Query 043190
Match_columns 1492
No_of_seqs 867 out of 6527
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 13:50:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043190.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/043190hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0951 RNA helicase BRR2, DEA 100.0 5E-187 1E-191 1650.4 72.2 1147 2-1198 469-1619(1674)
2 KOG0952 DNA/RNA helicase MER3/ 100.0 3E-146 7E-151 1292.0 46.4 957 1-992 269-1228(1230)
3 KOG0951 RNA helicase BRR2, DEA 100.0 1E-103 3E-108 937.5 56.5 792 677-1485 298-1106(1674)
4 KOG0952 DNA/RNA helicase MER3/ 100.0 8E-103 2E-107 924.1 52.5 791 653-1485 77-890 (1230)
5 PRK02362 ski2-like helicase; P 100.0 7E-86 1.5E-90 848.7 60.4 652 685-1374 20-706 (737)
6 PRK00254 ski2-like helicase; P 100.0 7.3E-82 1.6E-86 809.4 58.6 643 685-1373 20-700 (720)
7 PRK01172 ski2-like helicase; P 100.0 7.8E-78 1.7E-82 770.3 59.9 635 685-1373 20-667 (674)
8 COG1204 Superfamily II helicas 100.0 8.7E-69 1.9E-73 667.2 38.6 642 685-1350 28-705 (766)
9 PRK02362 ski2-like helicase; P 100.0 6.9E-65 1.5E-69 654.1 44.9 505 5-543 169-706 (737)
10 PRK00254 ski2-like helicase; P 100.0 2.3E-61 5E-66 619.9 43.6 503 4-541 166-699 (720)
11 PRK01172 ski2-like helicase; P 100.0 1.9E-59 4.1E-64 600.7 42.5 488 5-543 167-668 (674)
12 COG1204 Superfamily II helicas 100.0 5.9E-57 1.3E-61 561.4 18.2 549 7-603 180-762 (766)
13 COG1202 Superfamily II helicas 100.0 1.3E-50 2.8E-55 450.9 36.2 544 685-1311 213-827 (830)
14 PF02889 Sec63: Sec63 Brl doma 100.0 3.7E-48 8.1E-53 453.0 31.2 305 1172-1485 1-314 (314)
15 smart00611 SEC63 Domain of unk 100.0 2.2E-47 4.7E-52 445.2 35.1 302 1170-1485 2-311 (312)
16 smart00611 SEC63 Domain of unk 100.0 3.5E-47 7.5E-52 443.5 31.6 307 339-649 2-311 (312)
17 PF02889 Sec63: Sec63 Brl doma 100.0 2.3E-45 5E-50 429.5 28.8 306 341-649 1-314 (314)
18 KOG0330 ATP-dependent RNA heli 100.0 1.5E-44 3.3E-49 386.6 24.8 337 675-1078 68-415 (476)
19 TIGR03817 DECH_helic helicase/ 100.0 1.2E-42 2.7E-47 440.7 39.4 341 685-1070 33-386 (742)
20 PRK13767 ATP-dependent helicas 100.0 9.8E-43 2.1E-47 451.1 38.2 396 685-1126 29-461 (876)
21 KOG0950 DNA polymerase theta/e 100.0 1.1E-42 2.4E-47 413.3 35.1 651 682-1360 217-934 (1008)
22 KOG0331 ATP-dependent RNA heli 100.0 1.7E-43 3.7E-48 408.6 26.3 327 685-1074 110-452 (519)
23 COG1201 Lhr Lhr-like helicases 100.0 2.7E-42 5.8E-47 421.7 35.4 406 685-1166 19-447 (814)
24 KOG0338 ATP-dependent RNA heli 100.0 6E-42 1.3E-46 377.0 25.5 356 675-1091 188-554 (691)
25 PLN00206 DEAD-box ATP-dependen 100.0 7.2E-41 1.6E-45 413.3 32.2 340 675-1079 128-484 (518)
26 PRK10590 ATP-dependent RNA hel 100.0 2.7E-40 6E-45 403.9 33.9 335 677-1076 10-358 (456)
27 PTZ00110 helicase; Provisional 100.0 1.3E-40 2.8E-45 411.5 30.1 340 675-1078 137-492 (545)
28 KOG0333 U5 snRNP-like RNA heli 100.0 2.3E-40 4.9E-45 366.5 28.3 376 636-1077 222-631 (673)
29 PRK11776 ATP-dependent RNA hel 100.0 4.6E-40 1E-44 404.5 33.8 326 685-1075 23-354 (460)
30 PRK04837 ATP-dependent RNA hel 100.0 3.2E-40 6.9E-45 401.4 31.5 337 675-1076 15-368 (423)
31 COG0513 SrmB Superfamily II DN 100.0 5.1E-40 1.1E-44 401.8 32.5 336 675-1075 36-386 (513)
32 PRK04537 ATP-dependent RNA hel 100.0 7.9E-40 1.7E-44 405.5 33.6 336 676-1074 17-368 (572)
33 KOG0340 ATP-dependent RNA heli 100.0 2.9E-40 6.3E-45 349.6 23.4 344 673-1077 12-368 (442)
34 KOG0345 ATP-dependent RNA heli 100.0 9.2E-40 2E-44 358.1 27.5 344 675-1080 13-373 (567)
35 PRK09751 putative ATP-dependen 100.0 3.7E-39 8.1E-44 419.4 37.0 395 709-1125 1-447 (1490)
36 PRK11192 ATP-dependent RNA hel 100.0 3.7E-39 7.9E-44 394.4 34.0 328 685-1077 20-359 (434)
37 PRK01297 ATP-dependent RNA hel 100.0 4.1E-39 9E-44 396.8 34.1 325 684-1072 105-444 (475)
38 PRK11634 ATP-dependent RNA hel 100.0 4.8E-39 1E-43 399.9 34.6 339 675-1077 13-359 (629)
39 PLN03137 ATP-dependent DNA hel 100.0 3.1E-39 6.6E-44 401.1 30.8 335 678-1081 450-798 (1195)
40 TIGR00614 recQ_fam ATP-depende 100.0 5.9E-39 1.3E-43 393.2 32.7 333 680-1081 3-344 (470)
41 KOG0328 Predicted ATP-dependen 100.0 1.3E-39 2.8E-44 333.0 21.1 344 670-1078 29-381 (400)
42 PTZ00424 helicase 45; Provisio 100.0 1.3E-38 2.8E-43 387.6 32.4 340 675-1078 35-382 (401)
43 KOG0326 ATP-dependent RNA heli 100.0 5.7E-40 1.2E-44 341.1 17.4 333 675-1076 92-435 (459)
44 KOG0342 ATP-dependent RNA heli 100.0 5.2E-39 1.1E-43 355.5 25.8 342 678-1078 92-445 (543)
45 KOG0947 Cytoplasmic exosomal R 100.0 8.1E-39 1.8E-43 375.6 27.2 385 684-1095 294-751 (1248)
46 KOG0348 ATP-dependent RNA heli 100.0 1.1E-38 2.5E-43 353.5 23.9 373 681-1081 152-564 (708)
47 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1.3E-37 2.9E-42 392.8 36.2 418 696-1208 10-437 (819)
48 KOG0343 RNA Helicase [RNA proc 100.0 1.3E-38 2.7E-43 354.0 21.5 338 685-1087 88-440 (758)
49 PRK11664 ATP-dependent RNA hel 100.0 2.1E-37 4.5E-42 392.6 35.3 412 696-1199 13-432 (812)
50 KOG0950 DNA polymerase theta/e 100.0 2E-38 4.3E-43 377.3 21.0 501 8-528 378-934 (1008)
51 PRK11057 ATP-dependent DNA hel 100.0 5.8E-37 1.2E-41 384.7 32.6 336 672-1082 9-355 (607)
52 TIGR01389 recQ ATP-dependent D 100.0 7.3E-37 1.6E-41 386.3 33.3 334 678-1084 3-345 (591)
53 KOG0336 ATP-dependent RNA heli 100.0 1.1E-37 2.3E-42 333.9 20.5 331 685-1079 239-581 (629)
54 KOG0948 Nuclear exosomal RNA h 100.0 3.2E-38 7E-43 361.5 17.6 394 684-1104 126-575 (1041)
55 KOG0335 ATP-dependent RNA heli 100.0 2.5E-37 5.4E-42 350.5 24.3 325 685-1073 93-447 (482)
56 KOG0339 ATP-dependent RNA heli 100.0 2.4E-37 5.2E-42 340.0 22.9 341 677-1080 232-585 (731)
57 COG4581 Superfamily II RNA hel 100.0 4.6E-36 1E-40 371.0 28.2 388 684-1098 116-568 (1041)
58 KOG4434 Molecular chaperone SE 100.0 8.1E-36 1.8E-40 313.4 24.4 292 1197-1490 8-482 (520)
59 KOG0922 DEAH-box RNA helicase 100.0 1.2E-34 2.6E-39 334.9 33.0 441 696-1225 59-508 (674)
60 KOG0347 RNA helicase [RNA proc 100.0 3.6E-36 7.7E-41 334.7 18.6 346 675-1079 188-579 (731)
61 PRK11131 ATP-dependent RNA hel 100.0 2.6E-34 5.6E-39 367.3 37.9 441 696-1226 82-534 (1294)
62 KOG0341 DEAD-box protein abstr 100.0 1.2E-36 2.6E-41 323.6 12.1 318 685-1072 189-530 (610)
63 KOG0923 mRNA splicing factor A 100.0 6.4E-35 1.4E-39 330.8 26.2 457 690-1231 267-731 (902)
64 KOG0350 DEAD-box ATP-dependent 100.0 2.6E-35 5.7E-40 325.0 21.9 349 685-1081 156-551 (620)
65 KOG0332 ATP-dependent RNA heli 100.0 9.8E-35 2.1E-39 309.4 22.4 354 662-1072 84-445 (477)
66 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.8E-33 3.8E-38 361.5 38.1 441 696-1225 74-524 (1283)
67 KOG0924 mRNA splicing factor A 100.0 1.1E-33 2.5E-38 320.6 30.4 456 691-1232 359-822 (1042)
68 COG0514 RecQ Superfamily II DN 100.0 6.3E-34 1.4E-38 336.1 27.0 332 678-1084 7-351 (590)
69 COG1643 HrpA HrpA-like helicas 100.0 2.6E-33 5.6E-38 346.3 31.7 424 698-1212 59-493 (845)
70 TIGR00580 mfd transcription-re 100.0 2.2E-33 4.8E-38 358.1 31.6 314 679-1070 443-770 (926)
71 KOG0346 RNA helicase [RNA proc 100.0 1.9E-33 4.2E-38 305.4 22.3 335 675-1073 26-413 (569)
72 PRK10917 ATP-dependent DNA hel 100.0 1E-32 2.2E-37 349.9 32.2 319 682-1070 256-589 (681)
73 TIGR00643 recG ATP-dependent D 100.0 1.3E-32 2.8E-37 347.0 31.2 319 684-1069 232-565 (630)
74 PHA02653 RNA helicase NPH-II; 100.0 3.4E-32 7.4E-37 335.5 33.9 397 691-1193 167-591 (675)
75 KOG0334 RNA helicase [RNA proc 100.0 4E-33 8.8E-38 337.4 23.2 328 684-1072 383-722 (997)
76 COG1202 Superfamily II helicas 100.0 3.2E-32 6.9E-37 304.5 28.1 395 6-482 371-829 (830)
77 PRK10689 transcription-repair 100.0 2.9E-32 6.2E-37 355.5 31.9 315 679-1070 592-919 (1147)
78 KOG0344 ATP-dependent RNA heli 100.0 1.1E-32 2.4E-37 313.5 20.5 331 685-1075 155-500 (593)
79 COG1205 Distinct helicase fami 100.0 1.1E-31 2.5E-36 340.4 30.2 345 685-1069 67-421 (851)
80 KOG4284 DEAD box protein [Tran 100.0 1.5E-32 3.3E-37 309.9 18.8 330 685-1072 44-381 (980)
81 KOG0327 Translation initiation 100.0 1E-31 2.2E-36 290.8 21.5 340 673-1079 31-379 (397)
82 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9.4E-31 2E-35 322.7 30.3 326 679-1066 7-388 (844)
83 TIGR01587 cas3_core CRISPR-ass 100.0 3.4E-31 7.3E-36 316.7 25.6 303 706-1071 1-337 (358)
84 COG1111 MPH1 ERCC4-like helica 100.0 2.3E-30 5.1E-35 289.9 27.7 336 686-1071 13-482 (542)
85 TIGR03158 cas3_cyano CRISPR-as 100.0 6E-30 1.3E-34 300.8 27.1 300 692-1053 1-357 (357)
86 KOG0926 DEAH-box RNA helicase 100.0 5.4E-30 1.2E-34 295.8 22.8 448 696-1199 264-798 (1172)
87 KOG0352 ATP-dependent DNA heli 100.0 2.5E-30 5.4E-35 279.2 18.5 334 678-1080 9-372 (641)
88 KOG0337 ATP-dependent RNA heli 100.0 6E-31 1.3E-35 284.9 13.3 336 674-1077 27-375 (529)
89 KOG0948 Nuclear exosomal RNA h 100.0 4.7E-30 1E-34 294.9 18.9 257 4-266 263-573 (1041)
90 KOG0947 Cytoplasmic exosomal R 100.0 1.3E-29 2.8E-34 298.6 22.8 269 4-284 431-771 (1248)
91 KOG0920 ATP-dependent RNA heli 100.0 5.8E-29 1.2E-33 305.2 25.5 431 690-1200 175-641 (924)
92 KOG0351 ATP-dependent DNA heli 100.0 4.6E-29 9.9E-34 312.7 22.4 337 678-1082 254-604 (941)
93 KOG0354 DEAD-box like helicase 100.0 3.3E-28 7.1E-33 290.1 27.4 338 686-1071 60-530 (746)
94 PHA02558 uvsW UvsW helicase; P 100.0 1.2E-27 2.7E-32 294.5 27.3 312 687-1066 113-449 (501)
95 KOG0925 mRNA splicing factor A 100.0 5.2E-27 1.1E-31 257.9 22.3 437 692-1223 50-503 (699)
96 PRK14701 reverse gyrase; Provi 100.0 5.6E-27 1.2E-31 312.5 26.4 335 679-1081 71-467 (1638)
97 KOG0353 ATP-dependent DNA heli 99.9 3.3E-27 7.1E-32 250.7 18.3 336 668-1072 74-469 (695)
98 TIGR00603 rad25 DNA repair hel 99.9 4.8E-26 1E-30 278.7 27.2 317 688-1074 255-611 (732)
99 COG1200 RecG RecG-like helicas 99.9 1.2E-25 2.5E-30 264.2 28.7 318 685-1071 260-592 (677)
100 PRK05580 primosome assembly pr 99.9 4.8E-26 1.1E-30 287.3 27.6 359 688-1078 144-557 (679)
101 PRK12898 secA preprotein trans 99.9 1.6E-25 3.5E-30 271.1 27.9 323 685-1071 101-587 (656)
102 KOG0949 Predicted helicase, DE 99.9 6.9E-26 1.5E-30 267.6 23.9 362 689-1069 512-1047(1330)
103 PRK09694 helicase Cas3; Provis 99.9 2.9E-25 6.2E-30 280.5 31.1 322 683-1057 281-664 (878)
104 PRK09200 preprotein translocas 99.9 1.5E-25 3.3E-30 277.3 27.7 331 685-1071 76-542 (790)
105 PRK09401 reverse gyrase; Revie 99.9 1.4E-25 3E-30 293.9 28.7 304 681-1054 74-430 (1176)
106 PRK13766 Hef nuclease; Provisi 99.9 2.5E-25 5.5E-30 292.0 31.2 325 688-1071 15-480 (773)
107 TIGR03714 secA2 accessory Sec 99.9 3.3E-25 7.2E-30 271.1 28.8 321 689-1071 69-538 (762)
108 TIGR00595 priA primosomal prot 99.9 1.2E-24 2.6E-29 264.8 27.5 336 708-1078 1-389 (505)
109 TIGR00963 secA preprotein tran 99.9 1.1E-24 2.3E-29 264.6 26.8 322 685-1071 54-518 (745)
110 COG4581 Superfamily II RNA hel 99.9 1.1E-25 2.3E-30 279.6 17.2 271 4-285 257-587 (1041)
111 KOG0329 ATP-dependent RNA heli 99.9 1.2E-25 2.6E-30 227.3 12.2 303 675-1074 49-359 (387)
112 COG4098 comFA Superfamily II D 99.9 3.6E-23 7.8E-28 219.5 28.0 315 688-1073 97-419 (441)
113 COG1197 Mfd Transcription-repa 99.9 1.9E-23 4E-28 259.3 29.4 317 678-1071 585-914 (1139)
114 TIGR01054 rgy reverse gyrase. 99.9 1.5E-23 3.3E-28 275.3 28.0 283 687-1034 77-409 (1171)
115 PRK09751 putative ATP-dependen 99.9 2E-23 4.4E-28 273.1 24.3 267 5-289 157-447 (1490)
116 PRK13767 ATP-dependent helicas 99.9 3.3E-23 7.1E-28 269.5 25.5 258 5-328 205-476 (876)
117 KOG0349 Putative DEAD-box RNA 99.9 2.6E-24 5.5E-29 232.8 11.4 291 735-1073 287-618 (725)
118 COG1061 SSL2 DNA or RNA helica 99.9 3.8E-22 8.2E-27 240.4 26.8 297 687-1055 35-376 (442)
119 PRK11131 ATP-dependent RNA hel 99.9 4.1E-22 8.9E-27 256.0 22.4 307 6-396 217-535 (1294)
120 COG1201 Lhr Lhr-like helicases 99.9 1.4E-21 3E-26 240.5 23.9 255 7-334 183-448 (814)
121 TIGR01970 DEAH_box_HrpB ATP-de 99.9 7.7E-22 1.7E-26 250.2 20.4 286 4-380 143-440 (819)
122 PRK13104 secA preprotein trans 99.9 3.1E-21 6.7E-26 237.7 24.6 129 685-820 80-214 (896)
123 TIGR03817 DECH_helic helicase/ 99.9 3.5E-21 7.6E-26 245.3 25.7 194 4-238 191-390 (742)
124 PRK11664 ATP-dependent RNA hel 99.9 2.2E-21 4.8E-26 246.9 19.8 273 4-366 146-430 (812)
125 PRK04914 ATP-dependent helicas 99.9 2.5E-20 5.3E-25 237.4 28.9 339 688-1081 152-617 (956)
126 PRK11448 hsdR type I restricti 99.9 3.7E-20 8.1E-25 241.5 28.0 336 688-1066 413-812 (1123)
127 TIGR01967 DEAH_box_HrpA ATP-de 99.9 8.7E-21 1.9E-25 245.1 21.5 303 6-394 210-524 (1283)
128 PRK12906 secA preprotein trans 99.8 5.1E-20 1.1E-24 226.3 24.9 331 685-1071 78-554 (796)
129 COG1198 PriA Primosomal protei 99.8 4.9E-20 1.1E-24 225.6 24.0 358 688-1081 198-614 (730)
130 PRK12904 preprotein translocas 99.8 1.5E-19 3.2E-24 223.2 26.0 128 685-820 79-213 (830)
131 KOG0922 DEAH-box RNA helicase 99.8 1.3E-19 2.8E-24 211.0 23.2 303 5-395 193-509 (674)
132 COG1203 CRISPR-associated heli 99.8 7.9E-20 1.7E-24 233.6 22.8 324 689-1071 196-551 (733)
133 PRK12899 secA preprotein trans 99.8 3.6E-19 7.7E-24 218.6 26.4 132 685-820 86-227 (970)
134 KOG0328 Predicted ATP-dependen 99.8 2.8E-20 6.2E-25 191.7 14.1 181 4-240 197-379 (400)
135 KOG0923 mRNA splicing factor A 99.8 4.4E-20 9.6E-25 210.9 16.8 311 4-399 407-730 (902)
136 PRK13107 preprotein translocas 99.8 7.8E-19 1.7E-23 215.7 25.5 129 685-820 80-214 (908)
137 PF00270 DEAD: DEAD/DEAH box h 99.8 8.2E-20 1.8E-24 193.8 14.7 158 690-856 1-163 (169)
138 KOG0332 ATP-dependent RNA heli 99.8 2.3E-19 5E-24 192.6 17.8 185 4-237 261-446 (477)
139 cd00268 DEADc DEAD-box helicas 99.8 1.9E-19 4.2E-24 197.0 16.8 162 685-857 18-186 (203)
140 KOG4434 Molecular chaperone SE 99.8 1.6E-18 3.4E-23 183.7 22.4 200 366-566 8-241 (520)
141 KOG0333 U5 snRNP-like RNA heli 99.8 2.6E-19 5.7E-24 200.0 16.7 176 6-240 451-630 (673)
142 PLN00206 DEAD-box ATP-dependen 99.8 2.1E-19 4.6E-24 222.6 17.4 180 6-239 299-480 (518)
143 KOG0330 ATP-dependent RNA heli 99.8 1.3E-19 2.9E-24 195.8 12.9 183 2-241 230-414 (476)
144 PRK11776 ATP-dependent RNA hel 99.8 2.8E-19 6.1E-24 220.4 17.0 179 3-238 174-353 (460)
145 PLN03137 ATP-dependent DNA hel 99.8 3.4E-19 7.4E-24 223.3 17.7 179 6-245 615-798 (1195)
146 TIGR00614 recQ_fam ATP-depende 99.8 8.4E-19 1.8E-23 215.5 20.8 182 6-245 161-344 (470)
147 PRK10590 ATP-dependent RNA hel 99.8 4E-19 8.7E-24 217.7 15.7 178 4-237 177-355 (456)
148 PTZ00424 helicase 45; Provisio 99.8 6.4E-19 1.4E-23 214.7 17.1 183 4-241 198-381 (401)
149 KOG0924 mRNA splicing factor A 99.8 1.3E-18 2.9E-23 198.9 17.8 314 5-403 498-824 (1042)
150 KOG0326 ATP-dependent RNA heli 99.8 3.5E-19 7.6E-24 186.8 11.8 177 4-238 255-433 (459)
151 COG0513 SrmB Superfamily II DN 99.8 7.7E-19 1.7E-23 215.7 16.7 181 3-238 201-385 (513)
152 PRK11057 ATP-dependent DNA hel 99.8 1.5E-18 3.3E-23 218.6 19.6 214 6-284 173-393 (607)
153 KOG0331 ATP-dependent RNA heli 99.8 5.8E-19 1.3E-23 205.5 13.0 181 3-237 266-451 (519)
154 COG1643 HrpA HrpA-like helicas 99.8 1.9E-18 4.2E-23 214.9 18.2 290 5-382 193-494 (845)
155 PTZ00110 helicase; Provisional 99.8 3.3E-18 7.2E-23 212.4 17.4 180 4-237 305-487 (545)
156 PRK04837 ATP-dependent RNA hel 99.8 5.5E-18 1.2E-22 206.6 18.1 114 80-239 254-367 (423)
157 PRK11634 ATP-dependent RNA hel 99.8 5.6E-18 1.2E-22 211.8 18.0 180 3-238 176-356 (629)
158 PRK01297 ATP-dependent RNA hel 99.8 7.5E-18 1.6E-22 208.2 18.5 174 7-236 270-444 (475)
159 PRK04537 ATP-dependent RNA hel 99.8 4.1E-18 8.8E-23 212.1 16.3 173 7-237 192-367 (572)
160 PHA02653 RNA helicase NPH-II; 99.8 1.9E-17 4.2E-22 205.2 21.5 250 8-351 322-584 (675)
161 PRK11192 ATP-dependent RNA hel 99.8 8.3E-18 1.8E-22 206.2 17.3 179 4-240 175-358 (434)
162 TIGR01407 dinG_rel DnaQ family 99.8 3.6E-16 7.7E-21 204.9 33.4 360 685-1084 243-829 (850)
163 TIGR01389 recQ ATP-dependent D 99.7 1.7E-17 3.7E-22 210.3 17.8 182 7-248 162-345 (591)
164 KOG0949 Predicted helicase, DE 99.7 2.5E-17 5.3E-22 196.1 16.5 93 135-233 955-1047(1330)
165 KOG0338 ATP-dependent RNA heli 99.7 7E-18 1.5E-22 187.9 11.2 198 3-253 354-552 (691)
166 COG0514 RecQ Superfamily II DN 99.7 8.7E-17 1.9E-21 191.3 16.9 183 7-248 166-351 (590)
167 KOG0340 ATP-dependent RNA heli 99.7 3.8E-17 8.2E-22 174.8 12.2 183 3-240 180-367 (442)
168 COG4096 HsdR Type I site-speci 99.7 1.5E-15 3.3E-20 181.4 26.1 311 686-1056 163-526 (875)
169 COG5407 SEC63 Preprotein trans 99.7 2.4E-16 5.2E-21 172.3 15.4 280 1183-1491 226-551 (610)
170 TIGR00348 hsdR type I site-spe 99.7 9.9E-16 2.2E-20 194.0 21.0 328 688-1055 238-634 (667)
171 TIGR00580 mfd transcription-re 99.7 4E-16 8.7E-21 200.5 17.5 175 4-234 596-770 (926)
172 KOG4150 Predicted ATP-dependen 99.7 7.4E-16 1.6E-20 172.9 16.1 341 687-1068 285-638 (1034)
173 KOG0342 ATP-dependent RNA heli 99.7 5.9E-16 1.3E-20 173.3 14.8 181 3-239 257-442 (543)
174 PRK07246 bifunctional ATP-depe 99.7 2.7E-14 5.8E-19 183.9 32.3 354 685-1084 243-798 (820)
175 PRK12326 preprotein translocas 99.7 6.5E-15 1.4E-19 177.0 24.5 129 685-820 76-210 (764)
176 KOG0953 Mitochondrial RNA heli 99.7 1.9E-15 4E-20 170.9 18.3 291 705-1081 192-487 (700)
177 PLN03142 Probable chromatin-re 99.6 4.8E-15 1E-19 189.9 22.8 88 974-1071 510-600 (1033)
178 PRK10917 ATP-dependent DNA hel 99.6 2.6E-15 5.6E-20 191.4 19.1 170 6-233 408-588 (681)
179 TIGR00631 uvrb excinuclease AB 99.6 4.1E-14 8.9E-19 176.7 29.2 125 907-1073 431-556 (655)
180 TIGR00643 recG ATP-dependent D 99.6 2.9E-15 6.2E-20 189.9 18.5 123 70-232 437-564 (630)
181 PRK10689 transcription-repair 99.6 1.7E-15 3.7E-20 199.2 16.2 174 4-234 745-919 (1147)
182 KOG0345 ATP-dependent RNA heli 99.6 3.1E-15 6.7E-20 166.1 14.8 189 3-246 184-375 (567)
183 KOG0343 RNA Helicase [RNA proc 99.6 4.2E-15 9.1E-20 167.5 14.9 192 1-246 240-434 (758)
184 PRK12900 secA preprotein trans 99.6 3.1E-14 6.8E-19 176.0 23.5 110 914-1071 595-712 (1025)
185 TIGR01587 cas3_core CRISPR-ass 99.6 5E-15 1.1E-19 177.3 15.3 116 75-235 216-337 (358)
186 PRK13103 secA preprotein trans 99.6 3.1E-14 6.7E-19 175.7 20.9 129 685-820 80-214 (913)
187 KOG0327 Translation initiation 99.6 5.2E-15 1.1E-19 161.7 12.2 181 3-241 196-377 (397)
188 KOG4284 DEAD box protein [Tran 99.6 5.5E-15 1.2E-19 168.9 11.0 182 2-235 194-380 (980)
189 smart00487 DEXDc DEAD-like hel 99.6 3.8E-14 8.1E-19 155.0 17.5 168 685-861 5-176 (201)
190 COG0556 UvrB Helicase subunit 99.6 2.4E-13 5.2E-18 153.9 22.8 122 907-1070 435-557 (663)
191 PRK05298 excinuclease ABC subu 99.6 3.6E-13 7.8E-18 170.1 26.8 115 915-1071 444-558 (652)
192 KOG0925 mRNA splicing factor A 99.6 1.3E-12 2.8E-17 145.5 27.1 297 5-392 189-503 (699)
193 KOG0344 ATP-dependent RNA heli 99.6 7.9E-15 1.7E-19 168.6 10.1 178 5-240 319-501 (593)
194 KOG0335 ATP-dependent RNA heli 99.6 3.2E-14 7E-19 163.1 14.6 175 5-235 260-445 (482)
195 KOG0920 ATP-dependent RNA heli 99.5 2.6E-14 5.6E-19 177.1 13.5 285 5-366 317-638 (924)
196 PRK08074 bifunctional ATP-depe 99.5 1.3E-12 2.8E-17 171.9 30.0 136 916-1084 751-908 (928)
197 KOG0336 ATP-dependent RNA heli 99.5 3.2E-14 6.9E-19 154.4 11.6 183 5-241 396-579 (629)
198 KOG1123 RNA polymerase II tran 99.5 5.8E-14 1.3E-18 156.2 13.3 333 685-1075 299-658 (776)
199 COG1110 Reverse gyrase [DNA re 99.5 8.9E-13 1.9E-17 160.1 24.1 280 685-1028 80-416 (1187)
200 KOG0348 ATP-dependent RNA heli 99.5 9.6E-14 2.1E-18 156.3 13.6 140 81-246 425-565 (708)
201 KOG0921 Dosage compensation co 99.5 1.4E-13 3E-18 163.0 13.9 420 696-1194 386-864 (1282)
202 KOG0350 DEAD-box ATP-dependent 99.5 9.8E-14 2.1E-18 155.3 11.8 189 5-245 358-551 (620)
203 KOG0341 DEAD-box protein abstr 99.5 1.1E-13 2.4E-18 149.2 10.7 116 74-235 413-529 (610)
204 TIGR02621 cas3_GSU0051 CRISPR- 99.5 2.5E-13 5.3E-18 169.3 15.3 95 79-222 270-380 (844)
205 PRK14873 primosome assembly pr 99.5 1.3E-12 2.9E-17 162.6 21.0 327 708-1076 164-544 (665)
206 KOG0351 ATP-dependent DNA heli 99.4 5.6E-13 1.2E-17 168.8 15.4 182 8-246 421-604 (941)
207 KOG0339 ATP-dependent RNA heli 99.4 7.4E-13 1.6E-17 148.0 14.3 181 4-238 398-579 (731)
208 PRK12898 secA preprotein trans 99.4 7.7E-13 1.7E-17 161.5 15.7 168 9-235 410-587 (656)
209 KOG0926 DEAH-box RNA helicase 99.4 1.1E-12 2.3E-17 154.0 16.0 311 6-368 413-798 (1172)
210 PRK12903 secA preprotein trans 99.4 1E-11 2.2E-16 151.8 25.0 129 685-820 76-210 (925)
211 PRK12902 secA preprotein trans 99.4 9.8E-12 2.1E-16 152.6 24.4 129 685-820 83-217 (939)
212 CHL00122 secA preprotein trans 99.4 5.2E-12 1.1E-16 155.6 21.3 129 685-820 74-208 (870)
213 PF04851 ResIII: Type III rest 99.4 7E-13 1.5E-17 142.8 11.8 151 688-856 3-183 (184)
214 cd00046 DEXDc DEAD-like helica 99.4 2.2E-12 4.8E-17 132.2 14.6 141 705-855 1-144 (144)
215 KOG0385 Chromatin remodeling c 99.4 1.3E-11 2.8E-16 145.2 22.1 320 688-1072 167-601 (971)
216 TIGR03117 cas_csf4 CRISPR-asso 99.4 6E-11 1.3E-15 145.6 29.1 56 701-756 13-68 (636)
217 COG4098 comFA Superfamily II D 99.4 3.5E-12 7.5E-17 136.8 15.3 183 7-235 233-417 (441)
218 KOG0334 RNA helicase [RNA proc 99.4 1.7E-12 3.6E-17 159.6 14.7 209 2-268 541-757 (997)
219 COG1205 Distinct helicase fami 99.4 1.3E-12 2.9E-17 167.3 14.4 197 4-240 229-428 (851)
220 TIGR03714 secA2 accessory Sec 99.4 9.7E-12 2.1E-16 153.7 20.8 166 9-235 361-538 (762)
221 KOG0353 ATP-dependent DNA heli 99.4 1.3E-12 2.8E-17 140.2 10.8 182 6-238 249-471 (695)
222 TIGR02562 cas3_yersinia CRISPR 99.4 1.2E-11 2.5E-16 154.2 20.4 161 690-857 410-636 (1110)
223 cd00079 HELICc Helicase superf 99.4 1.6E-12 3.5E-17 131.2 10.0 106 79-230 26-131 (131)
224 PRK09200 preprotein translocas 99.4 5.2E-12 1.1E-16 157.8 16.1 169 9-235 365-542 (790)
225 PRK11747 dinG ATP-dependent DN 99.4 2.4E-10 5.1E-15 145.9 30.5 67 685-753 23-97 (697)
226 COG1111 MPH1 ERCC4-like helica 99.4 2.9E-12 6.4E-17 145.4 11.3 123 80-240 365-489 (542)
227 KOG0352 ATP-dependent DNA heli 99.3 2E-12 4.3E-17 141.6 9.0 186 6-242 175-370 (641)
228 TIGR03158 cas3_cyano CRISPR-as 99.3 6.3E-12 1.4E-16 148.4 13.9 87 80-217 271-357 (357)
229 PF00271 Helicase_C: Helicase 99.3 3E-12 6.6E-17 115.5 8.4 75 972-1056 4-78 (78)
230 COG1199 DinG Rad3-related DNA 99.3 9.1E-11 2E-15 151.8 24.3 72 684-756 11-85 (654)
231 TIGR00631 uvrb excinuclease AB 99.3 6.8E-12 1.5E-16 157.0 13.3 122 71-236 432-555 (655)
232 cd00079 HELICc Helicase superf 99.3 9.5E-12 2E-16 125.6 11.7 105 916-1066 27-131 (131)
233 TIGR00604 rad3 DNA repair heli 99.3 3.2E-10 7E-15 146.3 28.7 75 682-756 4-82 (705)
234 COG4889 Predicted helicase [Ge 99.3 3.4E-12 7.4E-17 150.6 9.4 339 687-1065 160-583 (1518)
235 PF00271 Helicase_C: Helicase 99.3 2.3E-12 4.9E-17 116.3 5.9 73 141-220 6-78 (78)
236 TIGR00963 secA preprotein tran 99.3 8.5E-11 1.8E-15 144.4 19.4 169 9-235 342-518 (745)
237 PHA02558 uvsW UvsW helicase; P 99.3 2.3E-11 5E-16 150.6 14.6 100 78-221 341-441 (501)
238 PRK05298 excinuclease ABC subu 99.3 1.8E-11 3.9E-16 154.9 13.2 120 71-234 436-557 (652)
239 PRK12906 secA preprotein trans 99.3 6.8E-11 1.5E-15 146.6 17.9 250 9-327 377-654 (796)
240 KOG0390 DNA repair protein, SN 99.2 1E-09 2.2E-14 134.6 26.0 361 688-1078 238-717 (776)
241 KOG0347 RNA helicase [RNA proc 99.2 1.5E-11 3.3E-16 139.3 8.8 116 81-242 463-578 (731)
242 KOG0337 ATP-dependent RNA heli 99.2 3.1E-11 6.7E-16 132.8 9.6 183 3-241 191-375 (529)
243 COG1200 RecG RecG-like helicas 99.2 1.5E-10 3.2E-15 137.9 16.1 179 7-235 411-592 (677)
244 PRK09694 helicase Cas3; Provis 99.2 3.3E-10 7.1E-15 144.8 19.8 108 70-221 549-664 (878)
245 TIGR00595 priA primosomal prot 99.2 1.4E-10 3.1E-15 142.0 16.0 213 6-235 128-382 (505)
246 KOG0346 RNA helicase [RNA proc 99.2 1.4E-10 2.9E-15 128.5 13.8 179 3-237 197-413 (569)
247 PRK04914 ATP-dependent helicas 99.1 2.6E-10 5.6E-15 146.6 14.9 106 81-231 493-600 (956)
248 KOG1000 Chromatin remodeling p 99.1 4.5E-09 9.6E-14 118.1 21.4 150 688-856 198-349 (689)
249 KOG0349 Putative DEAD-box RNA 99.1 3E-10 6.5E-15 124.7 10.6 110 81-233 505-614 (725)
250 PRK05580 primosome assembly pr 99.1 9.5E-10 2.1E-14 140.0 16.7 99 136-236 445-551 (679)
251 PRK12900 secA preprotein trans 99.1 9E-10 2E-14 137.2 15.5 169 9-235 535-712 (1025)
252 KOG0354 DEAD-box like helicase 99.1 4.8E-10 1E-14 135.8 12.5 120 80-236 412-531 (746)
253 PRK12901 secA preprotein trans 99.1 5E-09 1.1E-13 130.5 21.0 125 689-819 170-301 (1112)
254 KOG0384 Chromodomain-helicase 99.0 1.7E-09 3.7E-14 134.2 14.9 319 687-1071 369-812 (1373)
255 COG1197 Mfd Transcription-repa 99.0 6.4E-09 1.4E-13 131.3 19.3 177 3-235 738-914 (1139)
256 KOG4150 Predicted ATP-dependen 99.0 1.3E-09 2.9E-14 123.4 11.7 192 5-237 449-643 (1034)
257 PF07652 Flavi_DEAD: Flaviviru 99.0 4.5E-09 9.7E-14 101.8 13.1 135 703-857 3-138 (148)
258 TIGR00603 rad25 DNA repair hel 99.0 1.5E-09 3.2E-14 134.7 12.3 111 80-240 495-613 (732)
259 COG5407 SEC63 Preprotein trans 99.0 2.4E-09 5.2E-14 118.3 12.3 167 353-548 227-397 (610)
260 smart00490 HELICc helicase sup 99.0 1.2E-09 2.6E-14 99.8 8.5 72 975-1056 11-82 (82)
261 PRK14701 reverse gyrase; Provi 99.0 1.1E-09 2.4E-14 148.3 11.6 178 5-245 266-467 (1638)
262 smart00490 HELICc helicase sup 99.0 6.1E-10 1.3E-14 101.7 5.7 72 142-220 11-82 (82)
263 KOG0387 Transcription-coupled 99.0 1E-07 2.2E-12 113.8 24.4 114 915-1071 544-659 (923)
264 PRK13104 secA preprotein trans 98.9 1.7E-08 3.7E-13 126.2 18.8 127 9-184 381-508 (896)
265 PRK13766 Hef nuclease; Provisi 98.9 4.4E-09 9.5E-14 139.0 13.1 119 79-236 363-481 (773)
266 PF02399 Herpes_ori_bp: Origin 98.9 1.7E-07 3.6E-12 115.0 23.4 305 703-1070 48-388 (824)
267 PRK13107 preprotein translocas 98.9 4E-08 8.6E-13 122.5 18.0 193 9-259 386-628 (908)
268 KOG0389 SNF2 family DNA-depend 98.9 9.4E-08 2E-12 113.9 19.7 109 972-1090 798-909 (941)
269 PRK12904 preprotein translocas 98.9 6E-08 1.3E-12 121.4 19.1 169 9-235 367-574 (830)
270 COG0556 UvrB Helicase subunit 98.8 2.6E-08 5.7E-13 113.8 13.8 170 6-233 385-556 (663)
271 PRK09401 reverse gyrase; Revie 98.8 1.4E-08 3.1E-13 134.8 13.0 91 81-217 328-429 (1176)
272 KOG0953 Mitochondrial RNA heli 98.7 2.9E-08 6.4E-13 113.6 10.1 101 144-245 383-487 (700)
273 KOG0329 ATP-dependent RNA heli 98.7 1.3E-08 2.7E-13 104.8 3.6 147 3-240 213-361 (387)
274 KOG0392 SNF2 family DNA-depend 98.6 4E-07 8.7E-12 113.2 16.3 93 970-1072 1360-1456(1549)
275 PF00176 SNF2_N: SNF2 family N 98.6 1E-07 2.2E-12 111.6 10.8 150 703-863 24-182 (299)
276 smart00488 DEXDc2 DEAD-like he 98.6 1.6E-07 3.5E-12 107.1 11.6 72 684-756 5-83 (289)
277 smart00489 DEXDc3 DEAD-like he 98.6 1.6E-07 3.5E-12 107.1 11.6 72 684-756 5-83 (289)
278 TIGR01054 rgy reverse gyrase. 98.6 3.7E-07 8E-12 121.9 14.0 76 81-201 326-409 (1171)
279 COG1203 CRISPR-associated heli 98.5 3.2E-07 6.9E-12 118.4 12.1 116 72-234 431-550 (733)
280 COG0653 SecA Preprotein transl 98.4 2.4E-06 5.3E-11 105.9 14.7 129 685-820 78-212 (822)
281 COG0610 Type I site-specific r 98.4 1.5E-05 3.2E-10 105.1 21.9 141 704-857 273-415 (962)
282 KOG1002 Nucleotide excision re 98.4 1.6E-05 3.5E-10 89.9 18.5 154 688-856 184-355 (791)
283 KOG4439 RNA polymerase II tran 98.3 2.1E-05 4.5E-10 93.2 18.9 171 688-869 325-520 (901)
284 KOG0386 Chromatin remodeling c 98.2 2.1E-06 4.6E-11 105.3 8.3 346 688-1070 394-838 (1157)
285 PRK11448 hsdR type I restricti 98.2 1.5E-05 3.2E-10 106.0 15.6 103 81-221 698-802 (1123)
286 TIGR01407 dinG_rel DnaQ family 98.2 3.1E-05 6.8E-10 102.5 18.5 201 7-248 595-829 (850)
287 PF07517 SecA_DEAD: SecA DEAD- 98.1 1.1E-05 2.3E-10 89.3 10.9 129 685-820 75-209 (266)
288 PRK15483 type III restriction- 98.1 2.2E-05 4.8E-10 99.9 13.0 143 705-857 60-240 (986)
289 PF06862 DUF1253: Protein of u 98.0 0.0008 1.7E-08 79.4 23.8 258 782-1080 131-425 (442)
290 PF13086 AAA_11: AAA domain; P 98.0 3.8E-05 8.2E-10 86.2 11.6 68 688-756 1-75 (236)
291 COG1198 PriA Primosomal protei 98.0 7.3E-05 1.6E-09 93.5 14.4 216 6-236 348-605 (730)
292 COG1061 SSL2 DNA or RNA helica 98.0 2.9E-05 6.2E-10 94.6 10.6 95 80-219 282-376 (442)
293 PF02562 PhoH: PhoH-like prote 97.9 7.2E-05 1.6E-09 79.4 11.4 57 688-745 4-60 (205)
294 KOG1802 RNA helicase nonsense 97.9 6E-05 1.3E-09 88.7 10.7 80 684-770 406-485 (935)
295 PLN03142 Probable chromatin-re 97.9 6.7E-05 1.4E-09 97.9 11.8 87 143-236 512-601 (1033)
296 KOG2340 Uncharacterized conser 97.8 0.00067 1.5E-08 78.3 17.4 338 687-1072 215-670 (698)
297 PRK12903 secA preprotein trans 97.8 0.00051 1.1E-08 85.8 16.9 167 72-288 417-609 (925)
298 PF12340 DUF3638: Protein of u 97.8 0.00012 2.6E-09 78.1 10.0 131 688-820 23-184 (229)
299 PF13604 AAA_30: AAA domain; P 97.7 0.00018 3.9E-09 77.4 10.5 63 688-752 1-64 (196)
300 PRK08074 bifunctional ATP-depe 97.7 0.0011 2.4E-08 88.4 19.2 204 7-248 672-908 (928)
301 PRK12326 preprotein translocas 97.6 0.00069 1.5E-08 83.5 14.4 193 9-260 364-581 (764)
302 PF13245 AAA_19: Part of AAA d 97.5 0.00028 6E-09 62.3 7.3 59 696-754 2-62 (76)
303 KOG1803 DNA helicase [Replicat 97.5 0.0002 4.4E-09 84.6 8.2 67 687-755 184-250 (649)
304 PF13872 AAA_34: P-loop contai 97.5 0.00072 1.6E-08 74.9 12.1 160 688-855 37-220 (303)
305 COG0553 HepA Superfamily II DN 97.5 0.0016 3.4E-08 88.7 17.2 87 975-1071 735-823 (866)
306 PRK10536 hypothetical protein; 97.4 0.00038 8.2E-09 75.9 7.4 60 685-745 56-115 (262)
307 COG1199 DinG Rad3-related DNA 97.4 0.00088 1.9E-08 87.2 12.3 200 7-247 403-631 (654)
308 PRK11747 dinG ATP-dependent DN 97.4 0.0045 9.7E-08 79.9 18.3 188 8-239 457-680 (697)
309 PRK12899 secA preprotein trans 97.3 0.0039 8.4E-08 79.2 16.7 168 9-235 505-682 (970)
310 KOG0391 SNF2 family DNA-depend 97.3 0.00039 8.5E-09 86.5 7.6 136 688-833 615-762 (1958)
311 PRK10875 recD exonuclease V su 97.2 0.0033 7.1E-08 78.8 13.5 150 680-852 143-299 (615)
312 CHL00122 secA preprotein trans 97.1 0.015 3.3E-07 73.6 18.8 86 9-104 361-447 (870)
313 PRK07246 bifunctional ATP-depe 97.1 0.0097 2.1E-07 78.0 17.8 132 76-248 642-798 (820)
314 TIGR01447 recD exodeoxyribonuc 97.1 0.0049 1.1E-07 77.3 14.0 140 690-852 147-293 (586)
315 PRK12901 secA preprotein trans 97.1 0.0046 1E-07 78.8 13.3 190 9-256 565-775 (1112)
316 PRK13103 secA preprotein trans 97.0 0.0046 9.9E-08 78.5 13.1 86 9-104 386-472 (913)
317 PRK12902 secA preprotein trans 97.0 0.025 5.4E-07 71.6 18.5 86 9-104 376-462 (939)
318 PF09848 DUF2075: Uncharacteri 96.9 0.0018 3.9E-08 77.0 8.0 96 705-822 2-97 (352)
319 PF13307 Helicase_C_2: Helicas 96.9 0.0014 3.1E-08 68.5 5.7 129 917-1080 9-161 (167)
320 PF13401 AAA_22: AAA domain; P 96.8 0.0033 7E-08 63.1 7.8 26 703-728 3-28 (131)
321 TIGR00596 rad1 DNA repair prot 96.8 0.041 8.9E-07 71.1 19.0 53 489-542 758-810 (814)
322 TIGR01448 recD_rel helicase, p 96.7 0.011 2.4E-07 76.5 13.0 60 688-749 323-383 (720)
323 PF00448 SRP54: SRP54-type pro 96.7 0.015 3.3E-07 62.3 11.9 123 705-857 2-127 (196)
324 PRK12723 flagellar biosynthesi 96.7 0.023 4.9E-07 67.3 14.3 126 704-863 174-304 (388)
325 PF00580 UvrD-helicase: UvrD/R 96.6 0.0052 1.1E-07 72.4 8.1 70 689-761 1-72 (315)
326 TIGR02562 cas3_yersinia CRISPR 96.5 0.015 3.2E-07 74.8 12.0 71 145-225 789-885 (1110)
327 PRK14722 flhF flagellar biosyn 96.5 0.022 4.8E-07 66.7 12.6 123 702-857 135-259 (374)
328 COG1875 NYN ribonuclease and A 96.5 0.009 1.9E-07 66.9 8.4 66 682-747 222-289 (436)
329 TIGR02768 TraA_Ti Ti-type conj 96.5 0.021 4.6E-07 74.2 13.4 60 688-749 352-411 (744)
330 TIGR00376 DNA helicase, putati 96.5 0.0073 1.6E-07 76.8 8.9 68 687-756 156-223 (637)
331 PRK13889 conjugal transfer rel 96.4 0.019 4.1E-07 75.5 12.4 60 688-749 346-405 (988)
332 COG3587 Restriction endonuclea 96.4 0.013 2.9E-07 72.2 9.8 49 703-751 73-121 (985)
333 KOG1132 Helicase of the DEAD s 96.3 0.017 3.7E-07 71.7 10.3 71 685-756 19-132 (945)
334 TIGR00604 rad3 DNA repair heli 96.3 0.036 7.8E-07 72.3 14.1 186 8-230 442-671 (705)
335 TIGR00348 hsdR type I site-spe 96.2 0.047 1E-06 70.4 14.5 116 81-219 514-634 (667)
336 KOG1131 RNA polymerase II tran 96.2 0.029 6.3E-07 65.1 10.9 74 682-755 10-88 (755)
337 PF13307 Helicase_C_2: Helicas 96.2 0.0061 1.3E-07 63.8 5.2 124 80-241 8-158 (167)
338 PF05970 PIF1: PIF1-like helic 96.1 0.021 4.4E-07 68.1 9.7 124 688-840 1-131 (364)
339 cd00009 AAA The AAA+ (ATPases 96.1 0.025 5.4E-07 57.7 9.2 38 704-743 19-56 (151)
340 PF14520 HHH_5: Helix-hairpin- 96.0 0.0064 1.4E-07 51.1 3.4 52 1321-1372 6-59 (60)
341 COG1419 FlhF Flagellar GTP-bin 96.0 0.14 3E-06 59.5 15.1 126 704-863 203-330 (407)
342 PRK06526 transposase; Provisio 95.8 0.058 1.3E-06 60.4 11.0 37 702-740 96-132 (254)
343 PRK13826 Dtr system oriT relax 95.8 0.058 1.2E-06 71.5 12.5 123 688-852 381-503 (1102)
344 PRK11889 flhF flagellar biosyn 95.7 0.16 3.6E-06 59.0 14.3 122 704-857 241-364 (436)
345 PRK14974 cell division protein 95.6 0.12 2.7E-06 59.9 13.1 124 704-857 140-266 (336)
346 KOG1805 DNA replication helica 95.6 0.032 7E-07 69.9 8.5 122 686-820 667-808 (1100)
347 smart00492 HELICc3 helicase su 95.6 0.052 1.1E-06 54.6 8.7 87 979-1066 25-135 (141)
348 PRK04296 thymidine kinase; Pro 95.6 0.08 1.7E-06 56.7 10.6 37 704-742 2-38 (190)
349 PHA02533 17 large terminase pr 95.5 0.18 4E-06 62.5 14.9 71 689-760 60-130 (534)
350 COG3421 Uncharacterized protei 95.5 0.025 5.4E-07 66.9 6.6 150 709-863 2-173 (812)
351 PRK08181 transposase; Validate 95.5 0.12 2.6E-06 58.2 11.8 59 688-749 87-148 (269)
352 COG4096 HsdR Type I site-speci 95.4 0.12 2.5E-06 64.6 12.4 135 82-258 427-567 (875)
353 TIGR01547 phage_term_2 phage t 95.4 0.097 2.1E-06 63.6 11.8 136 706-857 3-142 (396)
354 PHA03368 DNA packaging termina 95.3 0.35 7.5E-06 59.6 15.4 154 678-855 233-390 (738)
355 PF14520 HHH_5: Helix-hairpin- 95.3 0.015 3.2E-07 48.9 2.9 52 489-541 6-59 (60)
356 PRK05703 flhF flagellar biosyn 95.2 0.23 4.9E-06 60.2 14.0 122 703-856 220-343 (424)
357 TIGR01075 uvrD DNA helicase II 95.1 0.044 9.6E-07 71.8 8.3 108 687-818 3-113 (715)
358 PF00308 Bac_DnaA: Bacterial d 95.0 0.2 4.3E-06 55.0 11.8 106 706-857 36-142 (219)
359 PRK07952 DNA replication prote 95.0 0.41 8.8E-06 53.1 14.1 50 689-740 77-133 (244)
360 KOG0921 Dosage compensation co 95.0 0.023 5E-07 70.1 4.6 125 82-239 644-779 (1282)
361 PRK12377 putative replication 95.0 0.19 4.2E-06 55.8 11.5 44 704-750 101-144 (248)
362 KOG0392 SNF2 family DNA-depend 94.9 0.1 2.2E-06 67.0 9.9 113 81-237 1340-1457(1549)
363 PRK13833 conjugal transfer pro 94.9 0.055 1.2E-06 62.3 7.1 59 687-746 127-186 (323)
364 PRK10919 ATP-dependent DNA hel 94.8 0.053 1.2E-06 70.0 7.6 90 688-799 2-94 (672)
365 PF05621 TniB: Bacterial TniB 94.7 0.12 2.7E-06 57.9 9.0 116 705-851 62-186 (302)
366 PRK11054 helD DNA helicase IV; 94.6 0.075 1.6E-06 68.1 8.1 88 687-799 195-285 (684)
367 COG1484 DnaC DNA replication p 94.6 0.12 2.5E-06 58.1 8.6 66 685-753 80-151 (254)
368 COG1110 Reverse gyrase [DNA re 94.6 0.14 3.1E-06 64.9 10.0 65 81-187 335-406 (1187)
369 PF05127 Helicase_RecD: Helica 94.5 0.0098 2.1E-07 61.6 -0.1 102 708-820 1-102 (177)
370 PRK12727 flagellar biosynthesi 94.5 0.27 5.8E-06 59.7 11.7 90 703-820 349-440 (559)
371 PRK13894 conjugal transfer ATP 94.5 0.072 1.6E-06 61.7 6.8 59 687-746 131-190 (319)
372 PF05876 Terminase_GpA: Phage 94.4 0.2 4.4E-06 62.9 11.2 165 688-865 16-191 (557)
373 PF00004 AAA: ATPase family as 94.4 0.098 2.1E-06 52.3 7.0 17 707-723 1-17 (132)
374 TIGR02782 TrbB_P P-type conjug 94.4 0.099 2.1E-06 60.2 7.8 59 688-747 116-175 (299)
375 smart00382 AAA ATPases associa 94.4 0.034 7.5E-07 56.2 3.6 42 704-747 2-43 (148)
376 COG2256 MGS1 ATPase related to 94.3 0.15 3.3E-06 58.5 8.6 27 697-723 39-67 (436)
377 PRK12726 flagellar biosynthesi 94.3 0.37 8E-06 56.0 11.8 129 703-864 205-335 (407)
378 TIGR03877 thermo_KaiC_1 KaiC d 94.3 0.24 5.3E-06 55.2 10.4 50 703-755 20-69 (237)
379 PRK08903 DnaA regulatory inact 94.3 0.18 3.9E-06 56.0 9.3 21 703-723 41-61 (227)
380 PRK08727 hypothetical protein; 94.3 0.22 4.8E-06 55.3 9.9 35 705-741 42-76 (233)
381 COG1444 Predicted P-loop ATPas 94.2 0.65 1.4E-05 58.7 14.6 143 689-858 212-359 (758)
382 KOG0388 SNF2 family DNA-depend 94.2 0.22 4.9E-06 60.1 10.0 87 975-1071 1068-1155(1185)
383 PF04408 HA2: Helicase associa 94.2 0.064 1.4E-06 50.8 4.6 66 1152-1222 1-66 (102)
384 PRK14087 dnaA chromosomal repl 94.2 0.35 7.7E-06 59.1 12.2 45 705-751 142-187 (450)
385 PRK06893 DNA replication initi 94.0 0.4 8.6E-06 53.2 11.3 35 705-741 40-74 (229)
386 cd01120 RecA-like_NTPases RecA 94.0 0.21 4.6E-06 51.9 8.9 39 707-747 2-40 (165)
387 PHA03333 putative ATPase subun 94.0 1.3 2.9E-05 55.0 16.2 157 689-865 170-341 (752)
388 TIGR03420 DnaA_homol_Hda DnaA 93.9 0.27 5.8E-06 54.6 9.8 25 703-727 37-61 (226)
389 TIGR01074 rep ATP-dependent DN 93.9 0.15 3.2E-06 66.7 8.8 89 689-799 2-93 (664)
390 PRK00771 signal recognition pa 93.8 0.47 1E-05 57.3 12.1 121 704-856 95-218 (437)
391 COG4962 CpaF Flp pilus assembl 93.8 0.16 3.5E-06 57.4 7.4 63 682-747 151-213 (355)
392 PRK14712 conjugal transfer nic 93.7 0.36 7.9E-06 66.3 12.0 63 688-750 835-900 (1623)
393 PRK08116 hypothetical protein; 93.7 1.6 3.5E-05 49.5 15.5 40 706-748 116-155 (268)
394 PF05496 RuvB_N: Holliday junc 93.6 0.29 6.3E-06 52.5 8.7 18 705-722 51-68 (233)
395 PRK14723 flhF flagellar biosyn 93.6 0.49 1.1E-05 60.4 12.3 120 704-856 185-306 (767)
396 TIGR02881 spore_V_K stage V sp 93.6 0.34 7.4E-06 55.0 10.1 21 704-724 42-62 (261)
397 PRK00149 dnaA chromosomal repl 93.6 0.32 6.9E-06 60.1 10.6 44 705-749 149-192 (450)
398 PRK11773 uvrD DNA-dependent he 93.5 0.14 3E-06 67.2 7.5 108 687-818 8-118 (721)
399 TIGR03499 FlhF flagellar biosy 93.4 0.26 5.7E-06 56.3 8.8 87 703-817 193-281 (282)
400 cd00984 DnaB_C DnaB helicase C 93.4 0.78 1.7E-05 51.5 12.5 142 703-854 12-172 (242)
401 KOG0298 DEAD box-containing he 93.4 0.31 6.8E-06 63.3 9.8 157 701-869 371-568 (1394)
402 KOG0989 Replication factor C, 93.3 0.27 5.8E-06 54.4 8.0 46 804-856 125-170 (346)
403 KOG0384 Chromodomain-helicase 93.3 0.33 7.2E-06 62.8 9.9 119 73-236 690-813 (1373)
404 cd01122 GP4d_helicase GP4d_hel 93.2 0.35 7.5E-06 55.4 9.5 39 703-742 29-67 (271)
405 PRK06995 flhF flagellar biosyn 93.2 1.3 2.9E-05 53.9 14.6 56 703-758 255-312 (484)
406 TIGR00064 ftsY signal recognit 93.2 0.68 1.5E-05 52.5 11.5 53 704-758 72-126 (272)
407 PRK05973 replicative DNA helic 93.2 0.51 1.1E-05 51.9 10.1 129 702-854 62-192 (237)
408 TIGR03117 cas_csf4 CRISPR-asso 93.2 0.69 1.5E-05 58.3 12.4 122 72-233 460-616 (636)
409 PRK14721 flhF flagellar biosyn 93.2 1.2 2.5E-05 53.5 13.8 127 703-863 190-318 (420)
410 PRK08084 DNA replication initi 93.1 0.37 8E-06 53.7 9.0 38 703-742 44-81 (235)
411 PF03796 DnaB_C: DnaB-like hel 93.0 0.69 1.5E-05 52.5 11.3 143 703-854 18-179 (259)
412 KOG0390 DNA repair protein, SN 92.9 0.55 1.2E-05 59.5 10.9 90 137-234 614-707 (776)
413 PRK00411 cdc6 cell division co 92.9 0.41 8.9E-06 58.2 10.0 36 704-740 55-91 (394)
414 smart00491 HELICc2 helicase su 92.9 0.28 6.2E-06 49.5 7.1 79 987-1066 30-136 (142)
415 KOG1015 Transcription regulato 92.9 0.38 8.2E-06 60.1 9.1 137 705-855 697-859 (1567)
416 KOG0387 Transcription-coupled 92.8 0.84 1.8E-05 56.6 11.9 123 71-237 536-661 (923)
417 PRK11823 DNA repair protein Ra 92.7 0.65 1.4E-05 56.8 11.2 120 703-852 79-205 (446)
418 smart00847 HA2 Helicase associ 92.7 0.14 2.9E-06 47.6 4.2 57 1153-1212 2-58 (92)
419 PRK10416 signal recognition pa 92.7 1.2 2.6E-05 51.8 12.7 53 703-757 113-167 (318)
420 PRK13709 conjugal transfer nic 92.7 0.71 1.5E-05 64.6 12.6 61 688-749 967-1031(1747)
421 PRK12766 50S ribosomal protein 92.7 0.2 4.4E-06 53.3 5.7 53 1320-1372 3-57 (232)
422 TIGR00362 DnaA chromosomal rep 92.6 0.5 1.1E-05 57.5 10.2 37 705-742 137-174 (405)
423 PRK12402 replication factor C 92.6 0.65 1.4E-05 55.1 11.0 34 692-725 22-57 (337)
424 CHL00181 cbbX CbbX; Provisiona 92.6 0.93 2E-05 52.0 11.5 21 704-724 59-79 (287)
425 PRK14088 dnaA chromosomal repl 92.5 0.76 1.6E-05 56.2 11.5 37 705-742 131-168 (440)
426 PRK05642 DNA replication initi 92.5 0.59 1.3E-05 51.9 9.7 36 705-742 46-81 (234)
427 PTZ00112 origin recognition co 92.4 0.92 2E-05 57.7 11.8 19 707-725 784-802 (1164)
428 TIGR02760 TraI_TIGR conjugativ 92.4 0.53 1.2E-05 67.7 11.3 62 687-749 1018-1083(1960)
