGKTISAELAM-LHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763
N+L+ PT SGKT+ AE+AM H+ N K +YI PLKA+ E+ ++ ++ G
Sbjct: 40 KNLLVAIPTASGKTLIAEMAMHRHIANGG---KCLYIVPLKALASEKYEEFGNK-----G 91
Query: 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA- 822
++ TGD AL DII++T EK D + RN ++ + L+++DEIHL+ +
Sbjct: 92 VKVGLSTGDLDRRDDALGKNDIIVATSEKVDSLLRN--GARWIPDITLVVIDEIHLIDSP 149
Query: 823 ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPV 882
+RGP LE+++++MR ++ IGLS + N LA WL + S RPV
Sbjct: 150 DRGPTLEMVIAKMR----SKNPGMQLIGLSATIGNPKVLAGWLDAELV-----TSSWRPV 200
Query: 883 PLEVHIQG--YPGKF-YCPRMNSMNKPAYA----AIC--THSPTKPVLIFVSSRRQTRLT 933
L QG Y + + RM + + + +C T + L+FVSSRR
Sbjct: 201 DLR---QGVFYDNRIQFAERMRPVKQVSKNYDDLNLCLDTIAEGGQCLVFVSSRRNAEAF 257
Query: 934 ALDLIQFAASDETP------RQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLND 987
A S++ R G P E ++ + + V G HHAGL+
Sbjct: 258 AKRAAGAIKSEDAALAACAERLLEGTPTEMVKTLAACVAK---------GAAFHHAGLSR 308
Query: 988 KDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKG-TEYYDGKTKRYVDFPITDIL 1046
K+RS+VEE F N ++ + T TLA G+NLPA VII+ + G+ + + P+++
Sbjct: 309 KERSIVEEAFRKNLLKCISSTPTLAAGLNLPARRVIIRDYLRFSAGEGMQPI--PVSEYR 366
Query: 1047 QMMGRAGRPQYDQHGKAVILVHEPKK 1072
QM GRAGRP+ D +G+AV++ E ++
Sbjct: 367 QMAGRAGRPRLDPYGEAVLIAKEAEQ 392
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/242 (26%), Positives = 111/242 (45%), Gaps = 37/242 (15%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLS 67
++++GLSAT+ N +A +L SS+RP+ L Q + FA R +
Sbjct: 169 MQLIGLSATIGNPKVLAGWLDAE------LVTSSWRPVDLRQGVFYDNRIQFAERMRPVK 222
Query: 68 EICYKK-----VVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQL 122
++ +D++ +G Q +VFV SR++ A++ A + ED L
Sbjct: 223 QVSKNYDDLNLCLDTIAEGGQCLVFVSSRRNAEAFAKRAAG-AIKSED---------AAL 272
Query: 123 SLIKKDVMKSRNKDLIELFGLAVG----VHHAGMLRSDRGLTERLFSEGLLKVLVCTATL 178
+ + +++ ++++ V HHAG+ R +R + E F + LLK + T TL
Sbjct: 273 AACAERLLEGTPTEMVKTLAACVAKGAAFHHAGLSRKERSIVEEAFRKNLLKCISSTPTL 332
Query: 179 AWGVNLPAHTVVIK-------GTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIIT 231
A G+NLPA V+I+ G + +R + GRAGRP+ D GE ++I
Sbjct: 333 AAGLNLPARRVIIRDYLRFSAGEGMQPIPVSEYRQMA-----GRAGRPRLDPYGEAVLIA 387
Query: 232 SH 233
Sbjct: 388 KE 389
>sp|A6UN73|HELS_METVS Putative ski2-type helicase OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=Mevan_0030 PE=3 SV=1
Length = 751
Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 138/456 (30%), Positives = 225/456 (49%), Gaps = 46/456 (10%)
Query: 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAML-HLFNTQSDM---KVVYIAPLKAI 746
P + I L N L+ PT SGKT+ E+A+L H+ + ++ K ++I PLKA+
Sbjct: 19 PQKKVIEEGLLDKSKNFLICIPTASGKTLIGEMALLNHVLDENYNLTGKKGLFIVPLKAL 78
Query: 747 VRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSA-DIIISTPEKWDGISRNWHSRNY 805
E+ ++++ + G ++ GDY D LS +III+T EK D + R H+ +
Sbjct: 79 ASEKFDEFQKK-YETYGIKVGMSIGDY--DTKEDLSKYNIIITTSEKLDSLMR--HNIEW 133
Query: 806 VKKVGLMILDEIHLLG-AERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADW 864
+K + L ++DEIHL+G ERG LEVI+++++ I++Q +GLS + N ++A+W
Sbjct: 134 IKDLSLAVIDEIHLIGDNERGGTLEVILTKLKNINAQ------IVGLSATVGNPEEIANW 187
Query: 865 LGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK--PAYAAICTHSPTKPV-- 920
L + RPV L+ I Y +S K A +I ++ T +
Sbjct: 188 LNAKLV-----TDEWRPVELKKGIYLENEINYINNQDSQKKSFKAVKSISRNNLTDLIVD 242
Query: 921 --------LIFVSSRRQT--RLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQV-TDQN 969
LIF +S+R +L ++ + E + EE L ++ + T ++
Sbjct: 243 SVNEKGSCLIFCNSKRNAVGESKKHNLTKYLSKAEL-NDLNSISEEILSILETPTETCKS 301
Query: 970 LRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEY 1029
L + ++ G+ HHAGL + R VEE F N I+V+ CT TL+ G+NLP II+
Sbjct: 302 LSECIKKGVAFHHAGLTYQHRKAVEEGFRNKVIKVICCTPTLSAGLNLPCRRAIIRDIRR 361
Query: 1030 YDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVE--- 1086
Y +D P +I Q +GRAGRP D +G+ +IL +K K FL P+E
Sbjct: 362 YS--QNGLIDIPKLEIHQCIGRAGRPGLDPYGEGIILAKN-EKDVEKAFLALTGPLENIY 418
Query: 1087 SSLRDQ--LHDHFNAEIVSGTIFHKEDAVHYLSWTY 1120
S L +Q L H I + I + ++++ T+
Sbjct: 419 SKLSNQKVLRVHILGLIATLEIKSTSELINFIKNTF 454
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 27/243 (11%)
Query: 9 RIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQ--------QYIGISE---P 57
+IVGLSAT+ N E+A +L +RP+ L + YI +
Sbjct: 170 QIVGLSATVGNPEEIANWLNAK------LVTDEWRPVELKKGIYLENEINYINNQDSQKK 223
Query: 58 NFAARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQK--LVDLARRYEDLEVFN 115
+F A + +VDS+ + ++F +S+++ V ++K L + E L N
Sbjct: 224 SFKAVKSISRNNLTDLIVDSVNEKGSCLIFCNSKRNAVGESKKHNLTKYLSKAE-LNDLN 282
Query: 116 NDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCT 175
+ + LS+++ K L E V HHAG+ R E F ++KV+ CT
Sbjct: 283 SISEEILSILETPTETC--KSLSECIKKGVAFHHAGLTYQHRKAVEEGFRNKVIKVICCT 340
Query: 176 ATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIIITS 232
TL+ G+NLP +I+ + Y G D+ L+I GRAGRP D GEGII+
Sbjct: 341 PTLSAGLNLPCRRAIIRDIRRYS--QNGLIDIPKLEIHQCIGRAGRPGLDPYGEGIILAK 398
Query: 233 HDK 235
++K
Sbjct: 399 NEK 401
>sp|Q0W6L1|HELS_UNCMA Putative ski2-type helicase OS=Uncultured methanogenic archaeon RC-I
GN=UNCMA_22030 PE=3 SV=1
Length = 740