429 PRK06921 hypothetical protein; 92.3 0.9 2E-05 51.4 10.9 44 703-748 116-159 (266)
430 TIGR02760 TraI_TIGR conjugativ 92.3 0.69 1.5E-05 66.6 12.1 62 688-751 429-491 (1960)
431 PRK06731 flhF flagellar biosyn 92.2 1.9 4.1E-05 48.6 13.2 121 703-856 74-197 (270)
432 cd01130 VirB11-like_ATPase Typ 92.2 0.23 5.1E-06 53.0 5.8 54 686-742 7-60 (186)
433 PRK13851 type IV secretion sys 92.2 0.18 3.8E-06 58.9 5.1 53 692-747 150-202 (344)
434 TIGR01073 pcrA ATP-dependent D 92.1 0.35 7.5E-06 63.7 8.3 90 687-799 3-95 (726)
435 PRK06904 replicative DNA helic 92.0 0.71 1.5E-05 56.8 10.4 143 702-853 219-382 (472)
436 PLN03025 replication factor C 92.0 1.3 2.8E-05 51.9 12.3 20 705-724 35-54 (319)
437 COG1474 CDC6 Cdc6-related prot 92.0 0.92 2E-05 53.7 10.9 27 704-731 42-68 (366)
438 COG0653 SecA Preprotein transl 92.0 0.54 1.2E-05 59.8 9.3 111 73-233 421-544 (822)
439 PRK14956 DNA polymerase III su 92.0 0.61 1.3E-05 56.4 9.4 20 706-725 42-61 (484)
440 smart00492 HELICc3 helicase su 92.0 0.42 9E-06 48.2 6.9 84 146-230 25-135 (141)
441 PRK04328 hypothetical protein; 91.9 0.96 2.1E-05 50.8 10.5 37 703-741 22-58 (249)
442 PRK08506 replicative DNA helic 91.9 0.6 1.3E-05 57.6 9.5 142 703-854 191-351 (472)
443 PF03354 Terminase_1: Phage Te 91.9 1.6 3.4E-05 54.3 13.4 70 691-760 1-80 (477)
444 PRK14964 DNA polymerase III su 91.8 1 2.3E-05 55.1 11.3 20 705-724 36-55 (491)
445 PRK14086 dnaA chromosomal repl 91.8 0.92 2E-05 56.5 10.9 43 705-749 315-358 (617)
446 PRK05748 replicative DNA helic 91.8 0.59 1.3E-05 57.6 9.5 143 703-854 202-364 (448)
447 cd01121 Sms Sms (bacterial rad 91.8 1.1 2.3E-05 53.3 11.1 120 703-852 81-207 (372)
448 TIGR01425 SRP54_euk signal rec 91.8 1.9 4.1E-05 51.7 13.2 123 705-857 101-226 (429)
449 TIGR02785 addA_Gpos recombinat 91.7 0.4 8.8E-06 66.4 8.6 123 688-818 1-125 (1232)
450 TIGR02880 cbbX_cfxQ probable R 91.7 1.2 2.5E-05 51.2 11.0 20 704-723 58-77 (284)
451 PRK14960 DNA polymerase III su 91.5 0.76 1.6E-05 57.4 9.7 21 705-725 38-58 (702)
452 cd03115 SRP The signal recogni 91.5 1.2 2.7E-05 46.9 10.4 45 706-752 2-48 (173)
453 PRK06645 DNA polymerase III su 91.5 1.1 2.5E-05 55.2 11.2 21 705-725 44-64 (507)
454 TIGR03015 pepcterm_ATPase puta 91.3 0.52 1.1E-05 53.9 7.9 40 689-729 24-67 (269)
455 PRK08006 replicative DNA helic 91.2 1.1 2.3E-05 55.2 10.7 143 703-854 223-385 (471)
456 PHA03372 DNA packaging termina 91.2 2.4 5.2E-05 51.9 13.0 161 678-865 181-346 (668)
457 PRK07004 replicative DNA helic 91.1 0.78 1.7E-05 56.3 9.4 143 703-854 212-373 (460)
458 KOG0391 SNF2 family DNA-depend 91.0 1.1 2.3E-05 57.6 10.3 88 974-1071 1299-1388(1958)
459 PF04408 HA2: Helicase associa 91.0 0.2 4.4E-06 47.4 3.4 65 319-390 1-65 (102)
460 PRK08760 replicative DNA helic 91.0 0.78 1.7E-05 56.6 9.3 142 703-854 228-388 (476)
461 PRK12724 flagellar biosynthesi 90.9 4 8.6E-05 48.7 14.4 52 704-756 223-276 (432)
462 KOG0385 Chromatin remodeling c 90.9 1.4 3E-05 54.6 10.7 87 144-237 513-602 (971)
463 PRK08691 DNA polymerase III su 90.8 1 2.2E-05 56.8 10.0 21 705-725 39-59 (709)
464 COG1435 Tdk Thymidine kinase [ 90.8 1.3 2.9E-05 46.1 9.1 94 704-823 4-97 (201)
465 TIGR02928 orc1/cdc6 family rep 90.7 0.64 1.4E-05 55.9 8.1 25 704-729 40-64 (365)
466 PRK08840 replicative DNA helic 90.6 1.6 3.5E-05 53.5 11.5 143 702-853 215-377 (464)
467 PRK13900 type IV secretion sys 90.6 0.33 7.2E-06 56.7 5.3 50 695-747 151-200 (332)
468 PRK10867 signal recognition pa 90.5 1.8 3.9E-05 52.3 11.4 52 705-757 101-154 (433)
469 PRK05707 DNA polymerase III su 90.5 1.5 3.3E-05 51.2 10.5 36 689-724 4-42 (328)
470 PF13177 DNA_pol3_delta2: DNA 90.4 3.8 8.3E-05 42.5 12.5 54 795-855 89-142 (162)
471 PF00437 T2SE: Type II/IV secr 90.4 0.29 6.4E-06 55.9 4.6 54 691-746 114-167 (270)
472 PRK14873 primosome assembly pr 90.3 0.98 2.1E-05 57.7 9.4 72 73-179 180-251 (665)
473 PF01695 IstB_IS21: IstB-like 90.2 0.48 1E-05 50.0 5.7 46 701-749 44-89 (178)
474 TIGR00665 DnaB replicative DNA 90.2 0.93 2E-05 55.8 9.1 142 703-854 194-354 (434)
475 PRK12422 chromosomal replicati 90.1 1.8 3.8E-05 53.0 11.1 36 705-742 142-177 (445)
476 PRK13342 recombination factor 90.1 0.87 1.9E-05 55.5 8.5 19 705-723 37-55 (413)
477 COG2805 PilT Tfp pilus assembl 89.9 0.35 7.6E-06 53.4 4.3 41 704-745 125-165 (353)
478 PRK07003 DNA polymerase III su 89.9 2.3 5E-05 53.9 11.9 40 807-853 118-157 (830)
479 PRK14955 DNA polymerase III su 89.9 1.2 2.7E-05 53.8 9.6 28 697-724 28-58 (397)
480 PRK12766 50S ribosomal protein 89.8 0.53 1.1E-05 50.3 5.4 53 488-541 3-57 (232)
481 TIGR03600 phage_DnaB phage rep 89.8 1.1 2.4E-05 54.9 9.2 143 703-854 193-353 (421)
482 TIGR02012 tigrfam_recA protein 89.8 0.54 1.2E-05 54.1 6.1 44 703-748 54-97 (321)
483 COG0593 DnaA ATPase involved i 89.8 1.9 4.1E-05 51.1 10.6 40 704-743 113-152 (408)
484 KOG1001 Helicase-like transcri 89.8 1 2.3E-05 57.2 9.0 108 706-823 154-269 (674)
485 PRK12323 DNA polymerase III su 89.8 1.2 2.7E-05 55.5 9.3 42 806-854 122-163 (700)
486 PF05707 Zot: Zonular occluden 89.7 0.64 1.4E-05 50.0 6.2 47 808-857 79-128 (193)
487 COG2255 RuvB Holliday junction 89.7 0.63 1.4E-05 51.0 6.0 18 705-722 53-70 (332)
488 TIGR03881 KaiC_arch_4 KaiC dom 89.7 2.5 5.4E-05 46.9 11.2 38 703-742 19-56 (229)
489 COG0552 FtsY Signal recognitio 89.6 5.3 0.00012 45.5 13.3 127 705-857 140-271 (340)
490 COG2804 PulE Type II secretory 89.5 0.64 1.4E-05 55.6 6.4 42 689-731 242-284 (500)
491 KOG0388 SNF2 family DNA-depend 89.5 1.5 3.3E-05 53.3 9.5 148 38-235 1002-1155(1185)
492 PRK07994 DNA polymerase III su 89.5 1.4 3.1E-05 55.7 9.8 39 806-851 117-155 (647)
493 PF05729 NACHT: NACHT domain 89.5 2 4.4E-05 44.6 9.8 43 706-748 2-47 (166)
494 PRK14958 DNA polymerase III su 89.4 1.4 3.1E-05 54.7 9.8 39 807-852 118-156 (509)
495 cd00983 recA RecA is a bacter 89.4 0.54 1.2E-05 54.2 5.5 44 703-748 54-97 (325)
496 PRK14963 DNA polymerase III su 89.2 2 4.3E-05 53.4 10.7 24 706-730 38-61 (504)
497 TIGR03878 thermo_KaiC_2 KaiC d 89.2 1.9 4.2E-05 48.7 9.9 38 703-742 35-72 (259)
498 PRK14949 DNA polymerase III su 89.2 1 2.2E-05 58.2 8.2 38 807-851 118-155 (944)
499 PRK06067 flagellar accessory p 89.1 1.2 2.6E-05 49.6 8.1 49 703-754 24-72 (234)
500 PRK09354 recA recombinase A; P 89.0 0.67 1.5E-05 53.9 6.1 44 703-748 59-102 (349)
No 1
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=5.4e-187 Score=1650.45 Aligned_cols=1147 Identities=48% Similarity=0.867 Sum_probs=1089.3
Q ss_pred CCCCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 2 ESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 2 ~~~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
++...++|+||||||+||++|+|.||++. +.++|+|+++|||+||.+.|+|+.+++..++...||+.||++++++..+
T Consensus 469 es~~e~~RlVGLSATLPNy~DV~~Fl~v~-~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk- 546 (1674)
T KOG0951|consen 469 ESTEEGSRLVGLSATLPNYEDVASFLRVD-PEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGK- 546 (1674)
T ss_pred hhcccCceeeeecccCCchhhhHHHhccC-cccccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCC-
Confidence 45677899999999999999999999999 5999999999999999999999999988888999999999999999655
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+|+||||||||+|-++|+.|++.+.+.+.+..|.+.+..+.++++.++....+.+|++++.+|+|+|||||.+.+|..+|
T Consensus 547 ~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~E 626 (1674)
T KOG0951|consen 547 NQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVE 626 (1674)
T ss_pred CcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCc---hhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLG---MLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~---~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
++|++|+++|+|||.|||||||+|+++|||+||+.|||++|.|++++ .+||.||||||++|+.|+++++++..++.+
T Consensus 627 dLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qy 706 (1674)
T KOG0951|consen 627 DLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQY 706 (1674)
T ss_pred HHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhh
Confidence 99999999999999999999999999999999999999999998765 667999999999999999999999999999
Q ss_pred HHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHHH
Q 043190 239 YLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALVT 318 (1492)
Q Consensus 239 ~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~ 318 (1492)
|.++++++.||||++...|.+.+||||+.| +++.+|+.+|+.+||+|+||.+||..||++++. +|+.+...+.++++
T Consensus 707 yls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~--~d~~le~~r~~lvh 783 (1674)
T KOG0951|consen 707 YLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEA--SDRLLEQRRADLVH 783 (1674)
T ss_pred hHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCccc--chHHHHHHHhhhHH
Confidence 999999999999999999999999999999 999999999999999999999999999999886 38888888899999
Q ss_pred HHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHHH
Q 043190 319 DAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELE 398 (1492)
Q Consensus 319 ~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~ 398 (1492)
+|+..|+++|+|.++..++.+++|++|+++|+|||.+.+|..|++.|++.+++.+++.+++++.||+.+.+|.+|+.+|.
T Consensus 784 sa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr~~ek~el~ 863 (1674)
T KOG0951|consen 784 SAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVREEEKMELA 863 (1674)
T ss_pred HHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCccHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccccCCCCChhHHHHHHHHHHHcCCCCCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Q 043190 399 TLVQTLCPVEVKGGPSNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKA 478 (1492)
Q Consensus 399 ~l~~~~~~~~~~~~~~~~~~K~~~Llqa~i~~~~~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~ 478 (1492)
.+... .|+|+++....+..|+|+|||+|+|++.++.++|..|+.+|-|+|.|++||++||++.+||++.+..++.+|||
T Consensus 864 ~l~~~-vpIpire~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~~~l~~ck~ 942 (1674)
T KOG0951|consen 864 KLLER-VPIPIRENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQMALNLCKM 942 (1674)
T ss_pred hhccc-CCcCchhccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHHHHHHhHhH
Confidence 99998 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCcccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhcCCchHHHHHHHhccCCceeEEEEEeecccc
Q 043190 479 VDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVKQYLGYFPSIQLSATVSPITRT 558 (1492)
Q Consensus 479 i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~ 558 (1492)
+++++|+.+.||+||+ +++.+.++.|+++.+.|.++.++++.++.++++.+++|.-++.++++||++.+...+|||+++
T Consensus 943 v~~r~w~~~~plrqf~-~~~~ev~~~lE~k~~~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~~~vqpitr~ 1021 (1674)
T KOG0951|consen 943 VEKRMWPTQTPLRQFK-GCPKEVLRRLEKKELPWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVSAHVQPITRS 1021 (1674)
T ss_pred hhhhcccccCchhhcC-CCCHHHHHHHHhccCcchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceeeeeeeeeeee
Confidence 9999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEecCCcccCCcCCcccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEEEEEeeccCCCCCcceeeeccCcc
Q 043190 559 VLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSW 638 (1492)
Q Consensus 559 ~~~i~~~~~~~f~~~~~~h~~~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v~~~ip~~~p~p~~~~v~~~Sd~w 638 (1492)
.+++.+.++|+|.|+.++||..|.||++|+|.+++.|+|++.|.++++ .+.+.|++|+++| ||+|+++++|++|
T Consensus 1022 ~~~~~l~i~~~f~wd~~vh~~~e~F~i~ved~dge~il~~e~~~~~k~-----~~~v~ft~~~~~~-pP~~fi~lvSd~w 1095 (1674)
T KOG0951|consen 1022 VYRVELTITPDFDWDDKVHGSVEPFWIIVEDTDGEKILHHEFFLLKKK-----EHTVNFTVPLFEP-PPQYFIRLVSDRW 1095 (1674)
T ss_pred EEEEEEEEeecccchhhhcccccceEEEEEccCccceeeeeeEEeccC-----ceEEEEEeecCCC-CCceEEEEeeccc
Confidence 999999999999999999999999999999999999999999999876 7899999999999 9999999999999
Q ss_pred cccceeEEecccccccCCCCCCCcccCCCCCccccccCchhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCch
Q 043190 639 LHAEAFYCISFHNLALPQARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKT 718 (1492)
Q Consensus 639 l~~~~~~~i~~~~~~~p~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT 718 (1492)
+++++..|++|.++++|.+.+++|+++|++|+|++++.++.+..+|.. +||+|.|+++.++++++++++++|+|||||
T Consensus 1096 l~s~~~~Pvsfr~l~lpek~p~pt~lld~~~~~~~~l~N~~~~~lf~~--~n~iqtqVf~~~y~~nd~v~vga~~gsgkt 1173 (1674)
T KOG0951|consen 1096 LHSETVLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNPSFETLFQD--FNPIQTQVFTSLYNTNDNVLVGAPNGSGKT 1173 (1674)
T ss_pred cCCCcccccchhhccCcccCCCCchhhhccccchhccCCcchhhhccc--cCCceEEEEeeeecccceEEEecCCCCchh
Confidence 999999999999999999999999999999999999999999998743 399999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhh
Q 043190 719 ISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISR 798 (1492)
Q Consensus 719 ~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~ 798 (1492)
.|+++++++ .....+++|++|.-+.+..++..|.++|+...|..+..++|+...+.......+|+|+||++|+.+ +
T Consensus 1174 ~~ae~a~l~---~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii~tpe~~d~l-q 1249 (1674)
T KOG0951|consen 1174 ACAELALLR---PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVIISTPEQWDLL-Q 1249 (1674)
T ss_pred HHHHHHhcC---CccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEEechhHHHHH-h
Confidence 999999988 345789999999999999999999999999999999999999999998889999999999999877 2
Q ss_pred cccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCC
Q 043190 799 NWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPS 878 (1492)
Q Consensus 799 ~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~ 878 (1492)
..+.+++.|.||.|++++..|+.++.+++ ++++..+..+++|++++|..+.|+.++ +|....++++|.+.
T Consensus 1250 ------~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~~k~ir~v~ls~~lana~d~---ig~s~~~v~Nf~p~ 1319 (1674)
T KOG0951|consen 1250 ------SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQLEKKIRVVALSSSLANARDL---IGASSSGVFNFSPS 1319 (1674)
T ss_pred ------hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHHHhheeEEEeehhhccchhh---ccccccceeecCcc
Confidence 36789999999999999889999999999 999999999999999999999999998 88999999999999
Q ss_pred ccccCcEEEEeccCCccccccccccChhHHHHHhhc-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHH
Q 043190 879 VRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957 (1492)
Q Consensus 879 ~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 957 (1492)
.||+|++.++.++...++..++.+|.++.+..+..+ ..+++.+||+++++.|..+|..+..++..+.. .+
T Consensus 1320 ~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~--~~------- 1390 (1674)
T KOG0951|consen 1320 VRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEP--DY------- 1390 (1674)
T ss_pred cCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcH--HH-------
Confidence 999999999999999999999999999999998876 56789999999999999999988877654311 11
Q ss_pred HHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCcc
Q 043190 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRY 1037 (1492)
Q Consensus 958 ~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~ 1037 (1492)
+..... -.+..+++.+..||+ |-+++..+...+-..|..|.++|+|...- .+|+-..+..||+.||++||++.+.|
T Consensus 1391 l~~~~e-~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvmgt~~ydg~e~~~ 1466 (1674)
T KOG0951|consen 1391 LLSELE-ECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVMGTQYYDGKEHSY 1466 (1674)
T ss_pred HHHHHh-cchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEecceeeccccccc
Confidence 111111 156788899999999 99999999999999999999999999888 99999999999999999999999999
Q ss_pred ccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHh
Q 043190 1038 VDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLS 1117 (1492)
Q Consensus 1038 ~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~ 1117 (1492)
.|||+++++||.|+|.| .|.|++++..+++++|++|+.+++|+||.|...|.|++|+||+.++|.+++|+++|++
T Consensus 1467 ~~y~i~~ll~m~G~a~~-----~~k~vi~~~~~~k~yykkfl~e~lPves~lq~~lhd~~n~ei~~~tienkqd~vd~lt 1541 (1674)
T KOG0951|consen 1467 EDYPIAELLQMVGLASG-----AGKCVIMCHTPKKEYYKKFLYEPLPVESHLQHCLHDNFNAEIVTKTIENKQDAVDYLT 1541 (1674)
T ss_pred ccCchhHHHHHhhhhcC-----CccEEEEecCchHHHHHHhccCcCchHHHHHHHHHhhhhHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999998 4799999999999999999999999999999999999999999999999999999999
Q ss_pred hchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccC
Q 043190 1118 WTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIG 1197 (1492)
Q Consensus 1118 ~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~ 1197 (1492)
|+|+|+|+..||+||++++...+++++++++++++++..|+...||+++...- .+|.|+++||+++-|+..|..++.
T Consensus 1542 ~s~~yrr~~~np~yy~l~~v~~~~~S~~lS~lvet~l~dl~~s~~i~v~dad~---~l~~Ias~y~i~y~ti~~f~~~L~ 1618 (1674)
T KOG0951|consen 1542 WSFMYRRLPQNPNYYNLQGVSHRHLSDFLSELVETTLNDLEESKCIEVDDEDD---SLGMIASYYYISYITIERFSSSLS 1618 (1674)
T ss_pred HHHhhhccccCcceecccccchhhhhhHHHHHHHHHHHHhhcCceEEeecccc---ccchhhhhceeeeEeeehhhhhhh
Confidence 99999999999999999999999999999999999999999999999976543 399999999999999988876554
Q ss_pred C
Q 043190 1198 P 1198 (1492)
Q Consensus 1198 ~ 1198 (1492)
.
T Consensus 1619 ~ 1619 (1674)
T KOG0951|consen 1619 E 1619 (1674)
T ss_pred h
Confidence 3
No 2
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.3e-146 Score=1291.99 Aligned_cols=957 Identities=55% Similarity=0.920 Sum_probs=904.5
Q ss_pred CCCCCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhc
Q 043190 1 VESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 1 ~~~~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1492)
||++|+.+||||||||+||++|+|.||++++..++|.|+..||||||.+.++|.+.++.......+++.+|+++.+.+.+
T Consensus 269 vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~ 348 (1230)
T KOG0952|consen 269 VESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE 348 (1230)
T ss_pred HHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHc
Confidence 57899999999999999999999999999999999999999999999999999987766666777899999999999999
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
|+|++||||+|++|.++|+.|.+.+...+..+.|.... ++++|++++.+|+|+|||||.+++|..+
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~--------------~~k~l~elf~~g~~iHhAGm~r~DR~l~ 414 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSP--------------RNKQLKELFQQGMGIHHAGMLRSDRQLV 414 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCCh--------------hhHHHHHHHHhhhhhcccccchhhHHHH
Confidence 99999999999999999999999988887777775422 4678999999999999999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccC---chhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDL---GMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~---~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
|+.|..|.++|||||+||||||||||+.|||+||+.||++.|++.+. +.+|++|||||||||..|.++++|+.++++
T Consensus 415 E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~ 494 (1230)
T KOG0952|consen 415 EKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLD 494 (1230)
T ss_pred HHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHH
Confidence 99999999999999999999999999999999999999999887775 467799999999999999999999999999
Q ss_pred HHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHH
Q 043190 238 YYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALV 317 (1492)
Q Consensus 238 ~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~ 317 (1492)
+|.+++.++.||||+|...|.|||||||++|+|+++++|++|+++||+|+||.+||.+||+..+++..||.+..+++++|
T Consensus 495 ~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~ 574 (1230)
T KOG0952|consen 495 HYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELC 574 (1230)
T ss_pred HHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHH
Q 043190 318 TDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNEL 397 (1492)
Q Consensus 318 ~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l 397 (1492)
..++..|.+..||.+|.+++.|.+|++||+||+|||.++||+.|++..++.+++.++|.++|+|.||+.+++|++|+++|
T Consensus 575 ~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l 654 (1230)
T KOG0952|consen 575 LVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLPKSFYSEDDILALISMAEEFSQIKVREEEKKEL 654 (1230)
T ss_pred HHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcccccCCHHHHHHHHHhhHhhhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred HHHHhcCCcccccCCCCChhHHHHHHHHHHHcCCCCCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 043190 398 ETLVQTLCPVEVKGGPSNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCK 477 (1492)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~i~~~~~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~ 477 (1492)
++|+.+.+....... ...|+++|+|+||++..+..|+|.+|..|+.+|+.||.+++++++...+|...+.+++.|||
T Consensus 655 ~el~~~~~~~~~~~~---~~gk~nil~q~~Is~~~~~~f~L~sD~~yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k 731 (1230)
T KOG0952|consen 655 KELNEDSCEKYPFGG---EKGKVNILLQAYISRTEVKDFSLMSDSLYVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCK 731 (1230)
T ss_pred HHHHhcccccccccc---cchhHHHHHHhhhhccceeeeeeccCcccccccHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 999998332211111 28999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCCcccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhcCCchHHHHHHHhccCCceeEEEEEeeccc
Q 043190 478 AVDRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVKQYLGYFPSIQLSATVSPITR 557 (1492)
Q Consensus 478 ~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~ 557 (1492)
||+.++|....|++|++ .+-. ++ ++++. ++..+..+++++++.+.+.+ +++++.+|.+.+++..+|+++
T Consensus 732 ~ier~mw~~~~~l~qf~-~~~~---~~-~~~~~---~l~~L~~~~~g~~w~~~~~~---~k~l~~ip~v~v~a~~~p~t~ 800 (1230)
T KOG0952|consen 732 RIERRMWDFFIPLKQFT-LLLN---RK-ERKKL---TLLLLRKDELGELWHNVPYG---LKQLSGIPLVNVEALIQPITR 800 (1230)
T ss_pred HHHHHHHhhhhhhhcCC-cccc---hh-hhhcc---hHHhhhhhhhccccccCchh---hhhhccCCceehhhhhccchh
Confidence 99999999999999999 5444 33 33333 67788889999999877777 899999999999999999999
Q ss_pred ceEEEEEEEecCCcccCCcCCcccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEEEEEeeccCCCCCcceeeeccCc
Q 043190 558 TVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDS 637 (1492)
Q Consensus 558 ~~~~i~~~~~~~f~~~~~~h~~~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v~~~ip~~~p~p~~~~v~~~Sd~ 637 (1492)
+++++.+.++|+|.|+...||....+ +|++|++...++|.+.+.+.++..+. .+.+.|++|+.+|+|++++.+..|+.
T Consensus 801 ~vlri~~~~~~~f~w~~~~hg~~g~~-i~~ed~~~~~i~h~e~~~~~~~~~~~-s~~lvf~ipis~pLps~~~~~~~s~~ 878 (1230)
T KOG0952|consen 801 NVLRIEVAITPDFEWNDGIHGKAGQP-IFKEDSSLLPILHIEVFLVNCKKVNE-SQLLVFTIPISDPLPSQIRHRAVSDN 878 (1230)
T ss_pred hhheeeeccCCceEEecccccccCce-eEeecCCCCcceeeeeehhhhhhhhh-hhheeEEeecccCCccceEEeeeccc
Confidence 99999999999999999999987777 99999999999999999999888775 88899999999999999999999999
Q ss_pred ccccceeEEecccccccCCCCCCCcccCCCCCccccccCchhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCc
Q 043190 638 WLHAEAFYCISFHNLALPQARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717 (1492)
Q Consensus 638 wl~~~~~~~i~~~~~~~p~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGK 717 (1492)
|++.+...+.+++++++|...++.++++++.|+|...|....++.++. .++|+|.+.|...++.+.++++.+|||+||
T Consensus 879 ~l~~e~~~~~s~~~~il~~~~~~~t~ll~l~plp~~~L~~~~~e~~~~--~fn~~q~~if~~~y~td~~~~~g~ptgsgk 956 (1230)
T KOG0952|consen 879 WLGAETVYPLSFQHLILPDNEPPLTELLDLRPLPSSALKNVVFEALYK--YFNPIQTQIFHCLYHTDLNFLLGAPTGSGK 956 (1230)
T ss_pred ccCCceeccccccceeccccccccccccccCCCcchhhccccHHHhhc--ccCCccceEEEEEeecchhhhhcCCccCcc
Confidence 999999999999999999999999999999999999999998888876 799999999999999999999999999999
Q ss_pred hHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhh
Q 043190 718 TISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGIS 797 (1492)
Q Consensus 718 T~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~ 797 (1492)
|.+|+++++..+...++.+++|++|.++|+.+..++|..++... |.++..++|+...+......++++|+||++|+...
T Consensus 957 t~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~-g~k~ie~tgd~~pd~~~v~~~~~~ittpek~dgi~ 1035 (1230)
T KOG0952|consen 957 TVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELP-GIKVIELTGDVTPDVKAVREADIVITTPEKWDGIS 1035 (1230)
T ss_pred hhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccC-CceeEeccCccCCChhheecCceEEcccccccCcc
Confidence 99999999999999999999999999999999999999988777 99999999999999888889999999999999999
Q ss_pred hcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCC
Q 043190 798 RNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKP 877 (1492)
Q Consensus 798 ~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~ 877 (1492)
|.|..+..+++++++|+||.|+++++|||+++.+.+++..+..+++..+|++++|..+.|+.++++|++..+. ++|.+
T Consensus 1036 Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dla~wl~~~~~--~nf~~ 1113 (1230)
T KOG0952|consen 1036 RSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDLADWLNIKDM--YNFRP 1113 (1230)
T ss_pred ccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHHHHHhCCCCc--CCCCc
Confidence 9999999999999999999999999999999999999998888899999999999999999999999999986 89999
Q ss_pred CccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHH
Q 043190 878 SVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957 (1492)
Q Consensus 878 ~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 957 (1492)
..||+|++.++.++++.++++++..|+++.+..++.+++..|+|||+.++++....|..|...+....++..|++.+..+
T Consensus 1114 svrpvp~~~~i~gfp~~~~cprm~smnkpa~qaik~~sp~~p~lifv~srrqtrlta~~li~~~~~~~~p~~fl~~de~e 1193 (1230)
T KOG0952|consen 1114 SVRPVPLEVHIDGFPGQHYCPRMMSMNKPAFQAIKTHSPIKPVLIFVSSRRQTRLTALDLIASCATEDNPKQFLNMDELE 1193 (1230)
T ss_pred ccccCCceEeecCCCchhcchhhhhcccHHHHHHhcCCCCCceEEEeecccccccchHhHHhhccCCCCchhccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 958 ~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
++..+..+.|..|+.++++|++.||+|+...||..
T Consensus 1194 ~e~~~~~~~d~~Lk~tl~Fgi~lhhagl~~~dr~~ 1228 (1230)
T KOG0952|consen 1194 LEIIMSKVRDTNLKLTLPFGIGLHHAGLIENDRKI 1228 (1230)
T ss_pred HHHHHHHhcccchhhhhhhhhhhhhhhcccccccc
Confidence 99999999999999999999999999999998854
No 3
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.5e-103 Score=937.49 Aligned_cols=792 Identities=32% Similarity=0.537 Sum_probs=712.7
Q ss_pred chhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC---------CCceEEEEcccHHHH
Q 043190 677 NNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ---------SDMKVVYIAPLKAIV 747 (1492)
Q Consensus 677 ~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~---------~~~~~l~i~P~r~La 747 (1492)
.+...+++|...||++|+.+.++++....|+++|||||+|||.++++.|++.+..+ ...+++|++|+++|+
T Consensus 298 ~Wnq~aF~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLv 377 (1674)
T KOG0951|consen 298 KWNQPAFFGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALV 377 (1674)
T ss_pred chhhhhcccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHH
Confidence 34445677999999999999999998889999999999999999999999988654 245999999999999
Q ss_pred HHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccH
Q 043190 748 RERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPI 827 (1492)
Q Consensus 748 ~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~ 827 (1492)
+++...+.+++..+ |++|...|||..........++|+|||||+|+.+.|+...+...+-++++||||+|++.++||+.
T Consensus 378 qE~VgsfSkRla~~-GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpv 456 (1674)
T KOG0951|consen 378 QEMVGSFSKRLAPL-GITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPV 456 (1674)
T ss_pred HHHHHHHHhhcccc-CcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchH
Confidence 99999999999887 99999999999988888899999999999999999998888888899999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhH
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPA 907 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~ 907 (1492)
++.++.|...-........|++|+|||+||++|++.|++++..++|.|++++||+|+...+.++..+....+.+.|+..+
T Consensus 457 LESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~ 536 (1674)
T KOG0951|consen 457 LESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEAC 536 (1674)
T ss_pred HHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccccCCchHHHHHHHHHH
Confidence 99999999887777788999999999999999999999999999999999999999999999999888888889999999
Q ss_pred HHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCC---hHHHHHHHhhcCcHHHHHHhccceEeecCC
Q 043190 908 YAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP---EEDLQMVLSQVTDQNLRQTLQFGIGLHHAG 984 (1492)
Q Consensus 908 ~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~ 984 (1492)
|+.+..+...+++||||.+|+++-++|+.++..+...+....|+..+ .+-+.......++..|++++++|+++||+|
T Consensus 537 yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAG 616 (1674)
T KOG0951|consen 537 YEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAG 616 (1674)
T ss_pred HHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccC
Confidence 99999998889999999999999999999997766555444444432 233334456678899999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 985 LNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 985 l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
|++.+|..+++.|++|+++|+|+|.+++||||+|+.+|||.||+.||+..++|.++++.+.+||.|||||+++|..|..+
T Consensus 617 l~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegi 696 (1674)
T KOG0951|consen 617 LNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGI 696 (1674)
T ss_pred CCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCcee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcc-cHH
Q 043190 1065 ILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAE-GLS 1143 (1492)
Q Consensus 1065 ~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~-~~~ 1143 (1492)
+.+..++..+|..++++.+|+||++...|.+.+|+|++.| +++..|+++|+.+||+|.|+.+||..|+..+...+ .+.
T Consensus 697 iit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~G-v~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le 775 (1674)
T KOG0951|consen 697 IITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLG-VRSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLE 775 (1674)
T ss_pred eccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcc-hhhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHH
Confidence 9999999999999999999999999999999999999999 99999999999999999999999999999876543 345
Q ss_pred HHHHHHHHHHHHHhHHCCCceecCCc--cccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCC
Q 043190 1144 SYLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVR 1221 (1492)
Q Consensus 1144 ~~l~~~i~~~l~~L~~~~~i~~~~~~--~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R 1221 (1492)
....+++++|...|.++|+|..+... +++|++|+++|+||+.+.++..+.+.+++.++.-++..+++.+.||+.+++|
T Consensus 776 ~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yyi~~~s~~~yn~~L~~~~~~i~lfrifs~seEfk~~svr 855 (1674)
T KOG0951|consen 776 QRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYYITHGSMATYNELLKETMSEIDLFRIFSKSEEFKYVSVR 855 (1674)
T ss_pred HHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceeeeecchHHHHHhhhhhhhccchhhhhhhhccccccCCcc
Confidence 55568999999999999999988644 9999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHhhcccceeecCCCCCChhHHHHHHHHHHhcCCCCCCcchHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHH
Q 043190 1222 HNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSI 1301 (1492)
Q Consensus 1222 ~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~l~r~~l~~~~l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~ 1301 (1492)
.+|+..++.|...+|+|+. ..+++|..|+++|+|+|+|++++....+..|+.+|-+.+-|+.+|+.+|+..+||...+.
T Consensus 856 ~~ek~el~~l~~~vpIpir-e~l~~p~akinvllq~yiS~lk~eG~al~~dmv~i~q~agRl~Ra~fei~l~rgw~~~~~ 934 (1674)
T KOG0951|consen 856 EEEKMELAKLLERVPIPIR-ENLDEPSAKINVLLQSYISQLKLEGFALTSDMVYITQSAGRLFRALFEIVLKRGWAGLAQ 934 (1674)
T ss_pred HHHHHHhhhhcccCCcCch-hccccchHHHHHHHHHHHhhcccccceeeeeEEEeccchHHHHHHHHHHHhhcCcchHHH
Confidence 9999999999999999984 568899999999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhC-CchHHHHHHHhcCCCceEEE
Q 043190 1302 TCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIG-NFPVSRLHQDLQRFPRIQVK 1380 (1492)
Q Consensus 1302 ~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~-~~~~~~i~~~~~~~P~i~i~ 1380 (1492)
-++.+|+|+.+++|+. ..||+|+|++..+.++.+.++.+ .+..+..+++.++..+++ ++.+.-+..++.+||++.+.
T Consensus 935 ~~l~~ck~v~~r~w~~-~~plrqf~~~~~ev~~~lE~k~~-~~~r~~~l~~~elg~lI~~~k~G~~l~~~~~~fpk~s~~ 1012 (1674)
T KOG0951|consen 935 MALNLCKMVEKRMWPT-QTPLRQFKGCPKEVLRRLEKKEL-PWGRYYDLDPAELGELIGVPKMGKPLHLFIRQFPKLSVS 1012 (1674)
T ss_pred HHHHhHhHhhhhcccc-cCchhhcCCCCHHHHHHHHhccC-cchhhhccCHHHHHHHhcCcccChhHHHHHHhcccceee
Confidence 9999999999999998 99999999999999999988776 467888888777777765 55678888899999999999
Q ss_pred EEEEeccCCCCCeEEEEEEEEeccCCCCCCccccccCCCCccceEEEEEEeCCCCeEEEEEEeecCC-cceEEEEecCCC
Q 043190 1381 LRLQRRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSD-RLNTHMELPSGI 1459 (1492)
Q Consensus 1381 ~~~~~~~~~~~~~~~l~v~l~~~~~~~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~r~~~~~-~~~~~~~~p~~~ 1459 (1492)
..+++ ...+.+.+.++++.... ++..+|. -.|.||+++.|....+++.+.-.-+++ ...+.|++|...
T Consensus 1013 ~~vqp---itr~~~~~~l~i~~~f~--wd~~vh~------~~e~F~i~ved~dge~il~~e~~~~~k~~~~v~ft~~~~~ 1081 (1674)
T KOG0951|consen 1013 AHVQP---ITRSVYRVELTITPDFD--WDDKVHG------SVEPFWIIVEDTDGEKILHHEFFLLKKKEHTVNFTVPLFE 1081 (1674)
T ss_pred eeeee---eeeeEEEEEEEEeeccc--chhhhcc------cccceEEEEEccCccceeeeeeEEeccCceEEEEEeecCC
Confidence 88887 33455555555555432 2222332 357899999999999999876665533 456889999876
Q ss_pred CCcceEEEEEEeCCCCCccEEEEEEE
Q 043190 1460 TTFQGMKLVVVSDCYLGFEQEHSIEA 1485 (1492)
Q Consensus 1460 ~~~~~~~v~~~sd~y~G~D~~~~i~~ 1485 (1492)
+...|.+.++||.|+|....+++.+
T Consensus 1082 -~pP~~fi~lvSd~wl~s~~~~Pvsf 1106 (1674)
T KOG0951|consen 1082 -PPPQYFIRLVSDRWLHSETVLPVSF 1106 (1674)
T ss_pred -CCCceEEEEeeccccCCCcccccch
Confidence 4777999999999999999988875
No 4
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=7.6e-103 Score=924.12 Aligned_cols=791 Identities=31% Similarity=0.499 Sum_probs=675.3
Q ss_pred ccCCCCCCCcccCCCCCccccccCchhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC
Q 043190 653 ALPQARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ 732 (1492)
Q Consensus 653 ~~p~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~ 732 (1492)
..|...+.+ ...-..+.++.|+......+|+|++||.+|+.+|+.+++++.|+|||||||||||.+|+++|++.+.++
T Consensus 77 ~~P~s~~~~--~~~~k~~~isdld~~~rk~~f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~ 154 (1230)
T KOG0952|consen 77 KIPASVPMP--MDGEKLLSISDLDDVGRKGFFSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEH 154 (1230)
T ss_pred ecCccCCCc--cccccceeEEecchhhhhhcccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhh
Confidence 345444433 222334455556544335888999999999999999999999999999999999999999999998852
Q ss_pred --------CCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccC-c
Q 043190 733 --------SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHS-R 803 (1492)
Q Consensus 733 --------~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~-~ 803 (1492)
++.|+|||+|++|||.++++.|.++|..+ |++|..+|||+.....+...++|+|+|||+||.+.|++.. .
T Consensus 155 ~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~-gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~ 233 (1230)
T KOG0952|consen 155 EEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL-GISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDS 233 (1230)
T ss_pred ccccccccCCceEEEEechHHHHHHHHHHHhhhcccc-cceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccch
Confidence 36799999999999999999999999888 9999999999998877788999999999999999999875 4
Q ss_pred cccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCC-cceeEecCCCcccc
Q 043190 804 NYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVG-EIGLFNFKPSVRPV 882 (1492)
Q Consensus 804 ~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~-~~~~~~~~~~~r~~ 882 (1492)
.+++.+++|||||+|++.++||+++|.+++|+.+.....+..+|+||+|||+||.+|++.||+++ ..+++.|+..+||+
T Consensus 234 ~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPv 313 (1230)
T KOG0952|consen 234 ALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPV 313 (1230)
T ss_pred hhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeeccccccc
Confidence 56789999999999999999999999999999888878889999999999999999999999997 56899999999999
Q ss_pred CcEEEEeccCCccccccccccChhHHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHH
Q 043190 883 PLEVHIQGYPGKFYCPRMNSMNKPAYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMV 961 (1492)
Q Consensus 883 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1492)
|+...+.+.+.+........+...++..+.+ ...+.+++|||++|+.+..+|+.|++.....+....|...+
T Consensus 314 pL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~------- 386 (1230)
T KOG0952|consen 314 PLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSP------- 386 (1230)
T ss_pred ceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCCh-------
Confidence 9999999887763333333444445555443 46789999999999999999999999887766655555433
Q ss_pred HhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC
Q 043190 962 LSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP 1041 (1492)
Q Consensus 962 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~ 1041 (1492)
.++.+.++...|+++||+||..+||..+++.|+.|.++||+||++++||||+|+..|||.||+.||.+.+.+.|+.
T Consensus 387 ----~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlg 462 (1230)
T KOG0952|consen 387 ----RNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLG 462 (1230)
T ss_pred ----hhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEecCCcccccccCceeeeh
Confidence 3467888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchh
Q 043190 1042 ITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYL 1121 (1492)
Q Consensus 1042 ~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~ 1121 (1492)
+.+.+|+.||||||+||..|.++++++.+..+.|..++.+..|+||+|...|.|++||||+.|++.++++|++||++||+
T Consensus 463 ilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dnLnAEi~LgTVt~VdeAVeWL~yTyl 542 (1230)
T KOG0952|consen 463 ILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDNLNAEISLGTVTNVDEAVEWLKYTYL 542 (1230)
T ss_pred HHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHhhhhheeeceeecHHHHHHHhhceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecccCccccCCCCC---CcccHHHHHHHHHHHHHHHhHHCCCceecCCc--cccccchhhhhhccccHHHHHHHHhcc
Q 043190 1122 FRRLAINPAYYGLEDT---EAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVTVSMFGSNI 1196 (1492)
Q Consensus 1122 ~~rl~~np~~y~~~~~---~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~~~--~~~T~lG~~~s~~~i~~~T~~~f~~~l 1196 (1492)
|.||.+||.+||+... ..+.+.+.+.+++..++.+|....+|..|..+ +.+|++||+||+|||+++|++.|++..
T Consensus 543 YVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~stdlGR~aS~yYik~ETme~~nn~~ 622 (1230)
T KOG0952|consen 543 YVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLKSTDLGRVASNYYIKYETMETFNNLP 622 (1230)
T ss_pred EEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEcccchhhhhhhhhhhhHHHHHHHhcc
Confidence 9999999999999865 45678889999999999999999999998877 999999999999999999999999998
Q ss_pred CCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhccc--ceeecCCCCCChhHHHHHHHHHHhcCCCCCCcchHhhHH
Q 043190 1197 GPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRV--RFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLK 1274 (1492)
Q Consensus 1197 ~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~--~~~~~~~~~~~~~~K~~lLlqa~l~r~~l~~~~l~~D~~ 1274 (1492)
++..+..++|.++|.|.||+.+.+|++|.+.+++|+... .++.. ..+-|+++|+|+|++|-.+...+|..|..