Score = 152 bits (384), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 139/575 (24%), Positives = 262/575 (45%), Gaps = 60/575 (10%)
Query: 678 NIYEALYNF------SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT 731
N+ +AL +F P Q + N+L PT SGKT+ AE+AML +
Sbjct: 7 NLPQALKDFYTGSGIPELYPPQAEAIRQGLLDGKNLLAAIPTASGKTLLAEMAMLK--SI 64
Query: 732 QSDMKVVYIAPLKAIVRERMN---DWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIIS 788
K +YI PLKA+ E+ + ++ + G ++ TGD+ L DII++
Sbjct: 65 AEGGKAIYIVPLKALASEKYDRFLEFSKLPIKPDGVKVGIATGDFDSRDEYLGEKDIIVA 124
Query: 789 TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERAVR 847
T EK D + RN S ++ + +++ DE+HL+ + RGP LEV ++++R I+ ++
Sbjct: 125 TSEKTDSLLRNGAS--WLSGLSVVVADEVHLIDSPNRGPTLEVTLAKLRKINVN----LQ 178
Query: 848 FIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPA 907
+ LS + NA LA W+ + + RP L+ + + ++N
Sbjct: 179 ILALSATIGNAKALAKWMDAALV-----QSEWRPTTLKEGVFYGRAITFKKEKRTVNNAG 233
Query: 908 YAAIC-----THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETP--RQFLGMPEEDLQM 960
+ T L+F ++R+ + A + + + P ++ L ++D+
Sbjct: 234 PDEVNSLVADTLEEGGQCLVFANTRKSSESIAQKVARSLSKKLQPAEKEQLAKLKQDVLR 293
Query: 961 VLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAH 1020
T + L + + G+ HHAGL + R +VE+ F N ++V+ CT TLA G+NLPA
Sbjct: 294 HAETDTCEKLAECVGNGVAFHHAGLKGEHRRIVEDGFRQNILKVIACTPTLAAGLNLPAR 353
Query: 1021 LVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILV--HEPKKSFYKKF 1078
VII+ + +D V P+ + QM GRAGRP+ D +G+AV++ ++ + +
Sbjct: 354 RVIIRDYKRFDVNYGS-VPIPVLEYKQMAGRAGRPRLDPYGEAVLIAKNYDEFGELMENY 412
Query: 1079 L-YEPFPVESSLRDQ--LHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLE 1135
+ +P + S L + + H + + + ++D ++ T+ AY
Sbjct: 413 INADPEHITSKLGTEPAMRAHALSAVATDFCRSRQDLKAFMDTTFF--------AYQ--- 461
Query: 1136 DTEAEGLSSYLSRLVQNTFED-LEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGS 1194
LS ++ N LE++ ++ +++ T LG++ S+ Y+ ++ ++
Sbjct: 462 -------RGDLSHVIDNVLNFLLEENMIIESKGGSLKATDLGSLVSKLYIDPLSAALIAE 514
Query: 1195 NIG-----PDTSLEVFLHILSGASEYDELPVRHNE 1224
+ PD + LH++ + L +R +
Sbjct: 515 GLEKAKKRPDVAEFGLLHLICSTPDVKSLYLRRGD 549
Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 103/388 (26%), Positives = 169/388 (43%), Gaps = 56/388 (14%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQ-----QYIGISEPNFAAR 62
++I+ LSAT+ N +A++ M S +RP L + + I +
Sbjct: 177 LQILALSATIGNAKALAKW------MDAALVQSEWRPTTLKEGVFYGRAITFKKEKRTVN 230
Query: 63 NELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLV-DLARRYEDLEVFNNDTHPQ 121
N E+ V D+L +G Q +VF ++RK + AQK+ L+++ + E Q
Sbjct: 231 NAGPDEV-NSLVADTLEEGGQCLVFANTRKSSESIAQKVARSLSKKLQPAE------KEQ 283
Query: 122 LSLIKKDVMKSRNKD----LIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTAT 177
L+ +K+DV++ D L E G V HHAG+ R + E F + +LKV+ CT T
Sbjct: 284 LAKLKQDVLRHAETDTCEKLAECVGNGVAFHHAGLKGEHRRIVEDGFRQNILKVIACTPT 343
Query: 178 LAWGVNLPAHTVVIKGTQLYDPKAGG--WRDLGMLDIFGRAGRPQFDRSGEGIIIT-SHD 234
LA G+NLPA V+I+ + +D G L + GRAGRP+ D GE ++I ++D
Sbjct: 344 LAAGLNLPARRVIIRDYKRFDVNYGSVPIPVLEYKQMAGRAGRPRLDPYGEAVLIAKNYD 403
Query: 235 KLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPL 294
+ L+ + + + + I+S L E A+ A + + + R L
Sbjct: 404 EFG---ELMENYINADPEHITS---KLGTEPAMRA-----HALSAVATDFCRSRQDL--- 449
Query: 295 AYGIGWDEVIADPSLSLKQRALVTDAARALDKA------KMMRFDEKSGNFYCTELGRIA 348
+ D + QR D + +D + M + K G+ T+LG +
Sbjct: 450 -------KAFMDTTFFAYQRG---DLSHVIDNVLNFLLEENMIIESKGGSLKATDLGSLV 499
Query: 349 SHFYIQYSSVETYNEMLRRHMNDSEVIE 376
S YI S E L + +V E
Sbjct: 500 SKLYIDPLSAALIAEGLEKAKKRPDVAE 527
>sp|Q9YFQ8|HELS_AERPE Putative ski2-type helicase OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=APE_0191.1
PE=3 SV=2
Length = 735
Score = 147 bits (372), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 126/400 (31%), Positives = 199/400 (49%), Gaps = 52/400 (13%)
Query: 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748
F P Q N+++ APTGSGKT A +A+++ ++ + Y+ PLK++
Sbjct: 29 FEP-QYMALQAGVEKGENLVVAAPTGSGKTFIALVAIVNSL-ARAGGRAFYLVPLKSVAY 86
Query: 749 ERMNDWKDRLVSQLGKEMVEMTGDY---TPDLMALLSADIIISTPEKWDGISRNWHSRNY 805
E+ + ++S++G ++ GD+ P+ A ++I+T EK+D + R S +
Sbjct: 87 EKYTSFS--ILSRMGLKLKISVGDFREGPPE------APVVIATYEKFDSLLRV--SPSL 136
Query: 806 VKKVGLMILDEIHLLG-AERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADW 864
+ V ++I+DEIH + +RGPILE IVSRM ++S E + +GLS + NAG++A+W
Sbjct: 137 ARNVSVLIVDEIHSVSDPKRGPILESIVSRM--LASAGE--AQLVGLSATVPNAGEIAEW 192
Query: 865 LGVGEIGLFNFKPSVRPVPLEVHI-QGYPGKFY--------CPRMNSMNKPAYAAICTHS 915
+G G+I + S RPVPL ++ + Y K Y PR+ + AA
Sbjct: 193 IG-GKI----VESSWRPVPLREYVFKEY--KLYSPTGGLREVPRVYGLYDLDLAAEAIED 245
Query: 916 PTKPVLIFVSSRRQTRLTALDLIQFAA-------SDETPRQFLGMPEEDLQMVLSQVTDQ 968
+ L+F SRR+ A+ L + AA S R + E + +
Sbjct: 246 GGQ-ALVFTYSRRR----AVTLAKRAAKRLGRRLSSREARVY--SAEASRAEGAPRSVAE 298
Query: 969 NLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTE 1028
L + GI HHAGL R VEE F ++V+ T TLA GVNLPA V+I
Sbjct: 299 ELASLIAAGIAYHHAGLPPSLRKTVEEAFRAGAVKVVYSTPTLAAGVNLPARRVVIDSYY 358
Query: 1029 YYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068
Y+ + + + + QM GRAGRP D+ G+A+I+
Sbjct: 359 RYEAGFREPIR--VAEYKQMAGRAGRPGLDEFGEAIIVAE 396
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 127/485 (26%), Positives = 212/485 (43%), Gaps = 83/485 (17%)
Query: 9 RIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSE 68
++VGLSAT+PN E+A+++ G +SS+RP+PL ++Y+ E + L E
Sbjct: 175 QLVGLSATVPNAGEIAEWI------GGKIVESSWRPVPL-REYV-FKEYKLYSPTGGLRE 226
Query: 69 IC-------YKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVD-LARRYEDLE--VFNNDT 118
+ +++ G QA+VF +SR+ V A++ L RR E V++ +
Sbjct: 227 VPRVYGLYDLDLAAEAIEDGGQALVFTYSRRRAVTLAKRAAKRLGRRLSSREARVYSAEA 286
Query: 119 HPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATL 178
+ +S ++L L + HHAG+ S R E F G +KV+ T TL
Sbjct: 287 SRA-----EGAPRSVAEELASLIAAGIAYHHAGLPPSLRKTVEEAFRAGAVKVVYSTPTL 341
Query: 179 AWGVNLPAHTVVIKGTQLYDPKAGGWRDLGML----DIFGRAGRPQFDRSGEGIIITS-- 232
A GVNLPA VVI Y+ G+R+ + + GRAGRP D GE II+
Sbjct: 342 AAGVNLPARRVVIDSYYRYE---AGFREPIRVAEYKQMAGRAGRPGLDEFGEAIIVAERL 398
Query: 233 ---HDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRM 289
D ++ Y+R ++ + L+ + LG V E
Sbjct: 399 DRPEDLISGYIRAPPERVESRLAGLRGLRHFI-----LGIVAPEGEVS------------ 441
Query: 290 KLNPLAYGIGWDEVIADPSLSLKQRALVTDA-ARALDKAKMMRFDEKSG-NFYCTELGRI 347
IG E ++ +L QR L + ARA++ E G T LGR
Sbjct: 442 --------IGSIEKVSGLTLYSLQRGLPRETIARAVEDLSAWGLVEVKGWRIAATSLGRE 493
Query: 348 ASHFYIQYSSVETYNEMLRRHM---NDSEVIEMVSHSSEFENI-VVRDEEQNELETLV-- 401
+ Y+ SV + E + +H+ N+ +++ ++S + + R EE+ LE ++
Sbjct: 494 VAAVYLDPESVPVFREEV-KHLSFDNEFDILYLISTMPDMVRLPATRREEERLLEAILDA 552
Query: 402 --QTLCPVEVKGGPSNKHGKISILIQLYISRGWIDT------------FSLVSDAAYISA 447
+ L V+ G K +++++L+I DT ++VS A +I++
Sbjct: 553 SPRMLSSVDWLGPEEMAAVKTAVVLKLWIDEASEDTIYGEWGVHTGDLLNMVSTAEWIAS 612
Query: 448 SLARI 452
L+RI
Sbjct: 613 GLSRI 617
>sp|O26901|HELS_METTH Putative ski2-type helicase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 /
Delta H) GN=MTH_810 PE=3 SV=1
Length = 690
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 128/482 (26%), Positives = 225/482 (46%), Gaps = 52/482 (10%)
Query: 688 HFNPIQTQIFHILY-HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAI 746
NP Q Y +++N ++ PT SGKT+ +A L +V+Y PL +I
Sbjct: 21 ELNPAQRSAIEAGYLESEDNYIIAIPTASGKTLLGIIAALK--TVMEGGRVIYTVPLLSI 78
Query: 747 VRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISR-NWHSRNY 805
E++ +++ +L + + + D ++DI + E +D ++R +W N
Sbjct: 79 QNEKIKEFR-----KLEEHGIRVGKDPR-------TSDIAVMVFESFDSLTRFSW---NI 123
Query: 806 VKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADW 864
+++V L+I+DE H++G RGP++E ++R R ++ +VR + LS L+N ++A W
Sbjct: 124 LREVDLLIVDEFHMIGEYTRGPVIESAITRARTLNP----SVRIVALSATLSNMDEIAGW 179
Query: 865 LGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFV 924
L + + RPVPL + + + + K ++ S T L FV
Sbjct: 180 LDARVV-----EHDYRPVPLHREVLDTEMFGVREKNDVVLKVLERSLEDGSQT---LAFV 231
Query: 925 SSRRQTRLTA---LDLIQFAASDETPRQFLGMPEEDLQMVLSQ-----VTDQNLRQTLQF 976
S+RR T A D I D+ F + + L++ S+ T L + L+
Sbjct: 232 STRRFTESLASHLADKISGKIPDDMVESFREVAGKVLEVPKSRGSPPTSTCLKLAECLEA 291
Query: 977 GIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKR 1036
GI HHAGL ++ R ++E+ F + I ++ T +L +GVNLP+ V+I+ + + R
Sbjct: 292 GIAFHHAGLFNRQREIIEDEFRDGNILMITATPSLMYGVNLPSRTVVIRDYTRWTSQGPR 351
Query: 1037 YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSL------R 1090
+ P+ D QM GRAGRPQYD G + ++ ++ + Y VE + R
Sbjct: 352 RI--PVFDYEQMSGRAGRPQYDDAGYSYLIARSHDEAMDLEEYYIRGEVERTTSRIIENR 409
Query: 1091 DQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINP--AYYGLEDT--EAEGLSSYL 1146
D L+ A++ SG E+ + T+ ++ P +G++ E E + YL
Sbjct: 410 DALYRQIIAQVASGLSGTTEELADFFRNTFYGYQMVEGPFSDSFGMDSIQYEVENATEYL 469
Query: 1147 SR 1148
R
Sbjct: 470 MR 471
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 147/317 (46%), Gaps = 40/317 (12%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLS 67
+RIV LSATL N E+A +L + YRP+PL ++ + F R + +
Sbjct: 161 VRIVALSATLSNMDEIAGWLDAR------VVEHDYRPVPLHREVLDTE--MFGVREK--N 210
Query: 68 EICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVD-LARRYED--LEVFNNDTHPQLSL 124
++ K + SL G Q + FV +R+ T A L D ++ + D +E F L
Sbjct: 211 DVVLKVLERSLEDGSQTLAFVSTRRFTESLASHLADKISGKIPDDMVESFREVAGKVL-- 268
Query: 125 IKKDVMKSRNK-------DLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTAT 177
+V KSR L E + HHAG+ R + E F +G + ++ T +
Sbjct: 269 ---EVPKSRGSPPTSTCLKLAECLEAGIAFHHAGLFNRQREIIEDEFRDGNILMITATPS 325
Query: 178 LAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLD---IFGRAGRPQFDRSGEGIIIT-SH 233
L +GVNLP+ TVVI+ + + G R + + D + GRAGRPQ+D +G +I SH
Sbjct: 326 LMYGVNLPSRTVVIRDYTRWTSQ--GPRRIPVFDYEQMSGRAGRPQYDDAGYSYLIARSH 383
Query: 234 DKL----AYYLR---LLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLS 286
D+ YY+R T+ IE++ +L + A+VA G +E + T+
Sbjct: 384 DEAMDLEEYYIRGEVERTTSRIIENR--DALYRQIIAQVASGLSGTTEELADFFRNTFYG 441
Query: 287 IRMKLNPLAYGIGWDEV 303
+M P + G D +
Sbjct: 442 YQMVEGPFSDSFGMDSI 458
>sp|Q2VPA6|HELQ_MOUSE Helicase POLQ-like OS=Mus musculus GN=Helq PE=2 SV=2
Length = 1069
Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 116/399 (29%), Positives = 184/399 (46%), Gaps = 54/399 (13%)
Query: 705 NNVLLGAPTGSGKTISAELAMLH-LFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763
N++ PT GKT+ AE+ ML L Q D V+ I P AIV+E+++ +S G
Sbjct: 312 KNLIYSLPTSGGKTLVAEILMLQELLCRQKD--VLMILPYVAIVQEKISS-----LSSFG 364