T Consensus 623 k~~~se~~iL~lis~aeEfs~ik~R~eE~k~l~el~~~~~~~~~~~-----~~~gk~nil~q~~Is~~~~~~f~L~sD~~ 697 (1230)
T KOG0952|consen 623 KSFYSEDDILALISMAEEFSQIKVREEEKKELKELNEDSCEKYPFG-----GEKGKVNILLQAYISRTEVKDFSLMSDSL 697 (1230)
T ss_pred cccCCHHHHHHHHHhhHhhhhhhhhhhhHHHHHHHHhccccccccc-----ccchhHHHHHHhhhhccceeeeeeccCcc
Confidence 989999999999999999999999999999999998542 22321 12679999999999999988899999999
Q ss_pred HHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHH
Q 043190 1275 SVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKEN 1354 (1492)
Q Consensus 1275 ~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~ 1354 (1492)
++.+++.||.+|+.+++...+|...+.+++.|++||..++|.. ..++.|++..-. ++.. ++. .+..+...+
T Consensus 698 yv~qna~ri~ralf~i~~~~~~~~~~~~~l~l~k~ier~mw~~-~~~l~qf~~~~~---~~~~-~~~----~l~~L~~~~ 768 (1230)
T KOG0952|consen 698 YVAQNAGRISRALFQIVLRQNWHLLSNRMLNLCKRIERRMWDF-FIPLKQFTLLLN---RKER-KKL----TLLLLRKDE 768 (1230)
T ss_pred cccccHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh-hhhhhcCCcccc---hhhh-hcc----hHHhhhhhh
Confidence 9999999999999999999999988888999999999999998 899999987765 2322 221 455555566
Q ss_pred HhhhhCCchHHHHHHHhcCCCceEEEEEEEeccCCCCCeEEEEEEEEeccCCCCCCccccccCCCCccceEEEEEEeCCC
Q 043190 1355 LQTVIGNFPVSRLHQDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNT 1434 (1492)
Q Consensus 1355 ~~~~l~~~~~~~i~~~~~~~P~i~i~~~~~~~~~~~~~~~~l~v~l~~~~~~~~~~~~~~p~~p~~k~e~w~~~v~d~~~ 1434 (1492)
+..++...... .+++..+|.++++..+.+. ..+...+.+.+... +.|.-..+..-... +++.|.+.
T Consensus 769 ~g~~w~~~~~~--~k~l~~ip~v~v~a~~~p~---t~~vlri~~~~~~~-------f~w~~~~hg~~g~~--i~~ed~~~ 834 (1230)
T KOG0952|consen 769 LGELWHNVPYG--LKQLSGIPLVNVEALIQPI---TRNVLRIEVAITPD-------FEWNDGIHGKAGQP--IFKEDSSL 834 (1230)
T ss_pred hccccccCchh--hhhhccCCceehhhhhccc---hhhhheeeeccCCc-------eEEecccccccCce--eEeecCCC
Confidence 66666554433 8889999999998877662 23444444444433 23333222222222 88999998
Q ss_pred CeEEEEEEeecCCcc-----eEEEEecCCCCCcceEEEEEEeCCCCCccEEEEEEE
Q 043190 1435 SELYALKRISFSDRL-----NTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEA 1485 (1492)
Q Consensus 1435 ~~l~~~~r~~~~~~~-----~~~~~~p~~~~~~~~~~v~~~sd~y~G~D~~~~i~~ 1485 (1492)
+.++.++..-++... ...|.+|...|-...+..++.||.|+|++..+.+.+
T Consensus 835 ~~i~h~e~~~~~~~~~~~s~~lvf~ipis~pLps~~~~~~~s~~~l~~e~~~~~s~ 890 (1230)
T KOG0952|consen 835 LPILHIEVFLVNCKKVNESQLLVFTIPISDPLPSQIRHRAVSDNWLGAETVYPLSF 890 (1230)
T ss_pred CcceeeeeehhhhhhhhhhhheeEEeecccCCccceEEeeecccccCCceeccccc
Confidence 899988777553332 256678887777788999999999999999887764
No 5
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=7e-86 Score=848.72 Aligned_cols=652 Identities=26% Similarity=0.386 Sum_probs=549.3
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
||.+|+|+|.+|++..+.+++|++++||||||||++|++|+++.+.. +++++|++|+++||.|++++|++ +... |.
T Consensus 20 g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--~~kal~i~P~raLa~q~~~~~~~-~~~~-g~ 95 (737)
T PRK02362 20 GIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--GGKALYIVPLRALASEKFEEFER-FEEL-GV 95 (737)
T ss_pred CCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHHHH-hhcC-CC
Confidence 89999999999999866689999999999999999999999998863 78999999999999999999985 6554 89
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
++..++|+...+......++|+|+|||+++.++++. ..++++++++|+||+|++++ .||+.++.++++++...
T Consensus 96 ~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~--~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~---- 169 (737)
T PRK02362 96 RVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNG--APWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN---- 169 (737)
T ss_pred EEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcC--hhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC----
Confidence 999999998776666677899999999999999863 34688999999999999975 79999999999998653
Q ss_pred CceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccC----hhHHHHHh-hcCCCC
Q 043190 844 RAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMN----KPAYAAIC-THSPTK 918 (1492)
Q Consensus 844 ~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~-~~~~~~ 918 (1492)
...|+|++|||++|++++++|++... +.+.+||+++...+.......+......+. ...+..+. ....++
T Consensus 170 ~~~qii~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (737)
T PRK02362 170 PDLQVVALSATIGNADELADWLDAEL-----VDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEEGG 244 (737)
T ss_pred CCCcEEEEcccCCCHHHHHHHhCCCc-----ccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHcCC
Confidence 46899999999999999999998754 467788988876554222111111111111 12222222 234678
Q ss_pred CeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhc-------CcHHHHHHhccceEeecCCCCHHHHH
Q 043190 919 PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQV-------TDQNLRQTLQFGIGLHHAGLNDKDRS 991 (1492)
Q Consensus 919 ~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~v~~~h~~l~~~~R~ 991 (1492)
++||||+|++.|+.+|..|....... ........+....+.+ .+..|..++..||++|||||++.+|.
T Consensus 245 ~~LVF~~sr~~~~~~a~~L~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~ 319 (737)
T PRK02362 245 QCLVFVSSRRNAEGFAKRAASALKKT-----LTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRE 319 (737)
T ss_pred CeEEEEeCHHHHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHH
Confidence 99999999999999999997764321 0011112222222222 45678899999999999999999999
Q ss_pred HHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 992 LVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 992 ~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
.+++.|++|.++|||||+++++|||+|++++||+++++||+.. ++.++|..+|.||+|||||+|+|..|.|++++.+.+
T Consensus 320 ~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~-g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 320 LVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGA-GMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred HHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCC-CceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 9999999999999999999999999999999999999999876 457899999999999999999999999999998753
Q ss_pred --HHHHHHhh-cCCCceeecccc--cchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHH
Q 043190 1072 --KSFYKKFL-YEPFPVESSLRD--QLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYL 1146 (1492)
Q Consensus 1072 --~~~~~~~l-~~~~pies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l 1146 (1492)
.+.|++++ .++.|++|.+.. .|.++++++|+.|.+.+.+|+.+|+++||+|++. ..+.++
T Consensus 399 ~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~---------------~~~~~l 463 (737)
T PRK02362 399 ELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQT---------------DDTGRL 463 (737)
T ss_pred hHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhc---------------cchHHH
Confidence 45678888 588999999954 6999999999999999999999999999998742 124688
Q ss_pred HHHHHHHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCC--CHHHHHHHHhCCCCCCCCcCCCCh
Q 043190 1147 SRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDT--SLEVFLHILSGASEYDELPVRHNE 1224 (1492)
Q Consensus 1147 ~~~i~~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~--~~~~ll~ils~a~Ef~~i~~R~~e 1224 (1492)
+++++++++.|.+.|||+.+++.+.+|++|+++|+||++|.|+..|.++++... +..++|+++|.++||..+++|++|
T Consensus 464 ~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e 543 (737)
T PRK02362 464 ERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYELYLRSGD 543 (737)
T ss_pred HHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCccccccccChhH
Confidence 999999999999999999887779999999999999999999999998887654 778999999999999999999999
Q ss_pred hHHHHHhh--------cccceeecCCCCCC--hhHHHHHHHHHHhcCCCCCC--cch---HhhHHHHHHhHHHHHHHHHH
Q 043190 1225 DNHNEALS--------QRVRFAVDNNRLDD--PHVKANLLFQAHFSRLDLPI--SDY---VTDLKSVLDQSIRIIQAMID 1289 (1492)
Q Consensus 1225 ~~~l~~l~--------~~~~~~~~~~~~~~--~~~K~~lLlqa~l~r~~l~~--~~l---~~D~~~il~~~~rl~~a~~~ 1289 (1492)
...+.++. .++|++.+...+.. ++.|+++|||+||+|.+++. ..| .+|++.+++++.||++|+++
T Consensus 544 ~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l~~a~~~ 623 (737)
T PRK02362 544 YEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWLLHAAER 623 (737)
T ss_pred HHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHHHHHHHH
Confidence 98888764 44555443333333 78999999999999999762 223 78999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHH
Q 043190 1290 ICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQ 1369 (1492)
Q Consensus 1290 i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~ 1369 (1492)
+|... |+..+..+++|+|||.||+|++ ..||+||||+|+.++++|+++||+|+.||++++++++..+++++..++|.+
T Consensus 624 i~~~~-~~~~~~~~~~l~~~l~~gv~~~-~~~L~~ip~i~~~~a~~l~~~gi~s~~dl~~~~~~~l~~~~g~~~~~~i~~ 701 (737)
T PRK02362 624 LASEL-DLDLARAARELEKRVEYGVREE-LLDLVGLRGVGRVRARRLYNAGIESRADLRAADKSVVLAILGEKIAENILE 701 (737)
T ss_pred HHHHh-CccHHHHHHHHHHHHHhCCCHH-HHHHhCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHCHHHHHHHHH
Confidence 98765 4566889999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred HhcCC
Q 043190 1370 DLQRF 1374 (1492)
Q Consensus 1370 ~~~~~ 1374 (1492)
.++..
T Consensus 702 ~~~~~ 706 (737)
T PRK02362 702 QAGRR 706 (737)
T ss_pred HhCcc
Confidence 98844
No 6
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=7.3e-82 Score=809.43 Aligned_cols=643 Identities=26% Similarity=0.400 Sum_probs=526.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+.+|+|+|.++++..+.+++|++++||||||||++|++|+++.+.. +++++||++|+++|+.|++++|.. +... |.
T Consensus 20 g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~-~~~~-g~ 96 (720)
T PRK00254 20 GIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-EGGKAVYLVPLKALAEEKYREFKD-WEKL-GL 96 (720)
T ss_pred CCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHH-Hhhc-CC
Confidence 99999999999999855589999999999999999999999998764 368999999999999999999986 5544 89
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
++..++|+...+.....+++|+|+|||+|+.++++ ...++++++++|+||+|++++ .+|+.++.+++++.
T Consensus 97 ~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~--~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~l~------- 167 (720)
T PRK00254 97 RVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKLVVADEIHLIGSYDRGATLEMILTHML------- 167 (720)
T ss_pred EEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhC--CchhhhcCCEEEEcCcCccCCccchHHHHHHHHhcC-------
Confidence 99999999876666667889999999999999886 335688999999999999975 69999999988753
Q ss_pred CceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEe--ccCCcccccc---ccccChhHHHHHhhcCCCC
Q 043190 844 RAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQ--GYPGKFYCPR---MNSMNKPAYAAICTHSPTK 918 (1492)
Q Consensus 844 ~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~--~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 918 (1492)
...|+|++|||++|++++++|++... +.+..||+++...+. ++........ ...+...++..+ ..++
T Consensus 168 ~~~qiI~lSATl~n~~~la~wl~~~~-----~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~ 239 (720)
T PRK00254 168 GRAQILGLSATVGNAEELAEWLNAEL-----VVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAV---KKGK 239 (720)
T ss_pred cCCcEEEEEccCCCHHHHHHHhCCcc-----ccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHH---HhCC
Confidence 46899999999999999999998754 456778888754322 1110000000 011112222323 2468
Q ss_pred CeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCC-hHHHHHHHhh----cCcHHHHHHhccceEeecCCCCHHHHHHH
Q 043190 919 PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP-EEDLQMVLSQ----VTDQNLRQTLQFGIGLHHAGLNDKDRSLV 993 (1492)
Q Consensus 919 ~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 993 (1492)
++||||+|++.|+.+|..|...+.. ++... ..++...... ..+..|.+++..||++|||+|++++|..+
T Consensus 240 ~vLVF~~sr~~~~~~a~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~v 313 (720)
T PRK00254 240 GALVFVNTRRSAEKEALELAKKIKR------FLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLI 313 (720)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHH
Confidence 9999999999999999988765431 11111 1222333222 34677888999999999999999999999
Q ss_pred HHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc-H
Q 043190 994 EELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK-K 1072 (1492)
Q Consensus 994 ~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~-~ 1072 (1492)
++.|++|.++|||||+++++|||+|++++||.++++|+. .++.++|..+|.||+|||||+|+|..|.+++++...+ .
T Consensus 314 e~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~--~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~ 391 (720)
T PRK00254 314 EDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSN--FGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPS 391 (720)
T ss_pred HHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCC--CCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchH
Confidence 999999999999999999999999999999999999963 3456789999999999999999999999999998755 4
Q ss_pred HHHHHhh-cCCCceeeccc--ccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHH
Q 043190 1073 SFYKKFL-YEPFPVESSLR--DQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRL 1149 (1492)
Q Consensus 1073 ~~~~~~l-~~~~pies~l~--~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~ 1149 (1492)
+.+++++ .++.++.+.+. +.|.++++++|+.+.+.+.+|+++|+++||+|. +||++|+ +.+.
T Consensus 392 ~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~---~~~~~~~------------~~~~ 456 (720)
T PRK00254 392 KLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAH---QRKDLYS------------LEEK 456 (720)
T ss_pred HHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHH---hhcChHh------------HHHH
Confidence 5677775 33444555543 247889999999999999999999999999995 5777765 3356
Q ss_pred HHHHHHHhHHCCCceecCC-ccccccchhhhhhccccHHHHHHHHhccCC---CCCHHHHHHHHhCCCCCCCCcCCCChh
Q 043190 1150 VQNTFEDLEDSGCVKMTED-TVEPTMLGTIASQYYLSYVTVSMFGSNIGP---DTSLEVFLHILSGASEYDELPVRHNED 1225 (1492)
Q Consensus 1150 i~~~l~~L~~~~~i~~~~~-~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~---~~~~~~ll~ils~a~Ef~~i~~R~~e~ 1225 (1492)
+++++..|.++|||+.+++ .+.+|++|+++|+|||+|.|+..|.+.++. ..+..++|+++|.++||..+++|++|.
T Consensus 457 v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~r~~e~ 536 (720)
T PRK00254 457 AKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNYSRKEM 536 (720)
T ss_pred HHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCcchhhH
Confidence 8889999999999998764 499999999999999999999999888765 678899999999999999999999999
Q ss_pred HHHHHh--------hcccceeecCCCCCC--hhHHHHHHHHHHhcCCCCCCcch------HhhHHHHHHhHHHHHHHHHH
Q 043190 1226 NHNEAL--------SQRVRFAVDNNRLDD--PHVKANLLFQAHFSRLDLPISDY------VTDLKSVLDQSIRIIQAMID 1289 (1492)
Q Consensus 1226 ~~l~~l--------~~~~~~~~~~~~~~~--~~~K~~lLlqa~l~r~~l~~~~l------~~D~~~il~~~~rl~~a~~~ 1289 (1492)
..+.++ ...+|++.+. .+.. ++.|+++|||+|++|++++ ..+ .+|++.+++++.||++|+++
T Consensus 537 ~~l~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~k~~~ll~~~~~~~~~~-~~~~~~~~~~gd~~~~~~~~~~l~~a~~~ 614 (720)
T PRK00254 537 EDLLDEAYEMEDRLYFNIPYWEDY-KFQKFLRAFKTAKVLLDWINEVPEG-EIVETYNIDPGDLYRILELADWLMYSLIE 614 (720)
T ss_pred HHHHHHHHhhcccccccCCcchhh-HHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence 888743 3334443221 2223 7899999999999999987 333 89999999999999999999
Q ss_pred HHHhcCCHHHHHHHH-HHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHH
Q 043190 1290 ICANSGWLSSSITCM-HLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSR 1366 (1492)
Q Consensus 1290 i~~~~~~~~~~~~~l-~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~ 1366 (1492)
+++..|+....++++ +|+|||+||+|++ .++|.|+||+|+.++++|.++|+.|+.++.+++.+++.++ ++++.++.
T Consensus 615 i~~~~~~~~~~~~~l~~l~~rl~~g~~~~-~~~L~~ipgig~~~~~~l~~~g~~s~~~i~~a~~~el~~~~gi~~~~a~~ 693 (720)
T PRK00254 615 LYKLFEPKQEVLDYLETLHLRVKHGVREE-LLELMRLPMIGRKRARALYNAGFRSIEDIVNAKPSELLKVEGIGAKIVEG 693 (720)
T ss_pred HHHHhCcchhHHHHHHHHHHHHHcCCCHH-HhhhhcCCCCCHHHHHHHHHccCCCHHHHHhCCHHHHhcCCCCCHHHHHH
Confidence 999766544444444 5999999999998 9999999999999999999999999999999999999998 77888899
Q ss_pred HHHHhcC
Q 043190 1367 LHQDLQR 1373 (1492)
Q Consensus 1367 i~~~~~~ 1373 (1492)
|.++++.
T Consensus 694 i~~~~~~ 700 (720)
T PRK00254 694 IFKHLGV 700 (720)
T ss_pred HHHHhcc
Confidence 9999873
No 7
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=7.8e-78 Score=770.29 Aligned_cols=635 Identities=27% Similarity=0.371 Sum_probs=519.9
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
+|+ |+|+|.++++.+. +++|++++||||||||+++++++++.+.. +++++|++|+++||.|++++|.+ +... |.
T Consensus 20 ~~~-l~~~Q~~ai~~l~-~~~nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P~raLa~q~~~~~~~-l~~~-g~ 93 (674)
T PRK01172 20 DFE-LYDHQRMAIEQLR-KGENVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEELSR-LRSL-GM 93 (674)
T ss_pred CCC-CCHHHHHHHHHHh-cCCcEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEechHHHHHHHHHHHHH-Hhhc-CC
Confidence 666 9999999999986 88999999999999999999999998765 67999999999999999999986 5443 88
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
++...+|+..........++|+|+|||+++.+++++. ..+++++++|+||+|++++ .+|+.++.++++++.. .
T Consensus 94 ~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~--~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~----~ 167 (674)
T PRK01172 94 RVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDP--YIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYV----N 167 (674)
T ss_pred eEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCCh--hHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhc----C
Confidence 9999999887665555678999999999999998743 4588999999999999875 7999999999988754 3
Q ss_pred CceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhh-cCCCCCeeE
Q 043190 844 RAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICT-HSPTKPVLI 922 (1492)
Q Consensus 844 ~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LI 922 (1492)
.+.|+|++|||++|.+++++|++... +....||+++...+........... ..........+.. ...++++||
T Consensus 168 ~~~riI~lSATl~n~~~la~wl~~~~-----~~~~~r~vpl~~~i~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~vLV 241 (674)
T PRK01172 168 PDARILALSATVSNANELAQWLNASL-----IKSNFRPVPLKLGILYRKRLILDGY-ERSQVDINSLIKETVNDGGQVLV 241 (674)
T ss_pred cCCcEEEEeCccCCHHHHHHHhCCCc-----cCCCCCCCCeEEEEEecCeeeeccc-ccccccHHHHHHHHHhCCCcEEE
Confidence 47899999999999999999998764 4667888888765543221111000 0001112222222 346789999
Q ss_pred EecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCc
Q 043190 923 FVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKI 1002 (1492)
Q Consensus 923 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 1002 (1492)
||++++.|+.++..|.+....... + ....+ .....+..+.+++..||++|||+|++++|..+++.|++|.+
T Consensus 242 F~~sr~~~~~~a~~L~~~~~~~~~---~-~~~~~-----~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i 312 (674)
T PRK01172 242 FVSSRKNAEDYAEMLIQHFPEFND---F-KVSSE-----NNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYI 312 (674)
T ss_pred EeccHHHHHHHHHHHHHhhhhccc---c-ccccc-----ccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCC
Confidence 999999999999999876543211 0 00000 02234567888889999999999999999999999999999
Q ss_pred eEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc-HHHHHHhh-c
Q 043190 1003 QVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK-KSFYKKFL-Y 1080 (1492)
Q Consensus 1003 ~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~-~~~~~~~l-~ 1080 (1492)
+|||||+++++|+|+|+..|||.+++.|++... .++|..+|.||+|||||+|+|..|.+++++...+ .+.+++++ .
T Consensus 313 ~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~--~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~ 390 (674)
T PRK01172 313 KVIVATPTLAAGVNLPARLVIVRDITRYGNGGI--RYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSG 390 (674)
T ss_pred eEEEecchhhccCCCcceEEEEcCceEeCCCCc--eeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcC
Confidence 999999999999999999999999998886543 4579999999999999999999999999987655 57788888 7
Q ss_pred CCCceeecccccchhh--hHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhH
Q 043190 1081 EPFPVESSLRDQLHDH--FNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLE 1158 (1492)
Q Consensus 1081 ~~~pies~l~~~l~~~--l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~ 1158 (1492)
++.|++|.+......+ ++++|+.|.+.+.+|+.+|+++||+|++ |+ .+++++.|+++++.|.
T Consensus 391 ~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~---~~-------------~~~l~~~v~~~l~~L~ 454 (674)
T PRK01172 391 EPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQ---NG-------------VDEIDYYIESSLKFLK 454 (674)
T ss_pred CCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhc---Cc-------------hHHHHHHHHHHHHHHH
Confidence 8999999998764444 5599999999999999999999999973 21 2467899999999999
Q ss_pred HCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhccccee
Q 043190 1159 DSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFA 1238 (1492)
Q Consensus 1159 ~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~ 1238 (1492)
++|||+.+ +.+.+|++|+++|+||++|.|+..|.++++...+...+|+++|.|+|| +|+|++|+..+.++...++.
T Consensus 455 ~~~~i~~~-~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~~e~--~~~~~~~~~~~~~~~~~~~~- 530 (674)
T PRK01172 455 ENGFIKGD-VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLCREI--IPANTRDDYYAMEFLEDIGV- 530 (674)
T ss_pred HCCCcccC-CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcCccc--cccccchHHHHHHHHHHhcc-
Confidence 99999743 458999999999999999999999999999988999999999999999 89999999888888776653
Q ss_pred ecCCCCCChhHHHHHHHHHHhcCCCCCC--cc---hHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhh
Q 043190 1239 VDNNRLDDPHVKANLLFQAHFSRLDLPI--SD---YVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQG 1313 (1492)
Q Consensus 1239 ~~~~~~~~~~~K~~lLlqa~l~r~~l~~--~~---l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~ 1313 (1492)
.....++.|+++|||+|++|++++. .. ..+|+..+++.+.|+..|+..++... +......+-.|.++|+||
T Consensus 531 ---~~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~l~~~~~rl~~g 606 (674)
T PRK01172 531 ---IDGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWISYSLARLSSIY-KPEMRRKLEILNIRIKEG 606 (674)
T ss_pred ---ccchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHcC
Confidence 1234688999999999999999872 12 26788888888888888888887653 222222222366669999
Q ss_pred cccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcC
Q 043190 1314 LWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQR 1373 (1492)
Q Consensus 1314 ~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~ 1373 (1492)
+|++ .+||+|||||++.++++|+++|++|+.||++++++++..+ +++.+.++|.+.+++
T Consensus 607 v~~~-~~~L~~ip~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~~~~~i~~~~~~ 667 (674)
T PRK01172 607 IRED-LIDLVLIPKVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDTLANAIVNRAMK 667 (674)
T ss_pred CCHH-HHhhcCCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHHHHHHHHHHHHH
Confidence 9998 9999999999999999999999999999999999999888 567777888776654
No 8
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=8.7e-69 Score=667.20 Aligned_cols=642 Identities=30% Similarity=0.419 Sum_probs=501.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
++.+++|.|+.++...+.+++|+|||+|||||||++++++|++.+.++ +.+++||||+|+||.|++++|+ .+... |+
T Consensus 28 ~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-~~k~vYivPlkALa~Ek~~~~~-~~~~~-Gi 104 (766)
T COG1204 28 GIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-GGKVVYIVPLKALAEEKYEEFS-RLEEL-GI 104 (766)
T ss_pred ChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-CCcEEEEeChHHHHHHHHHHhh-hHHhc-CC
Confidence 665677777777766554689999999999999999999999998864 6899999999999999999998 56666 99
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC-CccHHHHHHHHHHHhhhccC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-RGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~-~g~~~~~i~~~l~~~~~~~~ 843 (1492)
+|...|||++.....+.+++|+|+|||+|+.++|+... ++..+++|||||+|++++. ||+.+|.++++++...
T Consensus 105 rV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~---- 178 (766)
T COG1204 105 RVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN---- 178 (766)
T ss_pred EEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhC----
Confidence 99999999998888889999999999999999998554 7899999999999999986 9999999999998654
Q ss_pred CceEEEEEcCCCCChHHHHHHhcCCcc-eeEecCCCccccCcEEEEeccCCccccccccccChhHHH-HHhhcCCCCCee
Q 043190 844 RAVRFIGLSTALANAGDLADWLGVGEI-GLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYA-AICTHSPTKPVL 921 (1492)
Q Consensus 844 ~~~~ii~lSATl~~~~~~~~~l~~~~~-~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~L 921 (1492)
...|++++|||+||++++++|++++.. ..+.+.+..++++....+.+...... .........++. .+.....++++|
T Consensus 179 ~~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~~~~~~~~~v~~~~~~~~qvL 257 (766)
T COG1204 179 ELIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLLIDNLALELVLESLAEGGQVL 257 (766)
T ss_pred cceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-cccccchHHHHHHHHHHHhcCCeEE
Confidence 358999999999999999999999865 45566667777777766665543332 111111122222 334457789999
Q ss_pred EEecChHHHHHHHHHHHHHHhcCCCCcccCC--CChHHHH-HHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHh
Q 043190 922 IFVSSRRQTRLTALDLIQFAASDETPRQFLG--MPEEDLQ-MVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFA 998 (1492)
Q Consensus 922 IF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 998 (1492)
|||+||+.+..+|..+............... ....... .......+..|.+++..|+++||+||+.++|..+++.|+
T Consensus 258 vFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr 337 (766)
T COG1204 258 VFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFR 337 (766)
T ss_pred EEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHh
Confidence 9999999999999999865433221111111 0011111 111122347889999999999999999999999999999
Q ss_pred cCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH-HHHHH
Q 043190 999 NNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK-SFYKK 1077 (1492)
Q Consensus 999 ~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~-~~~~~ 1077 (1492)
.|.++|||||+++++|||+|+.+|||.+++.|++. +++.++|+.+++||.|||||+|+|..|.++++++..+. ..+..
T Consensus 338 ~g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~-~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~ 416 (766)
T COG1204 338 KGKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPK-GGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAE 416 (766)
T ss_pred cCCceEEEechHHhhhcCCcceEEEEeeeEEEcCC-CCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHH
Confidence 99999999999999999999999999999999984 44899999999999999999999999999999955443 44333
Q ss_pred hhcC--CCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHH
Q 043190 1078 FLYE--PFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFE 1155 (1492)
Q Consensus 1078 ~l~~--~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~ 1155 (1492)
.... +.|++|.+. +..+.+...+.+.+..++.+|+..++||.|+..||.+|+.. .....+..++.
T Consensus 417 ~~~~~~~e~~~s~l~----~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~---------~~~~~i~~~~~ 483 (766)
T COG1204 417 LYIQSEPEPIESKLG----DELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEG---------MLREEILASLR 483 (766)
T ss_pred HhhccCcchHHHhhc----ccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhcccc---------chHHHHHHHHH
Confidence 3333 344444433 33367778888899999999999999999999999998762 23466788999
Q ss_pred HhHHCC-CceecCCccccccchhhhhhccccHHHHHHHHhccCCCC---CHHHHHHHHhCCCCCCCCcCCCChhHHH--H
Q 043190 1156 DLEDSG-CVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDT---SLEVFLHILSGASEYDELPVRHNEDNHN--E 1229 (1492)
Q Consensus 1156 ~L~~~~-~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~---~~~~ll~ils~a~Ef~~i~~R~~e~~~l--~ 1229 (1492)
.|.+.+ .+......+.+|++|+.+|++||++.|++.|...+.... +..++++.++.++||..+++|.++...+ .
T Consensus 484 ~L~~~~~~~~~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~~~~~~~~~~ 563 (766)
T COG1204 484 YLEENGLILDADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELVLD 563 (766)
T ss_pred HHHhccceeeccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhhhhhhhhhHH
Confidence 999997 666666669999999999999999999999987765544 7889999999999999999999887664 3
Q ss_pred Hhhcccceeec----CCCCC----ChhHHHHHHHHHHhcCCCCC-C-cc---hHhhHHHHHHhHHHH-------HHHHHH
Q 043190 1230 ALSQRVRFAVD----NNRLD----DPHVKANLLFQAHFSRLDLP-I-SD---YVTDLKSVLDQSIRI-------IQAMID 1289 (1492)
Q Consensus 1230 ~l~~~~~~~~~----~~~~~----~~~~K~~lLlqa~l~r~~l~-~-~~---l~~D~~~il~~~~rl-------~~a~~~ 1289 (1492)
.+....++... ..... ....|....+.+|+.+.+.. + .. ...|+..+...+.|+ ..++-.
T Consensus 564 ~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w~~~~~~~l~~~~~r 643 (766)
T COG1204 564 ELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEWLSADLLALGKAAER 643 (766)
T ss_pred HHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhhhhhhhhhhhhhhhh
Confidence 33333322111 10111 22456777788888887654 1 22 368899999999999 777777
Q ss_pred HHHhcCCHHHH-HHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcC
Q 043190 1290 ICANSGWLSSS-ITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDI 1350 (1492)
Q Consensus 1290 i~~~~~~~~~~-~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~ 1350 (1492)
.+...+...-. ...=.+...+..|+-++...+|..+++++..+++++.++|..+++++...
T Consensus 644 ~~~~~~~~~~~~~~~~~~~~rie~gv~~e~~~~l~~i~~~grvrar~ly~~g~~~~~~~~~~ 705 (766)
T COG1204 644 LAKILGLGLHVLRKLEILSLRIEYGVRSEELLELVEIRGVGRVRARKLYNAGYKSLEDLRLI 705 (766)
T ss_pred hHhhhCCCccccccchhhhhhhhcCCChhhhcccccccccchhHHHHHHHhhhccHHHHHhh
Confidence 77766544322 22333778888898844378899999999999999999999999999843
No 9
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=6.9e-65 Score=654.13 Aligned_cols=505 Identities=22% Similarity=0.310 Sum_probs=414.8
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHh----hHHHHHHHHHHHhc
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELL----SEICYKKVVDSLRQ 80 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 80 (1492)
.+++|+|+||||+||++++++|+++. .|.+++||+|+...+..............+ ....+..+.+.+..
T Consensus 169 ~~~~qii~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (737)
T PRK02362 169 NPDLQVVALSATIGNADELADWLDAE------LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLEE 242 (737)
T ss_pred CCCCcEEEEcccCCCHHHHHHHhCCC------cccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHHc
Confidence 45789999999999999999999876 478899999998755422111000000001 12234455556678
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhh----cCchHHHHHhcccEEEEcCCCChhh
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMK----SRNKDLIELFGLAVGVHHAGMLRSD 156 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~gv~~hhagl~~~~ 156 (1492)
++|+||||+||++|+.+|+.|.+..... +...+......+.+.+.. ..+..|.+++.+|||+|||||++++
T Consensus 243 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~e 317 (737)
T PRK02362 243 GGQCLVFVSSRRNAEGFAKRAASALKKT-----LTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREH 317 (737)
T ss_pred CCCeEEEEeCHHHHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHH
Confidence 8999999999999999999998764321 111111222222233321 2357899999999999999999999
Q ss_pred HHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC--CcccCchhhhhhccCCCCCCccceEEEEeCCc
Q 043190 157 RGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG--GWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 157 R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~--~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
|..||++|++|.++|||||+|||||||+|+++|||+++++||+..+ +++..+|+||+|||||+|+|..|.||+++...
T Consensus 318 R~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~ 397 (737)
T PRK02362 318 RELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSY 397 (737)
T ss_pred HHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCc
Confidence 9999999999999999999999999999999999999999997642 35667799999999999999999999999775
Q ss_pred c-H-HHHHHHh-cCCCccccchh--HhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchH
Q 043190 235 K-L-AYYLRLL-TSQLPIESQFI--SSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSL 309 (1492)
Q Consensus 235 ~-~-~~~~~~~-~~~~~ies~l~--~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~ 309 (1492)
+ . +.|.+++ ..+.|++|++. ..+.+|+|++|+.|++.+.+|+.+|+++||+|++.. .
T Consensus 398 ~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~------------------~ 459 (737)
T PRK02362 398 DELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTD------------------D 459 (737)
T ss_pred hhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhcc------------------c
Confidence 3 3 3456666 57889999995 489999999999999999999999999999998631 1
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCC--CHHHHHHHhcCCccCCCC
Q 043190 310 SLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHM--NDSEVIEMVSHSSEFENI 387 (1492)
Q Consensus 310 ~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~--~~~~ll~ils~s~Ef~~i 387 (1492)
..++.+++++++++|.+.|||+.+ ++.+.||++|+++|+||++|.|+..|.+.++... +..++|+++|.++||..+
T Consensus 460 ~~~l~~~v~~~l~~L~~~~~i~~~--~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~~~l~~i~~~~e~~~~ 537 (737)
T PRK02362 460 TGRLERVVDDVLDFLERNGMIEED--GETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKKPTDLGLLHLVCSTPDMYEL 537 (737)
T ss_pred hHHHHHHHHHHHHHHHHCCCeeec--CCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhcccCchHHHHHHhhcCcccccc
Confidence 235678999999999999999965 4679999999999999999999999999998764 788999999999999999
Q ss_pred ccchhHHHHHHHHHhc-------CCcccccCCC---CChhHHHHHHHHHHHcCCCCC----Cchh-HhhHHHHHHhHHHH
Q 043190 388 VVRDEEQNELETLVQT-------LCPVEVKGGP---SNKHGKISILIQLYISRGWID----TFSL-VSDAAYISASLARI 452 (1492)
Q Consensus 388 ~~R~~e~~~l~~l~~~-------~~~~~~~~~~---~~~~~K~~~Llqa~i~~~~~~----~~~l-~~d~~~i~~~~~rl 452 (1492)
++|.+|.+.++.+... .+|++..... ..++.|+++|||+|++|.+++ .|++ .+|++.+++++.||
T Consensus 538 ~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~~~~~~i~~~~~~~~gdl~~~~~~~~~l 617 (737)
T PRK02362 538 YLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDEVDEERITERYGVGPGDIRGKVETAEWL 617 (737)
T ss_pred ccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 9999999999887522 1343332211 126789999999999999865 4667 59999999999999
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhcCCc
Q 043190 453 MRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIRYTP 531 (1492)
Q Consensus 453 ~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~~~~ 531 (1492)
++|+.++|...+ ...+..+++|++|+.||+|++..||.|+| ++|+..+++|++.|+ |+.+|..++++++..++| ++
T Consensus 618 ~~a~~~i~~~~~-~~~~~~~~~l~~~l~~gv~~~~~~L~~ip-~i~~~~a~~l~~~gi~s~~dl~~~~~~~l~~~~g-~~ 694 (737)
T PRK02362 618 LHAAERLASELD-LDLARAARELEKRVEYGVREELLDLVGLR-GVGRVRARRLYNAGIESRADLRAADKSVVLAILG-EK 694 (737)
T ss_pred HHHHHHHHHHhC-ccHHHHHHHHHHHHHhCCCHHHHHHhCCC-CCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHHC-HH
Confidence 999999987754 56789999999999999999999999999 999999999999999 999999999999999998 78
Q ss_pred hHHHHHHHhccC
Q 043190 532 GGRLVKQYLGYF 543 (1492)
Q Consensus 532 ~~~~i~~~~~~~ 543 (1492)
.+++|++.+...
T Consensus 695 ~~~~i~~~~~~~ 706 (737)
T PRK02362 695 IAENILEQAGRR 706 (737)
T ss_pred HHHHHHHHhCcc
Confidence 899999998743
No 10
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.3e-61 Score=619.92 Aligned_cols=503 Identities=21% Similarity=0.274 Sum_probs=397.1
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEE--ee--CCchhHH-HHHhhHHHHHHHHHHH
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIG--IS--EPNFAAR-NELLSEICYKKVVDSL 78 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~--~~--~~~~~~~-~~~~~~~~~~~~~~~~ 78 (1492)
..+++|+|+||||++|++++++|+++. .+..++||+|+...+.. .. ......+ ...+ ...+.+.+
T Consensus 166 l~~~~qiI~lSATl~n~~~la~wl~~~------~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i 235 (720)
T PRK00254 166 MLGRAQILGLSATVGNAEELAEWLNAE------LVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSW----ESLVYDAV 235 (720)
T ss_pred cCcCCcEEEEEccCCCHHHHHHHhCCc------cccCCCCCCcceeeEecCCeeeccCcchhcchHHH----HHHHHHHH
Confidence 346789999999999999999999876 36788999999653321 11 1111000 1112 22344455
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHh-hcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVM-KSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
+.++|+||||+||+.|+.+|..+.+..... +..........+.+... ...+..|++++.+||++|||||++++|
T Consensus 236 ~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR 310 (720)
T PRK00254 236 KKGKGALVFVNTRRSAEKEALELAKKIKRF-----LTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTER 310 (720)
T ss_pred HhCCCEEEEEcChHHHHHHHHHHHHHHHHh-----cCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHH
Confidence 678999999999999999999997654321 11111111222222222 234678999999999999999999999
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC-CcccCchhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG-GWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~-~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
..||++|++|.++|||||+||+||||+|+++|||.+++.|+.... .+...+|+||+|||||+|+|..|.+++++..++.
T Consensus 311 ~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~ 390 (720)
T PRK00254 311 VLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEP 390 (720)
T ss_pred HHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcch
Confidence 999999999999999999999999999999999999999863211 1233468999999999999999999999987653
Q ss_pred -HHHHHHh-cCCCccccchh--HhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHH
Q 043190 237 -AYYLRLL-TSQLPIESQFI--SSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLK 312 (1492)
Q Consensus 237 -~~~~~~~-~~~~~ies~l~--~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~ 312 (1492)
+.|.+++ +.++++.|.+. +.|.+|++++|+.|++.+.+|+++|+++||+|.+ ||.+|+
T Consensus 391 ~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~---~~~~~~--------------- 452 (720)
T PRK00254 391 SKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQ---RKDLYS--------------- 452 (720)
T ss_pred HHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHh---hcChHh---------------
Confidence 3344443 33445556553 3678999999999999999999999999999964 565452
Q ss_pred HHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhc---CCCHHHHHHHhcCCccCCCCcc
Q 043190 313 QRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRR---HMNDSEVIEMVSHSSEFENIVV 389 (1492)
Q Consensus 313 ~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~---~~~~~~ll~ils~s~Ef~~i~~ 389 (1492)
+.+.+++++++|.++|||+.+. ++.+.+|++|+++|+|||+|+|+..|.+.++. ..+...+|+++|.++||..+++
T Consensus 453 ~~~~v~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~~~l~~~~~~~e~~~~~~ 531 (720)
T PRK00254 453 LEEKAKEIVYFLLENEFIDIDL-EDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPLGIFQLIASTPDMTPLNY 531 (720)
T ss_pred HHHHHHHHHHHHHHCCCeEEcC-CCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHHHHHHHhhCCccccccCc
Confidence 2467889999999999999864 36799999999999999999999999999876 6688999999999999999999
Q ss_pred chhHHHHHHHHHhc-----CCcccccCC--C--CChhHHHHHHHHHHHcCCCCCC----chh-HhhHHHHHHhHHHHHHH
Q 043190 390 RDEEQNELETLVQT-----LCPVEVKGG--P--SNKHGKISILIQLYISRGWIDT----FSL-VSDAAYISASLARIMRA 455 (1492)
Q Consensus 390 R~~e~~~l~~l~~~-----~~~~~~~~~--~--~~~~~K~~~Llqa~i~~~~~~~----~~l-~~d~~~i~~~~~rl~~a 455 (1492)
|++|...+..+... ..+.|.+.. . ..++.|+++|||+|++|.+++. |+. .+|++.+++++.||++|
T Consensus 532 r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~~l~~a 611 (720)
T PRK00254 532 SRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEVPEGEIVETYNIDPGDLYRILELADWLMYS 611 (720)
T ss_pred chhhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 99998888754433 011222211 1 1367999999999999998763 333 49999999999999999
Q ss_pred HHHHHHhcCcH-HHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCch
Q 043190 456 LFETCLRRGWC-EMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPG 532 (1492)
Q Consensus 456 l~ei~~~~~~~-~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~ 532 (1492)
+++++...||. .....+.+|++||.||+|++.+||.|+| ++|+..+++|.++|+ |+.++.++++++|..+.| +++.
T Consensus 612 ~~~i~~~~~~~~~~~~~l~~l~~rl~~g~~~~~~~L~~ip-gig~~~~~~l~~~g~~s~~~i~~a~~~el~~~~gi~~~~ 690 (720)
T PRK00254 612 LIELYKLFEPKQEVLDYLETLHLRVKHGVREELLELMRLP-MIGRKRARALYNAGFRSIEDIVNAKPSELLKVEGIGAKI 690 (720)
T ss_pred HHHHHHHhCcchhHHHHHHHHHHHHHcCCCHHHhhhhcCC-CCCHHHHHHHHHccCCCHHHHHhCCHHHHhcCCCCCHHH
Confidence 99999977763 2233455899999999999999999999 999999999999999 999999999999999966 5889
Q ss_pred HHHHHHHhc
Q 043190 533 GRLVKQYLG 541 (1492)
Q Consensus 533 ~~~i~~~~~ 541 (1492)
++.|+++++
T Consensus 691 a~~i~~~~~ 699 (720)
T PRK00254 691 VEGIFKHLG 699 (720)
T ss_pred HHHHHHHhc
Confidence 999999987
No 11
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.9e-59 Score=600.69 Aligned_cols=488 Identities=21% Similarity=0.273 Sum_probs=401.0
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCc--hhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPN--FAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.+++|+|+||||++|++++++|+++. .+...+||+|+...+....... ...+. .......+.+...+++
T Consensus 167 ~~~~riI~lSATl~n~~~la~wl~~~------~~~~~~r~vpl~~~i~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~ 237 (674)
T PRK01172 167 NPDARILALSATVSNANELAQWLNAS------LIKSNFRPVPLKLGILYRKRLILDGYERS---QVDINSLIKETVNDGG 237 (674)
T ss_pred CcCCcEEEEeCccCCHHHHHHHhCCC------ccCCCCCCCCeEEEEEecCeeeecccccc---cccHHHHHHHHHhCCC
Confidence 45799999999999999999999876 3778899999986543221100 00000 0012233444456789
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||+||++|+.+|+.|.+........... .......++.|++++.+||++|||||++++|..+|+
T Consensus 238 ~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~------------~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~ 305 (674)
T PRK01172 238 QVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVS------------SENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEE 305 (674)
T ss_pred cEEEEeccHHHHHHHHHHHHHhhhhccccccc------------ccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHH
Confidence 99999999999999999998765432211100 001123356789999999999999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC-CcccCchhhhhhccCCCCCCccceEEEEeCCcc-HHHHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG-GWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK-LAYYL 240 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~-~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~-~~~~~ 240 (1492)
.|++|.++|||||+|++||||+|+++|||.++..|+.... .++..++.||+|||||+|+|..|.+++++...+ .+.+.
T Consensus 306 ~f~~g~i~VLvaT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~ 385 (674)
T PRK01172 306 MFRNRYIKVIVATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAK 385 (674)
T ss_pred HHHcCCCeEEEecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHH
Confidence 9999999999999999999999999999999988875432 356667999999999999999999999987654 56777
Q ss_pred HHh-cCCCccccchhHh--HHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHH
Q 043190 241 RLL-TSQLPIESQFISS--LKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALV 317 (1492)
Q Consensus 241 ~~~-~~~~~ies~l~~~--l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~ 317 (1492)
+++ +.+.|++|++... +..+++++|+.|.+.+.+|+.+|+++||+|++. + .+++.+.+
T Consensus 386 ~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~---~----------------~~~l~~~v 446 (674)
T PRK01172 386 KYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQN---G----------------VDEIDYYI 446 (674)
T ss_pred HHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcC---c----------------hHHHHHHH
Confidence 777 7889999999864 455566999999999999999999999999842 1 12457899
Q ss_pred HHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHH
Q 043190 318 TDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNEL 397 (1492)
Q Consensus 318 ~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l 397 (1492)
+++++.|.++|+|+.+ +.+.+|++|+++|+||++|+|+..|.+.++...+...+|+++|.++|| +++|..|...+
T Consensus 447 ~~~l~~L~~~~~i~~~---~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~~~~~l~~~~~~~e~--~~~~~~~~~~~ 521 (674)
T PRK01172 447 ESSLKFLKENGFIKGD---VTLRATRLGKLTSDLYIDPESALILKSAFDHDYDEDLALYYISLCREI--IPANTRDDYYA 521 (674)
T ss_pred HHHHHHHHHCCCcccC---CcEeECHHHHHHHHhCCCHHHHHHHHHHhhccCCHHHHHHHhhcCccc--cccccchHHHH
Confidence 9999999999999743 568999999999999999999999999999988999999999999999 77777777777
Q ss_pred HHHHhcCCcccccCCCCChhHHHHHHHHHHHcCCCCC----CchhH-hhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHH
Q 043190 398 ETLVQTLCPVEVKGGPSNKHGKISILIQLYISRGWID----TFSLV-SDAAYISASLARIMRALFETCLRRGWCEMSLFM 472 (1492)
Q Consensus 398 ~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~i~~~~~~----~~~l~-~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~ 472 (1492)
..+... .+. .....++.|+++|||+|++|.+++ .|... +|.+.+++.+.|+..|+..+|... +...+..+
T Consensus 522 ~~~~~~-~~~---~~~~~~~~k~~~ll~~~~~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~l 596 (674)
T PRK01172 522 MEFLED-IGV---IDGDISAAKTAMVLRGWISEASMQKITDTYGIAPGDVQARASSADWISYSLARLSSIY-KPEMRRKL 596 (674)
T ss_pred HHHHHH-hcc---ccchhHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHH
Confidence 777665 332 123457899999999999999876 34444 999999999999999999999764 46667778
Q ss_pred HHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccC
Q 043190 473 LEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYF 543 (1492)
Q Consensus 473 ~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~ 543 (1492)
-.|.++|.||+|++..||.|+| ++++.++++|.++|+ |+.++.+++++++.++++ ++++++.|.+.++++
T Consensus 597 ~~~~~rl~~gv~~~~~~L~~ip-~~~~~~a~~l~~~g~~~~~di~~~~~~~~~~i~~~~~~~~~~i~~~~~~~ 668 (674)
T PRK01172 597 EILNIRIKEGIREDLIDLVLIP-KVGRVRARRLYDAGFKTVDDIARSSPERIKKIYGFSDTLANAIVNRAMKI 668 (674)
T ss_pred HHHHHHHHcCCCHHHHhhcCCC-CCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 8899999999999999999999 999999999999999 999999999999999988 788899998887654
No 12
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=5.9e-57 Score=561.37 Aligned_cols=549 Identities=29% Similarity=0.367 Sum_probs=402.6
Q ss_pred cccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEE
Q 043190 7 MIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMV 86 (1492)
Q Consensus 7 ~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV 86 (1492)
.+||||||||+||++++|+||++++....+.+.+.+|++|....+.+...... ......+..++.++.+.++.++|+||
T Consensus 180 ~~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k-~~~~~~~~~~~~~v~~~~~~~~qvLv 258 (766)
T COG1204 180 LIRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKK-TWPLLIDNLALELVLESLAEGGQVLV 258 (766)
T ss_pred ceEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccc-cccccchHHHHHHHHHHHhcCCeEEE
Confidence 48999999999999999999999965556666667777777777766653322 22223355677888889999999999
Q ss_pred EEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhC
Q 043190 87 FVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSE 166 (1492)
Q Consensus 87 F~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~ 166 (1492)
|||||+.|+.+|+++++........................+.....++.|.+++..|+|+|||||++++|..+|+.|+.
T Consensus 259 Fv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~ 338 (766)
T COG1204 259 FVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK 338 (766)
T ss_pred EEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc
Confidence 99999999999999997554322211111000000000001222334589999999999999999999999999999999
Q ss_pred CCccEEEeccccccccCCCcEEEEEeccceecCCCCCccc---CchhhhhhccCCCCCCccceEEEEe-CCccHHHHHHH
Q 043190 167 GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRD---LGMLDIFGRAGRPQFDRSGEGIIIT-SHDKLAYYLRL 242 (1492)
Q Consensus 167 g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~---~~~~~~~GRAGR~~~d~~G~~i~~~-~~~~~~~~~~~ 242 (1492)
|+++|||||+|||||||+||++|||++++.|++. +++.. ++++||+|||||||+|..|.+++++ +.++.+++...
T Consensus 339 g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~-~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~ 417 (766)
T COG1204 339 GKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPK-GGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAEL 417 (766)
T ss_pred CCceEEEechHHhhhcCCcceEEEEeeeEEEcCC-CCeEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHH
Confidence 9999999999999999999999999999999984 33544 5688999999999999999999999 45555555555
Q ss_pred hcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHHHHHHH
Q 043190 243 LTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALVTDAAR 322 (1492)
Q Consensus 243 ~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (1492)
...+.|.+ ....|-+..+++..++++.+..++.+|+..||+|.|+..+|..|+... .+..+..+++
T Consensus 418 ~~~~~~e~--~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t~~~~~~~~~~~------------~~~~i~~~~~ 483 (766)
T COG1204 418 YIQSEPEP--IESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERTFYNPQTYGEGM------------LREEILASLR 483 (766)
T ss_pred hhccCcch--HHHhhcccccchheEEEEEeccchhhHHHHHHHHHHHHhhhhhccccc------------hHHHHHHHHH
Confidence 55554433 344445455889999999999999999999999999999999886522 2567889999
Q ss_pred HHHHhc-cccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCC---CHHHHHHHhcCCccCCCCccchhHHHHH-
Q 043190 323 ALDKAK-MMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHM---NDSEVIEMVSHSSEFENIVVRDEEQNEL- 397 (1492)
Q Consensus 323 ~L~~~~-~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~---~~~~ll~ils~s~Ef~~i~~R~~e~~~l- 397 (1492)
.|.+.+ +++ .....+.+|++|+.+|+|||+++|+..|.+.+.... +..++++.++.++||..++.|..+..++
T Consensus 484 ~L~~~~~~~~--~~~~~~~ate~g~~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~~~~~~~~ 561 (766)
T COG1204 484 YLEENGLILD--ADWEALHATELGKLVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELV 561 (766)
T ss_pred HHHhccceee--ccccccchhHHHHHhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhhhhhhhhh
Confidence 999997 333 345789999999999999999999999999987755 8899999999999999999998888776
Q ss_pred HHHHhcCCcccccCCCC---------ChhHHHHHHHHHHHcCCCCC----CchhH-hhHHHHHHhHHHH-------HHHH
Q 043190 398 ETLVQTLCPVEVKGGPS---------NKHGKISILIQLYISRGWID----TFSLV-SDAAYISASLARI-------MRAL 456 (1492)
Q Consensus 398 ~~l~~~~~~~~~~~~~~---------~~~~K~~~Llqa~i~~~~~~----~~~l~-~d~~~i~~~~~rl-------~~al 456 (1492)
........++...+... ....|....+-+|+++.+.. .|... +|+..+...+.|+ ..++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~l~~wi~~~~~~~i~~~~~~~~~dl~~~~~~a~w~~~~~~~l~~~~ 641 (766)
T COG1204 562 LDELEEQSDYLLGERLDELAVEYNLLLQALKTAARLLDWINEADEDEILNAYGVAPGDLLRIAETAEWLSADLLALGKAA 641 (766)
T ss_pred HHHHHhcchHHhhccccccchhhHHHHHHHHHHHHHHHHHHhCcHHHHHHHhCcchhhHHhhcchhhhhhhhhhhhhhhh
Confidence 44444324443332222 33555666666777765543 33333 6777777777777 6666
Q ss_pred HHHHHhcCcHHHH-HHHHHHHHHHhcCCC-CCCcccccccccCCHHHHHHHHHcCC-ChhHHh-hCCHHHHHHHhcCCch
Q 043190 457 FETCLRRGWCEMS-LFMLEYCKAVDRQIW-PHQHPLRQFDKELPAEILRKLEERGA-DLDRLQ-EMEEKDIGALIRYTPG 532 (1492)
Q Consensus 457 ~ei~~~~~~~~~~-~~~~~l~~~i~~~~w-~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~-~~~~~~~~~l~~~~~~ 532 (1492)
-.++...+....- ...-.+..+++.++- ++..+|..++ ++++..++++++.|+ +++++. ...+.++..+.+ .