Query: 764 KEMVEMTGDYT------PDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEI 817
E+ +Y P + + I+T EK + + + +GL+++DE+
Sbjct: 365 IELGFFVEEYAGSKGRFPPIKRREKKSLYIATIEKAHSLVNALIETSRLSTLGLVVVDEL 424
Query: 818 HLLG-AERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFK 876
H++G RG ILE+ ++++ Y S T+ IG+S L N DL +L E F+
Sbjct: 425 HMIGEGSRGAILEMTLAKVLYTSKTTQ----IIGMSATLNNVEDLQAFLK-AEYYTSQFR 479
Query: 877 P-------SVRPVPLEVHIQGYPGKF--------YCPRMNSMNKPAYAAICTHS-PTKPV 920
P V EV Q G Y + M+ A+ T P
Sbjct: 480 PVELKEFLKVNDTIYEVDSQAADGMTFSRLLSYKYSEALKKMDPDRLVALVTEVIPNYSC 539
Query: 921 LIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQN-------LRQT 973
L+F S++ A L +F + D +L E++ V+ + + L++T
Sbjct: 540 LVFCPSKKNCENVAEMLCKFLSKD-----YLNHREKEKCEVIKSLRNIGNGKVCPVLKRT 594
Query: 974 LQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGK 1033
+ FGI HH+GL ++R L+EE ++ + +L CTSTLA GVNLPA VI++ +
Sbjct: 595 VPFGIAYHHSGLTSEERKLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYVANTF 654
Query: 1034 TKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072
KR QM+GRAGR D G++++L+ E K
Sbjct: 655 LKR------NQYKQMVGRAGRAGIDTAGESILLLQEKDK 687
Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/323 (22%), Positives = 151/323 (46%), Gaps = 56/323 (17%)
Query: 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNF---- 59
T + +I+G+SATL N ++ FL+ ++ S +RP+ L ++++ +++ +
Sbjct: 446 TSKTTQIIGMSATLNNVEDLQAFLKAE------YYTSQFRPVEL-KEFLKVNDTIYEVDS 498
Query: 60 -AARNELLSEICYKKVVDSLRQ---------------GHQAMVFVHSRKDTVKTAQKLVD 103
AA S + K ++L++ + +VF S+K+ A+ L
Sbjct: 499 QAADGMTFSRLLSYKYSEALKKMDPDRLVALVTEVIPNYSCLVFCPSKKNCENVAEMLCK 558
Query: 104 -LARRYEDLEVFNNDTHPQLSLIK--KDVMKSRNKDLIEL---FGLAVGVHHAGMLRSDR 157
L++ Y N+ + +IK +++ + +++ FG+A HH+G+ +R
Sbjct: 559 FLSKDY-----LNHREKEKCEVIKSLRNIGNGKVCPVLKRTVPFGIAY--HHSGLTSEER 611
Query: 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDP--KAGGWRDLGMLDIFGR 215
L E +S G+L +L CT+TLA GVNLPA V+++ + + K ++ + GR
Sbjct: 612 KLLEEAYSTGVLCLLTCTSTLAAGVNLPARRVILRAPYVANTFLKRNQYKQM-----VGR 666
Query: 216 AGRPQFDRSGEGIIITSHDKLAYYLRLLTSQLPIES-------QFISSLKDNLNAEVALG 268
AGR D +GE I++ L L++ P+E+ +F ++ + + L
Sbjct: 667 AGRAGIDTAGESILLLQEKDKQQVLELISG--PLETCCSHLVEEFTKGIQALFLSLIGLK 724
Query: 269 TVTNVKEACAWLGYTYLSIRMKL 291
++ + ++ T+ ++ K+
Sbjct: 725 IAASLGDIYQFMSGTFFGVQQKI 747
>sp|O75417|DPOLQ_HUMAN DNA polymerase theta OS=Homo sapiens GN=POLQ PE=1 SV=2
Length = 2590
Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 147/563 (26%), Positives = 255/563 (45%), Gaps = 103/563 (18%)
Query: 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765
N++ APT +GKT+ AEL +L + K ++I P ++ +E+ + L ++G +
Sbjct: 110 NLVYSAPTSAGKTLVAELLILKRV-LEMRKKALFILPFVSVAKEK-KYYLQSLFQEVGIK 167
Query: 766 MVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AER 824
+ G +P S DI + T E+ +G+ N + +G++++DE+H+LG + R
Sbjct: 168 VDGYMGSTSPS-RHFSSLDIAVCTIERANGLINRLIEENKMDLLGMVVVDELHMLGDSHR 226
Query: 825 GPILEVIVSRMRYIS-----------SQTERAVRFIGLSTALANAGDLADWLGVGEIGLF 873
G +LE++++++ YI+ S AV+ +G+S L N +A WL E+
Sbjct: 227 GYLLELLLTKICYITRKSASCQADLASSLSNAVQIVGMSATLPNLELVASWLN-AELYHT 285
Query: 874 NFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK--P--------------AYAAIC-THSP 916
+F RPVPL ++ Y M + + P Y IC HS
Sbjct: 286 DF----RPVPLLESVK-VGNSIYDSSMKLVREFEPMLQVKGDEDHVVSLCYETICDNHS- 339
Query: 917 TKPVLIFVSSRRQTRLTALDLIQ------------FAASDETPRQFLGMPEEDLQMVLSQ 964
VL+F S++ A D+I E P L +++L V+ Q
Sbjct: 340 ---VLLFCPSKKWCEKLA-DIIAREFYNLHHQAEGLVKPSECPPVIL--EQKELLEVMDQ 393
Query: 965 VT------DQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP 1018
+ D L++T+ +G+ HHAGL ++R ++E F I+VL TSTL+ GVNLP
Sbjct: 394 LRRLPSGLDSVLQKTVPWGVAFHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLP 453
Query: 1019 AHLVIIKGTEYYDGKTKRYVDFPITDIL---QMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075
A VII+ T + G+ P+ DIL QM+GRAGR D G+++++ +KS
Sbjct: 454 ARRVIIR-TPIFGGR-------PL-DILTYKQMVGRAGRKGVDTVGESILICKNSEKSKG 504
Query: 1076 KKFLYEPF-PVESSLRDQLHDHFNAE--------IVSGTIFHKEDAVHYLSWTYLFRRLA 1126
L PV S L+ + + IV G +D Y + T+L +
Sbjct: 505 IALLQGSLKPVRSCLQRREGEEVTGSMIRAILEIIVGGVASTSQDMHTYAACTFL--AAS 562
Query: 1127 INPAYYGL----EDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQY 1182
+ G+ E + + + + L++N F ++ TE + GT Y
Sbjct: 563 MKEGKQGIQRNQESVQLGAIEACVMWLLENEF--------IQSTEASD-----GTEGKVY 609
Query: 1183 YLSYVTVSMFGSNIGPDTSLEVF 1205
+ +++ + S++ P +L++F
Sbjct: 610 HPTHLGSATLSSSLSPADTLDIF 632
Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 133/289 (46%), Gaps = 65/289 (22%)
Query: 3 STQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQY-IGIS------ 55
S ++IVG+SATLPN VA +L N E+ + + +RP+PL + +G S
Sbjct: 254 SLSNAVQIVGMSATLPNLELVASWL--NAEL----YHTDFRPVPLLESVKVGNSIYDSSM 307
Query: 56 ------EPNFAARNEL--LSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARR 107
EP + + + +CY+ + D+ H ++F S+K +KL D+ R
Sbjct: 308 KLVREFEPMLQVKGDEDHVVSLCYETICDN----HSVLLFCPSKK----WCEKLADIIAR 359
Query: 108 YEDLEVFNNDTHPQLSLIKKDVMKS---RNKDLIELF--------GL----------AVG 146
F N H L+K K+L+E+ GL V
Sbjct: 360 E-----FYNLHHQAEGLVKPSECPPVILEQKELLEVMDQLRRLPSGLDSVLQKTVPWGVA 414
Query: 147 VHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRD 206
HHAG+ +R + E F +GL++VL T+TL+ GVNLPA V+I+ P GG R
Sbjct: 415 FHHAGLTFEERDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVIIR-----TPIFGG-RP 468
Query: 207 LGML---DIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLLTSQL-PIES 251
L +L + GRAGR D GE I+I + + + + LL L P+ S
Sbjct: 469 LDILTYKQMVGRAGRKGVDTVGESILICKNSEKSKGIALLQGSLKPVRS 517
>sp|Q5JGV6|HELS_PYRKO Putative ski2-type helicase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=TK1332 PE=3 SV=1
Length = 1125
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 98/326 (30%), Positives = 164/326 (50%), Gaps = 53/326 (16%)
Query: 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764
N++L PT SGKT+ +E+ M++ ++ K VY+ PLKA+ E+ ++K+ V LG
Sbjct: 40 KNLVLAIPTASGKTLVSEIVMVNKLLSEGG-KAVYLVPLKALAEEKYREFKEWEV--LGL 96
Query: 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E 823
+ TGDY L DII++T EK+D + R H +++K V L++ DE+HL+G+ +
Sbjct: 97 RVAATTGDYDSTDEWLGRYDIIVATAEKFDSLLR--HGASWIKDVKLVVADEVHLIGSYD 154
Query: 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVP 883
RG LE+I++ M + + LS + NA +LA+WL + RPV
Sbjct: 155 RGATLEMILTHML-------GKAQILALSATVGNAEELAEWLDASLV-----VSDWRPVE 202
Query: 884 L-------------EVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQT 930
L + I YP + ++++ K K L+FV++RR
Sbjct: 203 LRKGVFHLGQLFWEDGKIDHYPENWESLVLDAVKK-----------GKQALVFVNTRRSA 251
Query: 931 RLTALDLIQFAASDETPRQFLGMPE-EDLQMVLSQVTD----QNLRQTLQFGIGLHHAGL 985
A+ L + + L PE L+ ++S + D + L++ L+ G+ HHAGL
Sbjct: 252 EKEAISLSSKVS------KLLTKPETRRLEELISSIEDNPTTEKLKRALKGGVAFHHAGL 305
Query: 986 NDKDRSLVEELFANNKIQVLVCTSTL 1011
+ +R+L+E+ F N I+V+ T TL
Sbjct: 306 SRAERTLIEDAFRNGLIKVITATPTL 331
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 26/186 (13%)
Query: 1014 GVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL--VHEPK 1071
G+NLPA VII+ T+ Y + D P+ +I QMMGRAGRP+YD+ G+A+I+ +PK
Sbjct: 737 GINLPAFRVIIRDTKRYANFG--WTDIPVLEIQQMMGRAGRPKYDKVGEAIIVARTEDPK 794
Query: 1072 KSFYKKFLYEPFPVESSLRDQLHDHFNAEIVS-GTIFHKED---AVHYLSWT-YLFRRLA 1126
K + +P + S L ++ F +++++ T F ED V +LS T Y +R
Sbjct: 795 KLIDRYIHGKPEKLFSMLANE--QAFRSQVLALITNFGVEDFRELVDFLSRTFYAHQRGD 852
Query: 1127 INPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSY 1186
+ Y +D + L++N F D++ E+ G SQ Y+
Sbjct: 853 TSSLEYKAKDI--------VYFLIENEFIDMD-------VENRFIALPFGRRTSQLYIDP 897
Query: 1187 VTVSMF 1192
+T F
Sbjct: 898 LTAKKF 903
Score = 57.4 bits (137), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 83/171 (48%), Gaps = 11/171 (6%)
Query: 9 RIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFA-ARNELLS 67
+I+ LSAT+ N E+A++L + S +RP+ L + + + + + +
Sbjct: 171 QILALSATVGNAEELAEWLDAS------LVVSDWRPVELRKGVFHLGQLFWEDGKIDHYP 224
Query: 68 EICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKK 127
E V+D++++G QA+VFV++R+ K A + L+ + L + +T LI
Sbjct: 225 ENWESLVLDAVKKGKQALVFVNTRRSAEKEA---ISLSSKVSKL-LTKPETRRLEELISS 280
Query: 128 DVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATL 178
+ L V HHAG+ R++R L E F GL+KV+ T TL
Sbjct: 281 IEDNPTTEKLKRALKGGVAFHHAGLSRAERTLIEDAFRNGLIKVITATPTL 331
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%), Gaps = 5/54 (9%)
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIIIT 231
G+NLPA V+I+ T+ Y GW D+ +L+I GRAGRP++D+ GE II+
Sbjct: 737 GINLPAFRVIIRDTKRY--ANFGWTDIPVLEIQQMMGRAGRPKYDKVGEAIIVA 788
>sp|Q8TDG4|HELQ_HUMAN Helicase POLQ-like OS=Homo sapiens GN=HELQ PE=1 SV=2
Length = 1101
Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 124/488 (25%), Positives = 212/488 (43%), Gaps = 86/488 (17%)
Query: 681 EALYNFSH----FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLH-LFNTQSDM 735
E LY + H N +Q + N++ PT GKT+ AE+ ML L + D
Sbjct: 334 EKLYEWQHTCLTLNSVQER---------KNLIYSLPTSGGKTLVAEILMLQELLCCRKD- 383
Query: 736 KVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYT------PDLMALLSADIIIST 789
V+ I P AIV+E+++ +S G E+ +Y P + I+T
Sbjct: 384 -VLMILPYVAIVQEKISG-----LSSFGIELGFFVEEYAGSKGRFPPTKRREKKSLYIAT 437
Query: 790 PEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVSRMRYISSQTERAVRF 848
EK + + + +GL+++DE+H++G RG LE+ ++++ Y S T+
Sbjct: 438 IEKGHSLVNSLIETGRIDSLGLVVVDELHMIGEGSRGATLEMTLAKILYTSKTTQ----I 493
Query: 849 IGLSTALANAGDLADWLGVGEIGLFNFKP-------SVRPVPLEVHIQGYPGKFYCPRMN 901
IG+S L N DL +L E F+P + EV + G + +N
Sbjct: 494 IGMSATLNNVEDLQKFLQ-AEYYTSQFRPVELKEYLKINDTIYEVDSKAENGMTFSRLLN 552
Query: 902 --------SMNKPAYAAICTHS-PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG 952
M+ A+ T P L+F S++ A + +F + +++L
Sbjct: 553 YKYSDTLKKMDPDHLVALVTEVIPNYSCLVFCPSKKNCENVAEMICKFLS-----KEYLK 607
Query: 953 MPEEDLQMV---LSQVTDQNL----RQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVL 1005
E++ V L + + NL ++T+ FG+ HH+GL +R L+EE ++ + +
Sbjct: 608 HKEKEKCEVIKNLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKLLEEAYSTGVLCLF 667
Query: 1006 VCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065
CTSTLA GVNLPA VI++ KR QM+GRAGR D G++++
Sbjct: 668 TCTSTLAAGVNLPARRVILRAPYVAKEFLKR------NQYKQMIGRAGRAGIDTIGESIL 721
Query: 1066 LVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSG--TIF----------HKEDAV 1113
++ E K + + +P + + H E G T+F + +D