T Consensus 642 ~r~~~~~~~~~~~~~~~~~~~~rie~gv~~e~~~~l~~i~-~~grvrar~ly~~g~~~~~~~~~~~~~~~~~~~~~---~ 717 (766)
T COG1204 642 ERLAKILGLGLHVLRKLEILSLRIEYGVRSEELLELVEIR-GVGRVRARKLYNAGYKSLEDLRLIADPAELLPLTG---I 717 (766)
T ss_pred hhhHhhhCCCccccccchhhhhhhhcCCChhhhccccccc-ccchhHHHHHHHhhhccHHHHHhhcChhhhhhhhh---h
Confidence 6666555443211 334456666777776 5566777777 788888888888887 777777 444555443332 2
Q ss_pred HHHHHHHhccCCceeEEEEEeecccceEEEEEEEecCCcccCCcCCcccEEEEEEEcCCCCeeEEEeeeee
Q 043190 533 GRLVKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYHSELFTL 603 (1492)
Q Consensus 533 ~~~i~~~~~~~P~~~i~~~~~~~~~~~~~i~~~~~~~f~~~~~~h~~~e~~~i~v~d~~~~~i~~~~~~~l 603 (1492)
+..+.. .+.+.+.|.-..|+..+.||..+.+.+...+.|.+.+.+
T Consensus 718 ~~~~~~--------------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 762 (766)
T COG1204 718 GERLVE--------------------------AILESLGRDVLLSGRAYFFSIEVRELDLLYVLHEEALIL 762 (766)
T ss_pred HHHHHH--------------------------HHHHHhhhhhhcccchhhhcccCccccccceecchhhcc
Confidence 222222 123455677788888999999999999999988765543
No 13
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.3e-50 Score=450.87 Aligned_cols=544 Identities=26% Similarity=0.340 Sum_probs=392.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|++.+.|+|.-++.+-+-.|+|.+|.++|+||||++++++=+..+.. .+++.+|++|..|||+|.+++|++++++. |.
T Consensus 213 G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-~g~KmlfLvPLVALANQKy~dF~~rYs~L-gl 290 (830)
T COG1202 213 GIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-GGKKMLFLVPLVALANQKYEDFKERYSKL-GL 290 (830)
T ss_pred CcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-CCCeEEEEehhHHhhcchHHHHHHHhhcc-cc
Confidence 89999999999999866689999999999999999999987776654 38999999999999999999999999776 88
Q ss_pred EEEEEcCCCCcc-------hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHH
Q 043190 765 EMVEMTGDYTPD-------LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMR 836 (1492)
Q Consensus 765 ~v~~~~g~~~~~-------~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~ 836 (1492)
++..-.|..... ......+||||+|+|-++.++|.. ..+.+++.|||||+|++.+ +||+.++-++.|++
T Consensus 291 kvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg---~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr 367 (830)
T COG1202 291 KVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG---KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLR 367 (830)
T ss_pred eEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC---CcccccceEEeeeeeeccchhcccchhhHHHHHH
Confidence 887776643322 122347899999999999999974 4589999999999999976 89999999999999
Q ss_pred HhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCc-cccccccccChhHHHHHhhcC
Q 043190 837 YISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGK-FYCPRMNSMNKPAYAAICTHS 915 (1492)
Q Consensus 837 ~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~ 915 (1492)
++.. ..|+|++|||+.|+++++..|+.... ..+.||+|++.++.-.... ........+.+..+.......
T Consensus 368 ~l~~----~AQ~i~LSATVgNp~elA~~l~a~lV-----~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg 438 (830)
T COG1202 368 YLFP----GAQFIYLSATVGNPEELAKKLGAKLV-----LYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKG 438 (830)
T ss_pred HhCC----CCeEEEEEeecCChHHHHHHhCCeeE-----eecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccC
Confidence 8753 79999999999999999999998763 4478999998876522111 111111111111222222334
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
-.+++|||++||+.|..+|..|.. -+..+.+||+||+..+|..++.
T Consensus 439 ~rGQtIVFT~SRrr~h~lA~~L~~----------------------------------kG~~a~pYHaGL~y~eRk~vE~ 484 (830)
T COG1202 439 YRGQTIVFTYSRRRCHELADALTG----------------------------------KGLKAAPYHAGLPYKERKSVER 484 (830)
T ss_pred cCCceEEEecchhhHHHHHHHhhc----------------------------------CCcccccccCCCcHHHHHHHHH
Confidence 568999999999999999988833 2567899999999999999999
Q ss_pred HHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH---
Q 043190 996 LFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK--- 1072 (1492)
Q Consensus 996 ~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~--- 1072 (1492)
.|.++++.++|+|.+++.|||+|+-.||+.+- --...++++.+|.||.|||||++++..|.+|+++.+...
T Consensus 485 ~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsL------aMG~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~ 558 (830)
T COG1202 485 AFAAQELAAVVTTAALAAGVDFPASQVIFESL------AMGIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHA 558 (830)
T ss_pred HHhcCCcceEeehhhhhcCCCCchHHHHHHHH------HcccccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcc
Confidence 99999999999999999999999998886311 011246789999999999999999999999999876542
Q ss_pred -------HHHHHhh-cCCCceeeccccc-chhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHH
Q 043190 1073 -------SFYKKFL-YEPFPVESSLRDQ-LHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLS 1143 (1492)
Q Consensus 1073 -------~~~~~~l-~~~~pies~l~~~-l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~ 1143 (1492)
+.--+++ .++.|+.-.-.+. -.+.+++ ..|...+.++.- -+ |+...|....
T Consensus 559 ~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~-~v-----------~~~~~g~~~~------ 618 (830)
T COG1202 559 SMEETEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIE-RV-----------NSLMLGAAFD------ 618 (830)
T ss_pred cccccHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHh-hc-----------ChhhccccCC------
Confidence 2223344 4455655443332 2233333 333334433221 11 2222222110
Q ss_pred HHHHHHHHHHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCC
Q 043190 1144 SYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHN 1223 (1492)
Q Consensus 1144 ~~l~~~i~~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~ 1223 (1492)
.+.++..|++.|+|..+++.+.+|+.|+++|.+.+.|.++..+...+.... +-+.+++.-..|+...+...
T Consensus 619 ------~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v~~~~---~pl~i~~~l~pfE~ayls~~ 689 (830)
T COG1202 619 ------PKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIREGVLASM---DPLRIAAELEPFENAYLSGF 689 (830)
T ss_pred ------HHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHHHHHhhhccC---ChHhHhhccccccccccChH
Confidence 247899999999999888889999999999999999999999987753333 34556666667776665543
Q ss_pred hhHHHHH-hhcccceeec----------CCCCC--Chh--HHHHHHHHHHhcC------------------------CC-
Q 043190 1224 EDNHNEA-LSQRVRFAVD----------NNRLD--DPH--VKANLLFQAHFSR------------------------LD- 1263 (1492)
Q Consensus 1224 e~~~l~~-l~~~~~~~~~----------~~~~~--~~~--~K~~lLlqa~l~r------------------------~~- 1263 (1492)
-...+.. +...+|..+. ...+. +|. .|.+++.++.++. .+
T Consensus 690 l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~df~~c~c~d~ce~~~~~lse~ii~lR~~gk~p 769 (830)
T COG1202 690 LKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYMDFLNCTCRDCCECAEQRLSEKIIELRIEGKDP 769 (830)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHhcCCCH
Confidence 2222211 1122221110 00111 233 3444555555442 11
Q ss_pred ----------CCCcchHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 043190 1264 ----------LPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVM 1311 (1492)
Q Consensus 1264 ----------l~~~~l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~ 1311 (1492)
..+..|++|....++++.|++.|.-.||..++--.....+..+.+-+.
T Consensus 770 ~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ea~~lk~~ie 827 (830)
T COG1202 770 SQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEAEAKALKKKIE 827 (830)
T ss_pred HHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh
Confidence 123457899999999999999999999987766555556666665554
No 14
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=3.7e-48 Score=453.01 Aligned_cols=305 Identities=35% Similarity=0.627 Sum_probs=232.2
Q ss_pred cccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhcccceeecCCCCCChhHHH
Q 043190 1172 PTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKA 1251 (1492)
Q Consensus 1172 ~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~ 1251 (1492)
||++|++||+|||+++|+..|...+++..+..++|++||.|.||.++++|++|+..+++|.+.+|++.+...+++++.|+
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~ 80 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKKIPYPIKKEKINDPHIKA 80 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCCSSS--STS-TTSHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHhcccCccccccccHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999888666788999999
Q ss_pred HHHHHHHhcCCCCCCcchHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHH
Q 043190 1252 NLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNND 1331 (1492)
Q Consensus 1252 ~lLlqa~l~r~~l~~~~l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~ 1331 (1492)
++||||||+|+++|+++|..|+.+|+++++||++||+|+|..+||++++.++|+|+|||+||+|++ .+||+||||++++
T Consensus 81 ~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~-~~~L~Qlp~i~~~ 159 (314)
T PF02889_consen 81 FVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDS-DSPLLQLPHIGEE 159 (314)
T ss_dssp HHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TT-S-GGGGSTT--HH
T ss_pred HHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCC-CChhhcCCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999965 8999999999999
Q ss_pred HHHHHHhCCCCCHHHHhcCCHHHHhhhhC--CchHHHHHHHhcCCCceEEEEEEEeccCCCCCeEEEEEEEEeccCCCCC
Q 043190 1332 LLGTLRARGISTVQQLLDIPKENLQTVIG--NFPVSRLHQDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMDKMNSWKNT 1409 (1492)
Q Consensus 1332 ~~~~l~~~~i~s~~~l~~~~~~~~~~~l~--~~~~~~i~~~~~~~P~i~i~~~~~~~~~~~~~~~~l~v~l~~~~~~~~~ 1409 (1492)
.+++|.++|+.++++|.++++++++.+++ +..++++.++++++|.++|++++.+.+......++++|++++.+
T Consensus 160 ~~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~~~~v~v~i~~~~----- 234 (314)
T PF02889_consen 160 SLKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIVPILTVQVSITRKF----- 234 (314)
T ss_dssp HHHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEECSEEEEEEEEEESS-----
T ss_pred HHHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccCCcEEEEEEEEccc-----
Confidence 99999999999999999999999999985 45689999999999999999888775442114488999999876
Q ss_pred CccccccCCCCccceEEEEEEeCCCCeEEEEEEeec-CC--c--ceEEEEecCCCCCc--ceEEEEEEeCCCCCccEEEE
Q 043190 1410 SRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISF-SD--R--LNTHMELPSGITTF--QGMKLVVVSDCYLGFEQEHS 1482 (1492)
Q Consensus 1410 ~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~r~~~-~~--~--~~~~~~~p~~~~~~--~~~~v~~~sd~y~G~D~~~~ 1482 (1492)
.+.++||+.|.|+||++|||+++|+++.++|+++ ++ . ...+|.+|.. +|. ++|+++++||+|+|+|++++
T Consensus 235 --~~~~~~~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~vp~~-~~~~~~~~~v~v~sd~y~G~d~~~~ 311 (314)
T PF02889_consen 235 --SWSDRFPKKKKESWWLFVGDSKNNELLHFERITISKKKSKDTVKISFQVPIP-VGPRPYQYTVYVISDSYLGLDQEVP 311 (314)
T ss_dssp --S-SST-SS--B--EEEEEEECCCTEEEEEEEE---SS--EEEEEEEEE--SS--EE--EEEEEEEEESS-SS--EEEE
T ss_pred --ccccCCCCCCcccEEEEEEECCCCeEEEEeeeehhhhccCCcEEEEEEecCC-CCCCCceEEEEEEECCccccceEEE
Confidence 3445999999999999999999999999999999 43 2 2367778874 244 99999999999999999999
Q ss_pred EEE
Q 043190 1483 IEA 1485 (1492)
Q Consensus 1483 i~~ 1485 (1492)
|++
T Consensus 312 i~~ 314 (314)
T PF02889_consen 312 INF 314 (314)
T ss_dssp EEE
T ss_pred eeC
Confidence 975
No 15
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=2.2e-47 Score=445.21 Aligned_cols=302 Identities=35% Similarity=0.596 Sum_probs=274.8
Q ss_pred cccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhcccceeecCCCCCChhH
Q 043190 1170 VEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHV 1249 (1492)
Q Consensus 1170 ~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~ 1249 (1492)
+.+|++|++||+|||++.|++.|...+.+.++..++|+++|.|.||.++++|++|+..+++|.+.++++......++++.
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~~~~~~~~~~~~~~~~ 81 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEKLPIRLENPSLDDPHV 81 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHhCCcCcCCCCCCCchH
Confidence 57899999999999999999999999999999999999999999999999999999999999998887765556778999
Q ss_pred HHHHHHHHHhcCCCCCCcchHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCC
Q 043190 1250 KANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMN 1329 (1492)
Q Consensus 1250 K~~lLlqa~l~r~~l~~~~l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~ 1329 (1492)
|+++||||||+|++++.++|.+|+.+|+++++||++||+|++..+||++++.++++|+|||+||+|++ .+||+||||++
T Consensus 82 K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~-~~~L~Qlp~i~ 160 (312)
T smart00611 82 KANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPT-DSPLLQLPHLP 160 (312)
T ss_pred HHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCC-CCccccCCCCC
Confidence 99999999999999988899999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCC--chHHHHHHHhcCCCceEEEEEEEeccC-CCCCeEEEEEEEEeccCC
Q 043190 1330 NDLLGTLRARGISTVQQLLDIPKENLQTVIGN--FPVSRLHQDLQRFPRIQVKLRLQRRDI-DGENSLTLNIRMDKMNSW 1406 (1492)
Q Consensus 1330 ~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~--~~~~~i~~~~~~~P~i~i~~~~~~~~~-~~~~~~~l~v~l~~~~~~ 1406 (1492)
++.+++|.++|+.++++|.+++.+++..+++. ..+++++++++++|+++|++++++... ..+..+++++.+++.+.
T Consensus 161 ~~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~~- 239 (312)
T smart00611 161 EEILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDE- 239 (312)
T ss_pred HHHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEccc-
Confidence 99999999999999999999999999988763 568999999999999999999877533 45677888888887531
Q ss_pred CCCCccccccCCCCccceEEEEEEeCCCCeEEEEEEeecCCcc-----eEEEEecCCCCCcceEEEEEEeCCCCCccEEE
Q 043190 1407 KNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSDRL-----NTHMELPSGITTFQGMKLVVVSDCYLGFEQEH 1481 (1492)
Q Consensus 1407 ~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~r~~~~~~~-----~~~~~~p~~~~~~~~~~v~~~sd~y~G~D~~~ 1481 (1492)
+..|.|+||++|||.++|+|++++++++.... ..+|.+|... |.+.|.|+++||+|+|+|+++
T Consensus 240 -----------~~~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~~~~l~f~~P~~~-~~~~~~v~v~SD~y~g~d~~~ 307 (312)
T smart00611 240 -----------IHGKQEGWWLVIGDSDGNELLHIERFSLNKKNVSEEVKLDFTAPATE-GNYQYTLRLVSDSYLGCDQEY 307 (312)
T ss_pred -----------ccCCcccEEEEEEeCCCCEEEEEEEEEEEeecCCCcEEEEEEecCCC-CcceEEEEEEecccCCcceEE
Confidence 12589999999999999999999999885543 3567789764 779999999999999999999
Q ss_pred EEEE
Q 043190 1482 SIEA 1485 (1492)
Q Consensus 1482 ~i~~ 1485 (1492)
++++
T Consensus 308 ~i~~ 311 (312)
T smart00611 308 PLSF 311 (312)
T ss_pred EEee
Confidence 9986
No 16
>smart00611 SEC63 Domain of unknown function in Sec63p, Brr2p and other proteins.
Probab=100.00 E-value=3.5e-47 Score=443.49 Aligned_cols=307 Identities=36% Similarity=0.675 Sum_probs=289.5
Q ss_pred eEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHHHHHHhcCCccccc-CCCCChh
Q 043190 339 FYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVK-GGPSNKH 417 (1492)
Q Consensus 339 ~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~-~~~~~~~ 417 (1492)
+.+|++|+++|+|||+++|+..|.+.+++.++..++|+++|.|+||.++++|.+|+.++++|.+. ++++.+ .....++
T Consensus 2 ~~~T~~Grias~yYI~~~T~~~f~~~l~~~~~~~~lL~~ls~a~Ef~~i~vR~~E~~~l~~l~~~-~~~~~~~~~~~~~~ 80 (312)
T smart00611 2 IWPTDLGRIASYYYISYTTIRTFNELLKPKMTTKDLLRILSMSSEFDQIPVRHEEDLLLEELAEK-LPIRLENPSLDDPH 80 (312)
T ss_pred cccchhHHHHhhhccChHHHHHHHHhcCCCCCHHHHHHHHhCcHhhCCCCCCccHHHHHHHHHHh-CCcCcCCCCCCCch
Confidence 57999999999999999999999999999999999999999999999999999999999999998 666554 4567899
Q ss_pred HHHHHHHHHHHcCCCCCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccccC
Q 043190 418 GKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKEL 497 (1492)
Q Consensus 418 ~K~~~Llqa~i~~~~~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i 497 (1492)
.|+++||||||+|++++.+++.+|+.+|+++|+||++||+|||..+||+..+.++++|+|||+||+|++++||+||| ++
T Consensus 81 ~K~~lLLqa~i~r~~l~~~~l~~D~~~vl~~a~rll~al~di~~~~~~~~~~~~~l~L~q~i~q~~w~~~~~L~Qlp-~i 159 (312)
T smart00611 81 VKANLLLQAHLSRLKLPSFALESDTVYVLQNAGRLLQAMVDIALERGWLSTALNALNLSQMIIQALWPTDSPLLQLP-HL 159 (312)
T ss_pred HHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhCCCCCccccCC-CC
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccCCceeEEEEEeecccceEEEEEEEecCCcccCC
Q 043190 498 PAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYFPSIQLSATVSPITRTVLKIGLAITPEFTWKDH 575 (1492)
Q Consensus 498 ~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~i~~~~~~~f~~~~~ 575 (1492)
+++.+++|+++|+ ++++|.++++++++.+++ +++++++|.+++++||++++++.++|++....++.+++++.|.|+..
T Consensus 160 ~~~~~~~l~~~~i~s~~~l~~~~~~~~~~ll~~~~~~~~~i~~~~~~~P~l~v~~~~~~~~~~~~~~~~~i~~~~~~~~~ 239 (312)
T smart00611 160 PEEILKRLEKKKVLSLEDLLELEDEERGELLGLLDAEGERVYKVLSRLPKLNIEISLEPITRTVLGVEVTLTVDLTWDDE 239 (312)
T ss_pred CHHHHHHHHhCCCCCHHHHHhcCHHHHHHHHcCCHHHHHHHHHHHHhCCcceeEEEEcCCcccccCceEEEEEEEEEccc
Confidence 9999999999998 999999999999999999 55899999999999999999999999999999999999999999999
Q ss_pred cCCcccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEEEEEeeccCCCCCcceeeeccCcccccceeEEecc
Q 043190 576 FHGAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEAFYCISF 649 (1492)
Q Consensus 576 ~h~~~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v~~~ip~~~p~p~~~~v~~~Sd~wl~~~~~~~i~~ 649 (1492)
+|++.|+||+||+|.++++|++.++++++++.... ...++|.+|...+. ++|.++++||+|+|++...++++
T Consensus 240 ~~~k~e~~~l~v~d~~~~~il~~~~~~~~~~~~~~-~~~l~f~~P~~~~~-~~~~v~v~SD~y~g~d~~~~i~~ 311 (312)
T smart00611 240 IHGKQEGWWLVIGDSDGNELLHIERFSLNKKNVSE-EVKLDFTAPATEGN-YQYTLRLVSDSYLGCDQEYPLSF 311 (312)
T ss_pred ccCCcccEEEEEEeCCCCEEEEEEEEEEEeecCCC-cEEEEEEecCCCCc-ceEEEEEEecccCCcceEEEEee
Confidence 99999999999999999999999999998876544 67889999987665 89999999999999999988875
No 17
>PF02889 Sec63: Sec63 Brl domain; InterPro: IPR004179 This domain was named after the yeast Sec63 (or NPL1) (also known as the Brl domain) protein in which it was found. This protein is required for assembly of functional endoplasmic reticulum translocons [, ]. Other yeast proteins containing this domain include pre-mRNA splicing helicase BRR2, HFM1 protein and putative helicases. ; PDB: 3IM2_A 3IM1_A 3HIB_A 2Q0Z_X.
Probab=100.00 E-value=2.3e-45 Score=429.50 Aligned_cols=306 Identities=33% Similarity=0.606 Sum_probs=240.3
Q ss_pred eCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHHHHHHhcCCcccc-cCCCCChhHH
Q 043190 341 CTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEV-KGGPSNKHGK 419 (1492)
Q Consensus 341 ~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~~l~~~~~~~~~-~~~~~~~~~K 419 (1492)
||++|+|||+|||+++||..|.+.+++.++..++|+++|.|.||+++++|++|++++++|+++ +|+++ ++....++.|
T Consensus 1 pT~lG~i~s~yyi~~~T~~~~~~~l~~~~~~~~il~~l~~a~EF~~i~~R~~E~~~l~~l~~~-~~~~~~~~~~~~~~~K 79 (314)
T PF02889_consen 1 PTELGRIMSRYYISFETMENFFESLKEDMSEKDILELLSSAEEFSEIPVRHNEKKELNELNKK-IPYPIKKEKINDPHIK 79 (314)
T ss_dssp ---CGC--------HHHHHHHHHH--TT--HHHHHHHHHTSGGGCCS---TTHHHHHHHHHCC-SSS--STS-TTSHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHCCCCCCHHHHHHHHcCcHhHhhCccchhhHHHHHHHHHh-cccCccccccccHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999998 88888 7778899999
Q ss_pred HHHHHHHHHcCCCCCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccccCCH
Q 043190 420 ISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPA 499 (1492)
Q Consensus 420 ~~~Llqa~i~~~~~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~ 499 (1492)
+++||||||+|++++..+|.+|+.+|+++++||++||+|||..+||+..+.++++|+|||+||+|++.+||+||| ++++
T Consensus 80 ~~~Llqa~l~r~~l~~~~l~~D~~~i~~~~~Rll~a~~ei~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~L~Qlp-~i~~ 158 (314)
T PF02889_consen 80 AFVLLQAHLSRIPLPDSSLRQDLKYILDNAPRLLRAMIEIALEKGWLSTALNALELSQCIVQALWDSDSPLLQLP-HIGE 158 (314)
T ss_dssp HHHHHHHHHCT-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBCCHHHHHHHHHHHHHHTS-TTS-GGGGST-T--H
T ss_pred HHHHHHHhccCCCcCchhHHhhHHhhhhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhcCCCCChhhcCC-CCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999998899999999 9999
Q ss_pred HHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccCCceeEEEEEeecccce---EEEEEEEecCCcccC
Q 043190 500 EILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYFPSIQLSATVSPITRTV---LKIGLAITPEFTWKD 574 (1492)
Q Consensus 500 ~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~---~~i~~~~~~~f~~~~ 574 (1492)
+.+++|.++|+ |+++|.++++++++.+++ ++++++++.+++++||+++++++++|++... +++.|.+++.|.|+.
T Consensus 159 ~~~~~l~~~~i~~l~~l~~~~~~e~~~ll~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~~~~~~v~v~i~~~~~~~~ 238 (314)
T PF02889_consen 159 ESLKKLEKRGIKTLQDLRDLSPEELEELLNRNPPFGKEILEVASRIPRLEIKASVQVIDEEIVPILTVQVSITRKFSWSD 238 (314)
T ss_dssp HHHHHHHHTT--SHHHHHHS-HHHHHHHH-S-HHHHHHHHHHHCCS--EEEEEEETTCCGEECSEEEEEEEEEESSS-SS
T ss_pred HHHHHHhccCCCcHHHHhhCCHHHHHHHHhhhhhhHHHHHHHHHHCCCEEEEEEEeccccccCCcEEEEEEEEccccccc
Confidence 99999999997 999999999999999998 8899999999999999999999999998877 999999999999999
Q ss_pred CcCCc-ccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEEEEEeecc-CCCCCcceeeeccCcccccceeEEecc
Q 043190 575 HFHGA-AQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIF-EPHPPQYYIRAVSDSWLHAEAFYCISF 649 (1492)
Q Consensus 575 ~~h~~-~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v~~~ip~~-~p~p~~~~v~~~Sd~wl~~~~~~~i~~ 649 (1492)
+||+. .++||++|+|.+++.+++++++++.++... ....++|.+|.. .|.+.+|.++++||+|+|.+...+++|
T Consensus 239 ~~~~~k~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~-~~~~~~f~vp~~~~~~~~~~~v~v~sd~y~G~d~~~~i~~ 314 (314)
T PF02889_consen 239 RFPKKKKESWWLFVGDSKNNELLHFERITISKKKSK-DTVKISFQVPIPVGPRPYQYTVYVISDSYLGLDQEVPINF 314 (314)
T ss_dssp T-SS--B--EEEEEEECCCTEEEEEEEE---SS--E-EEEEEEEE--SS-EE--EEEEEEEEESS-SS--EEEEEEE
T ss_pred CCCCCCcccEEEEEEECCCCeEEEEeeeehhhhccC-CcEEEEEEecCCCCCCCceEEEEEEECCccccceEEEeeC
Confidence 99988 999999999999999999999999322111 267888999875 555589999999999999999888765
No 18
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-44 Score=386.58 Aligned_cols=337 Identities=20% Similarity=0.275 Sum_probs=259.9
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC-CceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS-DMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~-~~~~l~i~P~r~La~q~~ 751 (1492)
+.++..+++- ++..|+++|++++|.++ +|+++|..|.||||||.+|.+||++.+..++ ...+++++|||+||.|+.
T Consensus 68 v~~~L~~ac~~l~~~~PT~IQ~~aiP~~L-~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~ 146 (476)
T KOG0330|consen 68 VHPELLEACQELGWKKPTKIQSEAIPVAL-GGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIA 146 (476)
T ss_pred cCHHHHHHHHHhCcCCCchhhhhhcchhh-CCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHH
Confidence 3445555544 89999999999999998 8999999999999999999999999887653 478999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-CCCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~~~g~~ 827 (1492)
+.+.. ++...|+++..+.|+.+.... ...+++|+|+|||+|...+.+... ..+..++++|+||||.+. .+++..
T Consensus 147 e~fe~-Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkg-f~le~lk~LVlDEADrlLd~dF~~~ 224 (476)
T KOG0330|consen 147 EQFEA-LGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKG-FSLEQLKFLVLDEADRLLDMDFEEE 224 (476)
T ss_pred HHHHH-hccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccC-ccHHHhHHHhhchHHhhhhhhhHHH
Confidence 99876 777679999999998765432 345899999999998777775332 348899999999999765 478888
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccC-cEEEEeccCCccccccccccCh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVP-LEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~-l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
++.|+..+. ...|.+++|||++. ...+.. -..+.+.....+..++.++ +...+.-++.. .+.
T Consensus 225 ld~ILk~ip-------~erqt~LfsATMt~kv~kL~r-asl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k--------~K~ 288 (476)
T KOG0330|consen 225 LDYILKVIP-------RERQTFLFSATMTKKVRKLQR-ASLDNPVKVAVSSKYQTVDHLKQTYLFVPGK--------DKD 288 (476)
T ss_pred HHHHHHhcC-------ccceEEEEEeecchhhHHHHh-hccCCCeEEeccchhcchHHhhhheEecccc--------ccc
Confidence 888877653 58899999999975 233321 1111111111122222222 11111111111 111
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
..+-.+.+...++++||||++...+..++-.|. .+++....+||.|
T Consensus 289 ~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~----------------------------------~lg~~a~~LhGqm 334 (476)
T KOG0330|consen 289 TYLVYLLNELAGNSVIVFCNTCNTTRFLALLLR----------------------------------NLGFQAIPLHGQM 334 (476)
T ss_pred hhHHHHHHhhcCCcEEEEEeccchHHHHHHHHH----------------------------------hcCcceecccchh
Confidence 222334445667999999999999999987663 3478889999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC--HHHHHHhhcccCCCCCCCceEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP--ITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~--~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
++..|...++.|++|...|||||++++||+|+|.+++||+ +|+| ..+|+||+||+||+| .+|.+
T Consensus 335 sq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN------------yDiP~~skDYIHRvGRtaRaG--rsG~~ 400 (476)
T KOG0330|consen 335 SQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN------------YDIPTHSKDYIHRVGRTARAG--RSGKA 400 (476)
T ss_pred hHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe------------cCCCCcHHHHHHHcccccccC--CCcce
Confidence 9999999999999999999999999999999999999999 4555 779999999999999 99999
Q ss_pred EEEecCCcHHHHHHh
Q 043190 1064 VILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1064 i~l~~~~~~~~~~~~ 1078 (1492)
+.+++..+.+.|.++
T Consensus 401 ItlVtqyDve~~qrI 415 (476)
T KOG0330|consen 401 ITLVTQYDVELVQRI 415 (476)
T ss_pred EEEEehhhhHHHHHH
Confidence 999999887776654
No 19
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.2e-42 Score=440.72 Aligned_cols=341 Identities=19% Similarity=0.250 Sum_probs=258.1
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
||+.|+++|.++++.++ .|+|+++++|||||||++|.+|+++.+...++.++||++|||+||.|+++.+.. +. ..++
T Consensus 33 g~~~p~~~Q~~ai~~il-~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~-l~-~~~i 109 (742)
T TIGR03817 33 GIHRPWQHQARAAELAH-AGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRE-LT-LRGV 109 (742)
T ss_pred CCCcCCHHHHHHHHHHH-CCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHH-hc-cCCe
Confidence 89999999999999998 889999999999999999999999998776678999999999999999999987 44 3378
Q ss_pred EEEEEcCCCCcchhc--cCCCcEEEECchhhhH-hhhcc-cCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhh
Q 043190 765 EMVEMTGDYTPDLMA--LLSADIIISTPEKWDG-ISRNW-HSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISS 840 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~--~~~~~Iiv~Tpe~l~~-l~~~~-~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~ 840 (1492)
++..++|+...+.+. ..+++|+|+||+++.. ++... ....+++++++|||||||.+.+.+|..+..++.+++.+..
T Consensus 110 ~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~ 189 (742)
T TIGR03817 110 RPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCA 189 (742)
T ss_pred EEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHH
Confidence 899999998754432 3468999999998853 33221 1123478999999999999876789999999999998887
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcE-EEEeccC-----Ccccccccccc---ChhHHHHH
Q 043190 841 QTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLE-VHIQGYP-----GKFYCPRMNSM---NKPAYAAI 911 (1492)
Q Consensus 841 ~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~-~~~~~~~-----~~~~~~~~~~~---~~~~~~~l 911 (1492)
..+.++|++++|||++|+.++++++...+..++ .....+.... ..+...+ ........... .......+
T Consensus 190 ~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l 267 (742)
T TIGR03817 190 RYGASPVFVLASATTADPAAAASRLIGAPVVAV--TEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADL 267 (742)
T ss_pred hcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEE--CCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHH
Confidence 777789999999999998888877654443222 2222222111 1110000 00000000000 00111122
Q ss_pred hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHH
Q 043190 912 CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRS 991 (1492)
Q Consensus 912 ~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 991 (1492)
. ..+.++||||+|++.|+.++..+.+..... ...++.++..|||++++++|+
T Consensus 268 ~--~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~--------------------------~~~l~~~v~~~hgg~~~~eR~ 319 (742)
T TIGR03817 268 V--AEGARTLTFVRSRRGAELVAAIARRLLGEV--------------------------DPDLAERVAAYRAGYLPEDRR 319 (742)
T ss_pred H--HCCCCEEEEcCCHHHHHHHHHHHHHHHHhh--------------------------ccccccchhheecCCCHHHHH
Confidence 1 236799999999999999998886543210 011245788999999999999
Q ss_pred HHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 992 LVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 992 ~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
.+++.|++|++++||||+++++|||+|++++||+ |+ ++.+..+|+||+|||||.| ..|.+++++.+.
T Consensus 320 ~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~----~~------~P~s~~~y~qRiGRaGR~G--~~g~ai~v~~~~ 386 (742)
T TIGR03817 320 ELERALRDGELLGVATTNALELGVDISGLDAVVI----AG------FPGTRASLWQQAGRAGRRG--QGALVVLVARDD 386 (742)
T ss_pred HHHHHHHcCCceEEEECchHhccCCcccccEEEE----eC------CCCCHHHHHHhccccCCCC--CCcEEEEEeCCC
Confidence 9999999999999999999999999999999998 44 3346999999999999988 789999998754
No 20
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=9.8e-43 Score=451.13 Aligned_cols=396 Identities=22% Similarity=0.331 Sum_probs=283.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-------CCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-------QSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-------~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
+|..|+|+|.++++.++ .|+|++++||||||||++|.+|++..+.. .++.+++|++|+|+|+.|+++++...
T Consensus 29 ~~~~~tpiQ~~Ai~~il-~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~ 107 (876)
T PRK13767 29 KFGTFTPPQRYAIPLIH-EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEP 107 (876)
T ss_pred ccCCCCHHHHHHHHHHH-cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHH
Confidence 78899999999999987 78999999999999999999999987653 12467999999999999999876642
Q ss_pred hh----------hcc-CCEEEEEcCCCCcchhc---cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-C
Q 043190 758 LV----------SQL-GKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-A 822 (1492)
Q Consensus 758 ~~----------~~~-g~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~ 822 (1492)
+. ... ++++...+||.....+. ...++|+|||||+|..++.+......++++++|||||+|.+. +
T Consensus 108 l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~ 187 (876)
T PRK13767 108 LTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAEN 187 (876)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccC
Confidence 21 112 67889999998765432 246899999999998888764444468899999999999886 4
Q ss_pred CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcc------eeEecCCCccccCcEEEEeccCCccc
Q 043190 823 ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEI------GLFNFKPSVRPVPLEVHIQGYPGKFY 896 (1492)
Q Consensus 823 ~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~------~~~~~~~~~r~~~l~~~~~~~~~~~~ 896 (1492)
.+|..++..+.++..+. +...|+|++|||+++.++++.|++.... ..+......++..+..... .. ...
T Consensus 188 ~RG~~l~~~L~rL~~l~---~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p-~~-~l~ 262 (876)
T PRK13767 188 KRGVHLSLSLERLEELA---GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISP-VD-DLI 262 (876)
T ss_pred ccHHHHHHHHHHHHHhc---CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEecc-Cc-ccc
Confidence 79999999999998764 3478999999999999999999975321 1111111112222221110 00 000
Q ss_pred cccccccChhHHHHHhhc-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhc
Q 043190 897 CPRMNSMNKPAYAAICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQ 975 (1492)
Q Consensus 897 ~~~~~~~~~~~~~~l~~~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 975 (1492)
...........+..+... ..++++||||||++.|+.++..|.+.... ...+
T Consensus 263 ~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~----------------------------~~~~ 314 (876)
T PRK13767 263 HTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPE----------------------------EYDE 314 (876)
T ss_pred ccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchh----------------------------hccc
Confidence 000111112223333221 34678999999999999999888653211 0124
Q ss_pred cceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCC
Q 043190 976 FGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRP 1055 (1492)
Q Consensus 976 ~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~ 1055 (1492)
.++.+|||+|++++|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.++.+|+||+|||||.
T Consensus 315 ~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~~------P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 315 DNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL----LGS------PKSVSRLLQRIGRAGHR 384 (876)
T ss_pred cceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----eCC------CCCHHHHHHhcccCCCC
Confidence 68999999999999999999999999999999999999999999999997 443 33699999999999986
Q ss_pred CC-CCceEEEEEecCCc-HH---HHHHhhc---CCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecc
Q 043190 1056 QY-DQHGKAVILVHEPK-KS---FYKKFLY---EPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLA 1126 (1492)
Q Consensus 1056 g~-~~~G~~i~l~~~~~-~~---~~~~~l~---~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~ 1126 (1492)
+. ...|.++... ..+ .+ ..+.+.. ++..+...-.+.|..|+.+.++.+ ..+.+++.+++..||.|+.+.
T Consensus 385 ~g~~~~g~ii~~~-~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~ 461 (876)
T PRK13767 385 LGEVSKGRIIVVD-RDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIER-PWDIEEAYNIVRRAYPYRDLS 461 (876)
T ss_pred CCCCCcEEEEEcC-chhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcC-CCCHHHHHHHHhccCCcccCC
Confidence 42 2345544432 222 11 1122221 122222233456888988877775 568999999999999998653
No 21
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=1.1e-42 Score=413.35 Aligned_cols=651 Identities=23% Similarity=0.333 Sum_probs=449.3
Q ss_pred hhcCCCCCCHHHHHHHH--hhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 682 ALYNFSHFNPIQTQIFH--ILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~--~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
..+|...++.+|.+|+. .++ .++|.|.++||+.|||+++++.+++.... ....++.+.|..+.+.+....+.....
T Consensus 217 ~~kgi~~~fewq~ecls~~~~~-e~~nliys~Pts~gktlvaeilml~~~l~-~rr~~llilp~vsiv~Ek~~~l~~~~~ 294 (1008)
T KOG0950|consen 217 KDKGILKLFEWQAECLSLPRLL-ERKNLIYSLPTSAGKTLVAEILMLREVLC-RRRNVLLILPYVSIVQEKISALSPFSI 294 (1008)
T ss_pred HhhhHHHHHHHHHHHhcchhhh-cccceEEeCCCccchHHHHHHHHHHHHHH-HhhceeEecceeehhHHHHhhhhhhcc
Confidence 33488889999999985 566 88999999999999999999999987655 267899999999999998888877444
Q ss_pred hccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHh
Q 043190 760 SQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYI 838 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~ 838 (1492)
. +|+.|..+.|...+.. ..+..++.|||.|+-..+.........+..+++||+||.|++++ +||..+|.+++.+.+.
T Consensus 295 ~-~G~~ve~y~g~~~p~~-~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 295 D-LGFPVEEYAGRFPPEK-RRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred c-cCCcchhhcccCCCCC-cccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 4 4999999988776543 34567999999999888877766666788999999999999986 7999999999999876
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccc-ccccc--------------
Q 043190 839 SSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCP-RMNSM-------------- 903 (1492)
Q Consensus 839 ~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~-~~~~~-------------- 903 (1492)
.... ..|+||||||++|..+++.|++... +...+||+++...+..-. ..+.. +....
T Consensus 373 ~~~~--~~~iIGMSATi~N~~lL~~~L~A~~-----y~t~fRPv~L~E~ik~G~-~i~~~~r~~~lr~ia~l~~~~~g~~ 444 (1008)
T KOG0950|consen 373 NLET--SVQIIGMSATIPNNSLLQDWLDAFV-----YTTRFRPVPLKEYIKPGS-LIYESSRNKVLREIANLYSSNLGDE 444 (1008)
T ss_pred cccc--ceeEeeeecccCChHHHHHHhhhhh-----eecccCcccchhccCCCc-ccccchhhHHHHHhhhhhhhhcccC
Confidence 6433 4899999999999999999998432 466789999876653211 11111 11100
Q ss_pred ChhHHHHH--hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCC-CChHHHHHH---HhhcCcHHHHHHhccc
Q 043190 904 NKPAYAAI--CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG-MPEEDLQMV---LSQVTDQNLRQTLQFG 977 (1492)
Q Consensus 904 ~~~~~~~l--~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~l~~~~~~~ 977 (1492)
+...+..+ ....++.++||||++|+.|+.+|..+....+.......+.. ......... ....-|..+..++.+|
T Consensus 445 dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~G 524 (1008)
T KOG0950|consen 445 DPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYG 524 (1008)
T ss_pred CCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheecccc
Confidence 00000001 11234567999999999999999887776544322222222 011111111 1222467788899999
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCC
Q 043190 978 IGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQY 1057 (1492)
Q Consensus 978 v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~ 1057 (1492)
+++||+|++.++|+.|+..|+.|.+.|++||+++++|+|+|+.+|+|. .+++.. -.+...+|.||+|||||+|.
T Consensus 525 vAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIir-aP~~g~-----~~l~~~~YkQM~GRAGR~gi 598 (1008)
T KOG0950|consen 525 VAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIR-APYVGR-----EFLTRLEYKQMVGRAGRTGI 598 (1008)
T ss_pred ceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEe-CCcccc-----chhhhhhHHhhhhhhhhccc
Confidence 999999999999999999999999999999999999999999999997 222222 12357799999999999999
Q ss_pred CCceEEEEEecCCcHHHHHHhhcCCC-ceeeccccc----chhhhHHHhhhCcccCHHHHHHHHhhchheeecccCcccc
Q 043190 1058 DQHGKAVILVHEPKKSFYKKFLYEPF-PVESSLRDQ----LHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYY 1132 (1492)
Q Consensus 1058 ~~~G~~i~l~~~~~~~~~~~~l~~~~-pies~l~~~----l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y 1132 (1492)
|..|.+++++...+...+..++..+. |..|++.+. ....++..|..+...+.+|...+...|+++..-. |.+-
T Consensus 599 dT~GdsiLI~k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di~~~va~tl~s~q~~--~~~~ 676 (1008)
T KOG0950|consen 599 DTLGDSILIIKSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDILHFVAVTLLSAQEK--PENV 676 (1008)
T ss_pred ccCcceEEEeeccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHHHHHHHHhhhhcccc--hhhh
Confidence 99999999999999888888887665 456666443 2234556667777788999999999998876421 1111
Q ss_pred CCCCCCcccHHHHHHHHHHHHH-HHhHHCCCcee-cCC--ccccccchhhhhhccccHHHHHHHHhccCCC---CCHHHH
Q 043190 1133 GLEDTEAEGLSSYLSRLVQNTF-EDLEDSGCVKM-TED--TVEPTMLGTIASQYYLSYVTVSMFGSNIGPD---TSLEVF 1205 (1492)
Q Consensus 1133 ~~~~~~~~~~~~~l~~~i~~~l-~~L~~~~~i~~-~~~--~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~---~~~~~l 1205 (1492)
..+. +..+..+. +..+. +.+....+|.. ..+ ...+|.+|++.=.-++++.-+..++..+... ...+.-
T Consensus 677 ~~~l---e~~s~ql~--~~~~~~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~~~~a~~l~~~L~~~~~~~vle~~ 751 (1008)
T KOG0950|consen 677 REQL---EMESDQLV--INDFKSDQLLEKDFIYKKQIENLRENITRLGRACFNAGSDPEVANILFADLKKSLPQLVLESS 751 (1008)
T ss_pred hhcc---cchhhhhc--cchhhHHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCChhhhHHHHHHHHHhhhccccccc
Confidence 1111 00000000 00000 12222222221 000 0227999999988899998888777655432 222222
Q ss_pred HHHHhCCCCCCCCcCCC--------------ChhHHHHHhh-------cccceeecCCCCCC-h---hHHHHHHHHHHhc
Q 043190 1206 LHILSGASEYDELPVRH--------------NEDNHNEALS-------QRVRFAVDNNRLDD-P---HVKANLLFQAHFS 1260 (1492)
Q Consensus 1206 l~ils~a~Ef~~i~~R~--------------~e~~~l~~l~-------~~~~~~~~~~~~~~-~---~~K~~lLlqa~l~ 1260 (1492)
++++-....|.+..--. .+....+.+. +.+.-.. .....+ + ..-+.+.+|..++
T Consensus 752 lh~lylvtP~~~~~~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~fi~~~~~gqs-~~~~~~~~~~~r~y~~l~L~~li~ 830 (1008)
T KOG0950|consen 752 LHLLYLVTPYLEVMNDIDWLIYFQIYHTLPSPEQKLAKLLGVIESFIEKCVSGQS-VRNLQNVQKRKRLYVALALQKLIN 830 (1008)
T ss_pred cceeeeecchHhhcccccHHHHHHHHhcCCcHHHHHHhhhchHHHHHHHhhhccc-cccccchhHHHHHHHHHHHHHHHh
Confidence 23333323321110000 1111111110 0000000 011111 1 2336678999999
Q ss_pred CCCCCC--cch---HhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHhhcccCCCCcccccCCCCHHHHH
Q 043190 1261 RLDLPI--SDY---VTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMH-LLQMVMQGLWFEQDSALWMFPCMNNDLLG 1334 (1492)
Q Consensus 1261 r~~l~~--~~l---~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~-l~q~i~q~~w~~~~~~L~qlp~i~~~~~~ 1334 (1492)
..++.. .+| .+=+...++++.....+..-.|.+.+|. +...++. +.+.+..|.-.+ ..||+.+|++...+++
T Consensus 831 espi~~V~~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~-~~~~l~~~~~~rl~~g~~~e-L~~Lmrv~~~~~~RAr 908 (1008)
T KOG0950|consen 831 ESPIRTVAEKYKVERGRLQALLSNASSFASLITFFCESIQWF-PLRALLSEFYGRLSFGGHAE-LIPLMRVPDVKAERAR 908 (1008)
T ss_pred hCcHHHHHHHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhc-chHHHHHHHHHHHhccchhh-hhhhhcCchhHHHHHH
Confidence 988762 455 5677888999999999999889999998 4444444 778888888777 8999999999999999
Q ss_pred HHHhCCCCCHHHHhcCCHHHHhhhhC
Q 043190 1335 TLRARGISTVQQLLDIPKENLQTVIG 1360 (1492)
Q Consensus 1335 ~l~~~~i~s~~~l~~~~~~~~~~~l~ 1360 (1492)
.|+.+|++|+.++++.++.++.+.+.
T Consensus 909 ~lf~Agf~tv~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 909 QLFKAGFTSVGSIANATPEKLVKELP 934 (1008)
T ss_pred HHHHhhccchHHHhcCChHHHHHHhh
Confidence 99999999999999998877766543
No 22
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-43 Score=408.62 Aligned_cols=327 Identities=20% Similarity=0.245 Sum_probs=250.6
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-------CCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-------QSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-------~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
||+.|+|||.++|+.++ .|++++..|.||||||++|++|++.++.. .+++++|+++|||+||.|+.+.+.+
T Consensus 110 g~~~PtpIQaq~wp~~l-~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~- 187 (519)
T KOG0331|consen 110 GFEKPTPIQAQGWPIAL-SGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEARE- 187 (519)
T ss_pred CCCCCchhhhcccceec-cCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHH-
Confidence 99999999999999999 89999999999999999999999998875 2468999999999999999998877
Q ss_pred hhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-CCCccHHHHHHH
Q 043190 758 LVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVS 833 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~~~g~~~~~i~~ 833 (1492)
++..+++++.+++|+.+...+ ...+.+|+|+||+++.+++.. ....++++.++|+||||.|. .++.++++.|+.
T Consensus 188 ~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~--g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~ 265 (519)
T KOG0331|consen 188 FGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEE--GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILS 265 (519)
T ss_pred HcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHc--CCccccceeEEEeccHHhhhccccHHHHHHHHH
Confidence 666557888889998765432 234689999999999999987 44558999999999999765 478889988888
Q ss_pred HHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCC--ccccCcEEEEeccCCccccccccccChhHHHH
Q 043190 834 RMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPS--VRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAA 910 (1492)
Q Consensus 834 ~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~--~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1492)
.+. +...|.++.|||.|. ...++.-+-..+..+...... .....+...+. .+. .......+...
T Consensus 266 ~i~------~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive------~~~-~~~K~~~l~~l 332 (519)
T KOG0331|consen 266 QIP------RPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVE------VCD-ETAKLRKLGKL 332 (519)
T ss_pred hcC------CCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhh------hcC-HHHHHHHHHHH
Confidence 762 234489999999987 455554332233222111110 00000000000 011 01111112222
Q ss_pred Hhh--cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHH
Q 043190 911 ICT--HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDK 988 (1492)
Q Consensus 911 l~~--~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 988 (1492)
+.. ...++++||||+|++.|..++..+... ++++..+||+.++.
T Consensus 333 L~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~----------------------------------~~~a~~iHGd~sQ~ 378 (519)
T KOG0331|consen 333 LEDISSDSEGKVIIFCETKRTCDELARNLRRK----------------------------------GWPAVAIHGDKSQS 378 (519)
T ss_pred HHHHhccCCCcEEEEecchhhHHHHHHHHHhc----------------------------------CcceeeecccccHH
Confidence 222 346779999999999999999877432 46789999999999
Q ss_pred HHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 989 DRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 989 ~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
+|..+++.|++|+..|||||+++++|+|+|++++||+ ||. +-+.++|+||+||+||+| ..|.++.|++
T Consensus 379 eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydf------P~~vEdYVHRiGRTGRa~--~~G~A~tfft 446 (519)
T KOG0331|consen 379 ERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN----YDF------PNNVEDYVHRIGRTGRAG--KKGTAITFFT 446 (519)
T ss_pred HHHHHHHhcccCCcceEEEcccccccCCCccccEEEe----CCC------CCCHHHHHhhcCccccCC--CCceEEEEEe
Confidence 9999999999999999999999999999999999999 543 225999999999999987 8999999998
Q ss_pred CCcHHH
Q 043190 1069 EPKKSF 1074 (1492)
Q Consensus 1069 ~~~~~~ 1074 (1492)
..+...
T Consensus 447 ~~~~~~ 452 (519)
T KOG0331|consen 447 SDNAKL 452 (519)
T ss_pred HHHHHH
Confidence 876544
No 23
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.7e-42 Score=421.70 Aligned_cols=406 Identities=23% Similarity=0.315 Sum_probs=312.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC------CCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ------SDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~------~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
.|..|||.|.++++.+. +|+|++|+||||||||+++.+|++..+... .+-.+|||+|.|||.+++..++....
T Consensus 19 ~~~~~t~~Q~~a~~~i~-~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~ 97 (814)
T COG1201 19 KFTSLTPPQRYAIPEIH-SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPL 97 (814)
T ss_pred hcCCCCHHHHHHHHHHh-CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHH
Confidence 68999999999999998 899999999999999999999999987654 13579999999999999999998755
Q ss_pred hhccCCEEEEEcCCCCcchhc---cCCCcEEEECchhhhHhhhcccCccccCcccEEEEeccccc-CCCCccHHHHHHHH
Q 043190 759 VSQLGKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL-GAERGPILEVIVSR 834 (1492)
Q Consensus 759 ~~~~g~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l-~~~~g~~~~~i~~~ 834 (1492)
. .+|+.+..-+||++...+. .+.+||+++|||.|..++.....+..+.+++++||||+|.+ +++||.++...+.|
T Consensus 98 ~-~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeR 176 (814)
T COG1201 98 R-ELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLER 176 (814)
T ss_pred H-HcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHH
Confidence 5 4599999999999876543 34679999999999888877666778999999999999976 46899999999999
Q ss_pred HHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCc-ceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhh
Q 043190 835 MRYISSQTERAVRFIGLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICT 913 (1492)
Q Consensus 835 l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~-~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 913 (1492)
++.+.. ++|.||+|||+.+++++++|++... ...+.-....++..+.+.......... .......+..+..
T Consensus 177 L~~l~~----~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~----~~~~~~~~~~i~~ 248 (814)
T COG1201 177 LRELAG----DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD----EELWAALYERIAE 248 (814)
T ss_pred HHhhCc----ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc----cchhHHHHHHHHH
Confidence 997753 8899999999999999999998875 222222333444444443322111111 1111222222221
Q ss_pred c-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 914 H-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 914 ~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
. ...+.+|||+|||..++.++..|.+.. ...+..|||+++.+.|..
T Consensus 249 ~v~~~~ttLIF~NTR~~aE~l~~~L~~~~---------------------------------~~~i~~HHgSlSre~R~~ 295 (814)
T COG1201 249 LVKKHRTTLIFTNTRSGAERLAFRLKKLG---------------------------------PDIIEVHHGSLSRELRLE 295 (814)
T ss_pred HHhhcCcEEEEEeChHHHHHHHHHHHHhc---------------------------------CCceeeecccccHHHHHH
Confidence 1 334589999999999999998885532 267999999999999999
Q ss_pred HHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 993 VEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 993 v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
++++|++|+++++|||++++-|||+.+++.||+ |.++ .+++.++||+||+|+. .+....+++++.+ ..