Sbjct: 722 ILQEKDKQQVLELITKPL-------ENCYSHLVQEFTKGIQTLFLSLIGLKIATNLDDIY 774
Query: 1114 HYLSWTYL 1121
H+++ T+
Sbjct: 775 HFMNGTFF 782
Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 93/377 (24%), Positives = 169/377 (44%), Gaps = 58/377 (15%)
Query: 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGIS----EPNF 59
T + +I+G+SATL N ++ +FL+ ++ S +RP+ L ++Y+ I+ E +
Sbjct: 487 TSKTTQIIGMSATLNNVEDLQKFLQAE------YYTSQFRPVEL-KEYLKINDTIYEVDS 539
Query: 60 AARNEL-LSEICYKKVVDSLRQ---------------GHQAMVFVHSRKDTVKTAQKLVD 103
A N + S + K D+L++ + +VF S+K+ A+ +
Sbjct: 540 KAENGMTFSRLLNYKYSDTLKKMDPDHLVALVTEVIPNYSCLVFCPSKKNCENVAEMICK 599
Query: 104 LARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFG----LAVGVHHAGMLRSDRGL 159
+ E + + +IK ++ N +L + V HH+G+ +R L
Sbjct: 600 FLSK----EYLKHKEKEKCEVIK-NLKNIGNGNLCPVLKRTIPFGVAYHHSGLTSDERKL 654
Query: 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRP 219
E +S G+L + CT+TLA GVNLPA V+++ Y K R+ + GRAGR
Sbjct: 655 LEEAYSTGVLCLFTCTSTLAAGVNLPARRVILRAP--YVAKEFLKRN-QYKQMIGRAGRA 711
Query: 220 QFDRSGEGIIITSHDKLAYYLRLLTSQLPIES-------QFISSLKDNLNAEVALGTVTN 272
D GE I+I L L+T P+E+ +F ++ + + L TN
Sbjct: 712 GIDTIGESILILQEKDKQQVLELITK--PLENCYSHLVQEFTKGIQTLFLSLIGLKIATN 769
Query: 273 VKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRF 332
+ + ++ T+ ++ K+ L W E+ + L ++ L L K + +
Sbjct: 770 LDDIYHFMNGTFFGVQQKV-LLKEKSLW-EITVESLRYLTEKGL-------LQKDTIYKS 820
Query: 333 DEK-SGNFYCTELGRIA 348
+E+ NF+ T+LGR +
Sbjct: 821 EEEVQYNFHITKLGRAS 837
>sp|Q58524|HELS_METJA Putative ski2-type helicase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=MJ1124 PE=3 SV=1
Length = 1195
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 162/328 (49%), Gaps = 24/328 (7%)
Query: 700 LYHTDNNVLLGAPTGSGKTISAELAML-HLFNTQ---SDMKVVYIAPLKAIVRERMNDWK 755
L + N L+ PT SGKT+ E+A++ HL + ++ K ++I PLKA+ E+ ++K
Sbjct: 28 LLDKNKNFLISIPTASGKTLIGEMALINHLLDGNKNPTNKKGIFIVPLKALASEKYEEFK 87
Query: 756 DRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILD 815
+ + G + GDY D L +II+T EK D + R H +++ V ++++D
Sbjct: 88 SKY-ERYGLRIALSIGDYDED-EDLSKYHLIITTAEKLDSLWR--HKIDWINDVSVVVVD 143
Query: 816 EIHLLGAE-RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFN 874
EIHL+ E RG LE+++++++ E V+ IGLS + N +LA+WL E+ + +
Sbjct: 144 EIHLINDETRGGTLEILLTKLK------EFNVQIIGLSATIGNPDELAEWLN-AELIVDD 196
Query: 875 FKPS--VRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQ--T 930
++P + + I+ G+ + N + L+F +++R
Sbjct: 197 WRPVELKKGIYKNEAIEFINGEIREIKAVDNNDIYNLVVDCVKEGGCCLVFCNTKRNAVN 256
Query: 931 RLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTD--QNLRQTLQFGIGLHHAGLNDK 988
L+L +F +E R L E++ +L T+ + L + + G HHAGL +
Sbjct: 257 EAKKLNLKKFLTEEEKIR--LKEIAEEILSILEPPTEMCKTLAECILNGSAFHHAGLTYQ 314
Query: 989 DRSLVEELFANNKIQVLVCTSTLAWGVN 1016
R +VE+ F I+V+ CT TL N
Sbjct: 315 HRKIVEDAFRKRLIKVICCTPTLCLNAN 342
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 91/193 (47%), Gaps = 36/193 (18%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPL--------AQQYIG--ISEP 57
++I+GLSAT+ N E+A++L N E+ + +RP+ L A ++I I E
Sbjct: 169 VQIIGLSATIGNPDELAEWL--NAELIV----DDWRPVELKKGIYKNEAIEFINGEIREI 222
Query: 58 NFAARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVF-NN 116
N++ Y VVD +++G +VF +++++ V A+KL +L+ F
Sbjct: 223 KAVDNNDI-----YNLVVDCVKEGGCCLVFCNTKRNAVNEAKKL--------NLKKFLTE 269
Query: 117 DTHPQLSLIKKDVMK------SRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLK 170
+ +L I ++++ K L E HHAG+ R + E F + L+K
Sbjct: 270 EEKIRLKEIAEEILSILEPPTEMCKTLAECILNGSAFHHAGLTYQHRKIVEDAFRKRLIK 329
Query: 171 VLVCTATLAWGVN 183
V+ CT TL N
Sbjct: 330 VICCTPTLCLNAN 342
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 13/145 (8%)
Query: 1014 GVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073
G+NLP I+K + K RY+ PI +I Q +GRAGRP D +G+ +I+ +
Sbjct: 841 GLNLPCRRAIVKDLTRFTNKGMRYI--PIMEIQQCIGRAGRPGLDPYGEGIIVAKNDRDY 898
Query: 1074 F--YKKFLYEPFPVESSLRDQ--LHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINP 1129
Y+ +P P+ S L +Q L I +G I + D L W F R
Sbjct: 899 LRAYQALTQKPEPIYSKLSNQAVLRTQLLGLIATGEIRDEYD----LEW---FIRNTFYA 951
Query: 1130 AYYGLEDTEAEGLSSYLSRLVQNTF 1154
YG A+ ++ + L +N F
Sbjct: 952 HQYGNLREVAKNINEVIRFLEENEF 976
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 9/99 (9%)
Query: 181 GVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDI---FGRAGRPQFDRSGEGIIITSHDK-- 235
G+NLP ++K + K G R + +++I GRAGRP D GEGII+ +D+
Sbjct: 841 GLNLPCRRAIVKDLTRFTNK--GMRYIPIMEIQQCIGRAGRPGLDPYGEGIIVAKNDRDY 898
Query: 236 LAYYLRLLTSQLPIESQFISS--LKDNLNAEVALGTVTN 272
L Y L PI S+ + L+ L +A G + +
Sbjct: 899 LRAYQALTQKPEPIYSKLSNQAVLRTQLLGLIATGEIRD 937
>sp|Q58796|Y1401_METJA Probable ATP-dependent helicase MJ1401 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1401 PE=3 SV=1
Length = 808
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 108/394 (27%), Positives = 175/394 (44%), Gaps = 73/394 (18%)
Query: 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRER 750
P+QT +++L+ + T SGKT+ ELA + ++ K +++ PL A+ ++
Sbjct: 214 PVQTLSVKAGLLNGDDLLIISATSSGKTLIGELAGIKNL-IKTGKKFLFLVPLVALANQK 272
Query: 751 MNDWKDRLVSQLGKEMVEMTG----DYTPDLMALLSADIIISTPEKWDGISRNWHSRNYV 806
++K+R +LG ++ G D+ L ADII+ T E D + R +
Sbjct: 273 YLEFKERY-EKLGFKVSLRVGLGRIGKKVDVETSLDADIIVGTYEGIDYLIRTKR----L 327
Query: 807 KKVGLMILDEIHLLG-AERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWL 865
K +G +++DEIH L ERG L+ ++ R+R++ + ++ I LS + N +LA L
Sbjct: 328 KDIGTVVIDEIHSLNLEERGARLDGLIGRLRFLFKEAQK----IYLSATIGNPKELAKQL 383
Query: 866 GVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMN---KPAYAAICTHSPTKPVLI 922
++ L+N RPVPLE HI F ++N + K + I LI
Sbjct: 384 N-AKLVLYNG----RPVPLERHIIFCKNDF--AKLNIIKEIVKREWQNISKFGYRGQCLI 436
Query: 923 FVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHH 982
F SR++ A L + G+ E +H
Sbjct: 437 FTYSRKRAEYLAKAL-----------KSKGIKAE-----------------------FYH 462
Query: 983 AGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIK----GTEYYDGKTKRYV 1038
G+ R VE+ FAN KIQ +V T+ L+ GV+ PA VI++ G ++ +
Sbjct: 463 GGMEYIKRRKVEDDFANQKIQCVVTTAALSAGVDFPASTVILESLAMGADWLNP------ 516
Query: 1039 DFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072
+ QM GRAGR + GK +LV KK
Sbjct: 517 ----AEFQQMCGRAGRKGMHEIGKVYLLVEIGKK 546
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 52/217 (23%)
Query: 13 LSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYK 72
LSAT+ N E+A+ ++N ++ L+ + RP+PL +++I + +FA N ++ EI +
Sbjct: 369 LSATIGNPKELAK--QLNAKLVLY----NGRPVPL-ERHIIFCKNDFAKLN-IIKEIVKR 420
Query: 73 KVVDSLRQGH--QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVM 130
+ + + G+ Q ++F +SRK A+ L
Sbjct: 421 EWQNISKFGYRGQCLIFTYSRKRAEYLAKAL----------------------------- 451
Query: 131 KSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVV 190
KS+ G+ +H GM R E F+ ++ +V TA L+ GV+ PA TV+
Sbjct: 452 KSK--------GIKAEFYHGGMEYIKRRKVEDDFANQKIQCVVTTAALSAGVDFPASTVI 503
Query: 191 IKGTQLYDPKAGGWRDLGML-DIFGRAGRPQFDRSGE 226
++ + W + + GRAGR G+
Sbjct: 504 LESLAM----GADWLNPAEFQQMCGRAGRKGMHEIGK 536
>sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1
Length = 1026
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 109/437 (24%), Positives = 184/437 (42%), Gaps = 85/437 (19%)
Query: 687 SHFNPIQTQIFH--ILYHTDNN--VLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742
+ + P Q F + DNN VL+ A T +GKT+ A A+ + +V+Y +P
Sbjct: 119 AKYYPFQLDAFQKQAILCIDNNQSVLVSAHTSAGKTVVATYAIAKCLREKQ--RVIYTSP 176
Query: 743 LKAIVRERMNDWKDRLVSQLGKEMVEMTGDYT--PDLMALLSADIIISTPEKWDGISRNW 800
+KA+ ++ + ++ K++ MTGD T PD L+ I+ S +
Sbjct: 177 IKALSNQKYRELEEEF-----KDVGLMTGDVTLNPDASCLVMTTEILR--------SMLY 223
Query: 801 HSRNYVKKVGLMILDEIHLL-GAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAG 859
+K+VG ++ DEIH + ERG + E + M + ++ LS + NA
Sbjct: 224 RGSEIMKEVGWVVYDEIHYMRDKERGVVWEETIILM-------SKNIKQAFLSATIPNAR 276
Query: 860 DLADWLG-VGEIGLFNFKPSVRPVPLEVHIQGYP-------------GKFYCPRM-NSMN 904
A W+ + + + RP PL+ I YP G+F + ++M+
Sbjct: 277 QFAQWVASIKQQPVNVVYTDYRPTPLQHWI--YPVGGEGMYEVVNVKGEFREDKFRDAMS 334
Query: 905 KPAYAAICTHSPTK--------------------------PVLIFVSSRRQTRLTALDLI 938
A A S K ++F SR++ A+ L
Sbjct: 335 GLATAGDSAGSFNKRRTGGGTQGDSNVLKIIRSVASNDGLNCIVFSFSRKECESYAISLK 394
Query: 939 QFAASDETPRQFLGMPEEDLQMVLSQVT--DQNLRQTLQF------GIGLHHAGLNDKDR 990
+ + + GM + + ++Q++ DQ L Q L GIG+HH+GL +
Sbjct: 395 DMDFNKDHEK---GMVKSVYESAIAQLSPEDQKLPQILNILPLLRRGIGVHHSGLMPILK 451
Query: 991 SLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMG 1050
+E LF ++VL T T + G+N+PA V+ +DG RY+ + +QM G
Sbjct: 452 ETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGSDNRYI--TSGEYIQMAG 509
Query: 1051 RAGRPQYDQHGKAVILV 1067
RAGR D G +++V
Sbjct: 510 RAGRRGKDDRGTVILMV 526
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 117/299 (39%), Gaps = 64/299 (21%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYI--------------- 52
I+ LSAT+PN + AQ++ + + + YRP PL Q +I
Sbjct: 263 IKQAFLSATIPNARQFAQWVASIKQQPVNVVYTDYRPTPL-QHWIYPVGGEGMYEVVNVK 321
Query: 53 ------------------GISEPNFAARNELLSEICYKKVVDSLRQ-----GHQAMVFVH 89
G S +F R V+ +R G +VF
Sbjct: 322 GEFREDKFRDAMSGLATAGDSAGSFNKRRTGGGTQGDSNVLKIIRSVASNDGLNCIVFSF 381
Query: 90 SRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQL----------SLIKKDVMKSRNKDLIE 139
SRK+ A L D+ FN D + L +D + +++
Sbjct: 382 SRKECESYAISLKDMD--------FNKDHEKGMVKSVYESAIAQLSPEDQKLPQILNILP 433
Query: 140 LFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDP 199
L +GVHH+G++ + E LF EGL+KVL T T + G+N+PA TVV + +D
Sbjct: 434 LLRRGIGVHHSGLMPILKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDG 493
Query: 200 KAGGWRDLG-MLDIFGRAGRPQFDRSGEGIIIT----SHDKLAYYLRLLTSQLPIESQF 253
+ G + + GRAGR D G I++ S D ++ T P+ SQF
Sbjct: 494 SDNRYITSGEYIQMAGRAGRRGKDDRGTVILMVDSAMSADDAKQIIKGATD--PLNSQF 550
>sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1
Length = 1030
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 96/409 (23%), Positives = 182/409 (44%), Gaps = 70/409 (17%)
Query: 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765
+VL+ A T +GKT+ AE A+ + +V+Y +P+K++ ++ + L+S+ G +
Sbjct: 142 SVLVSAHTSAGKTVIAEYAIAQALKNRQ--RVIYTSPIKSLSNQKYRE----LLSEFG-D 194
Query: 766 MVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL-GAER 824
+ MTGD + + SA +I T E + + + + ++ +I DE+H + +R
Sbjct: 195 VGLMTGDVSINP----SASCLIMTTEILRAML--YKNSEIMHEIAWVIFDEVHYMRDKDR 248
Query: 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLG-VGEIGLFNFKPSVRPVP 883