T Consensus 296 vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq----~~SP------~sV~r~lQRiGRsgHr-~~~~Skg~ii~~~-r~ 363 (814)
T COG1201 296 VEERLKEGELKAVVATSSLELGIDIGDIDLVIQ----LGSP------KSVNRFLQRIGRAGHR-LGEVSKGIIIAED-RD 363 (814)
T ss_pred HHHHHhcCCceEEEEccchhhccccCCceEEEE----eCCc------HHHHHHhHhccccccc-cCCcccEEEEecC-HH
Confidence 999999999999999999999999999999998 5433 3689999999999984 4566778888776 33
Q ss_pred HHHHH------hhc---CCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHH
Q 043190 1073 SFYKK------FLY---EPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLS 1143 (1492)
Q Consensus 1073 ~~~~~------~l~---~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~ 1143 (1492)
+.++. ... ++.++...-.+.|.+|+++.+... --+.+++.+.+..+|.|+.+. .
T Consensus 364 dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~L~---------~------- 426 (814)
T COG1201 364 DLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYADLS---------R------- 426 (814)
T ss_pred HHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhccccccCC---------H-------
Confidence 33222 111 134444555677899999888887 677999999999999987543 1
Q ss_pred HHHHHHHHHHHHHhHH--CCCceec
Q 043190 1144 SYLSRLVQNTFEDLED--SGCVKMT 1166 (1492)
Q Consensus 1144 ~~l~~~i~~~l~~L~~--~~~i~~~ 1166 (1492)
+..++.++.|.. .+.+...
T Consensus 427 ----e~f~~v~~~l~~~~~~~~~i~ 447 (814)
T COG1201 427 ----EDFRLVLRYLAGEKNVYAKIW 447 (814)
T ss_pred ----HHHHHHHHHHhhcccceeEEe
Confidence 334567777777 5555443
No 24
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-42 Score=377.04 Aligned_cols=356 Identities=20% Similarity=0.254 Sum_probs=274.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC----CceEEEEcccHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS----DMKVVYIAPLKAIVR 748 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~----~~~~l~i~P~r~La~ 748 (1492)
|..++++++. ||..|+|+|.++||.++ -|++++.||.||||||.+|.+|+|+.+.-.+ ..++|+++|||+|+.
T Consensus 188 LSRPlLka~~~lGy~~PTpIQ~a~IPval-lgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELai 266 (691)
T KOG0338|consen 188 LSRPLLKACSTLGYKKPTPIQVATIPVAL-LGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAI 266 (691)
T ss_pred cchHHHHHHHhcCCCCCCchhhhcccHHh-hcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHH
Confidence 3445566654 99999999999999887 7999999999999999999999999876433 358999999999999
Q ss_pred HHHHHHHHHhhhccCCEEEEEcCCCCcchhc---cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CC
Q 043190 749 ERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER 824 (1492)
Q Consensus 749 q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~ 824 (1492)
|++...++ ++.+..+.|+...|+.+...+. ...+||+|+|||+|.+.+++... ..++++.++|+||||.|.+ .+
T Consensus 267 Qv~sV~~q-laqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~s-f~ldsiEVLvlDEADRMLeegF 344 (691)
T KOG0338|consen 267 QVHSVTKQ-LAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPS-FNLDSIEVLVLDEADRMLEEGF 344 (691)
T ss_pred HHHHHHHH-HHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCC-ccccceeEEEechHHHHHHHHH
Confidence 99988776 7777789999999988754332 34789999999999999998543 4589999999999997754 34
Q ss_pred ccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccccccc
Q 043190 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM 903 (1492)
Q Consensus 825 g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 903 (1492)
...+.. +...++.+.|.+++|||+.. .++++..--.++..++.-.+...+..+...+..+.. .....
T Consensus 345 ademnE-------ii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~-----~re~d 412 (691)
T KOG0338|consen 345 ADEMNE-------IIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRP-----KREGD 412 (691)
T ss_pred HHHHHH-------HHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheecc-----ccccc
Confidence 334433 33345678999999999976 566666544455566654444444444433322111 01111
Q ss_pred ChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecC
Q 043190 904 NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHA 983 (1492)
Q Consensus 904 ~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~ 983 (1492)
....+..+....-...++||+.|++.|..+.-.| .+++..++-+||
T Consensus 413 Rea~l~~l~~rtf~~~~ivFv~tKk~AHRl~Ill----------------------------------GLlgl~agElHG 458 (691)
T KOG0338|consen 413 REAMLASLITRTFQDRTIVFVRTKKQAHRLRILL----------------------------------GLLGLKAGELHG 458 (691)
T ss_pred cHHHHHHHHHHhcccceEEEEehHHHHHHHHHHH----------------------------------HHhhchhhhhcc
Confidence 2233444444444678999999999988775433 667888999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEE
Q 043190 984 GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 984 ~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
+|++.+|...++.|++++++|||||+++++|+||+++.+||+ |+ .+.+...|+||+||+.|+| +.|.+
T Consensus 459 sLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~------mP~t~e~Y~HRVGRTARAG--RaGrs 526 (691)
T KOG0338|consen 459 SLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVIN----YA------MPKTIEHYLHRVGRTARAG--RAGRS 526 (691)
T ss_pred cccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEe----cc------CchhHHHHHHHhhhhhhcc--cCcce
Confidence 999999999999999999999999999999999999999998 33 2334789999999999999 89999
Q ss_pred EEEecCCcHHHHHHhhcCCCceeecccc
Q 043190 1064 VILVHEPKKSFYKKFLYEPFPVESSLRD 1091 (1492)
Q Consensus 1064 i~l~~~~~~~~~~~~l~~~~pies~l~~ 1091 (1492)
+.|+.+++...++..+.......+.+..
T Consensus 527 VtlvgE~dRkllK~iik~~~~a~~klk~ 554 (691)
T KOG0338|consen 527 VTLVGESDRKLLKEIIKSSTKAGSKLKN 554 (691)
T ss_pred EEEeccccHHHHHHHHhhhhhcccchhh
Confidence 9999999988888888765444444443
No 25
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=7.2e-41 Score=413.30 Aligned_cols=340 Identities=20% Similarity=0.252 Sum_probs=247.0
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc--------CCCceEEEEcccH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT--------QSDMKVVYIAPLK 744 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~--------~~~~~~l~i~P~r 744 (1492)
|+....+.+. ||..|+|+|.++++.++ .|+|++++||||||||++|++|++..+.. ..++++||++|||
T Consensus 128 l~~~l~~~L~~~g~~~ptpiQ~~aip~il-~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTr 206 (518)
T PLN00206 128 LPPKLLLNLETAGYEFPTPIQMQAIPAAL-SGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTR 206 (518)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCH
Confidence 4444555544 99999999999999998 78999999999999999999999987532 1467899999999
Q ss_pred HHHHHHHHHHHHHhhhccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC
Q 043190 745 AIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG 821 (1492)
Q Consensus 745 ~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~ 821 (1492)
+||.|+.+.++. +....+.++..+.|+..... ....+++|+|+|||+|..++.+. ...+++++++|+||||++.
T Consensus 207 eLa~Qi~~~~~~-l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~--~~~l~~v~~lViDEad~ml 283 (518)
T PLN00206 207 ELCVQVEDQAKV-LGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH--DIELDNVSVLVLDEVDCML 283 (518)
T ss_pred HHHHHHHHHHHH-HhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC--CccchheeEEEeecHHHHh
Confidence 999998887765 55544777766666543222 22346899999999998888763 4458899999999999875
Q ss_pred C-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccC-cEEEEeccCCccccc
Q 043190 822 A-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVP-LEVHIQGYPGKFYCP 898 (1492)
Q Consensus 822 ~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~-l~~~~~~~~~~~~~~ 898 (1492)
+ ++...+..++..+ +..|++++|||+++ .+.++.++..... .+......++.. +.........
T Consensus 284 ~~gf~~~i~~i~~~l--------~~~q~l~~SATl~~~v~~l~~~~~~~~~-~i~~~~~~~~~~~v~q~~~~~~~----- 349 (518)
T PLN00206 284 ERGFRDQVMQIFQAL--------SQPQVLLFSATVSPEVEKFASSLAKDII-LISIGNPNRPNKAVKQLAIWVET----- 349 (518)
T ss_pred hcchHHHHHHHHHhC--------CCCcEEEEEeeCCHHHHHHHHHhCCCCE-EEEeCCCCCCCcceeEEEEeccc-----
Confidence 4 3444443333322 35799999999987 4567776654432 222222222211 1111110000
Q ss_pred cccccChhHHHHHhhc-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccc
Q 043190 899 RMNSMNKPAYAAICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFG 977 (1492)
Q Consensus 899 ~~~~~~~~~~~~l~~~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 977 (1492)
......+...+... ....++||||+++..++.++..|... .+..
T Consensus 350 --~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~---------------------------------~g~~ 394 (518)
T PLN00206 350 --KQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV---------------------------------TGLK 394 (518)
T ss_pred --hhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc---------------------------------cCcc
Confidence 00011223333322 23468999999999999888766321 2456
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCC
Q 043190 978 IGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQY 1057 (1492)
Q Consensus 978 v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~ 1057 (1492)
+..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|+||+|||||.|
T Consensus 395 ~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----~d~------P~s~~~yihRiGRaGR~g- 463 (518)
T PLN00206 395 ALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII----FDM------PNTIKEYIHQIGRASRMG- 463 (518)
T ss_pred eEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE----eCC------CCCHHHHHHhccccccCC-
Confidence 889999999999999999999999999999999999999999999998 553 336899999999999988
Q ss_pred CCceEEEEEecCCcHHHHHHhh
Q 043190 1058 DQHGKAVILVHEPKKSFYKKFL 1079 (1492)
Q Consensus 1058 ~~~G~~i~l~~~~~~~~~~~~l 1079 (1492)
..|.+++|+++.+...+..+.
T Consensus 464 -~~G~ai~f~~~~~~~~~~~l~ 484 (518)
T PLN00206 464 -EKGTAIVFVNEEDRNLFPELV 484 (518)
T ss_pred -CCeEEEEEEchhHHHHHHHHH
Confidence 789999999887766555443
No 26
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=2.7e-40 Score=403.92 Aligned_cols=335 Identities=17% Similarity=0.229 Sum_probs=248.3
Q ss_pred chhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC-------CceEEEEcccHHHH
Q 043190 677 NNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS-------DMKVVYIAPLKAIV 747 (1492)
Q Consensus 677 ~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~-------~~~~l~i~P~r~La 747 (1492)
.+..+.+. ||..|+|+|.++++.++ .++|++++||||||||++|++|+++.+.... ..++||++||++||
T Consensus 10 ~~l~~~l~~~g~~~pt~iQ~~ai~~il-~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa 88 (456)
T PRK10590 10 PDILRAVAEQGYREPTPIQQQAIPAVL-EGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELA 88 (456)
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHH
Confidence 34444443 99999999999999998 7899999999999999999999999875421 24799999999999
Q ss_pred HHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-C
Q 043190 748 RERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E 823 (1492)
Q Consensus 748 ~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~ 823 (1492)
.|+++.+.... ...++++..++|+...+.. ...+++|+|+||++|..++... ...+++++++||||||++.+ .
T Consensus 89 ~Qi~~~~~~~~-~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~--~~~l~~v~~lViDEah~ll~~~ 165 (456)
T PRK10590 89 AQIGENVRDYS-KYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQN--AVKLDQVEILVLDEADRMLDMG 165 (456)
T ss_pred HHHHHHHHHHh-ccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcC--CcccccceEEEeecHHHHhccc
Confidence 99999988744 4448888888888765432 2346899999999998877653 33588999999999998754 3
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccc
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNS 902 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 902 (1492)
+...+..++. ..+...|++++|||+++ ..+++.++...+..+...........+...+.... ..
T Consensus 166 ~~~~i~~il~-------~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~--------~~ 230 (456)
T PRK10590 166 FIHDIRRVLA-------KLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVD--------KK 230 (456)
T ss_pred cHHHHHHHHH-------hCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcC--------HH
Confidence 3333333333 33457789999999987 46666665444432222111111111221111110 00
Q ss_pred cChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeec
Q 043190 903 MNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHH 982 (1492)
Q Consensus 903 ~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h 982 (1492)
........+.......++||||+++..++.++..|.. .++.+..+|
T Consensus 231 ~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~----------------------------------~g~~~~~lh 276 (456)
T PRK10590 231 RKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNK----------------------------------DGIRSAAIH 276 (456)
T ss_pred HHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHH----------------------------------CCCCEEEEE
Confidence 1112233334445567899999999999999877732 256788999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceE
Q 043190 983 AGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGK 1062 (1492)
Q Consensus 983 ~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~ 1062 (1492)
|++++++|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|+||+|||||.| ..|.
T Consensus 277 g~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~~------P~~~~~yvqR~GRaGR~g--~~G~ 344 (456)
T PRK10590 277 GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVN----YEL------PNVPEDYVHRIGRTGRAA--ATGE 344 (456)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE----eCC------CCCHHHhhhhccccccCC--CCee
Confidence 9999999999999999999999999999999999999999998 543 235789999999999988 7899
Q ss_pred EEEEecCCcHHHHH
Q 043190 1063 AVILVHEPKKSFYK 1076 (1492)
Q Consensus 1063 ~i~l~~~~~~~~~~ 1076 (1492)
+++++...+...+.
T Consensus 345 ai~l~~~~d~~~~~ 358 (456)
T PRK10590 345 ALSLVCVDEHKLLR 358 (456)
T ss_pred EEEEecHHHHHHHH
Confidence 99999877655443
No 27
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.3e-40 Score=411.52 Aligned_cols=340 Identities=18% Similarity=0.203 Sum_probs=247.5
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC------CCceEEEEcccHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ------SDMKVVYIAPLKAI 746 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~------~~~~~l~i~P~r~L 746 (1492)
++..+.+.+. ||..|+|+|.++++.++ +++|+|++||||||||++|++|++..+... .++.+||++|||+|
T Consensus 137 l~~~l~~~l~~~g~~~pt~iQ~~aip~~l-~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreL 215 (545)
T PTZ00110 137 FPDYILKSLKNAGFTEPTPIQVQGWPIAL-SGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTREL 215 (545)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHH
Confidence 3444555554 99999999999999998 789999999999999999999998876532 35789999999999
Q ss_pred HHHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-
Q 043190 747 VRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA- 822 (1492)
Q Consensus 747 a~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~- 822 (1492)
|.|+.+.+.+ |....++++..+.|+...... ....++|+|+||++|..++.+. ...++++++|||||||++.+
T Consensus 216 a~Qi~~~~~~-~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~--~~~l~~v~~lViDEAd~mld~ 292 (545)
T PTZ00110 216 AEQIREQCNK-FGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN--VTNLRRVTYLVLDEADRMLDM 292 (545)
T ss_pred HHHHHHHHHH-HhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC--CCChhhCcEEEeehHHhhhhc
Confidence 9999998877 555557888888887654321 2346899999999998888763 34588999999999998754
Q ss_pred CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCc-c-ccCcEEEEeccCCcccccc
Q 043190 823 ERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSV-R-PVPLEVHIQGYPGKFYCPR 899 (1492)
Q Consensus 823 ~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~-r-~~~l~~~~~~~~~~~~~~~ 899 (1492)
.+.+.+..++.. .....|++++|||++. ...++.++.......+...... . ...+...+.... .
T Consensus 293 gf~~~i~~il~~-------~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~------~ 359 (545)
T PTZ00110 293 GFEPQIRKIVSQ-------IRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVE------E 359 (545)
T ss_pred chHHHHHHHHHh-------CCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEe------c
Confidence 444444444433 3457899999999976 3455555432211111111100 0 001111111000 0
Q ss_pred ccccChhHHHHHhhcC-CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccce
Q 043190 900 MNSMNKPAYAAICTHS-PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGI 978 (1492)
Q Consensus 900 ~~~~~~~~~~~l~~~~-~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 978 (1492)
......+...+.... .++++||||++++.|+.++..|.. .++.+
T Consensus 360 -~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~----------------------------------~g~~~ 404 (545)
T PTZ00110 360 -HEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRL----------------------------------DGWPA 404 (545)
T ss_pred -hhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHH----------------------------------cCCcE
Confidence 000011222222222 577999999999999999887732 24567
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCC
Q 043190 979 GLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD 1058 (1492)
Q Consensus 979 ~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~ 1058 (1492)
..+||++++++|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|+||+||+||.|
T Consensus 405 ~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d~------P~s~~~yvqRiGRtGR~G-- 472 (545)
T PTZ00110 405 LCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----FDF------PNQIEDYVHRIGRTGRAG-- 472 (545)
T ss_pred EEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE----eCC------CCCHHHHHHHhcccccCC--
Confidence 89999999999999999999999999999999999999999999998 553 335899999999999988
Q ss_pred CceEEEEEecCCcHHHHHHh
Q 043190 1059 QHGKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1059 ~~G~~i~l~~~~~~~~~~~~ 1078 (1492)
..|.|+.|+++.+......+
T Consensus 473 ~~G~ai~~~~~~~~~~~~~l 492 (545)
T PTZ00110 473 AKGASYTFLTPDKYRLARDL 492 (545)
T ss_pred CCceEEEEECcchHHHHHHH
Confidence 89999999998776544433
No 28
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.3e-40 Score=366.52 Aligned_cols=376 Identities=19% Similarity=0.280 Sum_probs=279.9
Q ss_pred CcccccceeEEecccccccCCCCCCCcccCCCCCccccccCchhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCC
Q 043190 636 DSWLHAEAFYCISFHNLALPQARTSHTELLDLKPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGS 715 (1492)
Q Consensus 636 d~wl~~~~~~~i~~~~~~~p~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGs 715 (1492)
-.|-.....+.+++.+..+|.+-..+.+. ++|...|. .+... ||..|+|+|+++++..+ .++|+|..|.|||
T Consensus 222 rdwri~redynis~kg~~lpnplrnwEE~----~~P~e~l~--~I~~~-~y~eptpIqR~aipl~l-Q~rD~igvaETgs 293 (673)
T KOG0333|consen 222 RDWRIFREDYNISIKGGRLPNPLRNWEES----GFPLELLS--VIKKP-GYKEPTPIQRQAIPLGL-QNRDPIGVAETGS 293 (673)
T ss_pred ccceeeecceeeeecCCCCCccccChhhc----CCCHHHHH--HHHhc-CCCCCchHHHhhccchh-ccCCeeeEEeccC
Confidence 35666666777888888888665444331 23333331 22222 99999999999999887 7899999999999
Q ss_pred CchHHHHHHHHHHhccC----------CCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCC
Q 043190 716 GKTISAELAMLHLFNTQ----------SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLS 782 (1492)
Q Consensus 716 GKT~~~~l~il~~l~~~----------~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~ 782 (1492)
|||.+|++|++..+... .++.+++++|||+||.|+.++-.+ |.+.+|.++..+.|+...+.+ ...+
T Consensus 294 Gktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~k-f~~~lg~r~vsvigg~s~EEq~fqls~g 372 (673)
T KOG0333|consen 294 GKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNK-FGKPLGIRTVSVIGGLSFEEQGFQLSMG 372 (673)
T ss_pred CccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHH-hcccccceEEEEecccchhhhhhhhhcc
Confidence 99999999999866432 478999999999999999988766 777779999999998776554 3458
Q ss_pred CcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-CCCccHHHHHHHHHHHhhhc------------------cC
Q 043190 783 ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVSRMRYISSQ------------------TE 843 (1492)
Q Consensus 783 ~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~~~g~~~~~i~~~l~~~~~~------------------~~ 843 (1492)
|+|+|+||++|++.+.+. ...++++.++|+|||+.+. .++.+.+..++..|...... ..
T Consensus 373 ceiviatPgrLid~Lenr--~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k 450 (673)
T KOG0333|consen 373 CEIVIATPGRLIDSLENR--YLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSK 450 (673)
T ss_pred ceeeecCchHHHHHHHHH--HHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhccccc
Confidence 999999999998777763 3448899999999999764 47888999888877532211 01
Q ss_pred CceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcE-EEEeccCCccccccccccChhHHHHHhhcCCCCCee
Q 043190 844 RAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLE-VHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVL 921 (1492)
Q Consensus 844 ~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 921 (1492)
.-.+.+.+|||++. .+.++.-.-..+ .+.......++.+.. ..+..... ....+.+.. +.......++|
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr~p-v~vtig~~gk~~~rveQ~v~m~~e-------d~k~kkL~e-il~~~~~ppiI 521 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLRRP-VVVTIGSAGKPTPRVEQKVEMVSE-------DEKRKKLIE-ILESNFDPPII 521 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhhCC-eEEEeccCCCCccchheEEEEecc-------hHHHHHHHH-HHHhCCCCCEE
Confidence 12789999999987 455554332222 223333444444432 22111111 111122333 33334678999
Q ss_pred EEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCC
Q 043190 922 IFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNK 1001 (1492)
Q Consensus 922 IF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 1001 (1492)
||+|+++.|+.+|..|. ..++.+..+||+-++++|+.+++.|++|.
T Consensus 522 IFvN~kk~~d~lAk~Le----------------------------------K~g~~~~tlHg~k~qeQRe~aL~~fr~~t 567 (673)
T KOG0333|consen 522 IFVNTKKGADALAKILE----------------------------------KAGYKVTTLHGGKSQEQRENALADFREGT 567 (673)
T ss_pred EEEechhhHHHHHHHHh----------------------------------hccceEEEeeCCccHHHHHHHHHHHHhcC
Confidence 99999999999998873 34788999999999999999999999999
Q ss_pred ceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHH
Q 043190 1002 IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKK 1077 (1492)
Q Consensus 1002 ~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~ 1077 (1492)
.+|||||+++++|||+|+|.+||+ || +.-++.+|.||+||+||+| +.|+++.|++..+...|..
T Consensus 568 ~dIlVaTDvAgRGIDIpnVSlVin----yd------maksieDYtHRIGRTgRAG--k~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 568 GDILVATDVAGRGIDIPNVSLVIN----YD------MAKSIEDYTHRIGRTGRAG--KSGTAISFLTPADTAVFYD 631 (673)
T ss_pred CCEEEEecccccCCCCCccceeee----cc------hhhhHHHHHHHhccccccc--cCceeEEEeccchhHHHHH
Confidence 999999999999999999999998 33 2224889999999999999 9999999999988665443
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=4.6e-40 Score=404.54 Aligned_cols=326 Identities=18% Similarity=0.259 Sum_probs=246.6
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC-CceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS-DMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~-~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
||..|+|+|.++++.++ .++|++++||||||||++|.+|+++.+.... ..+++|++||++||.|+++.++.......+
T Consensus 23 g~~~~t~iQ~~ai~~~l-~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 23 GYTEMTPIQAQSLPAIL-AGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCCCCHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 89999999999999998 7899999999999999999999999886432 458999999999999999998875443447
Q ss_pred CEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhh
Q 043190 764 KEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYIS 839 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~ 839 (1492)
.++..++|+...+.+ ...+++|+|+||++|..++++. ...+++++++|+||||++.+ .+...++.++..
T Consensus 102 ~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~--~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~----- 174 (460)
T PRK11776 102 IKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG--TLDLDALNTLVLDEADRMLDMGFQDAIDAIIRQ----- 174 (460)
T ss_pred cEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC--CccHHHCCEEEEECHHHHhCcCcHHHHHHHHHh-----
Confidence 889899998765322 2347899999999998888763 34488999999999997754 444455544443
Q ss_pred hccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCC
Q 043190 840 SQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTK 918 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 918 (1492)
.+...|++++|||+++ ...++..+...+..+ ..........+...+...+. .........+......+
T Consensus 175 --~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i-~~~~~~~~~~i~~~~~~~~~--------~~k~~~l~~ll~~~~~~ 243 (460)
T PRK11776 175 --APARRQTLLFSATYPEGIAAISQRFQRDPVEV-KVESTHDLPAIEQRFYEVSP--------DERLPALQRLLLHHQPE 243 (460)
T ss_pred --CCcccEEEEEEecCcHHHHHHHHHhcCCCEEE-EECcCCCCCCeeEEEEEeCc--------HHHHHHHHHHHHhcCCC
Confidence 3457899999999976 344454443322222 22222222222222221111 01112233333445567
Q ss_pred CeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHh
Q 043190 919 PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFA 998 (1492)
Q Consensus 919 ~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 998 (1492)
++||||++++.++.++..|.+. +..+..+||+|++.+|..+++.|+
T Consensus 244 ~~lVF~~t~~~~~~l~~~L~~~----------------------------------~~~v~~~hg~~~~~eR~~~l~~F~ 289 (460)
T PRK11776 244 SCVVFCNTKKECQEVADALNAQ----------------------------------GFSALALHGDLEQRDRDQVLVRFA 289 (460)
T ss_pred ceEEEECCHHHHHHHHHHHHhC----------------------------------CCcEEEEeCCCCHHHHHHHHHHHH
Confidence 8999999999999999888432 567899999999999999999999
Q ss_pred cCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHH
Q 043190 999 NNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFY 1075 (1492)
Q Consensus 999 ~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~ 1075 (1492)
+|+++|||||+++++|+|+|++++||+ |+ .+.+..+|+||+||+||.| ..|.|+.++.+.+...+
T Consensus 290 ~g~~~vLVaTdv~~rGiDi~~v~~VI~----~d------~p~~~~~yiqR~GRtGR~g--~~G~ai~l~~~~e~~~~ 354 (460)
T PRK11776 290 NRSCSVLVATDVAARGLDIKALEAVIN----YE------LARDPEVHVHRIGRTGRAG--SKGLALSLVAPEEMQRA 354 (460)
T ss_pred cCCCcEEEEecccccccchhcCCeEEE----ec------CCCCHhHhhhhcccccCCC--CcceEEEEEchhHHHHH
Confidence 999999999999999999999999998 44 2335889999999999988 78999999988765543
No 30
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.2e-40 Score=401.37 Aligned_cols=337 Identities=19% Similarity=0.244 Sum_probs=243.7
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--------CCceEEEEcccH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--------SDMKVVYIAPLK 744 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--------~~~~~l~i~P~r 744 (1492)
|+....+.+. ||..|+|+|.++++.++ +|+|++++||||||||++|++|+++.+... .+.+++|++||+
T Consensus 15 l~~~l~~~l~~~g~~~pt~iQ~~aip~il-~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~Ptr 93 (423)
T PRK04837 15 LHPQVVEALEKKGFHNCTPIQALALPLTL-AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTR 93 (423)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcH
Confidence 4444555543 99999999999999998 789999999999999999999999877532 246899999999
Q ss_pred HHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC
Q 043190 745 AIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG 821 (1492)
Q Consensus 745 ~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~ 821 (1492)
+||.|+++.+.. +....|+++..+.|+...+.. ...+++|+|+||+++..++++ ....+++++++||||||++.
T Consensus 94 eLa~Qi~~~~~~-l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--~~~~l~~v~~lViDEad~l~ 170 (423)
T PRK04837 94 ELAVQIHADAEP-LAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ--NHINLGAIQVVVLDEADRMF 170 (423)
T ss_pred HHHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcccccccEEEEecHHHHh
Confidence 999999998877 444458999888887553321 123679999999999888775 33457899999999999875
Q ss_pred C-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHH-HHhcCCcceeEecCCCcc-ccCcEEEEeccCCcccc
Q 043190 822 A-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLA-DWLGVGEIGLFNFKPSVR-PVPLEVHIQGYPGKFYC 897 (1492)
Q Consensus 822 ~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~-~~l~~~~~~~~~~~~~~r-~~~l~~~~~~~~~~~~~ 897 (1492)
+ .+...++.++..+. .....+.+++|||++.. ..+. .++..+ ..+...+... ...+..... +.
T Consensus 171 ~~~f~~~i~~i~~~~~-----~~~~~~~~l~SAT~~~~~~~~~~~~~~~p--~~i~v~~~~~~~~~i~~~~~------~~ 237 (423)
T PRK04837 171 DLGFIKDIRWLFRRMP-----PANQRLNMLFSATLSYRVRELAFEHMNNP--EYVEVEPEQKTGHRIKEELF------YP 237 (423)
T ss_pred hcccHHHHHHHHHhCC-----CccceeEEEEeccCCHHHHHHHHHHCCCC--EEEEEcCCCcCCCceeEEEE------eC
Confidence 4 44444444444331 11345678999999763 2222 233221 1121111111 111111110 00
Q ss_pred ccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccc
Q 043190 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFG 977 (1492)
Q Consensus 898 ~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 977 (1492)
.. . ........+.......++||||+++..|+.++..|.. .+..
T Consensus 238 ~~-~-~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~----------------------------------~g~~ 281 (423)
T PRK04837 238 SN-E-EKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAA----------------------------------DGHR 281 (423)
T ss_pred CH-H-HHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHh----------------------------------CCCc
Confidence 00 0 0111222233334567899999999999999887732 2567
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCC
Q 043190 978 IGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQY 1057 (1492)
Q Consensus 978 v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~ 1057 (1492)
+.++||++++++|..+++.|++|+++|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.|
T Consensus 282 v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~------P~s~~~yiqR~GR~gR~G- 350 (423)
T PRK04837 282 VGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN----YDL------PDDCEDYVHRIGRTGRAG- 350 (423)
T ss_pred EEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE----eCC------CCchhheEeccccccCCC-
Confidence 999999999999999999999999999999999999999999999998 553 335889999999999998
Q ss_pred CCceEEEEEecCCcHHHHH
Q 043190 1058 DQHGKAVILVHEPKKSFYK 1076 (1492)
Q Consensus 1058 ~~~G~~i~l~~~~~~~~~~ 1076 (1492)
..|.|+.|+.+.+...+.
T Consensus 351 -~~G~ai~~~~~~~~~~~~ 368 (423)
T PRK04837 351 -ASGHSISLACEEYALNLP 368 (423)
T ss_pred -CCeeEEEEeCHHHHHHHH
Confidence 889999999887654443
No 31
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-40 Score=401.81 Aligned_cols=336 Identities=21% Similarity=0.280 Sum_probs=252.7
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc--CCCce-EEEEcccHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT--QSDMK-VVYIAPLKAIVRE 749 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~--~~~~~-~l~i~P~r~La~q 749 (1492)
+....++++. ||..|+|+|.+++|.++ .|+|+++.|+||||||.+|.+|+++.+.. ..... +|+++|||+||.|
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l-~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Q 114 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLIL-AGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQ 114 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHH
Confidence 3445555555 99999999999999999 77999999999999999999999999873 22223 9999999999999
Q ss_pred HHHHHHHHhhhcc-CCEEEEEcCCCCcchh--ccC-CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CC
Q 043190 750 RMNDWKDRLVSQL-GKEMVEMTGDYTPDLM--ALL-SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER 824 (1492)
Q Consensus 750 ~~~~~~~~~~~~~-g~~v~~~~g~~~~~~~--~~~-~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~ 824 (1492)
+++.+.. +.... ++++..+.|+.+...+ .+. +++|+|+||+++.+++.+. ...++++.++|+||||.|.+ ++
T Consensus 115 i~~~~~~-~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~--~l~l~~v~~lVlDEADrmLd~Gf 191 (513)
T COG0513 115 IAEELRK-LGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG--KLDLSGVETLVLDEADRMLDMGF 191 (513)
T ss_pred HHHHHHH-HHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC--CcchhhcCEEEeccHhhhhcCCC
Confidence 9999887 66655 6888899998764432 222 5899999999999998874 55689999999999997754 56
Q ss_pred ccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHHHhcCCcceeEecCCCc---cccCcEEEEeccCCccccccc
Q 043190 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLADWLGVGEIGLFNFKPSV---RPVPLEVHIQGYPGKFYCPRM 900 (1492)
Q Consensus 825 g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~~~~~~~---r~~~l~~~~~~~~~~~~~~~~ 900 (1492)
...++.++..+ +.+.|++++|||++.. ..++.-+-.++. ........ ....+...+.....
T Consensus 192 ~~~i~~I~~~~-------p~~~qtllfSAT~~~~i~~l~~~~l~~p~-~i~v~~~~~~~~~~~i~q~~~~v~~------- 256 (513)
T COG0513 192 IDDIEKILKAL-------PPDRQTLLFSATMPDDIRELARRYLNDPV-EIEVSVEKLERTLKKIKQFYLEVES------- 256 (513)
T ss_pred HHHHHHHHHhC-------CcccEEEEEecCCCHHHHHHHHHHccCCc-EEEEccccccccccCceEEEEEeCC-------
Confidence 66666666544 4479999999999872 223222222222 11111111 11122222111110
Q ss_pred cccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEe
Q 043190 901 NSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGL 980 (1492)
Q Consensus 901 ~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~ 980 (1492)
...+......+.......++||||+|+..+..++..|.. .++.+..
T Consensus 257 ~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~----------------------------------~g~~~~~ 302 (513)
T COG0513 257 EEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRK----------------------------------RGFKVAA 302 (513)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHH----------------------------------CCCeEEE
Confidence 011223344444445556799999999999998877733 3678999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCc
Q 043190 981 HHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQH 1060 (1492)
Q Consensus 981 ~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~ 1060 (1492)
+||+|++++|..+++.|++|+.+|||||++++||+|+|++.+||+ ||.+ .+..+|+||+||+||+| ..
T Consensus 303 lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~p------~~~e~yvHRiGRTgRaG--~~ 370 (513)
T COG0513 303 LHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDLP------LDPEDYVHRIGRTGRAG--RK 370 (513)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE----ccCC------CCHHHheeccCccccCC--CC
Confidence 999999999999999999999999999999999999999999998 5533 35899999999999998 99
Q ss_pred eEEEEEecCC-cHHHH
Q 043190 1061 GKAVILVHEP-KKSFY 1075 (1492)
Q Consensus 1061 G~~i~l~~~~-~~~~~ 1075 (1492)
|.++.|+.+. +...+
T Consensus 371 G~ai~fv~~~~e~~~l 386 (513)
T COG0513 371 GVAISFVTEEEEVKKL 386 (513)
T ss_pred CeEEEEeCcHHHHHHH
Confidence 9999999875 44443
No 32
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.9e-40 Score=405.49 Aligned_cols=336 Identities=18% Similarity=0.256 Sum_probs=246.1
Q ss_pred CchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--------CCceEEEEcccHH
Q 043190 676 GNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--------SDMKVVYIAPLKA 745 (1492)
Q Consensus 676 ~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--------~~~~~l~i~P~r~ 745 (1492)
...+.+.+. ||..|+|+|.++|+.++ .++|++++||||||||++|++|+++.+... ...++||++||++
T Consensus 17 ~~~l~~~L~~~g~~~ptpiQ~~~ip~~l-~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTre 95 (572)
T PRK04537 17 HPALLAGLESAGFTRCTPIQALTLPVAL-PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRE 95 (572)
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHH
Confidence 334444443 99999999999999998 789999999999999999999999977432 1468999999999
Q ss_pred HHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC
Q 043190 746 IVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA 822 (1492)
Q Consensus 746 La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~ 822 (1492)
||.|+++.+.. +....++++..++|+...+.. ...+++|+|+||++|..++++.. ...++.+++|||||||++.+
T Consensus 96 La~Qi~~~~~~-l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~-~~~l~~v~~lViDEAh~lld 173 (572)
T PRK04537 96 LAIQIHKDAVK-FGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHK-VVSLHACEICVLDEADRMFD 173 (572)
T ss_pred HHHHHHHHHHH-HhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcc-ccchhheeeeEecCHHHHhh
Confidence 99999999877 445558999999998765432 22367999999999988776532 23477899999999998754
Q ss_pred -CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HH-HHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccc
Q 043190 823 -ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GD-LADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPR 899 (1492)
Q Consensus 823 -~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~-~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~ 899 (1492)
.+...++.++.++.. ....|++++|||+++. .. ...++... ..+...........+...+.. ..
T Consensus 174 ~gf~~~i~~il~~lp~-----~~~~q~ll~SATl~~~v~~l~~~~l~~p-~~i~v~~~~~~~~~i~q~~~~-------~~ 240 (572)
T PRK04537 174 LGFIKDIRFLLRRMPE-----RGTRQTLLFSATLSHRVLELAYEHMNEP-EKLVVETETITAARVRQRIYF-------PA 240 (572)
T ss_pred cchHHHHHHHHHhccc-----ccCceEEEEeCCccHHHHHHHHHHhcCC-cEEEeccccccccceeEEEEe-------cC
Confidence 455555555544421 1257899999999762 22 23333222 112111111111111111110 00
Q ss_pred ccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceE
Q 043190 900 MNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIG 979 (1492)
Q Consensus 900 ~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 979 (1492)
...+...+..+.....+.++||||+|+..|+.++..|.+ .++.+.
T Consensus 241 -~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~----------------------------------~g~~v~ 285 (572)
T PRK04537 241 -DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLER----------------------------------HGYRVG 285 (572)
T ss_pred -HHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHH----------------------------------cCCCEE
Confidence 011112223333445678999999999999999987743 256799
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCC
Q 043190 980 LHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQ 1059 (1492)
Q Consensus 980 ~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~ 1059 (1492)
.+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ |+ .+.+..+|+||+||+||.| .
T Consensus 286 ~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn----yd------~P~s~~~yvqRiGRaGR~G--~ 353 (572)
T PRK04537 286 VLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN----YD------LPFDAEDYVHRIGRTARLG--E 353 (572)
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE----cC------CCCCHHHHhhhhcccccCC--C
Confidence 9999999999999999999999999999999999999999999998 54 3446899999999999988 7
Q ss_pred ceEEEEEecCCcHHH
Q 043190 1060 HGKAVILVHEPKKSF 1074 (1492)
Q Consensus 1060 ~G~~i~l~~~~~~~~ 1074 (1492)
.|.|++|+.+.+...
T Consensus 354 ~G~ai~~~~~~~~~~ 368 (572)
T PRK04537 354 EGDAISFACERYAMS 368 (572)
T ss_pred CceEEEEecHHHHHH
Confidence 899999998765443
No 33
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.9e-40 Score=349.55 Aligned_cols=344 Identities=17% Similarity=0.252 Sum_probs=257.1
Q ss_pred cccCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCC-ceEEEEcccHHHHHH
Q 043190 673 TALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSD-MKVVYIAPLKAIVRE 749 (1492)
Q Consensus 673 ~~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~-~~~l~i~P~r~La~q 749 (1492)
-.|..|..+.+- |+..|+|+|..|+|.++ .|+|+|.+|.||||||.+|.+|+++.+..++. .-+++++|||+||.|
T Consensus 12 LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkIL-eGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~Q 90 (442)
T KOG0340|consen 12 LGLSPWLVEQLKALGIKKPTPIQQACIPKIL-EGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQ 90 (442)
T ss_pred cCccHHHHHHHHHhcCCCCCchHhhhhHHHh-cccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHH
Confidence 344455555554 99999999999999999 89999999999999999999999999988754 568999999999999
Q ss_pred HHHHHHHHhhhccCCEEEEEcCCCCc---chhccCCCcEEEECchhhhHhhhcccC--ccccCcccEEEEecccccCC-C
Q 043190 750 RMNDWKDRLVSQLGKEMVEMTGDYTP---DLMALLSADIIISTPEKWDGISRNWHS--RNYVKKVGLMILDEIHLLGA-E 823 (1492)
Q Consensus 750 ~~~~~~~~~~~~~g~~v~~~~g~~~~---~~~~~~~~~Iiv~Tpe~l~~l~~~~~~--~~~l~~i~liViDEaH~l~~-~ 823 (1492)
+.+.|.. +++.+++++..+.|+.+. +.....++|++|+|||++..+++.... ...+++++++|+|||+.+.+ .
T Consensus 91 iaEQF~a-lGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~~ 169 (442)
T KOG0340|consen 91 IAEQFIA-LGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAGC 169 (442)
T ss_pred HHHHHHH-hcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhccc
Confidence 9999986 777779999999997653 333445889999999999888876432 34578999999999997754 4
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcce--eEecCCCccccCcEEEEeccCCcccccccc
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIG--LFNFKPSVRPVPLEVHIQGYPGKFYCPRMN 901 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~--~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~ 901 (1492)
+...++.+.+- .+.+.|.+++|||+.+ .+...+++.... .+.+. ....++.... ....+......
T Consensus 170 f~d~L~~i~e~-------lP~~RQtLlfSATitd--~i~ql~~~~i~k~~a~~~e-~~~~vstvet---L~q~yI~~~~~ 236 (442)
T KOG0340|consen 170 FPDILEGIEEC-------LPKPRQTLLFSATITD--TIKQLFGCPITKSIAFELE-VIDGVSTVET---LYQGYILVSID 236 (442)
T ss_pred hhhHHhhhhcc-------CCCccceEEEEeehhh--HHHHhhcCCcccccceEEe-ccCCCCchhh---hhhheeecchh
Confidence 55555555443 3556799999999965 344444443221 11111 0011110000 00011111111
Q ss_pred ccChhHHHHHhhcC--CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceE
Q 043190 902 SMNKPAYAAICTHS--PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIG 979 (1492)
Q Consensus 902 ~~~~~~~~~l~~~~--~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 979 (1492)
..+..++..+.... +.+.++||+++..+|+.++..| +.+...+.
T Consensus 237 vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l----------------------------------~~le~r~~ 282 (442)
T KOG0340|consen 237 VKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTL----------------------------------KNLEVRVV 282 (442)
T ss_pred hhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHH----------------------------------hhhceeee
Confidence 11223344444443 4789999999999999998777 33478899
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCC
Q 043190 980 LHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQ 1059 (1492)
Q Consensus 980 ~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~ 1059 (1492)
.+||.|++.+|...+..|+++.++|||||+++++|+|||.+.+||+ || .+-.+.+|+||+||+.|+| +
T Consensus 283 ~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN----~d------iPr~P~~yiHRvGRtARAG--R 350 (442)
T KOG0340|consen 283 SLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN----HD------IPRDPKDYIHRVGRTARAG--R 350 (442)
T ss_pred ehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe----cC------CCCCHHHHHHhhcchhccc--C
Confidence 9999999999999999999999999999999999999999999998 33 2223889999999999998 8
Q ss_pred ceEEEEEecCCcHHHHHH
Q 043190 1060 HGKAVILVHEPKKSFYKK 1077 (1492)
Q Consensus 1060 ~G~~i~l~~~~~~~~~~~ 1077 (1492)
.|.++.++++.+.+.+..
T Consensus 351 ~G~aiSivt~rDv~l~~a 368 (442)
T KOG0340|consen 351 KGMAISIVTQRDVELLQA 368 (442)
T ss_pred CcceEEEechhhHHHHHH
Confidence 999999999877665543
No 34
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.2e-40 Score=358.09 Aligned_cols=344 Identities=20% Similarity=0.283 Sum_probs=256.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC----CC--ceEEEEcccHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ----SD--MKVVYIAPLKAI 746 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~----~~--~~~l~i~P~r~L 746 (1492)
|..++.+.+- ||..+||+|..++|.++ +++++++.|+||||||++|++|+++.+.+. +. ..++||+|||+|
T Consensus 13 L~~~l~~~l~~~GF~~mTpVQa~tIPlll-~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTREL 91 (567)
T KOG0345|consen 13 LSPWLLEALDESGFEKMTPVQAATIPLLL-KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTREL 91 (567)
T ss_pred ccHHHHHHHHhcCCcccCHHHHhhhHHHh-cCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHH
Confidence 3345554443 99999999999999998 889999999999999999999999988322 22 368999999999
Q ss_pred HHHHHHHHHHHhhhccCCEEEEEcCCCCcchh----ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC
Q 043190 747 VRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM----ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA 822 (1492)
Q Consensus 747 a~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~----~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~ 822 (1492)
|.|+.+.....+....++++..+.|+.+.+.. ...+++|+|+|||+|..++++......++++.++|+||||.+.+
T Consensus 92 a~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 92 ARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhc
Confidence 99999988887777668889999998654332 23478999999999999998855554567999999999998765
Q ss_pred -CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCC-Cc--cccCcEEEEeccCCcccc
Q 043190 823 -ERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKP-SV--RPVPLEVHIQGYPGKFYC 897 (1492)
Q Consensus 823 -~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~-~~--r~~~l~~~~~~~~~~~~~ 897 (1492)
++...++.|++++ ++..|.=++|||... .+++... |......+.... .. .|-.+... |.
T Consensus 172 mgFe~~~n~ILs~L-------PKQRRTGLFSATq~~~v~dL~ra-GLRNpv~V~V~~k~~~~tPS~L~~~--------Y~ 235 (567)
T KOG0345|consen 172 MGFEASVNTILSFL-------PKQRRTGLFSATQTQEVEDLARA-GLRNPVRVSVKEKSKSATPSSLALE--------YL 235 (567)
T ss_pred ccHHHHHHHHHHhc-------ccccccccccchhhHHHHHHHHh-hccCceeeeecccccccCchhhcce--------ee
Confidence 6777777777766 457778899999765 3344332 222211111111 10 11112111 11
Q ss_pred ccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccc
Q 043190 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFG 977 (1492)
Q Consensus 898 ~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 977 (1492)
......+......+......+++|||.+|...++..+..+.... ....
T Consensus 236 v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l--------------------------------~~~~ 283 (567)
T KOG0345|consen 236 VCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL--------------------------------KKRE 283 (567)
T ss_pred EecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHh--------------------------------CCCc
Confidence 11111111222233334567899999999999988887664331 2467
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCC
Q 043190 978 IGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQY 1057 (1492)
Q Consensus 978 v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~ 1057 (1492)
+..+||.|++..|..+++.|++..-.+|+||++++||+|+|++++||+ ||++. ..+.++||+||+||.|
T Consensus 284 i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ----~DpP~------~~~~FvHR~GRTaR~g- 352 (567)
T KOG0345|consen 284 IFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ----FDPPK------DPSSFVHRCGRTARAG- 352 (567)
T ss_pred EEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEe----cCCCC------ChhHHHhhcchhhhcc-
Confidence 889999999999999999999988899999999999999999999998 77664 3789999999999998
Q ss_pred CCceEEEEEecCCcHHHHHHhhc
Q 043190 1058 DQHGKAVILVHEPKKSFYKKFLY 1080 (1492)
Q Consensus 1058 ~~~G~~i~l~~~~~~~~~~~~l~ 1080 (1492)
+.|.+++|..+ ....|..|+.
T Consensus 353 -r~G~Aivfl~p-~E~aYveFl~ 373 (567)
T KOG0345|consen 353 -REGNAIVFLNP-REEAYVEFLR 373 (567)
T ss_pred -CccceEEEecc-cHHHHHHHHH
Confidence 99999999998 4455666664
No 35
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.7e-39 Score=419.39 Aligned_cols=395 Identities=20% Similarity=0.267 Sum_probs=272.0
Q ss_pred EecCCCCCchHHHHHHHHHHhccC-----------CCceEEEEcccHHHHHHHHHHHHHHhh-----------hccCCEE
Q 043190 709 LGAPTGSGKTISAELAMLHLFNTQ-----------SDMKVVYIAPLKAIVRERMNDWKDRLV-----------SQLGKEM 766 (1492)
Q Consensus 709 i~apTGsGKT~~~~l~il~~l~~~-----------~~~~~l~i~P~r~La~q~~~~~~~~~~-----------~~~g~~v 766 (1492)
|+||||||||++|.+|++..+... ++.++|||+|+|+|+.|++++++..+. ...+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 589999999999999999877532 257899999999999999998865221 1247899
Q ss_pred EEEcCCCCcchhc---cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhcc
Q 043190 767 VEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 767 ~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~ 842 (1492)
...+||+..+.+. ...++|+|+|||+|..++.+. ....++++++|||||+|.+.+ +||..++..+.|+..+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk-~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~--- 156 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSR-ARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL--- 156 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhh-hhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC---
Confidence 9999999876542 246899999999998887642 345689999999999998864 69999999999998764
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCCcc-eeEecCCCccccCcEEEEeccCCccccc------------cccccChhHH-
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVGEI-GLFNFKPSVRPVPLEVHIQGYPGKFYCP------------RMNSMNKPAY- 908 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~~~-~~~~~~~~~r~~~l~~~~~~~~~~~~~~------------~~~~~~~~~~- 908 (1492)
+.+.|+|++|||++|.+++++|++.... .++. .+..++.++.+.+.......... ....+.....
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv~-~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVVN-PPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEEC-CCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHH
Confidence 4578999999999999999999987533 3433 44555556554332111100000 0011111111
Q ss_pred HHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHH---HhccceEeecCCC
Q 043190 909 AAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQ---TLQFGIGLHHAGL 985 (1492)
Q Consensus 909 ~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~v~~~h~~l 985 (1492)
..+......+++|||||||+.|+.++..|.+.......... .............+..... .....+.+|||+|
T Consensus 236 ~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsL 311 (1490)
T PRK09751 236 GILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSP----SIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSV 311 (1490)
T ss_pred HHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccc----cccchhhhhhhccccchhccccccceeeeeccccC
Confidence 12222234678999999999999999999765321100000 0000000000011111111 1123478999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
++++|..+++.|++|++++||||+++++|||++++++||+ |+ .+.++++|+||+|||||. .+..+.+++
T Consensus 312 SkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq----~g------sP~sVas~LQRiGRAGR~-~gg~s~gli 380 (1490)
T PRK09751 312 SKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ----VA------TPLSVASGLQRIGRAGHQ-VGGVSKGLF 380 (1490)
T ss_pred CHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE----eC------CCCCHHHHHHHhCCCCCC-CCCccEEEE
Confidence 9999999999999999999999999999999999999998 44 345799999999999996 345667775
Q ss_pred EecCCcHHH------HHHhhcCC-Cc--eeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeec
Q 043190 1066 LVHEPKKSF------YKKFLYEP-FP--VESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRL 1125 (1492)
Q Consensus 1066 l~~~~~~~~------~~~~l~~~-~p--ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl 1125 (1492)
+..+ ..+. .+.++... ++ +..+-.+.|..|+.+.++.+.+ +.++..+.+..+|.|+.+
T Consensus 381 ~p~~-r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~-~~d~l~~~vrra~pf~~L 447 (1490)
T PRK09751 381 FPRT-RRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDAL-QVDEWYSRVRRAAPWKDL 447 (1490)
T ss_pred EeCc-HHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCC-CHHHHHHHhhccCCcccC
Confidence 5443 2222 22333221 12 2222334688899988886544 478888888888887654
No 36
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.7e-39 Score=394.40 Aligned_cols=328 Identities=19% Similarity=0.229 Sum_probs=248.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-----CCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-----SDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-----~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
||..|+++|.++++.++ .++|++++||||+|||++|++|+++.+... +..+++|++||++||.|+++.+.. +.
T Consensus 20 g~~~p~~iQ~~ai~~~~-~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~-l~ 97 (434)
T PRK11192 20 GYTRPTAIQAEAIPPAL-DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARE-LA 97 (434)
T ss_pred CCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHH-HH
Confidence 99999999999999999 788999999999999999999999887532 246899999999999999998877 44
Q ss_pred hccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHH
Q 043190 760 SQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRM 835 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l 835 (1492)
...++++..++|+...... ...+++|+|+||+++..++.+. ...++++++|||||||++.+ .++..++.+...
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~--~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~- 174 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE--NFDCRAVETLILDEADRMLDMGFAQDIETIAAE- 174 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC--CcCcccCCEEEEECHHHHhCCCcHHHHHHHHHh-
Confidence 5558999999998765432 2246799999999998877653 33478899999999998754 455555554433
Q ss_pred HHhhhccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEecCCCcccc-CcEEEEeccCCccccccccccChhHHHHHh
Q 043190 836 RYISSQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFNFKPSVRPV-PLEVHIQGYPGKFYCPRMNSMNKPAYAAIC 912 (1492)
Q Consensus 836 ~~~~~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~~~~~~r~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 912 (1492)
.+...|++++|||++. ..++..++...+..+. ..+..+.. .+...+... . ........+..+.
T Consensus 175 ------~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~i~~~~~~~------~-~~~~k~~~l~~l~ 240 (434)
T PRK11192 175 ------TRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVE-AEPSRRERKKIHQWYYRA------D-DLEHKTALLCHLL 240 (434)
T ss_pred ------CccccEEEEEEeecCHHHHHHHHHHHccCCEEEE-ecCCcccccCceEEEEEe------C-CHHHHHHHHHHHH
Confidence 3346789999999974 5677777755443222 12211111 111111100 0 0011122333344
Q ss_pred hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 913 THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 913 ~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
.....+++||||+++..++.++..|.. .+..+..+||+|++.+|..
T Consensus 241 ~~~~~~~~lVF~~s~~~~~~l~~~L~~----------------------------------~~~~~~~l~g~~~~~~R~~ 286 (434)
T PRK11192 241 KQPEVTRSIVFVRTRERVHELAGWLRK----------------------------------AGINCCYLEGEMVQAKRNE 286 (434)
T ss_pred hcCCCCeEEEEeCChHHHHHHHHHHHh----------------------------------CCCCEEEecCCCCHHHHHH
Confidence 444568999999999999999987743 2567899999999999999
Q ss_pred HHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 993 VEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 993 v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
+++.|++|+++|||||+++++|+|+|++++||+ |+ .+.+...|+||+||+||.| ..|.+++++...+.
T Consensus 287 ~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~----~d------~p~s~~~yiqr~GR~gR~g--~~g~ai~l~~~~d~ 354 (434)
T PRK11192 287 AIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN----FD------MPRSADTYLHRIGRTGRAG--RKGTAISLVEAHDH 354 (434)
T ss_pred HHHHHhCCCCcEEEEccccccCccCCCCCEEEE----EC------CCCCHHHHhhcccccccCC--CCceEEEEecHHHH
Confidence 999999999999999999999999999999998 55 3346899999999999987 78999999987665
Q ss_pred HHHHH
Q 043190 1073 SFYKK 1077 (1492)
Q Consensus 1073 ~~~~~ 1077 (1492)
..+.+
T Consensus 355 ~~~~~ 359 (434)
T PRK11192 355 LLLGK 359 (434)
T ss_pred HHHHH
Confidence 54433
No 37
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.1e-39 Score=396.76 Aligned_cols=325 Identities=19% Similarity=0.283 Sum_probs=238.5
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC--------CceEEEEcccHHHHHHHHHHHH
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS--------DMKVVYIAPLKAIVRERMNDWK 755 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~--------~~~~l~i~P~r~La~q~~~~~~ 755 (1492)
+||.+|+++|.++++.++ .|+|+++++|||||||++|++|++..+...+ ..++||++||++||.|+++.+.
T Consensus 105 ~g~~~~~~iQ~~ai~~~~-~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~ 183 (475)
T PRK01297 105 LGFPYCTPIQAQVLGYTL-AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAA 183 (475)
T ss_pred CCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHH
Confidence 399999999999999998 7899999999999999999999999876532 4689999999999999999987
Q ss_pred HHhhhccCCEEEEEcCCCCcch--hc--cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHH
Q 043190 756 DRLVSQLGKEMVEMTGDYTPDL--MA--LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEV 830 (1492)
Q Consensus 756 ~~~~~~~g~~v~~~~g~~~~~~--~~--~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~ 830 (1492)
. +....|.++..++|+.+.+. +. ...++|+|+||++|..+..++ ...++++++|||||+|.+.+ .+...+..
T Consensus 184 ~-l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~--~~~l~~l~~lViDEah~l~~~~~~~~l~~ 260 (475)
T PRK01297 184 A-LTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG--EVHLDMVEVMVLDEADRMLDMGFIPQVRQ 260 (475)
T ss_pred H-hhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CcccccCceEEechHHHHHhcccHHHHHH
Confidence 7 44445888988888765332 22 235799999999998877764 34588999999999998753 33333333
Q ss_pred HHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCcc-ccCcEEEEeccCCccccccccccChhHH
Q 043190 831 IVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVR-PVPLEVHIQGYPGKFYCPRMNSMNKPAY 908 (1492)
Q Consensus 831 i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 908 (1492)
++..+. .....|++++|||+++ ...++..+...+. .+....... ...+...+..... .......
T Consensus 261 i~~~~~-----~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~--------~~k~~~l 326 (475)
T PRK01297 261 IIRQTP-----RKEERQTLLFSATFTDDVMNLAKQWTTDPA-IVEIEPENVASDTVEQHVYAVAG--------SDKYKLL 326 (475)
T ss_pred HHHhCC-----CCCCceEEEEEeecCHHHHHHHHHhccCCE-EEEeccCcCCCCcccEEEEEecc--------hhHHHHH
Confidence 332221 1235689999999865 4444444433322 111111111 1111111111100 0011122
Q ss_pred HHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHH
Q 043190 909 AAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDK 988 (1492)
Q Consensus 909 ~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 988 (1492)
..+.......++||||++++.++.++..|.+ .+..+..+||+++.+
T Consensus 327 ~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~----------------------------------~~~~~~~~~g~~~~~ 372 (475)
T PRK01297 327 YNLVTQNPWERVMVFANRKDEVRRIEERLVK----------------------------------DGINAAQLSGDVPQH 372 (475)
T ss_pred HHHHHhcCCCeEEEEeCCHHHHHHHHHHHHH----------------------------------cCCCEEEEECCCCHH
Confidence 2333344567899999999999998877632 246788999999999
Q ss_pred HHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 989 DRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 989 ~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
+|..+++.|++|+++|||||+++++|||+|++++||+ |+ .+.+..+|+||+|||||.| ..|.++++..
T Consensus 373 ~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~----~~------~P~s~~~y~Qr~GRaGR~g--~~g~~i~~~~ 440 (475)
T PRK01297 373 KRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN----FT------LPEDPDDYVHRIGRTGRAG--ASGVSISFAG 440 (475)
T ss_pred HHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE----eC------CCCCHHHHHHhhCccCCCC--CCceEEEEec
Confidence 9999999999999999999999999999999999998 44 3446899999999999988 7899999998
Q ss_pred CCcH
Q 043190 1069 EPKK 1072 (1492)
Q Consensus 1069 ~~~~ 1072 (1492)
+.+.
T Consensus 441 ~~d~ 444 (475)
T PRK01297 441 EDDA 444 (475)
T ss_pred HHHH
Confidence 7654
No 38
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.8e-39 Score=399.85 Aligned_cols=339 Identities=18% Similarity=0.236 Sum_probs=247.9
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
|....++++. ||.+|+|+|.++++.++ .++++|++||||||||++|.+|++..+... ..+++||++||++||.|++
T Consensus 13 L~~~ll~al~~~G~~~ptpiQ~~ai~~ll-~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~ 91 (629)
T PRK11634 13 LKAPILEALNDLGYEKPSPIQAECIPHLL-NGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVA 91 (629)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHH
Confidence 3334444443 99999999999999998 789999999999999999999999887543 3568999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~ 827 (1492)
+.+........+.++..++|+...+.. ....++|+|+||+++..++.+ ....++++++||+||||.+.+ .+...
T Consensus 92 ~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r--~~l~l~~l~~lVlDEAd~ml~~gf~~d 169 (629)
T PRK11634 92 EAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKR--GTLDLSKLSGLVLDEADEMLRMGFIED 169 (629)
T ss_pred HHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHc--CCcchhhceEEEeccHHHHhhcccHHH
Confidence 998875555457888888887654322 124689999999999777765 234488999999999997643 34344
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP 906 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 906 (1492)
++.++.. .+...|++++|||+|+ ...+...+...+..+...........+...+.. .....+..
T Consensus 170 i~~Il~~-------lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~--------v~~~~k~~ 234 (629)
T PRK11634 170 VETIMAQ-------IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWT--------VWGMRKNE 234 (629)
T ss_pred HHHHHHh-------CCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEE--------echhhHHH
Confidence 4444432 3557899999999987 344444333222222111111111111111110 00001112
Q ss_pred HHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCC
Q 043190 907 AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLN 986 (1492)
Q Consensus 907 ~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 986 (1492)
.+..+.......++||||+|+..+..++..|.. .++.+..+||+|+
T Consensus 235 ~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~----------------------------------~g~~~~~lhgd~~ 280 (629)
T PRK11634 235 ALVRFLEAEDFDAAIIFVRTKNATLEVAEALER----------------------------------NGYNSAALNGDMN 280 (629)
T ss_pred HHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHh----------------------------------CCCCEEEeeCCCC
Confidence 222333334557899999999999999987733 2567899999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 987 DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 987 ~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
+.+|..+++.|++|+++|||||+++++|||+|++.+||+ ||. +.+..+|+||+|||||.| ..|.|+++
T Consensus 281 q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~----~d~------P~~~e~yvqRiGRtGRaG--r~G~ai~~ 348 (629)
T PRK11634 281 QALREQTLERLKDGRLDILIATDVAARGLDVERISLVVN----YDI------PMDSESYVHRIGRTGRAG--RAGRALLF 348 (629)
T ss_pred HHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE----eCC------CCCHHHHHHHhccccCCC--CcceEEEE
Confidence 999999999999999999999999999999999999998 553 346899999999999988 88999999
Q ss_pred ecCCcHHHHHH
Q 043190 1067 VHEPKKSFYKK 1077 (1492)
Q Consensus 1067 ~~~~~~~~~~~ 1077 (1492)
+.+.+...+..
T Consensus 349 v~~~e~~~l~~ 359 (629)
T PRK11634 349 VENRERRLLRN 359 (629)
T ss_pred echHHHHHHHH
Confidence 98876555443
No 39
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=3.1e-39 Score=401.05 Aligned_cols=335 Identities=17% Similarity=0.240 Sum_probs=246.4
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
...+..||+..|+|+|.++++.++ .|+|+++++|||+|||+||++|++.. ++.+|||+|+++|+.+++..+..
T Consensus 450 ~~lk~~FG~~sFRp~Q~eaI~aiL-~GrDVLVimPTGSGKSLcYQLPAL~~-----~GiTLVISPLiSLmqDQV~~L~~- 522 (1195)
T PLN03137 450 VNNKKVFGNHSFRPNQREIINATM-SGYDVFVLMPTGGGKSLTYQLPALIC-----PGITLVISPLVSLIQDQIMNLLQ- 522 (1195)
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHHHHHHHHHHHc-----CCcEEEEeCHHHHHHHHHHHHHh-
Confidence 556778899999999999999998 78999999999999999999999864 57899999999999977766543
Q ss_pred hhhccCCEEEEEcCCCCcchhc---------cCCCcEEEECchhhh---HhhhcccCccccCcccEEEEecccccCCCCc
Q 043190 758 LVSQLGKEMVEMTGDYTPDLMA---------LLSADIIISTPEKWD---GISRNWHSRNYVKKVGLMILDEIHLLGAERG 825 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~~---------~~~~~Iiv~Tpe~l~---~l~~~~~~~~~l~~i~liViDEaH~l~~~~g 825 (1492)
.|+.+..+.|+....... ..+.+|+++|||++. .+++..........+++|||||||++.+ +|
T Consensus 523 ----~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSq-WG 597 (1195)
T PLN03137 523 ----ANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQ-WG 597 (1195)
T ss_pred ----CCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhh-cc
Confidence 288888888876543221 146799999999974 2333322111234589999999999853 44
Q ss_pred cHHHHHHHHHHHhhhccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccccccc
Q 043190 826 PILEVIVSRMRYISSQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM 903 (1492)
Q Consensus 826 ~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 903 (1492)
..+..-...+..+.... +..+++++|||.+. .+++...++.....++. ....|| .+...+... . ...
T Consensus 598 hDFRpdYr~L~~Lr~~f-p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr-~Sf~Rp-NL~y~Vv~k--~------kk~ 666 (1195)
T PLN03137 598 HDFRPDYQGLGILKQKF-PNIPVLALTATATASVKEDVVQALGLVNCVVFR-QSFNRP-NLWYSVVPK--T------KKC 666 (1195)
T ss_pred cchHHHHHHHHHHHHhC-CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEee-cccCcc-ceEEEEecc--c------hhH
Confidence 33333333332222222 35778999999876 46788888776543332 112222 222222110 0 000
Q ss_pred ChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecC
Q 043190 904 NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHA 983 (1492)
Q Consensus 904 ~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~ 983 (1492)
...+...+.....+.+.||||+|+++|+.++..|.. .++.+.+|||
T Consensus 667 le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~----------------------------------~Gika~~YHA 712 (1195)
T PLN03137 667 LEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQE----------------------------------FGHKAAFYHG 712 (1195)
T ss_pred HHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHH----------------------------------CCCCeeeeeC
Confidence 112223333334456899999999999999987743 2678999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEE
Q 043190 984 GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 984 ~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
+|++++|..+++.|..|+++|||||+++++|||+|++++||+ |+ .+.++.+|+||+|||||.| ..|.|
T Consensus 713 GLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH----yd------lPkSiEsYyQriGRAGRDG--~~g~c 780 (1195)
T PLN03137 713 SMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH----HS------LPKSIEGYHQECGRAGRDG--QRSSC 780 (1195)
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE----cC------CCCCHHHHHhhhcccCCCC--CCceE
Confidence 999999999999999999999999999999999999999998 54 2336999999999999998 88999
Q ss_pred EEEecCCcHHHHHHhhcC
Q 043190 1064 VILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1064 i~l~~~~~~~~~~~~l~~ 1081 (1492)
++++...+...+..++..
T Consensus 781 ILlys~~D~~~~~~lI~~ 798 (1195)
T PLN03137 781 VLYYSYSDYIRVKHMISQ 798 (1195)
T ss_pred EEEecHHHHHHHHHHHhc
Confidence 999988887777777754
No 40
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.9e-39 Score=393.22 Aligned_cols=333 Identities=21% Similarity=0.307 Sum_probs=248.7
Q ss_pred HhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 680 YEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 680 ~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
++..|||+.|+|+|.++++.++ .++++++++|||||||++|++|++.. ++.++|++|+++|+.|+++.+..
T Consensus 3 l~~~~g~~~~r~~Q~~ai~~~l-~g~dvlv~apTGsGKTl~y~lp~l~~-----~~~~lVi~P~~~L~~dq~~~l~~--- 73 (470)
T TIGR00614 3 LKTVFGLSSFRPVQLEVINAVL-LGRDCFVVMPTGGGKSLCYQLPALCS-----DGITLVISPLISLMEDQVLQLKA--- 73 (470)
T ss_pred hHhhcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCCcHhHHHHHHHHHc-----CCcEEEEecHHHHHHHHHHHHHH---
Confidence 5678899999999999999998 68899999999999999999998863 67899999999999999888754
Q ss_pred hccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHH
Q 043190 760 SQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIV 832 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~ 832 (1492)
.|+.+..++|+...+.. .....+|+++|||++....+.........+++++||||||++. ++|..+...+
T Consensus 74 --~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~-~~g~~fr~~~ 150 (470)
T TIGR00614 74 --SGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCIS-QWGHDFRPDY 150 (470)
T ss_pred --cCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccC-ccccccHHHH
Confidence 27888888887654311 1235799999999874322110011135789999999999985 3454444444
Q ss_pred HHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHH
Q 043190 833 SRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAA 910 (1492)
Q Consensus 833 ~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1492)
.++..+.... ++.+++++|||+++. .++.++++.....++..... ++ .+...+..... .....+...
T Consensus 151 ~~l~~l~~~~-~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~-r~-nl~~~v~~~~~--------~~~~~l~~~ 219 (470)
T TIGR00614 151 KALGSLKQKF-PNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD-RP-NLYYEVRRKTP--------KILEDLLRF 219 (470)
T ss_pred HHHHHHHHHc-CCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC-CC-CcEEEEEeCCc--------cHHHHHHHH
Confidence 4443333322 467899999999773 67888888766544432221 21 12211111000 011122333
Q ss_pred HhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHH
Q 043190 911 ICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDR 990 (1492)
Q Consensus 911 l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 990 (1492)
+....+++.+||||+|++.|+.++..|.. .+..+..+||+|++++|
T Consensus 220 l~~~~~~~~~IIF~~s~~~~e~la~~L~~----------------------------------~g~~~~~~H~~l~~~eR 265 (470)
T TIGR00614 220 IRKEFKGKSGIIYCPSRKKSEQVTASLQN----------------------------------LGIAAGAYHAGLEISAR 265 (470)
T ss_pred HHHhcCCCceEEEECcHHHHHHHHHHHHh----------------------------------cCCCeeEeeCCCCHHHH
Confidence 33344566779999999999999988743 25678999999999999
Q ss_pred HHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 991 SLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 991 ~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|+||+|||||.| ..|.|++++...
T Consensus 266 ~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~----~~~------P~s~~~y~Qr~GRaGR~G--~~~~~~~~~~~~ 333 (470)
T TIGR00614 266 DDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH----YSL------PKSMESYYQESGRAGRDG--LPSECHLFYAPA 333 (470)
T ss_pred HHHHHHHHcCCCcEEEEechhhccCCcccceEEEE----eCC------CCCHHHHHhhhcCcCCCC--CCceEEEEechh
Confidence 99999999999999999999999999999999998 543 336899999999999988 889999999998
Q ss_pred cHHHHHHhhcC
Q 043190 1071 KKSFYKKFLYE 1081 (1492)
Q Consensus 1071 ~~~~~~~~l~~ 1081 (1492)
+...+..++.+
T Consensus 334 d~~~~~~~~~~ 344 (470)
T TIGR00614 334 DINRLRRLLME 344 (470)
T ss_pred HHHHHHHHHhc
Confidence 88877777654
No 41
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-39 Score=333.05 Aligned_cols=344 Identities=15% Similarity=0.242 Sum_probs=257.4
Q ss_pred ccccccCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHH
Q 043190 670 LPVTALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAI 746 (1492)
Q Consensus 670 ~~~~~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~L 746 (1492)
+..-.|+++.++.+| ||+.|..+|+.|++.++ .|+|++..|..|+|||..|-+.+++.+.-+ +..++++++|||+|
T Consensus 29 F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~Il-kGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTREL 107 (400)
T KOG0328|consen 29 FDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQIL-KGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTREL 107 (400)
T ss_pred hhhcCchHHHHHHHHHhccCCchHHHhhhhhhhh-cccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHH
Confidence 344457778888887 99999999999999999 899999999999999999998888876543 34789999999999
Q ss_pred HHHHHHHHHHHhhhccCCEEEEEcCCCCcc--hhcc-CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-
Q 043190 747 VRERMNDWKDRLVSQLGKEMVEMTGDYTPD--LMAL-LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA- 822 (1492)
Q Consensus 747 a~q~~~~~~~~~~~~~g~~v~~~~g~~~~~--~~~~-~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~- 822 (1492)
|.|+-+.+.. ++..+|+++..+.|+.+.. .+.. .+.+++.+|||+...++++.. ...+.++++|+|||+.+.+
T Consensus 108 a~Qi~~vi~a-lg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~--L~tr~vkmlVLDEaDemL~k 184 (400)
T KOG0328|consen 108 AVQIQKVILA-LGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRS--LRTRAVKMLVLDEADEMLNK 184 (400)
T ss_pred HHHHHHHHHH-hcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhcc--ccccceeEEEeccHHHHHHh
Confidence 9998887766 7777799999988876532 2222 367999999999988888743 3367899999999997654
Q ss_pred CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccccc
Q 043190 823 ERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMN 901 (1492)
Q Consensus 823 ~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~ 901 (1492)
.++.++-.+ ++ ..+++.|++++|||+|. ..+..+++-.++..++.-..+..-..+... +.....
T Consensus 185 gfk~Qiydi---yr----~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf--------~v~ve~ 249 (400)
T KOG0328|consen 185 GFKEQIYDI---YR----YLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQF--------FVAVEK 249 (400)
T ss_pred hHHHHHHHH---HH----hCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhh--------eeeech
Confidence 444443333 33 24679999999999986 445555555555444332111110001111 111111
Q ss_pred cc-ChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEe
Q 043190 902 SM-NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGL 980 (1492)
Q Consensus 902 ~~-~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~ 980 (1492)
.. +...+..+-....-.+.+|||||++.+..+.+.+.+. .+.|..
T Consensus 250 EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~----------------------------------nftVss 295 (400)
T KOG0328|consen 250 EEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA----------------------------------NFTVSS 295 (400)
T ss_pred hhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh----------------------------------Cceeee
Confidence 11 1122222222233468999999999999988887543 577899
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCc
Q 043190 981 HHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQH 1060 (1492)
Q Consensus 981 ~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~ 1060 (1492)
.||+|++++|..+.+.|++|+.+||++|++-++|+|+|.+.+||+ ||-+ .....|+||+||+||-| +.
T Consensus 296 mHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN----YDLP------~nre~YIHRIGRSGRFG--Rk 363 (400)
T KOG0328|consen 296 MHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN----YDLP------NNRELYIHRIGRSGRFG--RK 363 (400)
T ss_pred ccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe----cCCC------ccHHHHhhhhccccccC--Cc
Confidence 999999999999999999999999999999999999999999998 4422 23789999999999976 99
Q ss_pred eEEEEEecCCcHHHHHHh
Q 043190 1061 GKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1061 G~~i~l~~~~~~~~~~~~ 1078 (1492)
|.++-|+..++...+..+
T Consensus 364 GvainFVk~~d~~~lrdi 381 (400)
T KOG0328|consen 364 GVAINFVKSDDLRILRDI 381 (400)
T ss_pred ceEEEEecHHHHHHHHHH
Confidence 999999998886655443
No 42
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.3e-38 Score=387.59 Aligned_cols=340 Identities=17% Similarity=0.241 Sum_probs=243.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
+....+++++ ||..|+|+|.++++.++ .++|++++||||||||++|++|+++.+... .+.++||++|+++|+.|+.
T Consensus 35 l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~-~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~ 113 (401)
T PTZ00424 35 LNEDLLRGIYSYGFEKPSAIQQRGIKPIL-DGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQ 113 (401)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHH
Confidence 4445555554 89999999999999998 788999999999999999999999987642 3578999999999999998
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~ 827 (1492)
+.+.. +....+..+..+.|+..... ....+++|+|+||+++..++++. ...+++++++||||+|++.+ .++..
T Consensus 114 ~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--~~~l~~i~lvViDEah~~~~~~~~~~ 190 (401)
T PTZ00424 114 KVVLA-LGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR--HLRVDDLKLFILDEADEMLSRGFKGQ 190 (401)
T ss_pred HHHHH-HhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC--CcccccccEEEEecHHHHHhcchHHH
Confidence 88776 44444777777777754322 12235799999999987777652 34588999999999998754 23222
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP 906 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 906 (1492)
+..++ ...+...|++++|||+++. .++...+...+..+...........+......... ......
T Consensus 191 ~~~i~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 256 (401)
T PTZ00424 191 IYDVF-------KKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEK-------EEWKFD 256 (401)
T ss_pred HHHHH-------hhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecCh-------HHHHHH
Confidence 22222 2345678999999999872 22222222222111111111111111111111000 000111
Q ss_pred HHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCC
Q 043190 907 AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLN 986 (1492)
Q Consensus 907 ~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 986 (1492)
....+.......++||||++++.++.++..|.+ .+.++..+||+++
T Consensus 257 ~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~----------------------------------~~~~~~~~h~~~~ 302 (401)
T PTZ00424 257 TLCDLYETLTITQAIIYCNTRRKVDYLTKKMHE----------------------------------RDFTVSCMHGDMD 302 (401)
T ss_pred HHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHH----------------------------------CCCcEEEEeCCCC
Confidence 122233334557899999999999988876632 2467899999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 987 DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 987 ~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
+++|..+++.|++|+++|||||+++++|+|+|++++||+ |+ .+.+..+|+||+|||||.| ..|.|+.+
T Consensus 303 ~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----~~------~p~s~~~y~qr~GRagR~g--~~G~~i~l 370 (401)
T PTZ00424 303 QKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN----YD------LPASPENYIHRIGRSGRFG--RKGVAINF 370 (401)
T ss_pred HHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE----EC------CCCCHHHEeecccccccCC--CCceEEEE
Confidence 999999999999999999999999999999999999997 54 2346899999999999987 78999999
Q ss_pred ecCCcHHHHHHh
Q 043190 1067 VHEPKKSFYKKF 1078 (1492)
Q Consensus 1067 ~~~~~~~~~~~~ 1078 (1492)
+++.+...+.++
T Consensus 371 ~~~~~~~~~~~~ 382 (401)
T PTZ00424 371 VTPDDIEQLKEI 382 (401)
T ss_pred EcHHHHHHHHHH
Confidence 988877665544
No 43
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.7e-40 Score=341.14 Aligned_cols=333 Identities=20% Similarity=0.300 Sum_probs=258.0
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
|..+.+..+| ||+.|.|+|.+++|.++ +|+|++.-|..|+|||-+|.+|+++.+... ..-++++++|+|+||.|+.
T Consensus 92 Lkr~LLmgIfe~G~ekPSPiQeesIPiaL-tGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtS 170 (459)
T KOG0326|consen 92 LKRELLMGIFEKGFEKPSPIQEESIPIAL-TGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTS 170 (459)
T ss_pred hhHHHHHHHHHhccCCCCCccccccceee-cchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHH
Confidence 4556667777 99999999999999999 899999999999999999999999988653 2458899999999999988
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~ 827 (1492)
+.+++ +++.+|++|...+|+++..+. .....+++|+|||++.++..+. ...+++...+|+||||.+.+ ++++.
T Consensus 171 qvc~~-lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg--Va~ls~c~~lV~DEADKlLs~~F~~~ 247 (459)
T KOG0326|consen 171 QVCKE-LSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG--VADLSDCVILVMDEADKLLSVDFQPI 247 (459)
T ss_pred HHHHH-HhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc--cccchhceEEEechhhhhhchhhhhH
Confidence 87765 778789999999998775433 2346799999999999999874 44589999999999997654 88888
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HH-HHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALANA-GD-LADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~-~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
++.++..+ ++..|+++.|||.|.. .. +.+++..+ ..++.-.+..+..+... |.-....-+-
T Consensus 248 ~e~li~~l-------P~~rQillySATFP~tVk~Fm~~~l~kP--y~INLM~eLtl~GvtQy--------YafV~e~qKv 310 (459)
T KOG0326|consen 248 VEKLISFL-------PKERQILLYSATFPLTVKGFMDRHLKKP--YEINLMEELTLKGVTQY--------YAFVEERQKV 310 (459)
T ss_pred HHHHHHhC-------CccceeeEEecccchhHHHHHHHhccCc--ceeehhhhhhhcchhhh--------eeeechhhhh
Confidence 88888765 5688999999999872 22 23333221 11221111111111111 1100111111
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
.++..+.....-.+.+|||||.+.++.+|..+.+ +++.+.+.|+.|
T Consensus 311 hCLntLfskLqINQsIIFCNS~~rVELLAkKITe----------------------------------lGyscyyiHakM 356 (459)
T KOG0326|consen 311 HCLNTLFSKLQINQSIIFCNSTNRVELLAKKITE----------------------------------LGYSCYYIHAKM 356 (459)
T ss_pred hhHHHHHHHhcccceEEEeccchHhHHHHHHHHh----------------------------------ccchhhHHHHHH
Confidence 2333343444456899999999999999988744 378889999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC--HHHHHHhhcccCCCCCCCceEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP--ITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~--~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
.+++|+.|+..|++|..+.||||+.+.||||++++++||+ +|+| .++|+||+||+||-| ..|.|
T Consensus 357 ~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN------------FDfpk~aEtYLHRIGRsGRFG--hlGlA 422 (459)
T KOG0326|consen 357 AQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN------------FDFPKNAETYLHRIGRSGRFG--HLGLA 422 (459)
T ss_pred HHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe------------cCCCCCHHHHHHHccCCccCC--CcceE
Confidence 9999999999999999999999999999999999999998 4555 889999999999976 99999
Q ss_pred EEEecCCcHHHHH
Q 043190 1064 VILVHEPKKSFYK 1076 (1492)
Q Consensus 1064 i~l~~~~~~~~~~ 1076 (1492)
+.+++-++...+.
T Consensus 423 InLityedrf~L~ 435 (459)
T KOG0326|consen 423 INLITYEDRFNLY 435 (459)
T ss_pred EEEEehhhhhhHH
Confidence 9999877655433
No 44
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=5.2e-39 Score=355.48 Aligned_cols=342 Identities=19% Similarity=0.230 Sum_probs=258.8
Q ss_pred hhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-----CCceEEEEcccHHHHHHH
Q 043190 678 NIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-----SDMKVVYIAPLKAIVRER 750 (1492)
Q Consensus 678 ~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-----~~~~~l~i~P~r~La~q~ 750 (1492)
..+.++. ||..++++|..+++.++ .|+++++.|-||||||++|++|+++.+... ++-.+++++|||+||.|+
T Consensus 92 ~t~kAi~~~GF~~MT~VQ~~ti~pll-~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~ 170 (543)
T KOG0342|consen 92 LTLKAIKEMGFETMTPVQQKTIPPLL-EGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQI 170 (543)
T ss_pred HHHHHHHhcCccchhHHHHhhcCccC-CCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHH
Confidence 3444554 99999999999999999 788999999999999999999999977543 456899999999999999
Q ss_pred HHHHHHHhhhccCCEEEEEcCCCCcc---hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCcc
Q 043190 751 MNDWKDRLVSQLGKEMVEMTGDYTPD---LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGP 826 (1492)
Q Consensus 751 ~~~~~~~~~~~~g~~v~~~~g~~~~~---~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~ 826 (1492)
+.+.+..+....+..+..+.|+.... .+....++|+|+|||+|.+.+.+... ...++++++|+||||++.+ .+..
T Consensus 171 ~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~-f~~r~~k~lvlDEADrlLd~GF~~ 249 (543)
T KOG0342|consen 171 FAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG-FLFRNLKCLVLDEADRLLDIGFEE 249 (543)
T ss_pred HHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc-chhhccceeEeecchhhhhcccHH
Confidence 99998866555478888888876543 22334889999999999998887544 4567789999999998765 5666
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
.++.|+..+ +...|..++|||.+. .++++.-.-..+...++......+...+ +..+.+........-.
T Consensus 250 di~~Ii~~l-------pk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The----~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 250 DVEQIIKIL-------PKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHE----RLEQGYVVAPSDSRFS 318 (543)
T ss_pred HHHHHHHhc-------cccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhh----cccceEEeccccchHH
Confidence 677766654 468899999999976 5666653322222222222222211111 1111111111111112
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
.++..+.++....++||||+|...+...+..|. .+...|.-+||+.
T Consensus 319 ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~----------------------------------~~dlpv~eiHgk~ 364 (543)
T KOG0342|consen 319 LLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLN----------------------------------YIDLPVLEIHGKQ 364 (543)
T ss_pred HHHHHHHHhcCCceEEEEechhhHHHHHHHHHh----------------------------------hcCCchhhhhcCC
Confidence 345556666666899999999999988887663 2356778889999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
++..|..+...|++.+.-|||||+++|||+|+|++++||+ |+++. ...+|+||+||+||.| ..|.+++
T Consensus 365 ~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ----~~~P~------d~~~YIHRvGRTaR~g--k~G~alL 432 (543)
T KOG0342|consen 365 KQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ----YDPPS------DPEQYIHRVGRTAREG--KEGKALL 432 (543)
T ss_pred cccccchHHHHHhhcccceEEecchhhccCCCCCceEEEE----eCCCC------CHHHHHHHhccccccC--CCceEEE
Confidence 9999999999999999999999999999999999999998 66654 3899999999999977 8999999
Q ss_pred EecCCcHHHHHHh
Q 043190 1066 LVHEPKKSFYKKF 1078 (1492)
Q Consensus 1066 l~~~~~~~~~~~~ 1078 (1492)
+..+.+..++..+
T Consensus 433 ~l~p~El~Flr~L 445 (543)
T KOG0342|consen 433 LLAPWELGFLRYL 445 (543)
T ss_pred EeChhHHHHHHHH
Confidence 9988887665443
No 45
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=8.1e-39 Score=375.64 Aligned_cols=385 Identities=28% Similarity=0.437 Sum_probs=296.4
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
|+|+ +.++|++|+..+. .|..++|+|+|.+|||++|+.+|.-.-. .+.+++|.+|.++|.+|.+++|+..|+.
T Consensus 294 ~pFe-lD~FQk~Ai~~le-rg~SVFVAAHTSAGKTvVAEYAialaq~--h~TR~iYTSPIKALSNQKfRDFk~tF~D--- 366 (1248)
T KOG0947|consen 294 YPFE-LDTFQKEAIYHLE-RGDSVFVAAHTSAGKTVVAEYAIALAQK--HMTRTIYTSPIKALSNQKFRDFKETFGD--- 366 (1248)
T ss_pred CCCC-ccHHHHHHHHHHH-cCCeEEEEecCCCCcchHHHHHHHHHHh--hccceEecchhhhhccchHHHHHHhccc---
Confidence 3665 8899999999986 8999999999999999999998876544 3789999999999999999999998864
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhcc
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~ 842 (1492)
++.+|||.... ..+.++|+|.|.|.+++.+ +...++++.+||+||+|.+++ +||.+||.++-- +
T Consensus 367 --vgLlTGDvqin----PeAsCLIMTTEILRsMLYr--gadliRDvE~VIFDEVHYiND~eRGvVWEEViIM-------l 431 (1248)
T KOG0947|consen 367 --VGLLTGDVQIN----PEASCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYINDVERGVVWEEVIIM-------L 431 (1248)
T ss_pred --cceeecceeeC----CCcceEeehHHHHHHHHhc--ccchhhccceEEEeeeeecccccccccceeeeee-------c
Confidence 44899997654 5789999999999888887 444588999999999999986 899999977643 4
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCCcc-eeEecCCCccccCcEEEEeccCCcc--------------------------
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVGEI-GLFNFKPSVRPVPLEVHIQGYPGKF-------------------------- 895 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~~~-~~~~~~~~~r~~~l~~~~~~~~~~~-------------------------- 895 (1492)
+..+++|++|||+||..++++|+|-.+. .++..+...||+|++..+..-....
T Consensus 432 P~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak 511 (1248)
T KOG0947|consen 432 PRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAK 511 (1248)
T ss_pred cccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccc
Confidence 6789999999999999999999997644 5667777899999987652110000
Q ss_pred ccc------cc----------------------ccc-Ch--hHHHHHhhc---CCCCCeeEEecChHHHHHHHHHHHHHH
Q 043190 896 YCP------RM----------------------NSM-NK--PAYAAICTH---SPTKPVLIFVSSRRQTRLTALDLIQFA 941 (1492)
Q Consensus 896 ~~~------~~----------------------~~~-~~--~~~~~l~~~---~~~~~~LIF~~s~~~~~~~a~~L~~~~ 941 (1492)
+.. +. ... .. +.+..+..+ ..--|++|||-|++.|+..|+.|...-
T Consensus 512 ~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~n 591 (1248)
T KOG0947|consen 512 FVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLN 591 (1248)
T ss_pred ccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccC
Confidence 000 00 000 00 112222221 233489999999999999999886542
Q ss_pred hcCCCCcccCCCChHHHHHHHhhcCc--------HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 043190 942 ASDETPRQFLGMPEEDLQMVLSQVTD--------QNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013 (1492)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~ 1013 (1492)
-.+...+.-.. --+++....+++ ..+.+.+..|+++||||+-+--++.|+-.|..|-++||+||-++++
T Consensus 592 L~~~~EKseV~---lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAM 668 (1248)
T KOG0947|consen 592 LTDSKEKSEVH---LFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAM 668 (1248)
T ss_pred cccchhHHHHH---HHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhh
Confidence 22111110000 012222333322 2456778899999999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC--cHHHHHHhh-cCCCceeeccc
Q 043190 1014 GVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP--KKSFYKKFL-YEPFPVESSLR 1090 (1492)
Q Consensus 1014 Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~--~~~~~~~~l-~~~~pies~l~ 1090 (1492)
|||.|+.++|+.+.+..|+... .++.+-+|.||+|||||.|.|..|++++++... +...+.+++ ..+.+++|++.
T Consensus 669 GVNMPARtvVF~Sl~KhDG~ef--R~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~SQFR 746 (1248)
T KOG0947|consen 669 GVNMPARTVVFSSLRKHDGNEF--RELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLESQFR 746 (1248)
T ss_pred hcCCCceeEEeeehhhccCcce--eecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhhhhhh
Confidence 9999999999999888888765 567899999999999999999999999999864 556677766 66788999887
Q ss_pred ccchh
Q 043190 1091 DQLHD 1095 (1492)
Q Consensus 1091 ~~l~~ 1095 (1492)
-...-
T Consensus 747 lTY~M 751 (1248)
T KOG0947|consen 747 LTYGM 751 (1248)
T ss_pred hHHHH
Confidence 65433
No 46
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=353.46 Aligned_cols=373 Identities=18% Similarity=0.219 Sum_probs=255.8
Q ss_pred hhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-------CCceEEEEcccHHHHHHHHHH
Q 043190 681 EALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-------SDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 681 ~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-------~~~~~l~i~P~r~La~q~~~~ 753 (1492)
+...++..||.+|.++||.++ +|++++|.|+||||||++|++|+++.+... .|.-+|+|+|||+||.|+|+.
T Consensus 152 ~~~m~i~~pTsVQkq~IP~lL-~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~ 230 (708)
T KOG0348|consen 152 NTKMKISAPTSVQKQAIPVLL-EGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYET 230 (708)
T ss_pred HHHhccCccchHhhcchhhhh-cCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHH
Confidence 344589999999999999999 699999999999999999999999987643 477899999999999999999
Q ss_pred HHHHhhhccCCEEEEEcC-CCCcc--hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHH
Q 043190 754 WKDRLVSQLGKEMVEMTG-DYTPD--LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILE 829 (1492)
Q Consensus 754 ~~~~~~~~~g~~v~~~~g-~~~~~--~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~ 829 (1492)
+.+.+..+.-+-.+.+.| ..... .+..++.+|+|+|||++.+.+.+... ..+++++++|+||+|.+.+ +++..+.
T Consensus 231 ~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~-i~~s~LRwlVlDEaDrlleLGfekdit 309 (708)
T KOG0348|consen 231 VQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKS-IKFSRLRWLVLDEADRLLELGFEKDIT 309 (708)
T ss_pred HHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccch-heeeeeeEEEecchhHHHhccchhhHH
Confidence 988776653232333444 33322 34456889999999999888876433 3477899999999998755 6788888
Q ss_pred HHHHHHHHhhhc------cCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccc-------------cCcEE--E
Q 043190 830 VIVSRMRYISSQ------TERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRP-------------VPLEV--H 887 (1492)
Q Consensus 830 ~i~~~l~~~~~~------~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~-------------~~l~~--~ 887 (1492)
.|+..+..+... .+...+-+++|||+.+ ..++++. ...+...+..+..... .+... .
T Consensus 310 ~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~-sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~ 388 (708)
T KOG0348|consen 310 QILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADL-SLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLD 388 (708)
T ss_pred HHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhc-cccCceeeeccchhhhcCcchhhhhhcCCcccccccc
Confidence 888877443221 1224677899999976 3444432 1222111111110000 00000 0
Q ss_pred EeccCCcc---ccccccccChhH----HHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHH
Q 043190 888 IQGYPGKF---YCPRMNSMNKPA----YAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQM 960 (1492)
Q Consensus 888 ~~~~~~~~---~~~~~~~~~~~~----~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 960 (1492)
....++.. |...-..+...+ +.......+..+++||+++.+.++.-+..+.+...........-.. .
T Consensus 389 ~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~-s----- 462 (708)
T KOG0348|consen 389 SFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPD-S----- 462 (708)
T ss_pred cccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcc-c-----
Confidence 01111110 000000011111 1122233556689999999999998888887765432110000000 0
Q ss_pred HHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccC
Q 043190 961 VLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDF 1040 (1492)
Q Consensus 961 ~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~ 1040 (1492)
+..-.-..+..+.-+||+|++++|..+++.|...+..||+||++++||+|+|.+++||. ||++.
T Consensus 463 ------~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ----Yd~P~------ 526 (708)
T KOG0348|consen 463 ------EGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ----YDPPF------ 526 (708)
T ss_pred ------CCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE----eCCCC------
Confidence 00011123556888999999999999999999998899999999999999999999998 77653
Q ss_pred CHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcC
Q 043190 1041 PITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1041 ~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~ 1081 (1492)
+.++|+||+||+.|.| ..|.+++|..+.+.+ |.+++..
T Consensus 527 s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y~~~l~~ 564 (708)
T KOG0348|consen 527 STADYLHRVGRTARAG--EKGEALLFLLPSEAE-YVNYLKK 564 (708)
T ss_pred CHHHHHHHhhhhhhcc--CCCceEEEecccHHH-HHHHHHh
Confidence 6899999999999999 899999999998887 6666654
No 47
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.3e-37 Score=392.81 Aligned_cols=418 Identities=18% Similarity=0.185 Sum_probs=284.8
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCc
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~ 775 (1492)
.+..+ .++++++++||||||||+++.+++++... .++++++++|+|++|.|+++++.+.++...|..|+...+...
T Consensus 10 i~~~l-~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~- 85 (819)
T TIGR01970 10 LRDAL-AAHPQVVLEAPPGAGKSTAVPLALLDAPG--IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN- 85 (819)
T ss_pred HHHHH-HcCCcEEEECCCCCCHHHHHHHHHHHhhc--cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc-
Confidence 34444 47889999999999999999999998764 357999999999999999999988777666777776544321
Q ss_pred chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccc--cCCCCccHHHHHHHHHHHhhhccCCceEEEEEcC
Q 043190 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHL--LGAERGPILEVIVSRMRYISSQTERAVRFIGLST 853 (1492)
Q Consensus 776 ~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~--l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSA 853 (1492)
....+++|+|+|||.+...+.+ ...++++++|||||+|. +..+.+ +..++.+......+.|+|+|||
T Consensus 86 --~~s~~t~I~v~T~G~Llr~l~~---d~~L~~v~~VIiDEaHER~L~~Dl~------L~ll~~i~~~lr~dlqlIlmSA 154 (819)
T TIGR01970 86 --KVSRRTRLEVVTEGILTRMIQD---DPELDGVGALIFDEFHERSLDADLG------LALALDVQSSLREDLKILAMSA 154 (819)
T ss_pred --ccCCCCcEEEECCcHHHHHHhh---CcccccCCEEEEeccchhhhccchH------HHHHHHHHHhcCCCceEEEEeC
Confidence 2234679999999998776664 34689999999999994 222322 1112222223356899999999
Q ss_pred CCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHH
Q 043190 854 ALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLT 933 (1492)
Q Consensus 854 Tl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~ 933 (1492)
|++. +.+.++++..+ ++. ...+..+++..+.......... ..+. .....+.. ...+++|||++++++++.+
T Consensus 155 Tl~~-~~l~~~l~~~~--vI~--~~gr~~pVe~~y~~~~~~~~~~--~~v~-~~l~~~l~-~~~g~iLVFlpg~~eI~~l 225 (819)
T TIGR01970 155 TLDG-ERLSSLLPDAP--VVE--SEGRSFPVEIRYLPLRGDQRLE--DAVS-RAVEHALA-SETGSILVFLPGQAEIRRV 225 (819)
T ss_pred CCCH-HHHHHHcCCCc--EEE--ecCcceeeeeEEeecchhhhHH--HHHH-HHHHHHHH-hcCCcEEEEECCHHHHHHH
Confidence 9965 45778875322 222 2234444544433221111000 0000 11111111 2367899999999999999
Q ss_pred HHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 043190 934 ALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013 (1492)
Q Consensus 934 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~ 1013 (1492)
+..|.+... .++.+..+||+|++++|..+++.|++|+.+|||||+++++
T Consensus 226 ~~~L~~~~~-------------------------------~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAEr 274 (819)
T TIGR01970 226 QEQLAERLD-------------------------------SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAET 274 (819)
T ss_pred HHHHHhhcC-------------------------------CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhh
Confidence 887754210 1467899999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEecc----eeeeCccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCce
Q 043190 1014 GVNLPAHLVIIKGT----EYYDGKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPV 1085 (1492)
Q Consensus 1014 Gvdip~~~~VI~~~----~~~~~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pi 1085 (1492)
|||+|++++||+.. ..||+..+. ...+|.+++.||+|||||. .+|.||.++++.+...+..+ ..|
T Consensus 275 gItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~~~~~l~~~---~~P- 347 (819)
T TIGR01970 275 SLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEEQHQRLPAQ---DEP- 347 (819)
T ss_pred cccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHHHHHhhhcC---CCc-
Confidence 99999999999854 356665431 2457899999999999997 59999999987654333222 111
Q ss_pred eecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCcee
Q 043190 1086 ESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKM 1165 (1492)
Q Consensus 1086 es~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~ 1165 (1492)
.-+...|...++.....| +.+..+ +.|+ ..| -.+.++.++..|...|+|+.
T Consensus 348 -EI~r~~L~~~~L~l~~~g-~~~~~~-~~~l----------~~P----------------~~~~i~~a~~~L~~lgald~ 398 (819)
T TIGR01970 348 -EILQADLSGLALELAQWG-AKDPSD-LRWL----------DAP----------------PSVALAAARQLLQRLGALDA 398 (819)
T ss_pred -ceeccCcHHHHHHHHHcC-CCChhh-CCCC----------CCc----------------CHHHHHHHHHHHHHCCCCCC
Confidence 222333444444433333 222211 1111 111 12457889999999999965
Q ss_pred cCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHH
Q 043190 1166 TEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHI 1208 (1492)
Q Consensus 1166 ~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~i 1208 (1492)
++ .+|++|+.|+.++++|..+++++.+....+ ....+.+
T Consensus 399 ~~---~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~-~~~~~~i 437 (819)
T TIGR01970 399 QG---RLTAHGKAMAALGCHPRLAAMLLSAHSTGL-AALACDL 437 (819)
T ss_pred CC---CcCHHHHHHHhcCCCHHHHHHHHHhhhcCC-HHHHHHH
Confidence 44 469999999999999999999997655443 3334333
No 48
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=353.97 Aligned_cols=338 Identities=18% Similarity=0.257 Sum_probs=259.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-----CCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-----SDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-----~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
+|..++.+|+++|+.++ .|++++.+|.||||||++|+.|+++.+... .|--+|||+|||+||.|+++.+.+ .+
T Consensus 88 ~fv~~teiQ~~~Ip~aL-~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~k-vg 165 (758)
T KOG0343|consen 88 KFVKMTEIQRDTIPMAL-QGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNK-VG 165 (758)
T ss_pred CCccHHHHHHhhcchhc-cCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHH-Hh
Confidence 88899999999999999 899999999999999999999999987542 467899999999999999999887 67
Q ss_pred hccCCEEEEEcCCCCcc--hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-CCCccHHHHHHHHHH
Q 043190 760 SQLGKEMVEMTGDYTPD--LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVSRMR 836 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~--~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~~~g~~~~~i~~~l~ 836 (1492)
+..+.+++.+.|+.... .......+|+|||||+|...+.... ....+++.++|+|||+.+. .++..+++.|++.+
T Consensus 166 k~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~-~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~l- 243 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENP-NFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENL- 243 (758)
T ss_pred hccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcC-CCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhC-
Confidence 76688999998876643 3445688999999999887776532 2345788999999999764 46777888887754
Q ss_pred HhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecC---CCccccCcEEEEeccCCccccccccccChhHHHHHh
Q 043190 837 YISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFK---PSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAIC 912 (1492)
Q Consensus 837 ~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~---~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 912 (1492)
+...|.+++|||... ..++++.-- .++..+... ....|..+...+.-. ........++..|.
T Consensus 244 ------P~~RQTLLFSATqt~svkdLaRLsL-~dP~~vsvhe~a~~atP~~L~Q~y~~v-------~l~~Ki~~L~sFI~ 309 (758)
T KOG0343|consen 244 ------PKKRQTLLFSATQTKSVKDLARLSL-KDPVYVSVHENAVAATPSNLQQSYVIV-------PLEDKIDMLWSFIK 309 (758)
T ss_pred ------ChhheeeeeecccchhHHHHHHhhc-CCCcEEEEeccccccChhhhhheEEEE-------ehhhHHHHHHHHHH
Confidence 567899999999866 567766422 222222111 112222222222111 11111122344444
Q ss_pred hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 913 THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 913 ~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
. ....++|||++|.+++..++..+++.. .+..+..+||+|++..|..
T Consensus 310 s-hlk~K~iVF~SscKqvkf~~e~F~rlr--------------------------------pg~~l~~L~G~~~Q~~R~e 356 (758)
T KOG0343|consen 310 S-HLKKKSIVFLSSCKQVKFLYEAFCRLR--------------------------------PGIPLLALHGTMSQKKRIE 356 (758)
T ss_pred h-ccccceEEEEehhhHHHHHHHHHHhcC--------------------------------CCCceeeeccchhHHHHHH
Confidence 4 456789999999999999998886643 2567889999999999999
Q ss_pred HHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC--HHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 993 VEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP--ITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 993 v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~--~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
++..|-...--||+||++++||+|+|++++||. +|+| +.+|+||+||+.|.+ ..|.++++..++
T Consensus 357 v~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ------------~DCPedv~tYIHRvGRtAR~~--~~G~sll~L~ps 422 (758)
T KOG0343|consen 357 VYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ------------VDCPEDVDTYIHRVGRTARYK--ERGESLLMLTPS 422 (758)
T ss_pred HHHHHHHhcceEEEeehhhhccCCCcccceEEE------------ecCchhHHHHHHHhhhhhccc--CCCceEEEEcch
Confidence 999999988899999999999999999999998 5555 899999999999965 899999999999
Q ss_pred cHHHHHHhh-cCCCceee
Q 043190 1071 KKSFYKKFL-YEPFPVES 1087 (1492)
Q Consensus 1071 ~~~~~~~~l-~~~~pies 1087 (1492)
+.+.+...+ ....|++.
T Consensus 423 EeE~~l~~Lq~k~I~i~~ 440 (758)
T KOG0343|consen 423 EEEAMLKKLQKKKIPIKE 440 (758)
T ss_pred hHHHHHHHHHHcCCCHHh
Confidence 866555544 44456543
No 49
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2.1e-37 Score=392.56 Aligned_cols=412 Identities=17% Similarity=0.180 Sum_probs=285.8
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCc
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~ 775 (1492)
.+.++ .++++++++||||||||+++.+++++.... .+++++++|+|++|.|+++++.+.++...|..|+...+...
T Consensus 13 i~~~l-~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~--~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~- 88 (812)
T PRK11664 13 LLTAL-KTAPQVLLKAPTGAGKSTWLPLQLLQHGGI--NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES- 88 (812)
T ss_pred HHHHH-HhCCCEEEEcCCCCCHHHHHHHHHHHcCCc--CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc-
Confidence 33444 477899999999999999999999986433 46999999999999999999988787767888877665432
Q ss_pred chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 776 ~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
....+++|+|+|||++..++.+ ...++++++|||||+|.. +...+..+..++.+......+.|+|+||||+
T Consensus 89 --~~~~~t~I~v~T~G~Llr~l~~---d~~L~~v~~IIlDEaHER----~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl 159 (812)
T PRK11664 89 --KVGPNTRLEVVTEGILTRMIQR---DPELSGVGLVILDEFHER----SLQADLALALLLDVQQGLRDDLKLLIMSATL 159 (812)
T ss_pred --ccCCCCcEEEEChhHHHHHHhh---CCCcCcCcEEEEcCCCcc----ccccchHHHHHHHHHHhCCccceEEEEecCC
Confidence 1223568999999998777664 346899999999999953 2222222222233333345688999999999
Q ss_pred CChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHH
Q 043190 856 ANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTAL 935 (1492)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~ 935 (1492)
+. +.+.++++... ++. ...+..+++..+...+...+.. ... ......+.. ...+.+|||+|++++++.++.
T Consensus 160 ~~-~~l~~~~~~~~--~I~--~~gr~~pV~~~y~~~~~~~~~~--~~v-~~~l~~~l~-~~~g~iLVFlpg~~ei~~l~~ 230 (812)
T PRK11664 160 DN-DRLQQLLPDAP--VIV--SEGRSFPVERRYQPLPAHQRFD--EAV-ARATAELLR-QESGSLLLFLPGVGEIQRVQE 230 (812)
T ss_pred CH-HHHHHhcCCCC--EEE--ecCccccceEEeccCchhhhHH--HHH-HHHHHHHHH-hCCCCEEEEcCCHHHHHHHHH
Confidence 64 56777775322 121 2234445554443222111100 000 001111111 246899999999999999998
Q ss_pred HHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccccc
Q 043190 936 DLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015 (1492)
Q Consensus 936 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gv 1015 (1492)
.|.+... .+..+..+||+|+.++|..+++.|++|+.+|||||+++++||
T Consensus 231 ~L~~~~~-------------------------------~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsL 279 (812)
T PRK11664 231 QLASRVA-------------------------------SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSL 279 (812)
T ss_pred HHHHhcc-------------------------------CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcc
Confidence 8854211 135688999999999999999999999999999999999999
Q ss_pred CCCCcEEEEecc----eeeeCccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCceee
Q 043190 1016 NLPAHLVIIKGT----EYYDGKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVES 1087 (1492)
Q Consensus 1016 dip~~~~VI~~~----~~~~~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies 1087 (1492)
|+|++++||+.. ..||+..+. -..+|.++|.||+|||||. .+|.||.++++.+. ..+.....| .