G + E + + A+RFI LS L NA A W+ + + RP P
Sbjct: 249 GVVWEETLILL-------PDAIRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYRPTP 301
Query: 884 LE--VHIQGYPGKFYC----PRMNSMNKPAYAAICTHSPTK------------------- 918
L+ ++ QG G + + + N + HS +
Sbjct: 302 LQHFIYPQGADGIYMLVDEKNKFKTENFKKVLEVLDHSTRQENYSKSSKKVKKSSSLERI 361
Query: 919 ----------PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQ 968
P+++F S+++ + A QF D + + E ++Q++++
Sbjct: 362 INMVLSNRYDPIIVFCFSKKECEINAH---QFGKLDLNDTENKELVTEIFDSAINQLSEE 418
Query: 969 N--------LRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAH 1020
+ +R L GIG+HH+GL + LVE LF +++L T T + G+N+PA
Sbjct: 419 DRGLRQFEEMRSLLLRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPAR 478
Query: 1021 LVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069
V+ + + G R++ + +QM GRAGR D G +++++ +
Sbjct: 479 TVLFTKAQKFSGNNFRWLTS--GEYMQMSGRAGRRGIDTKGLSIVILDQ 525
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 117/270 (43%), Gaps = 57/270 (21%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQ---------QYIGISEPN 58
IR + LSATLPN L+ A+++ + + YRP PL Y+ + E N
Sbjct: 263 IRFIFLSATLPNALQFARWISEIHKQPCHVVYTDYRPTPLQHFIYPQGADGIYMLVDEKN 322
Query: 59 -FAARNELLSEICYKKVVDSLRQG--HQAMVFVHSRKDTVKTAQKLVD--LARRYEDLEV 113
F N +KKV++ L + + + +++++ L+ RY+ + V
Sbjct: 323 KFKTEN-------FKKVLEVLDHSTRQENYSKSSKKVKKSSSLERIINMVLSNRYDPIIV 375
Query: 114 F-------NNDTHPQLSLIKKDVMKSRNKDLI-ELFGLAV-------------------- 145
F + H K D+ + NK+L+ E+F A+
Sbjct: 376 FCFSKKECEINAH---QFGKLDLNDTENKELVTEIFDSAINQLSEEDRGLRQFEEMRSLL 432
Query: 146 ----GVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKA 201
G+HH+G+L + L E LF EGL+++L T T + G+N+PA TV+ Q +
Sbjct: 433 LRGIGIHHSGLLPILKELVEILFQEGLVRILFATETFSIGLNMPARTVLFTKAQKFSGNN 492
Query: 202 GGWRDLG-MLDIFGRAGRPQFDRSGEGIII 230
W G + + GRAGR D G I+I
Sbjct: 493 FRWLTSGEYMQMSGRAGRRGIDTKGLSIVI 522
>sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3
Length = 1246
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 113/435 (25%), Positives = 183/435 (42%), Gaps = 97/435 (22%)
Query: 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWK 755
I H+ H ++V + A T +GKT+ AE A+ + + +Y +P+KA+ ++ D++
Sbjct: 319 ILHLERH--DSVFVAAHTSAGKTVVAEYAIA--LAQKHMTRTIYTSPIKALSNQKFRDFR 374
Query: 756 DRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRN--WHSRNYVKKVGLMI 813
+ G T D+ A +I T E I R+ + + ++ + +I
Sbjct: 375 NTFGD---------VGLLTGDVQLHPEASCLIMTTE----ILRSMLYSGSDVIRDLEWVI 421
Query: 814 LDEIHLLG-AERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLG-VGEIG 871
DE+H + ERG + E ++ + V I LS + NA + ADW+G +
Sbjct: 422 FDEVHYINDVERGVVWEEVLIML-------PDHVSIILLSATVPNALEFADWIGRLKRRQ 474
Query: 872 LFNFKPSVRPVPLE------------------------VHIQGYPGKFYCP--RMNSMNK 905
++ RPVPLE H +GY RM+ +
Sbjct: 475 IYVISTVTRPVPLEHYLFTGNSSKTQGELFLLLDSRGAFHTKGYYAAVEAKKERMSKHAQ 534
Query: 906 PAYAAICTH--SPTK------------------PVLIFVSSR-----RQTRLTALDLIQF 940
A TH P + PV++F SR + + LT+LDL
Sbjct: 535 TFGAKQPTHQGGPAQDRGVYLSLLASLRTRAQLPVVVFTFSRGRCDEQASGLTSLDLTTS 594
Query: 941 AASDETPRQFLGMPEEDLQMVLSQV--TDQNLRQTLQF------GIGLHHAGLNDKDRSL 992
+ E FL Q L+++ +D+ L Q L G+G+HH+G+ + +
Sbjct: 595 SEKSEI-HLFL-------QRCLARLRGSDRQLPQVLHMSELLNRGLGVHHSGILPILKEI 646
Query: 993 VEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRA 1052
VE LF+ ++VL T T A GVN+PA V+ +DG T R D + +QM GRA
Sbjct: 647 VEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFR--DLLPGEYVQMAGRA 704
Query: 1053 GRPQYDQHGKAVILV 1067
GR D G ++L
Sbjct: 705 GRRGLDPTGTVILLC 719
Score = 71.2 bits (173), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 76/279 (27%), Positives = 116/279 (41%), Gaps = 64/279 (22%)
Query: 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQ-YIGISEPN-------- 58
+ I+ LSAT+PN LE A ++ ++ + RP+PL + G S
Sbjct: 448 VSIILLSATVPNALEFADWIGRLKRRQIYVISTVTRPVPLEHYLFTGNSSKTQGELFLLL 507
Query: 59 --------------FAARNELLSEIC--------------------YKKVVDSLRQGHQ- 83
A+ E +S+ Y ++ SLR Q
Sbjct: 508 DSRGAFHTKGYYAAVEAKKERMSKHAQTFGAKQPTHQGGPAQDRGVYLSLLASLRTRAQL 567
Query: 84 -AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKD------ 136
+VF SR + A L L DL + + L +++ + + R D
Sbjct: 568 PVVVFTFSRGRCDEQASGLTSL-----DLTTSSEKSEIHL-FLQRCLARLRGSDRQLPQV 621
Query: 137 --LIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGT 194
+ EL +GVHH+G+L + + E LFS GL+KVL T T A GVN+PA TVV
Sbjct: 622 LHMSELLNRGLGVHHSGILPILKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSM 681
Query: 195 QLYDPKAGGWRDL---GMLDIFGRAGRPQFDRSGEGIII 230
+ +D +RDL + + GRAGR D +G I++
Sbjct: 682 RKHD--GSTFRDLLPGEYVQMAGRAGRRGLDPTGTVILL 718
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 541,129,985
Number of Sequences: 539616
Number of extensions: 23180135
Number of successful extensions: 58707
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 107
Number of HSP's that attempted gapping in prelim test: 57662
Number of HSP's gapped (non-prelim): 543
length of query: 1492
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1361
effective length of database: 120,879,763
effective search space: 164517357443
effective search space used: 164517357443
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 68 (30.8 bits)