T Consensus 280 tIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~~---~~l~~~~~P--E 351 (812)
T PRK11664 280 TIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQA---ERAAAQSEP--E 351 (812)
T ss_pred cccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHHH---hhCccCCCC--c
Confidence 999999999853 347766542 1356789999999999997 49999999987553 333322222 3
Q ss_pred cccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecC
Q 043190 1088 SLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTE 1167 (1492)
Q Consensus 1088 ~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~ 1167 (1492)
-+...|...++.....| +.+..+ +.|+ +.. -.+.+++++..|...|+|+.++
T Consensus 352 I~r~dL~~~~L~l~~~g-~~~~~~-~~~l------------------d~P--------~~~~~~~A~~~L~~lgald~~g 403 (812)
T PRK11664 352 ILHSDLSGLLLELLQWG-CHDPAQ-LSWL------------------DQP--------PAAALAAAKRLLQQLGALDGQG 403 (812)
T ss_pred eeccchHHHHHHHHHcC-CCCHHh-CCCC------------------CCC--------CHHHHHHHHHHHHHCCCCCCCC
Confidence 34445555555544444 222221 1111 111 1245789999999999996443
Q ss_pred CccccccchhhhhhccccHHHHHHHHhccCCC
Q 043190 1168 DTVEPTMLGTIASQYYLSYVTVSMFGSNIGPD 1199 (1492)
Q Consensus 1168 ~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~ 1199 (1492)
.+|++|+.|+.++++|..+++++.+....
T Consensus 404 ---~lT~~G~~m~~lp~~Prla~~ll~a~~~~ 432 (812)
T PRK11664 404 ---RLTARGRKMAALGNDPRLAAMLVAAKEDD 432 (812)
T ss_pred ---CcCHHHHHHHhcCCchHHHHHHHHHHhcC
Confidence 56999999999999999999998765433
No 50
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=2e-38 Score=377.27 Aligned_cols=501 Identities=20% Similarity=0.246 Sum_probs=339.2
Q ss_pred ccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHH---------------HH
Q 043190 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEIC---------------YK 72 (1492)
Q Consensus 8 ~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~---------------~~ 72 (1492)
+|+||||||+||..+++.||.+. ++.+.+|||||..+.......-...+...+.++. ..
T Consensus 378 ~~iIGMSATi~N~~lL~~~L~A~------~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~ 451 (1008)
T KOG0950|consen 378 VQIIGMSATIPNNSLLQDWLDAF------VYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVG 451 (1008)
T ss_pred eeEeeeecccCChHHHHHHhhhh------heecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceee
Confidence 89999999999999999999876 5788999999987653221100000222222221 11
Q ss_pred HHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCC-CCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 73 KVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNN-DTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 73 ~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
...+.+.++.++||||++|+.|+.+|..+....+.......+.. .+..+............+..|+..+.+|++|||+|
T Consensus 452 L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaG 531 (1008)
T KOG0950|consen 452 LCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAG 531 (1008)
T ss_pred ehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccc
Confidence 23445567889999999999999999888776654221111111 01111111111222334677999999999999999
Q ss_pred CChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEe
Q 043190 152 MLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
|+.++|+.||..||+|.+.|++||||||+|||+||++|||+...+.- ...+...|.||+|||||+|.|+-|.+|+++
T Consensus 532 LT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~---~~l~~~~YkQM~GRAGR~gidT~GdsiLI~ 608 (1008)
T KOG0950|consen 532 LTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGR---EFLTRLEYKQMVGRAGRTGIDTLGDSILII 608 (1008)
T ss_pred cccchHHHHHHHHHhcCeEEEEecchhhccCcCCcceeEEeCCcccc---chhhhhhHHhhhhhhhhcccccCcceEEEe
Confidence 99999999999999999999999999999999999999998544322 135778899999999999999999999999
Q ss_pred CCccHHHHHHHhcCCC-ccccchhH----hHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCC
Q 043190 232 SHDKLAYYLRLLTSQL-PIESQFIS----SLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIAD 306 (1492)
Q Consensus 232 ~~~~~~~~~~~~~~~~-~ies~l~~----~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~ 306 (1492)
.+.+.....++++.+. |..|++.. .....+..-|+.+...+.+|...+...|+++.+...- .-....+.-...
T Consensus 609 k~~e~~~~~~lv~~~~~~~~S~l~~e~~g~~~~~ilsvI~~~ia~t~~di~~~va~tl~s~q~~~~--~~~~~le~~s~q 686 (1008)
T KOG0950|consen 609 KSSEKKRVRELVNSPLKPLNSCLSNEVNGPILMAILSLISLKIAETAEDILHFVAVTLLSAQEKPE--NVREQLEMESDQ 686 (1008)
T ss_pred eccchhHHHHHHhccccccccccccccccccceeehhhhcchhhhhHHHHHHHHHHhhhhcccchh--hhhhcccchhhh
Confidence 9999888888888876 67787754 2334567788899999999999999999998875422 111111110000
Q ss_pred chHHHHHHHHHHHHHHHHHHhcccccc-ccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCC------CHHHHHHHhc
Q 043190 307 PSLSLKQRALVTDAARALDKAKMMRFD-EKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHM------NDSEVIEMVS 379 (1492)
Q Consensus 307 ~~~~~~~~~~~~~~l~~L~~~~~i~~~-~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~------~~~~ll~ils 379 (1492)
-.+.... -+++.+..+|... .....-.+|++|+..-.-.+++.-+..+...++..+ +...++.+..
T Consensus 687 l~~~~~~-------~d~~l~~d~i~~~~~~~~~~~~t~Lg~a~f~~~~~~~~a~~l~~~L~~~~~~~vle~~lh~lylvt 759 (1008)
T KOG0950|consen 687 LVINDFK-------SDQLLEKDFIYKKQIENLRENITRLGRACFNAGSDPEVANILFADLKKSLPQLVLESSLHLLYLVT 759 (1008)
T ss_pred hccchhh-------HHHHHHHHHHHhHHHHhhhhhhhhhhhhhhcccCChhhhHHHHHHHHHhhhccccccccceeeeec
Confidence 0111110 0223333333210 001112399999988888888887777777676543 1111111111
Q ss_pred CCccCCC-C----------ccchhHHHHHHHH--HhcCCccc-ccCC--C---CCh---hHHHHHHHHHHHcCCCCC---
Q 043190 380 HSSEFEN-I----------VVRDEEQNELETL--VQTLCPVE-VKGG--P---SNK---HGKISILIQLYISRGWID--- 434 (1492)
Q Consensus 380 ~s~Ef~~-i----------~~R~~e~~~l~~l--~~~~~~~~-~~~~--~---~~~---~~K~~~Llqa~i~~~~~~--- 434 (1492)
--.|-.+ + .+...++...+.+ ... +-+. .++. . ..+ ..-+.+.||.++++.++.
T Consensus 760 P~~~~~~~~dwli~f~i~~~L~~~~~~~~~~~G~~e~-fi~~~~~gqs~~~~~~~~~~~r~y~~l~L~~li~espi~~V~ 838 (1008)
T KOG0950|consen 760 PYLEVMNDIDWLIYFQIYHTLPSPEQKLAKLLGVIES-FIEKCVSGQSVRNLQNVQKRKRLYVALALQKLINESPIRTVA 838 (1008)
T ss_pred chHhhcccccHHHHHHHHhcCCcHHHHHHhhhchHHH-HHHHhhhccccccccchhHHHHHHHHHHHHHHHhhCcHHHHH
Confidence 1101001 0 0111222111111 000 0000 0110 0 111 233778899999998876
Q ss_pred -CchhH-hhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-C
Q 043190 435 -TFSLV-SDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-D 511 (1492)
Q Consensus 435 -~~~l~-~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~ 511 (1492)
+|... +-....++++.....+..-.|...+|...-...-++.+++..+.-.+..||..+| .+...+++.|++.|+ |
T Consensus 839 ~kYk~~rg~lqall~~a~~~a~~It~Fce~l~w~~~~~l~~~~~~rl~~g~~~eL~~Lmrv~-~~~~~RAr~lf~Agf~t 917 (1008)
T KOG0950|consen 839 EKYKVERGRLQALLSNASSFASLITFFCESIQWFPLRALLSEFYGRLSFGGHAELIPLMRVP-DVKAERARQLFKAGFTS 917 (1008)
T ss_pred HHhCchHHHHHHHHhcchhHHHHHHHHHHHhhhcchHHHHHHHHHHHhccchhhhhhhhcCc-hhHHHHHHHHHHhhccc
Confidence 45544 8889999999999999999999999985555566788999999999999999999 999999999999999 9
Q ss_pred hhHHhhCCHHHHHHHhc
Q 043190 512 LDRLQEMEEKDIGALIR 528 (1492)
Q Consensus 512 ~~~l~~~~~~~~~~l~~ 528 (1492)
+.++++.++.++.+-+.
T Consensus 918 v~~iA~a~p~klvkel~ 934 (1008)
T KOG0950|consen 918 VGSIANATPEKLVKELP 934 (1008)
T ss_pred hHHHhcCChHHHHHHhh
Confidence 99999999999988775
No 51
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5.8e-37 Score=384.75 Aligned_cols=336 Identities=19% Similarity=0.310 Sum_probs=247.0
Q ss_pred ccccCchhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHH
Q 043190 672 VTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 672 ~~~l~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~ 751 (1492)
...+..+.++..|||..|+|+|.++++.++ .++++++++|||+|||++|.+|++.. .+.++|++|+++|+.|++
T Consensus 9 ~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il-~g~dvlv~apTGsGKTl~y~lpal~~-----~g~tlVisPl~sL~~dqv 82 (607)
T PRK11057 9 LESLAKQVLQETFGYQQFRPGQQEIIDAVL-SGRDCLVVMPTGGGKSLCYQIPALVL-----DGLTLVVSPLISLMKDQV 82 (607)
T ss_pred chhHHHHHHHHHcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHc-----CCCEEEEecHHHHHHHHH
Confidence 334445678888999999999999999998 78999999999999999999999864 568999999999999998
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhH--hhhcccCccccCcccEEEEecccccCC
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDG--ISRNWHSRNYVKKVGLMILDEIHLLGA 822 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~--l~~~~~~~~~l~~i~liViDEaH~l~~ 822 (1492)
+.+... |+.+..+.+....+.. .....+++++|||++.. +... ....+++++||||||++.+
T Consensus 83 ~~l~~~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~----l~~~~l~~iVIDEaH~i~~ 153 (607)
T PRK11057 83 DQLLAN-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEH----LAHWNPALLAVDEAHCISQ 153 (607)
T ss_pred HHHHHc-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHH----HhhCCCCEEEEeCcccccc
Confidence 887652 7777777776543321 12357899999998742 2221 1234789999999998853
Q ss_pred CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccc
Q 043190 823 ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM 900 (1492)
Q Consensus 823 ~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~ 900 (1492)
+|..+...+..+..+... -++.+++++|||+++. .++..+++.....++. ....++. +...+.. .
T Consensus 154 -~G~~fr~~y~~L~~l~~~-~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~-~~~~r~n-l~~~v~~--------~- 220 (607)
T PRK11057 154 -WGHDFRPEYAALGQLRQR-FPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRPN-IRYTLVE--------K- 220 (607)
T ss_pred -ccCcccHHHHHHHHHHHh-CCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE-CCCCCCc-ceeeeee--------c-
Confidence 333333333333333222 2467899999999873 4677777765543322 2222221 1111100 0
Q ss_pred cccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEe
Q 043190 901 NSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGL 980 (1492)
Q Consensus 901 ~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~ 980 (1492)
......+...+ ....++++||||+|++.|+.++..|.+ .+..+..
T Consensus 221 ~~~~~~l~~~l-~~~~~~~~IIFc~tr~~~e~la~~L~~----------------------------------~g~~v~~ 265 (607)
T PRK11057 221 FKPLDQLMRYV-QEQRGKSGIIYCNSRAKVEDTAARLQS----------------------------------RGISAAA 265 (607)
T ss_pred cchHHHHHHHH-HhcCCCCEEEEECcHHHHHHHHHHHHh----------------------------------CCCCEEE
Confidence 00001122222 234568899999999999999988743 2567899
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCc
Q 043190 981 HHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQH 1060 (1492)
Q Consensus 981 ~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~ 1060 (1492)
+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|+||+|||||.| .+
T Consensus 266 ~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~----~d~------P~s~~~y~Qr~GRaGR~G--~~ 333 (607)
T PRK11057 266 YHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDI------PRNIESYYQETGRAGRDG--LP 333 (607)
T ss_pred ecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE----eCC------CCCHHHHHHHhhhccCCC--CC
Confidence 999999999999999999999999999999999999999999998 553 346899999999999988 78
Q ss_pred eEEEEEecCCcHHHHHHhhcCC
Q 043190 1061 GKAVILVHEPKKSFYKKFLYEP 1082 (1492)
Q Consensus 1061 G~~i~l~~~~~~~~~~~~l~~~ 1082 (1492)
|.|+++++..+...+.+++.+.
T Consensus 334 ~~~ill~~~~d~~~~~~~~~~~ 355 (607)
T PRK11057 334 AEAMLFYDPADMAWLRRCLEEK 355 (607)
T ss_pred ceEEEEeCHHHHHHHHHHHhcC
Confidence 9999999998888888887654
No 52
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=7.3e-37 Score=386.32 Aligned_cols=334 Identities=20% Similarity=0.298 Sum_probs=251.9
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
..++..|||++|+|+|.++++.++ .|+|+++++|||+|||++|++|++.. ++.++|++|+++|+.|++..+..
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il-~g~dvlv~~PTG~GKTl~y~lpal~~-----~g~~lVisPl~sL~~dq~~~l~~- 75 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVL-DGRDVLVVMPTGGGKSLCYQVPALLL-----KGLTVVISPLISLMKDQVDQLRA- 75 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHH-cCCCEEEEcCCCccHhHHHHHHHHHc-----CCcEEEEcCCHHHHHHHHHHHHH-
Confidence 456788999999999999999999 78899999999999999999998853 57889999999999999888765
Q ss_pred hhhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHH
Q 043190 758 LVSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEV 830 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~ 830 (1492)
+ |+.+..++|+...+.. .....+|+++|||++.... +.......+++++||||||++. .+|..++.
T Consensus 76 ~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~--~~~~l~~~~l~~iViDEaH~i~-~~g~~frp 148 (591)
T TIGR01389 76 A----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDY--FLNMLQRIPIALVAVDEAHCVS-QWGHDFRP 148 (591)
T ss_pred c----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChH--HHHHHhcCCCCEEEEeCCcccc-cccCccHH
Confidence 2 7888888887764422 1236799999999874211 1112224689999999999985 45555555
Q ss_pred HHHHHHHhhhccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHH
Q 043190 831 IVSRMRYISSQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAY 908 (1492)
Q Consensus 831 i~~~l~~~~~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 908 (1492)
.+.++..+....+ ..+++++|||.+. ..++..|++......+. ....|+ .+...+... ......+.
T Consensus 149 ~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~-nl~~~v~~~---------~~~~~~l~ 216 (591)
T TIGR01389 149 EYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFI-TSFDRP-NLRFSVVKK---------NNKQKFLL 216 (591)
T ss_pred HHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEe-cCCCCC-CcEEEEEeC---------CCHHHHHH
Confidence 5555554444333 3349999999876 46788899876654432 222222 122111110 01111223
Q ss_pred HHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHH
Q 043190 909 AAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDK 988 (1492)
Q Consensus 909 ~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 988 (1492)
..+.. ..++++||||+|++.|+.++..|.. .+..+..+||+|+.+
T Consensus 217 ~~l~~-~~~~~~IIf~~sr~~~e~la~~L~~----------------------------------~g~~~~~~H~~l~~~ 261 (591)
T TIGR01389 217 DYLKK-HRGQSGIIYASSRKKVEELAERLES----------------------------------QGISALAYHAGLSNK 261 (591)
T ss_pred HHHHh-cCCCCEEEEECcHHHHHHHHHHHHh----------------------------------CCCCEEEEECCCCHH
Confidence 33333 3367899999999999999987743 256789999999999
Q ss_pred HHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 989 DRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 989 ~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
+|..+++.|.+|+++|||||+++++|||+|++++||+ |+. +.+..+|.||+|||||.| ..|.|+++++
T Consensus 262 ~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~----~~~------p~s~~~y~Q~~GRaGR~G--~~~~~il~~~ 329 (591)
T TIGR01389 262 VRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH----YDM------PGNLESYYQEAGRAGRDG--LPAEAILLYS 329 (591)
T ss_pred HHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE----cCC------CCCHHHHhhhhccccCCC--CCceEEEecC
Confidence 9999999999999999999999999999999999998 443 336899999999999988 7899999999
Q ss_pred CCcHHHHHHhhcCCCc
Q 043190 1069 EPKKSFYKKFLYEPFP 1084 (1492)
Q Consensus 1069 ~~~~~~~~~~l~~~~p 1084 (1492)
..+...+..++....+
T Consensus 330 ~~d~~~~~~~i~~~~~ 345 (591)
T TIGR01389 330 PADIALLKRRIEQSEA 345 (591)
T ss_pred HHHHHHHHHHHhccCC
Confidence 9888888888876554
No 53
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-37 Score=333.90 Aligned_cols=331 Identities=18% Similarity=0.249 Sum_probs=243.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-------CCceEEEEcccHHHHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-------SDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-------~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
||..|+|+|+|++|.++ +|.+++..|.||+|||++|++|-+-++..+ .+..+|+++|||+||.|+-.+..+
T Consensus 239 GFqKPtPIqSQaWPI~L-QG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~k- 316 (629)
T KOG0336|consen 239 GFQKPTPIQSQAWPILL-QGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKK- 316 (629)
T ss_pred cCCCCCcchhcccceee-cCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhH-
Confidence 99999999999999999 899999999999999999999987655432 467899999999999998877665
Q ss_pred hhhccCCEEEEEcCCCCcc--hh-ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHH
Q 043190 758 LVSQLGKEMVEMTGDYTPD--LM-ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVS 833 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~--~~-~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~ 833 (1492)
.... |.+..++.|+-... .. ...+.+|+++||++|..+... ....+..+.++|+|||+.|.+ ++.+++..++-
T Consensus 317 ysyn-g~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~--n~i~l~siTYlVlDEADrMLDMgFEpqIrkill 393 (629)
T KOG0336|consen 317 YSYN-GLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMD--NVINLASITYLVLDEADRMLDMGFEPQIRKILL 393 (629)
T ss_pred hhhc-CcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhc--CeeeeeeeEEEEecchhhhhcccccHHHHHHhh
Confidence 3322 66555555543322 22 234789999999999888765 455688999999999997654 78888777665
Q ss_pred HHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHh
Q 043190 834 RMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAIC 912 (1492)
Q Consensus 834 ~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 912 (1492)
-+ .++.+.++.|||.|. ...++.-.-..+.-+++-.-..-.+ ...................-..+.
T Consensus 394 di-------RPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~------~sVkQ~i~v~~d~~k~~~~~~f~~ 460 (629)
T KOG0336|consen 394 DI-------RPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAV------KSVKQNIIVTTDSEKLEIVQFFVA 460 (629)
T ss_pred hc-------CCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeee------eeeeeeEEecccHHHHHHHHHHHH
Confidence 44 468899999999987 4555543322222222111111000 000111111100000111223345
Q ss_pred hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 913 THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 913 ~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
..+...++||||.++..|..+...++- -++....+||+-.+.||+.
T Consensus 461 ~ms~ndKvIiFv~~K~~AD~LSSd~~l----------------------------------~gi~~q~lHG~r~Q~DrE~ 506 (629)
T KOG0336|consen 461 NMSSNDKVIIFVSRKVMADHLSSDFCL----------------------------------KGISSQSLHGNREQSDREM 506 (629)
T ss_pred hcCCCceEEEEEechhhhhhccchhhh----------------------------------cccchhhccCChhhhhHHH
Confidence 567888999999999887776655532 1455677899999999999
Q ss_pred HHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 993 VEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 993 v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
.++.|++|+++|||||+++++|+|+|++++|++ || ++..+.+|+||+||+||+| +.|+++.+....+.
T Consensus 507 al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N----yD------FP~nIeeYVHRvGrtGRaG--r~G~sis~lt~~D~ 574 (629)
T KOG0336|consen 507 ALEDFKSGEVRILVATDLASRGLDVPDITHVYN----YD------FPRNIEEYVHRVGRTGRAG--RTGTSISFLTRNDW 574 (629)
T ss_pred HHHhhhcCceEEEEEechhhcCCCchhcceeec----cC------CCccHHHHHHHhcccccCC--CCcceEEEEehhhH
Confidence 999999999999999999999999999999998 44 4445999999999999999 99999999999887
Q ss_pred HHHHHhh
Q 043190 1073 SFYKKFL 1079 (1492)
Q Consensus 1073 ~~~~~~l 1079 (1492)
...+.++
T Consensus 575 ~~a~eLI 581 (629)
T KOG0336|consen 575 SMAEELI 581 (629)
T ss_pred HHHHHHH
Confidence 7766554
No 54
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=3.2e-38 Score=361.52 Aligned_cols=394 Identities=26% Similarity=0.438 Sum_probs=295.2
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
|+|. +.|+|++++..+- ++++++|+|.|.+|||.+|..+|...++. ..+++|..|-+||.+|.|+++...|+
T Consensus 126 YPF~-LDpFQ~~aI~Cid-r~eSVLVSAHTSAGKTVVAeYAIA~sLr~--kQRVIYTSPIKALSNQKYREl~~EF~---- 197 (1041)
T KOG0948|consen 126 YPFT-LDPFQSTAIKCID-RGESVLVSAHTSAGKTVVAEYAIAMSLRE--KQRVIYTSPIKALSNQKYRELLEEFK---- 197 (1041)
T ss_pred CCcc-cCchHhhhhhhhc-CCceEEEEeecCCCcchHHHHHHHHHHHh--cCeEEeeChhhhhcchhHHHHHHHhc----
Confidence 3554 8999999999874 88999999999999999999999999886 79999999999999999999988885
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-CCCccHHHHHHHHHHHhhhcc
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~~~g~~~~~i~~~l~~~~~~~ 842 (1492)
.|+..|||.+.+ ..+..+|+|.|.|.+++-+ +...++.+.+||+||+|.|- .+||.+||.-+-. +
T Consensus 198 -DVGLMTGDVTIn----P~ASCLVMTTEILRsMLYR--GSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIl-------l 263 (1041)
T KOG0948|consen 198 -DVGLMTGDVTIN----PDASCLVMTTEILRSMLYR--GSEVMREVAWVIFDEIHYMRDKERGVVWEETIIL-------L 263 (1041)
T ss_pred -ccceeecceeeC----CCCceeeeHHHHHHHHHhc--cchHhheeeeEEeeeehhccccccceeeeeeEEe-------c
Confidence 467899998765 4678999999999888877 44558899999999999885 4899999965432 3
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCC-cceeEecCCCccccCcEEEEeccCCc--c-------------ccccccc----
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVG-EIGLFNFKPSVRPVPLEVHIQGYPGK--F-------------YCPRMNS---- 902 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~-~~~~~~~~~~~r~~~l~~~~~~~~~~--~-------------~~~~~~~---- 902 (1492)
+.+.|.|++|||+||+.++++|+.-- .......-.++||.|+...+....+. + +...+..
T Consensus 264 P~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~ 343 (1041)
T KOG0948|consen 264 PDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKA 343 (1041)
T ss_pred cccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhcc
Confidence 67999999999999999999998532 22233335688999998765321111 0 0000000
Q ss_pred -----------------------cChhHHHHHhh--cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHH
Q 043190 903 -----------------------MNKPAYAAICT--HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957 (1492)
Q Consensus 903 -----------------------~~~~~~~~l~~--~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 957 (1492)
-...++..+.. .....|+|||+-|+++|+..|..+.+.-.+.+..+... ..-
T Consensus 344 ~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V---~~i 420 (1041)
T KOG0948|consen 344 GESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELV---ETI 420 (1041)
T ss_pred CCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHH---HHH
Confidence 00012222211 13456999999999999999988865432211110000 011
Q ss_pred HHHHHhhcCc--------HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEeccee
Q 043190 958 LQMVLSQVTD--------QNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEY 1029 (1492)
Q Consensus 958 ~~~~~~~~~~--------~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~ 1029 (1492)
....+.++.+ +....++..||++|||||-+--++.|+-.|.+|-+++|+||.+++.|+|.|+.+||+-..+.
T Consensus 421 F~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT~~rK 500 (1041)
T KOG0948|consen 421 FNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFTAVRK 500 (1041)
T ss_pred HHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEeeccc
Confidence 1122223321 34556788999999999999999999999999999999999999999999999999988899
Q ss_pred eeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH-HHHhh-cCCCceeecccccchhhhHHHhhhC
Q 043190 1030 YDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF-YKKFL-YEPFPVESSLRDQLHDHFNAEIVSG 1104 (1492)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~-~~~~l-~~~~pies~l~~~l~~~l~~ei~~~ 1104 (1492)
|||+..+| ++--+|+||.|||||.|.|..|.|++++++..... .+.++ ...-|+.|.++-...-.+|-.-+.+
T Consensus 501 fDG~~fRw--issGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLlRvEe 575 (1041)
T KOG0948|consen 501 FDGKKFRW--ISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLLRVEE 575 (1041)
T ss_pred cCCcceee--ecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHHcc
Confidence 99987654 57789999999999999999999999999875443 34444 4456777877765555555433333
No 55
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-37 Score=350.47 Aligned_cols=325 Identities=19% Similarity=0.253 Sum_probs=244.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-----------CCceEEEEcccHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-----------SDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-----------~~~~~l~i~P~r~La~q~~~~ 753 (1492)
++..|+|+|+-+++.+. .|+++++||+||||||.+|++|++..+... ..+.+++++|||+||.|++++
T Consensus 93 ~~~~ptpvQk~sip~i~-~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ne 171 (482)
T KOG0335|consen 93 GYTKPTPVQKYSIPIIS-GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNE 171 (482)
T ss_pred cccCCCcceeeccceee-cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHH
Confidence 89999999999999997 899999999999999999999999987654 147999999999999999999
Q ss_pred HHHHhhhccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC--CCccHH
Q 043190 754 WKDRLVSQLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA--ERGPIL 828 (1492)
Q Consensus 754 ~~~~~~~~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~--~~g~~~ 828 (1492)
.++ |....+.++....|+..... ....+++|+|||||+|.+++.. ....+++++++|+|||+.|.+ .+++.+
T Consensus 172 a~k-~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~--g~i~l~~~k~~vLDEADrMlD~mgF~p~I 248 (482)
T KOG0335|consen 172 ARK-FSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIER--GKISLDNCKFLVLDEADRMLDEMGFEPQI 248 (482)
T ss_pred HHh-hcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhc--ceeehhhCcEEEecchHHhhhhccccccH
Confidence 887 44444777777777744322 2335899999999999998886 444588999999999997754 799999
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCC-cce--eEecCCCccccCcEEEEeccCCccccccccccC
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVG-EIG--LFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMN 904 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~-~~~--~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~ 904 (1492)
+.++....... ....|.+++|||.|. ...++..+-.. ..- +-.+... ...+...+..+.. ....
T Consensus 249 r~iv~~~~~~~---~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~--~~ni~q~i~~V~~-------~~kr 316 (482)
T KOG0335|consen 249 RKIVEQLGMPP---KNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGST--SENITQKILFVNE-------MEKR 316 (482)
T ss_pred HHHhcccCCCC---ccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccc--cccceeEeeeecc-------hhhH
Confidence 99887664221 347889999999976 22233322211 110 0011111 1111111111111 1111
Q ss_pred hhHHHHHhhcC---CCC-----CeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhcc
Q 043190 905 KPAYAAICTHS---PTK-----PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQF 976 (1492)
Q Consensus 905 ~~~~~~l~~~~---~~~-----~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 976 (1492)
..++..+.... ..+ .++|||.+++.|..++..|... ++
T Consensus 317 ~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~----------------------------------~~ 362 (482)
T KOG0335|consen 317 SKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN----------------------------------GY 362 (482)
T ss_pred HHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC----------------------------------CC
Confidence 22233332221 223 7999999999999999877442 56
Q ss_pred ceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC--HHHHHHhhcccCC
Q 043190 977 GIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP--ITDILQMMGRAGR 1054 (1492)
Q Consensus 977 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~--~~~~~Qr~GRagR 1054 (1492)
....+||..++.+|...++.|++|.+.+||||++++||+|+|+|++||+ +|+| ..+|+||+||+||
T Consensus 363 ~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn------------yDmP~d~d~YvHRIGRTGR 430 (482)
T KOG0335|consen 363 PAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN------------YDMPADIDDYVHRIGRTGR 430 (482)
T ss_pred CceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE------------eecCcchhhHHHhcccccc
Confidence 7788999999999999999999999999999999999999999999998 5555 8899999999999
Q ss_pred CCCCCceEEEEEecCCcHH
Q 043190 1055 PQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1055 ~g~~~~G~~i~l~~~~~~~ 1073 (1492)
.| ..|.++.|+......
T Consensus 431 ~G--n~G~atsf~n~~~~~ 447 (482)
T KOG0335|consen 431 VG--NGGRATSFFNEKNQN 447 (482)
T ss_pred CC--CCceeEEEeccccch
Confidence 98 899999999855533
No 56
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.4e-37 Score=340.00 Aligned_cols=341 Identities=21% Similarity=0.277 Sum_probs=258.7
Q ss_pred chhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC------CCceEEEEcccHHHHH
Q 043190 677 NNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ------SDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 677 ~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~------~~~~~l~i~P~r~La~ 748 (1492)
..++.++. .|.+|+|+|.++++..+ .+++++-.|-||||||-+|++|++.++..+ .++..||++|||+||.
T Consensus 232 kqLm~airk~Ey~kptpiq~qalptal-sgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~ 310 (731)
T KOG0339|consen 232 KQLMTAIRKSEYEKPTPIQCQALPTAL-SGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELAS 310 (731)
T ss_pred HHHHHHHhhhhcccCCccccccccccc-ccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHH
Confidence 34455554 68899999999999998 899999999999999999999999877653 5788999999999999
Q ss_pred HHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CC
Q 043190 749 ERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER 824 (1492)
Q Consensus 749 q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~ 824 (1492)
|++.+.++ |++..|+++++++|+.+...+ ...++.|+|||||+|..++.. ....+.+++++|+||++.|-+ .+
T Consensus 311 Qi~~eaKk-f~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vkm--Katn~~rvS~LV~DEadrmfdmGf 387 (731)
T KOG0339|consen 311 QIFSEAKK-FGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKM--KATNLSRVSYLVLDEADRMFDMGF 387 (731)
T ss_pred HHHHHHHH-hhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHh--hcccceeeeEEEEechhhhhcccc
Confidence 99999877 777779999999887664332 125889999999999888875 344588999999999998754 56
Q ss_pred ccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccccccc
Q 043190 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM 903 (1492)
Q Consensus 825 g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 903 (1492)
.+++..|...+ .++.|.+++|||++. .+.+++-+-..+..+...........+...+. .+......
T Consensus 388 e~qVrSI~~hi-------rpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~------V~~s~~~K 454 (731)
T KOG0339|consen 388 EPQVRSIKQHI-------RPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVS------VCPSEEKK 454 (731)
T ss_pred HHHHHHHHhhc-------CCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheee------eccCcHHH
Confidence 66666665544 578999999999975 45555544333333322111111111111111 11111111
Q ss_pred ChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecC
Q 043190 904 NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHA 983 (1492)
Q Consensus 904 ~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~ 983 (1492)
..-+...+......+++|+|+..+..++.++..| ..-++.|..+||
T Consensus 455 l~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~L----------------------------------klk~~~v~llhg 500 (731)
T KOG0339|consen 455 LNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANL----------------------------------KLKGFNVSLLHG 500 (731)
T ss_pred HHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHh----------------------------------ccccceeeeecC
Confidence 1112333445567789999999999999988776 223788999999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEE
Q 043190 984 GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 984 ~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
++.+.+|++++..|+.+...|||+|+++++|+|+|.+..||+ || +--++..+.||+||+||.| ..|.+
T Consensus 501 dkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn----yD------~ardIdththrigrtgRag--~kGva 568 (731)
T KOG0339|consen 501 DKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN----YD------FARDIDTHTHRIGRTGRAG--EKGVA 568 (731)
T ss_pred chhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec----cc------ccchhHHHHHHhhhccccc--cccee
Confidence 999999999999999999999999999999999999999998 44 2225889999999999998 78999
Q ss_pred EEEecCCcHHHHHHhhc
Q 043190 1064 VILVHEPKKSFYKKFLY 1080 (1492)
Q Consensus 1064 i~l~~~~~~~~~~~~l~ 1080 (1492)
|.++++.+.++.-.+.+
T Consensus 569 yTlvTeKDa~fAG~LVn 585 (731)
T KOG0339|consen 569 YTLVTEKDAEFAGHLVN 585 (731)
T ss_pred eEEechhhHHHhhHHHH
Confidence 99999988776554443
No 57
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.6e-36 Score=371.02 Aligned_cols=388 Identities=27% Similarity=0.409 Sum_probs=295.7
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
++|+ |.++|++++..+- .+++|+||||||||||.+++.++...+.. +.+++|++|.+||.+|.+.++..+|+.. .
T Consensus 116 ~~F~-LD~fQ~~a~~~Le-r~esVlV~ApTssGKTvVaeyAi~~al~~--~qrviYTsPIKALsNQKyrdl~~~fgdv-~ 190 (1041)
T COG4581 116 YPFE-LDPFQQEAIAILE-RGESVLVCAPTSSGKTVVAEYAIALALRD--GQRVIYTSPIKALSNQKYRDLLAKFGDV-A 190 (1041)
T ss_pred CCCC-cCHHHHHHHHHHh-CCCcEEEEccCCCCcchHHHHHHHHHHHc--CCceEeccchhhhhhhHHHHHHHHhhhh-h
Confidence 4776 9999999999985 89999999999999999999999998886 6779999999999999999999988754 3
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhcc
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~ 842 (1492)
-.++.+|||.+.+ ..+.++|+|.|.|..++.+. ...+..+..||+||+|.+++ +||.++|.++-.+
T Consensus 191 ~~vGL~TGDv~IN----~~A~clvMTTEILRnMlyrg--~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l------- 257 (1041)
T COG4581 191 DMVGLMTGDVSIN----PDAPCLVMTTEILRNMLYRG--SESLRDIEWVVFDEVHYIGDRERGVVWEEVIILL------- 257 (1041)
T ss_pred hhccceecceeeC----CCCceEEeeHHHHHHHhccC--cccccccceEEEEeeeeccccccchhHHHHHHhc-------
Confidence 3578899998765 57899999999998888874 45688999999999999986 8999999877643
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCCc-ceeEecCCCccccCcEEEEeccCCcc------c---ccc----ccccC----
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGKF------Y---CPR----MNSMN---- 904 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~~-~~~~~~~~~~r~~~l~~~~~~~~~~~------~---~~~----~~~~~---- 904 (1492)
+..+++|+||||+||+.+++.|++... ...+....+.||+|+..++..-..-+ . ... .....
T Consensus 258 P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~ 337 (1041)
T COG4581 258 PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSE 337 (1041)
T ss_pred CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccch
Confidence 568899999999999999999998543 34555677899999987764321000 0 000 00000
Q ss_pred --h---------------------------hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCCh
Q 043190 905 --K---------------------------PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPE 955 (1492)
Q Consensus 905 --~---------------------------~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~ 955 (1492)
. .-..........-|+++|+-|++.|+..+..+...- .....+.
T Consensus 338 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ld-------l~~~~~~ 410 (1041)
T COG4581 338 KVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLD-------LVLTEEK 410 (1041)
T ss_pred hccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccc-------cccCCcH
Confidence 0 000011112344589999999999999998775321 1112222
Q ss_pred HH-HHHH----HhhcC---------cHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcE
Q 043190 956 ED-LQMV----LSQVT---------DQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHL 1021 (1492)
Q Consensus 956 ~~-~~~~----~~~~~---------~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~ 1021 (1492)
+. +... +..+. -..+...+..|+++||+||-+..|..++..|..|.++|++||.+++.|+|.|+.+
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart 490 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART 490 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc
Confidence 22 2222 22222 1345677889999999999999999999999999999999999999999999999
Q ss_pred EEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc--HHHHHHhh-cCCCceeecccccchhhhH
Q 043190 1022 VIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK--KSFYKKFL-YEPFPVESSLRDQLHDHFN 1098 (1492)
Q Consensus 1022 ~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~--~~~~~~~l-~~~~pies~l~~~l~~~l~ 1098 (1492)
+|+.+...||+..+ .+++..+|.||.|||||.|.|..|.++++..+.. ......+. ..+.++.|.+...+.-.+|
T Consensus 491 vv~~~l~K~dG~~~--r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~miln 568 (1041)
T COG4581 491 VVFTSLSKFDGNGH--RWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILN 568 (1041)
T ss_pred eeeeeeEEecCCce--eecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHHHh
Confidence 99999999998765 5679999999999999999999999999954332 22233333 4556777777655444443
No 58
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-36 Score=313.38 Aligned_cols=292 Identities=22% Similarity=0.401 Sum_probs=239.8
Q ss_pred CCCCCHHHHHHHHhCCCCCC-----CCcCCCChhHHHHHhhcccc---eeecCCCCCCh-hHHHHHHHHHHhcCCCCCCc
Q 043190 1197 GPDTSLEVFLHILSGASEYD-----ELPVRHNEDNHNEALSQRVR---FAVDNNRLDDP-HVKANLLFQAHFSRLDLPIS 1267 (1492)
Q Consensus 1197 ~~~~~~~~ll~ils~a~Ef~-----~i~~R~~e~~~l~~l~~~~~---~~~~~~~~~~~-~~K~~lLlqa~l~r~~l~~~ 1267 (1492)
.+.+.+..++.+|+++.||. ++.-|..+.-++-+|.+.++ .+-..+.+..| +.|+.+||+|||+|++++..
T Consensus 8 Tp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~d 87 (520)
T KOG4434|consen 8 TPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESD 87 (520)
T ss_pred CchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChh
Confidence 45667788999999999995 67778888887777776654 22223334444 48999999999999999966
Q ss_pred chHhhHHHHHHhHHHHHHHHHHHHHhc------------CCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHH
Q 043190 1268 DYVTDLKSVLDQSIRIIQAMIDICANS------------GWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGT 1335 (1492)
Q Consensus 1268 ~l~~D~~~il~~~~rl~~a~~~i~~~~------------~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~ 1335 (1492)
.|..|+.+|++.|+||++.|+.+.... ..+.+..|||.|++|++||+|.. .+||+|||||.+..+++
T Consensus 88 tLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqf-kSPLLQLPHitednL~~ 166 (520)
T KOG4434|consen 88 TLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQF-KSPLLQLPHITEDNLQH 166 (520)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHh-cChhhcCCccchHHHHH
Confidence 899999999999999999999987543 13567789999999999999998 99999999999999999
Q ss_pred HHh-CCCCCHHHHhcCCHHHHhhhh---CCchHHHHHHHhcCCCceEEEEEEEeccC------CCCCeEEEEEEEEeccC
Q 043190 1336 LRA-RGISTVQQLLDIPKENLQTVI---GNFPVSRLHQDLQRFPRIQVKLRLQRRDI------DGENSLTLNIRMDKMNS 1405 (1492)
Q Consensus 1336 l~~-~~i~s~~~l~~~~~~~~~~~l---~~~~~~~i~~~~~~~P~i~i~~~~~~~~~------~~~~~~~l~v~l~~~~~ 1405 (1492)
+.+ +.|+|++||+.+.++.++.+| ++...++++.+++++|.+.|+++.++.+. ..|..+|++|+++|...
T Consensus 167 ~~KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl~R~~l 246 (520)
T KOG4434|consen 167 LRKKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTLRRSRL 246 (520)
T ss_pred HhhhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEEEeccc
Confidence 976 459999999999988888774 57789999999999999999888877664 57889999999998310
Q ss_pred C--------------------CCCCc------------------------------------------------------
Q 043190 1406 W--------------------KNTSR------------------------------------------------------ 1411 (1492)
Q Consensus 1406 ~--------------------~~~~~------------------------------------------------------ 1411 (1492)
. +.+..
T Consensus 247 ~d~~e~~~~d~~k~paedG~~de~n~ea~g~~~eaaa~~~~~~vKK~kpw~K~Kpk~~kkpaq~Q~~qK~v~~~aas~at 326 (520)
T KOG4434|consen 247 IDPQEAGLADQYKKPAEDGGDDENNLEASGAPEEAAATVEEEEVKKRKPWEKNKPKQKKKPAQGQGQQKFVKKNAASPAT 326 (520)
T ss_pred cChHhhhhhhhhhCchhhCCCcccchhccCChhhhccccchhhhhhcCchhhcCCCcccCccccchhhhhcccccCChhh
Confidence 0 00000
Q ss_pred --------------------------------------------------------------------------cccccC
Q 043190 1412 --------------------------------------------------------------------------AFALRF 1417 (1492)
Q Consensus 1412 --------------------------------------------------------------------------~~~p~~ 1417 (1492)
+|||||
T Consensus 327 ~ka~eeea~~~~sD~E~e~~n~Ds~dees~asd~~~D~e~~~~~ddddd~EWe~lqa~~~kr~~lEtKs~~tHtVh~pyF 406 (520)
T KOG4434|consen 327 EKALEEEAKDKGSDSEEEETNRDSQDEESDASDRDSDREQDEKQDDDDDAEWEELQASIQKRALLETKSKITHTVHSPYF 406 (520)
T ss_pred hhhhHHHhhhcCcchhhhhhcccccccccccCccccchhhccccccccHHHHHHHHHHHHHHHhhhcccccceeeccCCC
Confidence 999999
Q ss_pred CCCccceEEEEEEeCCCCeEEEEE--EeecCCc--ceEEEEecCCCCCcceEEEEEEeCCCCCccEEEEEEEEEecc
Q 043190 1418 PKIKDEAWWLVLGNTNTSELYALK--RISFSDR--LNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEALVEQS 1490 (1492)
Q Consensus 1418 p~~k~e~w~~~v~d~~~~~l~~~~--r~~~~~~--~~~~~~~p~~~~~~~~~~v~~~sd~y~G~D~~~~i~~~v~~~ 1490 (1492)
|..|+|.||++|+|.++..|+.+- -..+... ...+|.+|.. ||.|.|+|++-||||+|+|+..++++.|++-
T Consensus 407 PeEKqEwWW~Yi~drKsrtLlt~PyhV~tL~d~eei~lkF~AP~~-pG~Ytytv~lrSDSYmg~dq~~~lKldV~eA 482 (520)
T KOG4434|consen 407 PEEKQEWWWLYIADRKSRTLLTMPYHVCTLKDTEEIELKFPAPGK-PGNYTYTVFLRSDSYMGLDQIKPLKLDVHEA 482 (520)
T ss_pred cchhhheeeeeeecccccceecchhhhhcccccceeEEeccCCCC-CCceEEEEEEecccccChhhccceeeeeccC
Confidence 999999999999999999998752 2233333 3366778866 6999999999999999999999999999863
No 59
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=334.90 Aligned_cols=441 Identities=19% Similarity=0.195 Sum_probs=323.5
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCc
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~ 775 (1492)
.+..+ ++++.+||.|+||||||+.....+.+.-... .+++.+..|+|-.|..+++++....+..+|..|+... ..
T Consensus 59 il~~v-e~nqvlIviGeTGsGKSTQipQyL~eaG~~~-~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~I---RF 133 (674)
T KOG0922|consen 59 ILYAV-EDNQVLIVIGETGSGKSTQIPQYLAEAGFAS-SGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTI---RF 133 (674)
T ss_pred HHHHH-HHCCEEEEEcCCCCCccccHhHHHHhccccc-CCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEE---Ee
Confidence 44444 4789999999999999999998888865543 4559999999999999999999888777777776543 22
Q ss_pred chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 776 ~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
+......+.|.+.|.|. ++|....+..++++++||+|||| +|....+.++..++++... .++.++|.||||+
T Consensus 134 ed~ts~~TrikymTDG~---LLRE~l~Dp~LskYsvIIlDEAH----ERsl~TDiLlGlLKki~~~-R~~LklIimSATl 205 (674)
T KOG0922|consen 134 EDSTSKDTRIKYMTDGM---LLREILKDPLLSKYSVIILDEAH----ERSLHTDILLGLLKKILKK-RPDLKLIIMSATL 205 (674)
T ss_pred cccCCCceeEEEecchH---HHHHHhcCCccccccEEEEechh----hhhhHHHHHHHHHHHHHhc-CCCceEEEEeeee
Confidence 33333478999999995 55666667889999999999999 7777888888888877653 5678999999998
Q ss_pred CChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHH
Q 043190 856 ANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTAL 935 (1492)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~ 935 (1492)
+++.+.+||+..+. +.-+.|..|+++.+...+...|.... -.....|....+.+.+|||.++.++.+.++.
T Consensus 206 -da~kfS~yF~~a~i----~~i~GR~fPVei~y~~~p~~dYv~a~----~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~ 276 (674)
T KOG0922|consen 206 -DAEKFSEYFNNAPI----LTIPGRTFPVEILYLKEPTADYVDAA----LITVIQIHLTEPPGDILVFLTGQEEIEAACE 276 (674)
T ss_pred -cHHHHHHHhcCCce----EeecCCCCceeEEeccCCchhhHHHH----HHHHHHHHccCCCCCEEEEeCCHHHHHHHHH
Confidence 79999999987442 34466777888777654444443211 1122334445778899999999999999998
Q ss_pred HHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccccc
Q 043190 936 DLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015 (1492)
Q Consensus 936 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gv 1015 (1492)
.|.+....... ....-+.++||.|+.+++..|++.-..|..+|++||++++.++
T Consensus 277 ~l~e~~~~~~~--------------------------~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSl 330 (674)
T KOG0922|consen 277 LLRERAKSLPE--------------------------DCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSL 330 (674)
T ss_pred HHHHHhhhccc--------------------------cCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeE
Confidence 88776433211 0111367899999999999999999999999999999999999
Q ss_pred CCCCcEEEEecc----eeeeCccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCceee
Q 043190 1016 NLPAHLVIIKGT----EYYDGKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVES 1087 (1492)
Q Consensus 1016 dip~~~~VI~~~----~~~~~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies 1087 (1492)
+||++.+||.+. ..|+++.+. ..++|.++..||.|||||.| +|.||.++++.+ |.++..+..|-
T Consensus 331 TI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLYte~~---~~~~~~~~~PE-- 402 (674)
T KOG0922|consen 331 TIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLYTESA---YDKMPLQTVPE-- 402 (674)
T ss_pred EecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEeeeHHH---HhhcccCCCCc--
Confidence 999999999753 568887662 35678999999999999986 999999998755 56666665552
Q ss_pred cccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecC
Q 043190 1088 SLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTE 1167 (1492)
Q Consensus 1088 ~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~ 1167 (1492)
.....|...++...+.|. . |.+ ++.|+ +. +-.+.+..|++.|...|+|+.++
T Consensus 403 I~R~~Ls~~vL~Lkalgi-~---d~l---~F~f~--------------d~-------P~~~~l~~AL~~L~~lgald~~g 454 (674)
T KOG0922|consen 403 IQRVNLSSAVLQLKALGI-N---DPL---RFPFI--------------DP-------PPPEALEEALEELYSLGALDDRG 454 (674)
T ss_pred eeeechHHHHHHHHhcCC-C---Ccc---cCCCC--------------CC-------CChHHHHHHHHHHHhcCcccCcC
Confidence 223345555555544442 1 222 22221 11 11355678999999999997443
Q ss_pred Ccccccc-chhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChh
Q 043190 1168 DTVEPTM-LGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNED 1225 (1492)
Q Consensus 1168 ~~~~~T~-lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~ 1225 (1492)
.. |+ +|+.||.++++|...++++.+-..++ .++++.+++..+ ..++..|..+.
T Consensus 455 ~l---t~p~G~~ma~~Pl~p~lsk~ll~s~~~gc-~~e~l~i~a~Ls-v~~~f~~p~~~ 508 (674)
T KOG0922|consen 455 KL---TSPLGRQMAELPLEPHLSKMLLKSSELGC-SEEILTIAAMLS-VQSVFSRPKDK 508 (674)
T ss_pred Cc---CchHHhhhhhcCCCcchhhhhhhccccCC-cchhhhheeeee-ccceecCccch
Confidence 32 55 99999999999999999987655444 455665555444 44555555443
No 60
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-36 Score=334.70 Aligned_cols=346 Identities=20% Similarity=0.254 Sum_probs=246.9
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC------------CCc--eEE
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ------------SDM--KVV 738 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~------------~~~--~~l 738 (1492)
|+.+.++++- ||..|++||+.++|.+..+..+++..|.||||||++|-+||+..+... ... ..|
T Consensus 188 lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~L 267 (731)
T KOG0347|consen 188 LPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIAL 267 (731)
T ss_pred CCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeE
Confidence 3445555554 999999999999999985558999999999999999999999844321 133 499
Q ss_pred EEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhc---cCCCcEEEECchhhhHhhhcccC-ccccCcccEEEE
Q 043190 739 YIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHS-RNYVKKVGLMIL 814 (1492)
Q Consensus 739 ~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~l~~~~~~-~~~l~~i~liVi 814 (1492)
+++|||+||.|+.+.+.. .....|+++..++|+.....+. ...++|+|+|||+|..++..... -..+++++++|+
T Consensus 268 V~tPTRELa~QV~~Hl~a-i~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVl 346 (731)
T KOG0347|consen 268 VVTPTRELAHQVKQHLKA-IAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVL 346 (731)
T ss_pred EecChHHHHHHHHHHHHH-hccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEE
Confidence 999999999999999877 5556699999999998755432 23789999999999888876433 345789999999
Q ss_pred ecccccCC-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHH----------------------HHHHhcCCcc-
Q 043190 815 DEIHLLGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGD----------------------LADWLGVGEI- 870 (1492)
Q Consensus 815 DEaH~l~~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~----------------------~~~~l~~~~~- 870 (1492)
||+|+|.+ +....+..++..+. -.+.....|.+.+|||+.-..+ +..-+|....
T Consensus 347 DEaDRmvekghF~Els~lL~~L~--e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kp 424 (731)
T KOG0347|consen 347 DEADRMVEKGHFEELSKLLKHLN--EEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKP 424 (731)
T ss_pred ccHHHHhhhccHHHHHHHHHHhh--hhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCC
Confidence 99998754 33334555555543 1344567899999999853110 1111111100
Q ss_pred eeEecCCCccccCcEEEEeccCCccccccccccChh--HHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCc
Q 043190 871 GLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP--AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPR 948 (1492)
Q Consensus 871 ~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~ 948 (1492)
.++...+......- + ......| ....+. +|..+. .-.|++|||||+...+.+++-.|
T Consensus 425 kiiD~t~q~~ta~~---l--~Es~I~C---~~~eKD~ylyYfl~--ryPGrTlVF~NsId~vKRLt~~L----------- 483 (731)
T KOG0347|consen 425 KIIDLTPQSATAST---L--TESLIEC---PPLEKDLYLYYFLT--RYPGRTLVFCNSIDCVKRLTVLL----------- 483 (731)
T ss_pred eeEecCcchhHHHH---H--HHHhhcC---CccccceeEEEEEe--ecCCceEEEechHHHHHHHHHHH-----------
Confidence 11110000000000 0 0000000 000011 111111 23678999999999998888766
Q ss_pred ccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecce
Q 043190 949 QFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTE 1028 (1492)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~ 1028 (1492)
+.++.....+|+.|.+..|...++.|++..-.|||||++++||+|||++.+||+
T Consensus 484 -----------------------~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--- 537 (731)
T KOG0347|consen 484 -----------------------NNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--- 537 (731)
T ss_pred -----------------------hhcCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE---
Confidence 334566778899999999999999999999999999999999999999999998
Q ss_pred eeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhh
Q 043190 1029 YYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFL 1079 (1492)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l 1079 (1492)
|. ++-+..-|+||.||+.|++ ..|..++|+.+.+...|.++.
T Consensus 538 -Yq------VPrtseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~KL~ 579 (731)
T KOG0347|consen 538 -YQ------VPRTSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLKKLC 579 (731)
T ss_pred -ee------cCCccceeEeccccccccc--CCCeEEEEeChHHhHHHHHHH
Confidence 44 3334678999999999998 899999999999988777764
No 61
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.6e-34 Score=367.27 Aligned_cols=441 Identities=17% Similarity=0.165 Sum_probs=281.5
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCc
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~ 775 (1492)
.+..+ .+++.++|+|+||||||+.....++.. .....+.+++..|+|-.|.+.+.++...++..+|..|+.-. ..
T Consensus 82 Il~ai-~~~~VviI~GeTGSGKTTqlPq~lle~-g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~v---rf 156 (1294)
T PRK11131 82 ILEAI-RDHQVVIVAGETGSGKTTQLPKICLEL-GRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKV---RF 156 (1294)
T ss_pred HHHHH-HhCCeEEEECCCCCCHHHHHHHHHHHc-CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceee---cC
Confidence 34444 477899999999999999654334432 22224578888998866666666666666544455444322 12
Q ss_pred chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 776 ~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
+.....+++|+|+|||++...+.. ...++++++|||||||... ...+.++..++.+... .++.|+|+||||+
T Consensus 157 ~~~~s~~t~I~v~TpG~LL~~l~~---d~~Ls~~~~IIIDEAHERs----Ln~DfLLg~Lk~lL~~-rpdlKvILmSATi 228 (1294)
T PRK11131 157 NDQVSDNTMVKLMTDGILLAEIQQ---DRLLMQYDTIIIDEAHERS----LNIDFILGYLKELLPR-RPDLKVIITSATI 228 (1294)
T ss_pred ccccCCCCCEEEEChHHHHHHHhc---CCccccCcEEEecCccccc----cccchHHHHHHHhhhc-CCCceEEEeeCCC
Confidence 222335789999999998777664 3458999999999999421 1122223334433322 2468999999999
Q ss_pred CChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHh--hcCCCCCeeEEecChHHHHHH
Q 043190 856 ANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAIC--THSPTKPVLIFVSSRRQTRLT 933 (1492)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~LIF~~s~~~~~~~ 933 (1492)
+.+.++++++..+ ++... .+..+++..+........... ......+...+. .....+.+|||++++.+++.+
T Consensus 229 -d~e~fs~~F~~ap--vI~V~--Gr~~pVei~y~p~~~~~~~~~-~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~l 302 (1294)
T PRK11131 229 -DPERFSRHFNNAP--IIEVS--GRTYPVEVRYRPIVEEADDTE-RDQLQAIFDAVDELGREGPGDILIFMSGEREIRDT 302 (1294)
T ss_pred -CHHHHHHHcCCCC--EEEEc--CccccceEEEeecccccchhh-HHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHH
Confidence 4678888886433 22222 233444443332211100000 000011111111 124568899999999999999
Q ss_pred HHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 043190 934 ALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013 (1492)
Q Consensus 934 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~ 1013 (1492)
+..|.+.. .....|..+||+|++++|..+++. .|..+|||||+++++
T Consensus 303 ae~L~~~~-------------------------------~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEt 349 (1294)
T PRK11131 303 ADALNKLN-------------------------------LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAET 349 (1294)
T ss_pred HHHHHhcC-------------------------------CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhh
Confidence 98885421 012347889999999999999986 588999999999999
Q ss_pred ccCCCCcEEEEecc----eeeeCccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCce
Q 043190 1014 GVNLPAHLVIIKGT----EYYDGKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPV 1085 (1492)
Q Consensus 1014 Gvdip~~~~VI~~~----~~~~~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pi 1085 (1492)
|||+|++++||+.. ..||+..+. ..++|.++|.||+|||||.+ +|.||.++++.+. ..+. ..+.
T Consensus 350 SITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte~d~---~~~~--~~~~ 421 (1294)
T PRK11131 350 SLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSEDDF---LSRP--EFTD 421 (1294)
T ss_pred ccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCHHHH---Hhhh--cccC
Confidence 99999999999853 467776541 12356789999999999984 8999999987553 3322 1222
Q ss_pred eecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCcee
Q 043190 1086 ESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKM 1165 (1492)
Q Consensus 1086 es~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~ 1165 (1492)
..-+...|...++.....| +.+. .+| .| +++. -.+.|.+++..|.+.|+|+.
T Consensus 422 PEIlR~~L~~viL~lk~lg-l~di---~~F---~f-------------ldpP--------~~~~i~~al~~L~~LgAld~ 473 (1294)
T PRK11131 422 PEILRTNLASVILQMTALG-LGDI---AAF---PF-------------VEAP--------DKRNIQDGVRLLEELGAITT 473 (1294)
T ss_pred CccccCCHHHHHHHHHHcC-CCCc---cee---eC-------------CCCC--------CHHHHHHHHHHHHHCCCCCc
Confidence 2334445555555444443 2221 111 01 1111 13567899999999999976
Q ss_pred cCC--ccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhH
Q 043190 1166 TED--TVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDN 1226 (1492)
Q Consensus 1166 ~~~--~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~ 1226 (1492)
+++ ...+|++|+.+|++|++|..+++++.+.... +..+++.|.|.-+ ..+...|+.+..
T Consensus 474 ~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~-c~~evl~IaA~Ls-v~dpf~~p~~~~ 534 (1294)
T PRK11131 474 DEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHG-CVREVMIITSALS-IQDPRERPMDKQ 534 (1294)
T ss_pred cccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcC-CHHHHHHHHHHHc-CCCcccCCchhH
Confidence 532 3678999999999999999999999876655 4555555444322 234445555443
No 62
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.2e-36 Score=323.57 Aligned_cols=318 Identities=20% Similarity=0.256 Sum_probs=240.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhc---------cCCCceEEEEcccHHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFN---------TQSDMKVVYIAPLKAIVRERMNDWK 755 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~---------~~~~~~~l~i~P~r~La~q~~~~~~ 755 (1492)
|+.+|+|+|.|.+|.++ +|+++|..|-||||||++|.+|++-... .+.++..++|+|+|+||.|+++-+.
T Consensus 189 GI~~PTpIQvQGlPvvL-sGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 189 GIVHPTPIQVQGLPVVL-SGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCCCCceeecCcceEe-ecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 99999999999999999 8999999999999999999999875322 3357899999999999999998777
Q ss_pred HHhhhc-----cCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCcc
Q 043190 756 DRLVSQ-----LGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGP 826 (1492)
Q Consensus 756 ~~~~~~-----~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~ 826 (1492)
..+... ..++...+.|+.+.... ...+.+|+|+||++|.+++.+. ...+.-++++.+|||+++.+ .+..
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK--~~sLd~CRyL~lDEADRmiDmGFEd 345 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKK--IMSLDACRYLTLDEADRMIDMGFED 345 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHh--hccHHHHHHhhhhhHHHHhhccchh
Confidence 654433 12455566676654322 2357899999999998888763 33477889999999997654 6777
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccc---cccc
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCP---RMNS 902 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~---~~~~ 902 (1492)
.+..+++.++ ...|.+++|||+|. ...++. +.-..|+.+.+...+-..-.... ....
T Consensus 346 dir~iF~~FK-------~QRQTLLFSATMP~KIQ~FAk------------SALVKPvtvNVGRAGAAsldViQevEyVkq 406 (610)
T KOG0341|consen 346 DIRTIFSFFK-------GQRQTLLFSATMPKKIQNFAK------------SALVKPVTVNVGRAGAASLDVIQEVEYVKQ 406 (610)
T ss_pred hHHHHHHHHh-------hhhheeeeeccccHHHHHHHH------------hhcccceEEecccccccchhHHHHHHHHHh
Confidence 7777777665 36788999999985 222222 22334444444332221111111 1111
Q ss_pred cChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeec
Q 043190 903 MNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHH 982 (1492)
Q Consensus 903 ~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h 982 (1492)
..+.+|..-+......|+||||..+.++..+.++|.- -+..+..+|
T Consensus 407 EaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLl----------------------------------KGVEavaIH 452 (610)
T KOG0341|consen 407 EAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLL----------------------------------KGVEAVAIH 452 (610)
T ss_pred hhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHH----------------------------------ccceeEEee
Confidence 1222222222334567899999999999988887732 256678899
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC--HHHHHHhhcccCCCCCCCc
Q 043190 983 AGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP--ITDILQMMGRAGRPQYDQH 1060 (1492)
Q Consensus 983 ~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~--~~~~~Qr~GRagR~g~~~~ 1060 (1492)
||-++++|...+++|+.|+-+|||||++++.|+|+|++.+||+ +|+| +.+|+||+||+||.| +.
T Consensus 453 GGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN------------yDMP~eIENYVHRIGRTGRsg--~~ 518 (610)
T KOG0341|consen 453 GGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN------------YDMPEEIENYVHRIGRTGRSG--KT 518 (610)
T ss_pred cCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc------------CCChHHHHHHHHHhcccCCCC--Cc
Confidence 9999999999999999999999999999999999999999998 6676 889999999999988 89
Q ss_pred eEEEEEecCCcH
Q 043190 1061 GKAVILVHEPKK 1072 (1492)
Q Consensus 1061 G~~i~l~~~~~~ 1072 (1492)
|.+..|......
T Consensus 519 GiATTfINK~~~ 530 (610)
T KOG0341|consen 519 GIATTFINKNQE 530 (610)
T ss_pred ceeeeeecccch
Confidence 999999876653
No 63
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.4e-35 Score=330.82 Aligned_cols=457 Identities=16% Similarity=0.171 Sum_probs=335.8
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEE
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEM 769 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~ 769 (1492)
+++-.+.+.++- .++.++|.|.||||||++....+.+.-....+.++-+..|+|..|..++.++.+.++..+|..|+..
T Consensus 267 y~ykdell~av~-e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYs 345 (902)
T KOG0923|consen 267 YPYKDELLKAVK-EHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYS 345 (902)
T ss_pred hhhHHHHHHHHH-hCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceE
Confidence 455556666664 7899999999999999999888887655545667999999999999999998888766656555442
Q ss_pred cCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEE
Q 043190 770 TGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFI 849 (1492)
Q Consensus 770 ~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii 849 (1492)
. ..+.....++-|-++|.|+| +|.......|.++++||||||| +|....+.++..++.+.. ..++.+++
T Consensus 346 I---RFEdcTSekTvlKYMTDGmL---lREfL~epdLasYSViiiDEAH----ERTL~TDILfgLvKDIar-~RpdLKll 414 (902)
T KOG0923|consen 346 I---RFEDCTSEKTVLKYMTDGML---LREFLSEPDLASYSVIIVDEAH----ERTLHTDILFGLVKDIAR-FRPDLKLL 414 (902)
T ss_pred E---EeccccCcceeeeeecchhH---HHHHhccccccceeEEEeehhh----hhhhhhhHHHHHHHHHHh-hCCcceEE
Confidence 1 22222334677899999964 4555566779999999999999 666667777777766654 35799999
Q ss_pred EEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHH
Q 043190 850 GLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQ 929 (1492)
Q Consensus 850 ~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~ 929 (1492)
.+|||+ +++.+..||+..+ +| .-+.|..|+.+.+..-+...|..... .....|....+.+.+|||.....+
T Consensus 415 IsSAT~-DAekFS~fFDdap--IF--~iPGRRyPVdi~Yt~~PEAdYldAai----~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 415 ISSATM-DAEKFSAFFDDAP--IF--RIPGRRYPVDIFYTKAPEADYLDAAI----VTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred eecccc-CHHHHHHhccCCc--EE--eccCcccceeeecccCCchhHHHHHH----hhheeeEeccCCccEEEEeccHHH
Confidence 999998 8999999998665 33 44566677777665555544432111 011223334677999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecc
Q 043190 930 TRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTS 1009 (1492)
Q Consensus 930 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~ 1009 (1492)
.+.+...|.+.+..-+. .....-+.++|+.|+.+.+..|++.-..|..+|++||+
T Consensus 486 IEt~~e~l~~~~~~LGs-------------------------ki~eliv~PiYaNLPselQakIFePtP~gaRKVVLATN 540 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGS-------------------------KIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATN 540 (902)
T ss_pred HHHHHHHHHHHHHHhcc-------------------------ccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeec
Confidence 88887777554322111 11134578899999999999999999999999999999
Q ss_pred ccccccCCCCcEEEEecc----eeeeCccC----ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcC
Q 043190 1010 TLAWGVNLPAHLVIIKGT----EYYDGKTK----RYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1010 ~l~~Gvdip~~~~VI~~~----~~~~~~~~----~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~ 1081 (1492)
+++.+++|+++.+||... ..|+++.+ ...++|.++..||+|||||.| +|.|+.+++. ..|.+.+..
T Consensus 541 IAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRLYt~---~aY~~eLE~ 614 (902)
T KOG0923|consen 541 IAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRLYTA---WAYEHELEE 614 (902)
T ss_pred chhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEeech---hhhhhhhcc
Confidence 999999999999999643 34677665 235678999999999999997 9999999875 335555543
Q ss_pred CCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCC
Q 043190 1082 PFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSG 1161 (1492)
Q Consensus 1082 ~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~ 1161 (1492)
.++.......|...++...+.| ..|.++| .|+ ++.. .+.+..+|+.|...|
T Consensus 615 -~t~PEIqRtnL~nvVL~LkSLG----I~Dl~~F---dFm-------------DpPp--------~etL~~aLE~LyaLG 665 (902)
T KOG0923|consen 615 -MTVPEIQRTNLGNVVLLLKSLG----IHDLIHF---DFL-------------DPPP--------TETLLKALEQLYALG 665 (902)
T ss_pred -CCCcceeeccchhHHHHHHhcC----cchhccc---ccC-------------CCCC--------hHHHHHHHHHHHHhh
Confidence 2333444566777777666666 2233322 221 1111 244668999999999
Q ss_pred CceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHh
Q 043190 1162 CVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEAL 1231 (1492)
Q Consensus 1162 ~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l 1231 (1492)
++... .++|.+|+.|+.||++|..++++..+-+-. +.++++.|.+..+.+..+..|+.+....+.-
T Consensus 666 ALn~~---GeLTk~GrrMaEfP~dPmlsKmi~as~ky~-cs~EiitiaamlS~~~svfyrpk~~~v~ad~ 731 (902)
T KOG0923|consen 666 ALNHL---GELTKLGRRMAEFPVDPMLSKMIVASEKYK-CSEEIITIAAMLSVGASVFYRPKDKQVHADN 731 (902)
T ss_pred ccccc---cchhhhhhhhhhcCCCHHHHhHHhhhcccc-chHHHHHHHHHHhcCchheecchhhhhhhhh
Confidence 99654 456999999999999999999999776555 4478999999999999999999876555443
No 64
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-35 Score=325.03 Aligned_cols=349 Identities=22% Similarity=0.302 Sum_probs=242.3
Q ss_pred CCCCCCHHHHHHHHhhhc--------CCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYH--------TDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDW 754 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~--------~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~ 754 (1492)
+++.+.|+|.++++.++. ..+++.|.||||||||++|.+||++.+... +.-++++|+|+++|+.|++..|
T Consensus 156 ~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f 235 (620)
T KOG0350|consen 156 AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTF 235 (620)
T ss_pred hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHH
Confidence 788999999999998852 257999999999999999999999998764 2458999999999999999999
Q ss_pred HHHhhhccCCEEEEEcCCCCcchhc--------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC-Cc
Q 043190 755 KDRLVSQLGKEMVEMTGDYTPDLMA--------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-RG 825 (1492)
Q Consensus 755 ~~~~~~~~g~~v~~~~g~~~~~~~~--------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~-~g 825 (1492)
.+ +....|+.|+.+.|.-+..... ....||+|+|||+|.+.+++. ....|++++++||||||++.+. +.
T Consensus 236 ~~-~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~-k~f~Lk~LrfLVIDEADRll~qsfQ 313 (620)
T KOG0350|consen 236 KR-LNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNT-KSFDLKHLRFLVIDEADRLLDQSFQ 313 (620)
T ss_pred HH-hccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCC-CCcchhhceEEEechHHHHHHHHHH
Confidence 87 4444599999999865543221 124599999999998888863 3456899999999999987542 22
Q ss_pred cHHHHHHHHHHHh---------hh------------------ccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCC
Q 043190 826 PILEVIVSRMRYI---------SS------------------QTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKP 877 (1492)
Q Consensus 826 ~~~~~i~~~l~~~---------~~------------------~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~ 877 (1492)
..+..+...++.. .. ...++...+.+|||+.. +..+.++ ....+.++....
T Consensus 314 ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l-~l~~Prl~~v~~ 392 (620)
T KOG0350|consen 314 EWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDL-TLHIPRLFHVSK 392 (620)
T ss_pred HHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhh-hcCCCceEEeec
Confidence 2222222222110 00 00122234556666644 3333332 111111111100
Q ss_pred CccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHH
Q 043190 878 SVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957 (1492)
Q Consensus 878 ~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 957 (1492)
|......+...-...++.....+.......+....+..++|+|+++...+.+++..|.-....
T Consensus 393 ---~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~-------------- 455 (620)
T KOG0350|consen 393 ---PLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCS-------------- 455 (620)
T ss_pred ---ccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhcc--------------
Confidence 000000000000111111112223333344445566789999999999999999877533221
Q ss_pred HHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCcc
Q 043190 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRY 1037 (1492)
Q Consensus 958 ~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~ 1037 (1492)
....+..+.|+++...|...++.|..|.+++||||++++||+|+.+++.||+ ||++
T Consensus 456 ----------------~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN----Yd~P---- 511 (620)
T KOG0350|consen 456 ----------------DNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN----YDPP---- 511 (620)
T ss_pred ----------------ccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee----cCCC----
Confidence 2345566899999999999999999999999999999999999999999999 6643
Q ss_pred ccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcC
Q 043190 1038 VDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1038 ~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~ 1081 (1492)
.+..+|+||+||++|+| +.|.|+.+....+...+.+++..
T Consensus 512 --~~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 512 --ASDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred --chhhHHHHhhccccccc--CCceEEEeeccccchHHHHHHHH
Confidence 35779999999999999 89999999999988888888754
No 65
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-35 Score=309.38 Aligned_cols=354 Identities=18% Similarity=0.241 Sum_probs=247.2
Q ss_pred cccCCCCCccccccCchhHhhhc--CCCCCCHHHHHHHHhhh-cCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceE
Q 043190 662 TELLDLKPLPVTALGNNIYEALY--NFSHFNPIQTQIFHILY-HTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKV 737 (1492)
Q Consensus 662 ~~l~~l~~~~~~~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~-~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~ 737 (1492)
+++-+...+..-.|.++.++.+| +|..|+.+|..++|-++ +..+|+|..+..|+|||.+|.+.||.+.... ..+++
T Consensus 84 sPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~ 163 (477)
T KOG0332|consen 84 SPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQC 163 (477)
T ss_pred CCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCc
Confidence 33444444444456678888888 99999999999999987 3457999999999999999999999876542 35889
Q ss_pred EEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecc
Q 043190 738 VYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEI 817 (1492)
Q Consensus 738 l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEa 817 (1492)
++++|+|+||.|+.+.+.+ .+++.+++......+...........+|+++||+.+.+++.+.. ...+..++.+|+|||
T Consensus 164 iCLaPtrELA~Q~~eVv~e-MGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk-~id~~kikvfVlDEA 241 (477)
T KOG0332|consen 164 ICLAPTRELAPQTGEVVEE-MGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLK-CIDLEKIKVFVLDEA 241 (477)
T ss_pred eeeCchHHHHHHHHHHHHH-hcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHH-hhChhhceEEEecch
Confidence 9999999999999988876 56554555555444332222233457999999999877777632 234788999999999
Q ss_pred cccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccc
Q 043190 818 HLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFY 896 (1492)
Q Consensus 818 H~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 896 (1492)
+.+.+.+|..=. ..++.. ..++..|++++|||... ...++.-+--+. .......+ +..+..+.. .+
T Consensus 242 D~Mi~tqG~~D~--S~rI~~---~lP~~~QllLFSATf~e~V~~Fa~kivpn~-n~i~Lk~e------el~L~~IkQ-ly 308 (477)
T KOG0332|consen 242 DVMIDTQGFQDQ--SIRIMR---SLPRNQQLLLFSATFVEKVAAFALKIVPNA-NVIILKRE------ELALDNIKQ-LY 308 (477)
T ss_pred hhhhhccccccc--chhhhh---hcCCcceEEeeechhHHHHHHHHHHhcCCC-ceeeeehh------hccccchhh-he
Confidence 976544432211 112221 23568999999999854 223333221111 11110000 011111111 11
Q ss_pred cccccccChhHHHHH---hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHH
Q 043190 897 CPRMNSMNKPAYAAI---CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQT 973 (1492)
Q Consensus 897 ~~~~~~~~~~~~~~l---~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 973 (1492)
... ......+..+ .....-++.||||.|++.+..++..+...
T Consensus 309 v~C--~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~--------------------------------- 353 (477)
T KOG0332|consen 309 VLC--ACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE--------------------------------- 353 (477)
T ss_pred eec--cchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc---------------------------------
Confidence 110 0111123332 22344578999999999999999888542
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccC
Q 043190 974 LQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAG 1053 (1492)
Q Consensus 974 ~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRag 1053 (1492)
++.|..+||.|..++|..+.+.|+.|.-+|||+|++.+||+|++.+.+||+ ||-+....-.-..+.|+||+||+|
T Consensus 354 -Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvN----ydlP~~~~~~pD~etYlHRiGRtG 428 (477)
T KOG0332|consen 354 -GHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVN----YDLPVKYTGEPDYETYLHRIGRTG 428 (477)
T ss_pred -CceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEe----cCCccccCCCCCHHHHHHHhcccc
Confidence 778999999999999999999999999999999999999999999999998 665543222224889999999999
Q ss_pred CCCCCCceEEEEEecCCcH
Q 043190 1054 RPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1054 R~g~~~~G~~i~l~~~~~~ 1072 (1492)
|-| +.|.++.|+...+.
T Consensus 429 RFG--kkG~a~n~v~~~~s 445 (477)
T KOG0332|consen 429 RFG--KKGLAINLVDDKDS 445 (477)
T ss_pred ccc--ccceEEEeecccCc
Confidence 966 99999999987653
No 66
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.8e-33 Score=361.51 Aligned_cols=441 Identities=17% Similarity=0.145 Sum_probs=287.7
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCc
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~ 775 (1492)
.+...+.+++.++|+|+||||||+.....++..-. ...++|++..|+|..|..++.++.+.++..+|..|+.. ...
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~-~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~---vR~ 149 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTTQLPKICLELGR-GSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK---VRF 149 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCC-CCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE---EcC
Confidence 34444457889999999999999987666655321 23468889999999999999988887765555555432 222
Q ss_pred chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 776 ~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
+.....+++|.|+|+|.|...+.. +..++++++|||||+|. |....+.++..++.+... .++.|+|+||||+
T Consensus 150 ~~~~s~~T~I~~~TdGiLLr~l~~---d~~L~~~~~IIIDEaHE----RsL~~D~LL~lLk~il~~-rpdLKlIlmSATl 221 (1283)
T TIGR01967 150 HDQVSSNTLVKLMTDGILLAETQQ---DRFLSRYDTIIIDEAHE----RSLNIDFLLGYLKQLLPR-RPDLKIIITSATI 221 (1283)
T ss_pred CcccCCCceeeeccccHHHHHhhh---CcccccCcEEEEcCcch----hhccchhHHHHHHHHHhh-CCCCeEEEEeCCc
Confidence 223335789999999988666543 45689999999999993 222333444444444322 3578999999999
Q ss_pred CChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhh--cCCCCCeeEEecChHHHHHH
Q 043190 856 ANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICT--HSPTKPVLIFVSSRRQTRLT 933 (1492)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LIF~~s~~~~~~~ 933 (1492)
+.+.++++++..+ ++.. ..+..|++..+.......... .......+...+.. ....+.+|||++++++++.+
T Consensus 222 -d~~~fa~~F~~ap--vI~V--~Gr~~PVev~Y~~~~~~~~~~-~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l 295 (1283)
T TIGR01967 222 -DPERFSRHFNNAP--IIEV--SGRTYPVEVRYRPLVEEQEDD-DLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDA 295 (1283)
T ss_pred -CHHHHHHHhcCCC--EEEE--CCCcccceeEEecccccccch-hhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHH
Confidence 5688999886543 2222 234444544433211100000 00000111111211 12458999999999999999
Q ss_pred HHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 043190 934 ALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013 (1492)
Q Consensus 934 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~ 1013 (1492)
+..|.+... .+..+..+||+|+.++|..+++.+ +..+|||||+++++
T Consensus 296 ~~~L~~~~~-------------------------------~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEt 342 (1283)
T TIGR01967 296 AEILRKRNL-------------------------------RHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAET 342 (1283)
T ss_pred HHHHHhcCC-------------------------------CCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHh
Confidence 988754210 124588999999999999997654 34799999999999
Q ss_pred ccCCCCcEEEEecc----eeeeCccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCce
Q 043190 1014 GVNLPAHLVIIKGT----EYYDGKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPV 1085 (1492)
Q Consensus 1014 Gvdip~~~~VI~~~----~~~~~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pi 1085 (1492)
|+|+|++++||+.. ..||+..+. ..++|.++|.||+|||||.| +|.||.++++.+... +... +.
T Consensus 343 SLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~~---~~~~--~~ 414 (1283)
T TIGR01967 343 SLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFNS---RPEF--TD 414 (1283)
T ss_pred ccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHHh---hhhc--cC
Confidence 99999999999853 457766542 13457899999999999986 999999998765432 2211 11
Q ss_pred eecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCcee
Q 043190 1086 ESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKM 1165 (1492)
Q Consensus 1086 es~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~ 1165 (1492)
...+...|...++.....| +.+..+ | .| +++.+ .+.++.++..|...|+|+.
T Consensus 415 PEIlR~~L~~viL~l~~lg-~~di~~---f---~f-------------ldpP~--------~~~i~~A~~~L~~LGAld~ 466 (1283)
T TIGR01967 415 PEILRTNLASVILQMLALR-LGDIAA---F---PF-------------IEAPD--------PRAIRDGFRLLEELGALDD 466 (1283)
T ss_pred cccccccHHHHHHHHHhcC-CCCccc---c---cC-------------CCCCC--------HHHHHHHHHHHHHCCCCCC
Confidence 1233344555554443333 222111 1 00 11111 3567899999999999976
Q ss_pred cCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChh
Q 043190 1166 TEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNED 1225 (1492)
Q Consensus 1166 ~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~ 1225 (1492)
+++...+|++|+.+|.+|++|..+++++.+.... +...++.+.|.-++ .+...|+.+.
T Consensus 467 ~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~g-cl~e~l~IaA~Ls~-~dp~~~p~~~ 524 (1283)
T TIGR01967 467 DEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLG-CLQEVLIIASALSI-QDPRERPMEK 524 (1283)
T ss_pred CCCCccccHHHHHHhhcCCChHHHHHHHHhhhcC-CHHHHHHHHHHHcC-CCcCCCcchh
Confidence 5544678999999999999999999999876655 44556555544333 3444454443
No 67
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-33 Score=320.57 Aligned_cols=456 Identities=17% Similarity=0.185 Sum_probs=326.7
Q ss_pred HHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEc
Q 043190 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMT 770 (1492)
Q Consensus 691 ~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~ 770 (1492)
..+.+.+..+- .++.++|.|.||||||+.....+++.-.. ..+.+-+..|+|..|..+++++...++-.+|..|+...
T Consensus 359 ~~R~~ll~~ir-~n~vvvivgETGSGKTTQl~QyL~edGY~-~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsI 436 (1042)
T KOG0924|consen 359 ACRDQLLSVIR-ENQVVVIVGETGSGKTTQLAQYLYEDGYA-DNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSI 436 (1042)
T ss_pred HHHHHHHHHHh-hCcEEEEEecCCCCchhhhHHHHHhcccc-cCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEE
Confidence 34555565554 78899999999999999988877765332 35789999999999999999999888665566555432
Q ss_pred CCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEE
Q 043190 771 GDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIG 850 (1492)
Q Consensus 771 g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~ 850 (1492)
. .+......+.|-++|.| .++|....+..|.++++||+|||| +|....+.++..++..... ..+.++|.
T Consensus 437 R---FEdvT~~~T~IkymTDG---iLLrEsL~d~~L~kYSviImDEAH----ERslNtDilfGllk~~lar-RrdlKliV 505 (1042)
T KOG0924|consen 437 R---FEDVTSEDTKIKYMTDG---ILLRESLKDRDLDKYSVIIMDEAH----ERSLNTDILFGLLKKVLAR-RRDLKLIV 505 (1042)
T ss_pred E---eeecCCCceeEEEeccc---hHHHHHhhhhhhhheeEEEechhh----hcccchHHHHHHHHHHHHh-hccceEEE
Confidence 1 12222245789999999 456665566779999999999999 6666777777777665443 45899999
Q ss_pred EcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHH
Q 043190 851 LSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQT 930 (1492)
Q Consensus 851 lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~ 930 (1492)
+|||+ +++.++.|||..+. |.-+.|..|+++.+...+...|....- + ....|....+.+.+|||.+.+..+
T Consensus 506 tSATm-~a~kf~nfFgn~p~----f~IpGRTyPV~~~~~k~p~eDYVeaav---k-q~v~Ihl~~~~GdilIfmtGqedi 576 (1042)
T KOG0924|consen 506 TSATM-DAQKFSNFFGNCPQ----FTIPGRTYPVEIMYTKTPVEDYVEAAV---K-QAVQIHLSGPPGDILIFMTGQEDI 576 (1042)
T ss_pred eeccc-cHHHHHHHhCCCce----eeecCCccceEEEeccCchHHHHHHHH---h-hheEeeccCCCCCEEEecCCCcch
Confidence 99998 89999999994332 455778888877666555444432110 0 011122334668899999999988
Q ss_pred HHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccc
Q 043190 931 RLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTST 1010 (1492)
Q Consensus 931 ~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~ 1010 (1492)
+-++..+.+.+...... ..-+..|.++++.|+.+-+.++++.-..|..++||||++
T Consensus 577 E~t~~~i~~~l~ql~~~------------------------~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNI 632 (1042)
T KOG0924|consen 577 ECTCDIIKEKLEQLDSA------------------------PTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNI 632 (1042)
T ss_pred hHHHHHHHHHHHhhhcC------------------------CCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccc
Confidence 88877765543221000 112567899999999999999999999999999999999
Q ss_pred cccccCCCCcEEEEecc----eeeeCccC----ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCC
Q 043190 1011 LAWGVNLPAHLVIIKGT----EYYDGKTK----RYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEP 1082 (1492)
Q Consensus 1011 l~~Gvdip~~~~VI~~~----~~~~~~~~----~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~ 1082 (1492)
++.++++|++.+||... +.|++..+ ..+++|.++..||.|||||.| +|.||.++++.. +...++..+
T Consensus 633 AETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlYTe~a--y~~eml~st 707 (1042)
T KOG0924|consen 633 AETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLYTEDA--YKNEMLPST 707 (1042)
T ss_pred hhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---CcceeeehhhhH--HHhhcccCC
Confidence 99999999999999643 57888766 446788999999999999986 999999987633 334455444
Q ss_pred CceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCC
Q 043190 1083 FPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGC 1162 (1492)
Q Consensus 1083 ~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~ 1162 (1492)
.| .....+|.+.++-....| ++|+.+| .|. +....+.+.+++-.|-..|+
T Consensus 708 vP--EIqRTNl~nvVLlLkslg----V~dll~F---dFm---------------------D~Pped~~~~sly~Lw~LGA 757 (1042)
T KOG0924|consen 708 VP--EIQRTNLSNVVLLLKSLG----VDDLLKF---DFM---------------------DPPPEDNLLNSLYQLWTLGA 757 (1042)
T ss_pred Cc--hhhhcchhhHHHHHHhcC----hhhhhCC---CcC---------------------CCCHHHHHHHHHHHHHHhhc
Confidence 43 334555666665555554 3454433 221 12234567789999999999
Q ss_pred ceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhh
Q 043190 1163 VKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALS 1232 (1492)
Q Consensus 1163 i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~ 1232 (1492)
|...+ .+|++|+-|+.|+++|..+++++.+...+ +..++|.|+|.-+- ..+..|+.|.+.-..++
T Consensus 758 l~~~g---~LT~lG~~MvefpLDP~lsKmll~a~~~G-c~dEilsIvSmLSv-p~VF~rpker~eead~a 822 (1042)
T KOG0924|consen 758 LDNTG---QLTPLGRKMVEFPLDPPLSKMLLMAARMG-CSDEILSIVSMLSV-PAVFYRPKEREEEADAA 822 (1042)
T ss_pred cccCC---ccchhhHHhhhCCCCchHHHHHHHHhccC-cHHHHHHHHHHhcc-cceeeccccchhhhhhH
Confidence 96543 45999999999999999999998765544 45667776665433 55677877765544443
No 68
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.3e-34 Score=336.10 Aligned_cols=332 Identities=20% Similarity=0.339 Sum_probs=253.7
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
..++.+||+..|+|-|.++|..++ +++|+++..|||+||++||.+|.+-. .+-+|+|+|..+|...+.+.+...
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l-~g~d~lvvmPTGgGKSlCyQiPAll~-----~G~TLVVSPLiSLM~DQV~~l~~~ 80 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALL-SGKDTLVVMPTGGGKSLCYQIPALLL-----EGLTLVVSPLISLMKDQVDQLEAA 80 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHH-cCCcEEEEccCCCCcchHhhhHHHhc-----CCCEEEECchHHHHHHHHHHHHHc
Confidence 457888999999999999999999 78999999999999999999998865 579999999999999999887663
Q ss_pred hhhccCCEEEEEcCCCCcchhc-------cCCCcEEEECchhhhH--hhhcccCccccCcccEEEEecccccCCCCccHH
Q 043190 758 LVSQLGKEMVEMTGDYTPDLMA-------LLSADIIISTPEKWDG--ISRNWHSRNYVKKVGLMILDEIHLLGAERGPIL 828 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~--l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~ 828 (1492)
|+.+..+.+..+.+.+. ....++++-+||++.. +++. ..-..+.++||||||+++ .+|..+
T Consensus 81 -----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~----L~~~~i~l~vIDEAHCiS-qWGhdF 150 (590)
T COG0514 81 -----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLEL----LKRLPISLVAIDEAHCIS-QWGHDF 150 (590)
T ss_pred -----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHH----HHhCCCceEEechHHHHh-hcCCcc
Confidence 88888888876544321 1246999999998732 1111 113478899999999994 344444
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChh
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP 906 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 906 (1492)
..-..++..+....+ ++.++++|||-+. ..|+.+-|+.....++..+.......+++.... ....+
T Consensus 151 RP~Y~~lg~l~~~~~-~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~----------~~~~q- 218 (590)
T COG0514 151 RPDYRRLGRLRAGLP-NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKG----------EPSDQ- 218 (590)
T ss_pred CHhHHHHHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcc----------cHHHH-
Confidence 444444444433343 7889999988765 578888888877544442222211111111100 01111
Q ss_pred HHHHHh--hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCC
Q 043190 907 AYAAIC--THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAG 984 (1492)
Q Consensus 907 ~~~~l~--~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~ 984 (1492)
+..+. .....++.||||.||+.++.+|..|... +..++.||||
T Consensus 219 -~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~----------------------------------g~~a~~YHaG 263 (590)
T COG0514 219 -LAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKN----------------------------------GISAGAYHAG 263 (590)
T ss_pred -HHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHC----------------------------------CCceEEecCC
Confidence 11333 2456678999999999999999988442 6789999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 985 LNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 985 l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
|+.++|..++++|..++++|+|||.++++|||.|++++||| |+. +-++++|.|-+|||||.| .+..|+
T Consensus 264 l~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH----~~l------P~s~EsYyQE~GRAGRDG--~~a~ai 331 (590)
T COG0514 264 LSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH----YDL------PGSIESYYQETGRAGRDG--LPAEAI 331 (590)
T ss_pred CCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE----ecC------CCCHHHHHHHHhhccCCC--CcceEE
Confidence 99999999999999999999999999999999999999999 542 335999999999999998 899999
Q ss_pred EEecCCcHHHHHHhhcCCCc
Q 043190 1065 ILVHEPKKSFYKKFLYEPFP 1084 (1492)
Q Consensus 1065 ~l~~~~~~~~~~~~l~~~~p 1084 (1492)
+++.+.+......++....|
T Consensus 332 ll~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 332 LLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred EeeccccHHHHHHHHHhhcc
Confidence 99999998888888877665
No 69
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.6e-33 Score=346.26 Aligned_cols=424 Identities=19% Similarity=0.159 Sum_probs=310.5
Q ss_pred HhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcch
Q 043190 698 HILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL 777 (1492)
Q Consensus 698 ~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~ 777 (1492)
-.+++.++.++|+||||||||+...+.+++... ..++++.++.|+|--|..+++++.+.++..+|..|+... ..+.
T Consensus 59 ~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~i---Rfe~ 134 (845)
T COG1643 59 LKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSI---RFES 134 (845)
T ss_pred HHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEE---Eeec
Confidence 333457899999999999999999999998765 346899999999999999999998888776666665432 2233
Q ss_pred hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 778 MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 778 ~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
....++.|-++|.|.|...+. .+..|+.+++|||||+| +|....+.++..++.+....+.+.|+|.||||+ |
T Consensus 135 ~~s~~Trik~mTdGiLlrei~---~D~~Ls~ys~vIiDEaH----ERSl~tDilLgllk~~~~~rr~DLKiIimSATl-d 206 (845)
T COG1643 135 KVSPRTRIKVMTDGILLREIQ---NDPLLSGYSVVIIDEAH----ERSLNTDILLGLLKDLLARRRDDLKLIIMSATL-D 206 (845)
T ss_pred cCCCCceeEEeccHHHHHHHh---hCcccccCCEEEEcchh----hhhHHHHHHHHHHHHHHhhcCCCceEEEEeccc-C
Confidence 334578999999997655544 46779999999999999 777788888888888777777789999999998 7
Q ss_pred hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHH--hhcCCCCCeeEEecChHHHHHHHH
Q 043190 858 AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI--CTHSPTKPVLIFVSSRRQTRLTAL 935 (1492)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~LIF~~s~~~~~~~a~ 935 (1492)
.++++.+|+..+. +..+.|..|+++.+..-....+. ........+ ......|.+|||.+..++.+.++.
T Consensus 207 ~~rfs~~f~~apv----i~i~GR~fPVei~Y~~~~~~d~~-----l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~ 277 (845)
T COG1643 207 AERFSAYFGNAPV----IEIEGRTYPVEIRYLPEAEADYI-----LLDAIVAAVDIHLREGSGSILVFLPGQREIERTAE 277 (845)
T ss_pred HHHHHHHcCCCCE----EEecCCccceEEEecCCCCcchh-----HHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHH
Confidence 8999999985432 34567778888776433222211 111111222 223557899999999999999998
Q ss_pred HHHH-HHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccc
Q 043190 936 DLIQ-FAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWG 1014 (1492)
Q Consensus 936 ~L~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~G 1014 (1492)
.|.+ ... -...|.++||.|+.+++..+++.-..|+.+|++||+++++|
T Consensus 278 ~L~~~~l~-------------------------------~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETS 326 (845)
T COG1643 278 WLEKAELG-------------------------------DDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETS 326 (845)
T ss_pred HHHhcccc-------------------------------CCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccc
Confidence 8854 100 13568999999999999999999999988999999999999
Q ss_pred cCCCCcEEEEecc----eeeeCccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCcee
Q 043190 1015 VNLPAHLVIIKGT----EYYDGKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVE 1086 (1492)
Q Consensus 1015 vdip~~~~VI~~~----~~~~~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pie 1086 (1492)
++||++++||.+. +.|++..+- ..++|.++..||.|||||.+ +|.||.++++.+ |..+.....|
T Consensus 327 LTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLyse~~---~~~~~~~t~P-- 398 (845)
T COG1643 327 LTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYSEED---FLAFPEFTLP-- 398 (845)
T ss_pred eeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecCHHH---HHhcccCCCh--
Confidence 9999999999764 468877652 24578999999999999985 999999998744 4455444333
Q ss_pred ecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCceec
Q 043190 1087 SSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMT 1166 (1492)
Q Consensus 1087 s~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~ 1166 (1492)
.-+...|...++..-..|.- . +|. .++.++..-...+..++..|...|++..+
T Consensus 399 EIlrtdLs~~vL~l~~~G~~---~-----------------d~~-------~f~fld~P~~~~i~~A~~~L~~LGAld~~ 451 (845)
T COG1643 399 EILRTDLSGLVLQLKSLGIG---Q-----------------DIA-------PFPFLDPPPEAAIQAALTLLQELGALDDS 451 (845)
T ss_pred hhhhcchHHHHHHHHhcCCC---C-----------------Ccc-------cCccCCCCChHHHHHHHHHHHHcCCcCCC
Confidence 33444455444444344421 0 111 11111111234577899999999999766
Q ss_pred CCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCC
Q 043190 1167 EDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGA 1212 (1492)
Q Consensus 1167 ~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a 1212 (1492)
+. +|++|+.||.++++|+.+++...+-. ..+..+.+.+.|.-
T Consensus 452 g~---LT~lG~~ms~lpldprLA~mLl~a~~-~g~~~e~~~Ias~L 493 (845)
T COG1643 452 GK---LTPLGKQMSLLPLDPRLARMLLTAPE-GGCLGEAATIASML 493 (845)
T ss_pred CC---CCHHHHHHHhCCCChHHHHHHHhccc-cCcHHHHHHHHHhh
Confidence 54 69999999999999999999998765 34445555444443
No 70
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.2e-33 Score=358.10 Aligned_cols=314 Identities=20% Similarity=0.286 Sum_probs=230.3
Q ss_pred hHhhhcCCCCCCHHHHHHHHhhhcC-----CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHH
Q 043190 679 IYEALYNFSHFNPIQTQIFHILYHT-----DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 679 ~~~~~~~~~~l~~~Q~~~i~~~~~~-----~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~ 753 (1492)
.+...|+|+ |||+|.+|++.+++. +++.+++||||||||.+|+.|++..+.. +.+++|++||++||.|+++.
T Consensus 443 ~~~~~~~f~-~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--g~qvlvLvPT~~LA~Q~~~~ 519 (926)
T TIGR00580 443 EFEDSFPFE-ETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--GKQVAVLVPTTLLAQQHFET 519 (926)
T ss_pred HHHHhCCCC-CCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--CCeEEEEeCcHHHHHHHHHH
Confidence 355667886 999999999999742 3689999999999999999999988765 68999999999999999999
Q ss_pred HHHHhhhccCCEEEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCcc
Q 043190 754 WKDRLVSQLGKEMVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGP 826 (1492)
Q Consensus 754 ~~~~~~~~~g~~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~ 826 (1492)
+.+.+... ++++..++|........ ..+++|+|+||. ++.+ ...+++++++||||+|+++.
T Consensus 520 f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll~~---~v~f~~L~llVIDEahrfgv---- 587 (926)
T TIGR00580 520 FKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LLQK---DVKFKDLGLLIIDEEQRFGV---- 587 (926)
T ss_pred HHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----HhhC---CCCcccCCEEEeecccccch----
Confidence 99988765 88898898876533211 125799999995 2222 23478999999999997632
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHH-HHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLA-DWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~-~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
.... .++. ...++++++||||+.. ..+. .+.+..+..++...+..| .++...+.... ..
T Consensus 588 ~~~~---~L~~----~~~~~~vL~~SATpip-rtl~~~l~g~~d~s~I~~~p~~R-~~V~t~v~~~~-----------~~ 647 (926)
T TIGR00580 588 KQKE---KLKE----LRTSVDVLTLSATPIP-RTLHMSMSGIRDLSIIATPPEDR-LPVRTFVMEYD-----------PE 647 (926)
T ss_pred hHHH---HHHh----cCCCCCEEEEecCCCH-HHHHHHHhcCCCcEEEecCCCCc-cceEEEEEecC-----------HH
Confidence 2222 2222 2457899999999643 3333 233444433443333222 23333222111 01
Q ss_pred hHHHHH-hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCC
Q 043190 906 PAYAAI-CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAG 984 (1492)
Q Consensus 906 ~~~~~l-~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~ 984 (1492)
.....+ .....+++++||||+++.++.++..|.+.. .+..+..+||+
T Consensus 648 ~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~~--------------------------------p~~~v~~lHG~ 695 (926)
T TIGR00580 648 LVREAIRRELLRGGQVFYVHNRIESIEKLATQLRELV--------------------------------PEARIAIAHGQ 695 (926)
T ss_pred HHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHhC--------------------------------CCCeEEEecCC
Confidence 111112 223457899999999999999887775431 14578999999
Q ss_pred CCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 985 LNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 985 l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
|++++|..+++.|++|+++|||||+++++|+|+|++++||. ++.+ .++.++|.||+||+||.| ..|.|+
T Consensus 696 m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~-----~~gls~l~Qr~GRvGR~g--~~g~ai 764 (926)
T TIGR00580 696 MTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII----ERAD-----KFGLAQLYQLRGRVGRSK--KKAYAY 764 (926)
T ss_pred CCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE----ecCC-----CCCHHHHHHHhcCCCCCC--CCeEEE
Confidence 99999999999999999999999999999999999999886 3322 124778999999999987 899999
Q ss_pred EEecCC
Q 043190 1065 ILVHEP 1070 (1492)
Q Consensus 1065 ~l~~~~ 1070 (1492)
+++.+.
T Consensus 765 ll~~~~ 770 (926)
T TIGR00580 765 LLYPHQ 770 (926)
T ss_pred EEECCc
Confidence 998764
No 71
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.9e-33 Score=305.36 Aligned_cols=335 Identities=19% Similarity=0.260 Sum_probs=240.9
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-------CCceEEEEcccHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-------SDMKVVYIAPLKA 745 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-------~~~~~l~i~P~r~ 745 (1492)
|...+++++- ||+.||-+|+.+||-++ .|+|++..|.||||||.+|++|+++.+... .+..+++++|||+
T Consensus 26 LD~RllkAi~~lG~ekpTlIQs~aIplaL-EgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkE 104 (569)
T KOG0346|consen 26 LDSRLLKAITKLGWEKPTLIQSSAIPLAL-EGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKE 104 (569)
T ss_pred CCHHHHHHHHHhCcCCcchhhhcccchhh-cCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHH
Confidence 5556777765 99999999999999999 788999999999999999999999977542 3678999999999
Q ss_pred HHHHHHHHHHHHhhhcc-CCEEEEEcCCCCcc---hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC
Q 043190 746 IVRERMNDWKDRLVSQL-GKEMVEMTGDYTPD---LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG 821 (1492)
Q Consensus 746 La~q~~~~~~~~~~~~~-g~~v~~~~g~~~~~---~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~ 821 (1492)
||.|++..+.+...... .+++.-+..+.+.. .-....++|+|+||+++..++..... ..+..++++|+||||++.
T Consensus 105 L~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~-~~~~~l~~LVvDEADLll 183 (569)
T KOG0346|consen 105 LAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVL-EYLDSLSFLVVDEADLLL 183 (569)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccc-hhhhheeeEEechhhhhh
Confidence 99999998876332221 23444444333322 22235789999999998877775332 568899999999999875
Q ss_pred CCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccC--cEEEEeccCCccccc
Q 043190 822 AERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVP--LEVHIQGYPGKFYCP 898 (1492)
Q Consensus 822 ~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~--l~~~~~~~~~~~~~~ 898 (1492)
+ +| |+.- |+.+...+++..|.++||||+.+ ...+...+--++ .+..+....-+.+ +...... +.
T Consensus 184 s-fG--Yeed---lk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nP-viLkl~e~el~~~dqL~Qy~v~------cs 250 (569)
T KOG0346|consen 184 S-FG--YEED---LKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNP-VILKLTEGELPNPDQLTQYQVK------CS 250 (569)
T ss_pred h-cc--cHHH---HHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCC-eEEEeccccCCCcccceEEEEE------ec
Confidence 3 22 2222 22333455678899999999975 333444333333 3333333333322 2221111 11
Q ss_pred cccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccce
Q 043190 899 RMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGI 978 (1492)
Q Consensus 899 ~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v 978 (1492)
....-..+|..++..--.+++|||+||.+.|..+-..|.+ .+...
T Consensus 251 -e~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeq----------------------------------FGiks 295 (569)
T KOG0346|consen 251 -EEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQ----------------------------------FGIKS 295 (569)
T ss_pred -cchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHH----------------------------------hCcHh
Confidence 0010112333334444578999999999999888766633 25566
Q ss_pred EeecCCCCHHHHHHHHHHHhcCCceEEEecc-----------------------------------ccccccCCCCcEEE
Q 043190 979 GLHHAGLNDKDRSLVEELFANNKIQVLVCTS-----------------------------------TLAWGVNLPAHLVI 1023 (1492)
Q Consensus 979 ~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~-----------------------------------~l~~Gvdip~~~~V 1023 (1492)
++++|.|+..-|.-+++.|..|-.+++|||+ -.+||||+..+..|
T Consensus 296 ciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~V 375 (569)
T KOG0346|consen 296 CILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNV 375 (569)
T ss_pred hhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeee
Confidence 7899999999999999999999999999998 25689999999999
Q ss_pred EecceeeeCccCccccCC--HHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 1024 IKGTEYYDGKTKRYVDFP--ITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1024 I~~~~~~~~~~~~~~~~~--~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
++ +|+| ...|+||+||++|.+ ++|.++.|+.+.+..
T Consensus 376 lN------------FD~P~t~~sYIHRvGRTaRg~--n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 376 LN------------FDFPETVTSYIHRVGRTARGN--NKGTALSFVSPKEEF 413 (569)
T ss_pred ee------------cCCCCchHHHHHhccccccCC--CCCceEEEecchHHh
Confidence 98 4555 889999999999987 999999999887644
No 72
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=1e-32 Score=349.87 Aligned_cols=319 Identities=22% Similarity=0.348 Sum_probs=219.6
Q ss_pred hhcCCCCCCHHHHHHHHhhhcC-----CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 682 ALYNFSHFNPIQTQIFHILYHT-----DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~~~~~~-----~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
+.++|+ ||++|.++++.+... ..+.+++||||||||++|++|++..+.. +.+++|++||++||.|+++.+++
T Consensus 256 ~~l~f~-lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--g~q~lilaPT~~LA~Q~~~~l~~ 332 (681)
T PRK10917 256 ASLPFE-LTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--GYQAALMAPTEILAEQHYENLKK 332 (681)
T ss_pred HhCCCC-CCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEeccHHHHHHHHHHHHH
Confidence 334775 999999999998742 2489999999999999999999998764 78999999999999999999998
Q ss_pred HhhhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHH
Q 043190 757 RLVSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILE 829 (1492)
Q Consensus 757 ~~~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~ 829 (1492)
.+... |+++..++|+.....+ ....++|+|+||+.+.. ...+++++++||||+|.++... .
T Consensus 333 l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~v~~~~l~lvVIDE~Hrfg~~q----r 400 (681)
T PRK10917 333 LLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-------DVEFHNLGLVIIDEQHRFGVEQ----R 400 (681)
T ss_pred HHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-------cchhcccceEEEechhhhhHHH----H
Confidence 77665 8999999999874322 12258999999986532 2347899999999999874321 1
Q ss_pred HHHHHHHHhhhccCCceEEEEEcCCCCChHHHH-HHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHH
Q 043190 830 VIVSRMRYISSQTERAVRFIGLSTALANAGDLA-DWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAY 908 (1492)
Q Consensus 830 ~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~-~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 908 (1492)
. .+.. ....+++++||||+.. ..++ ...+........-.+..+ .++...+... ......+
T Consensus 401 ~---~l~~----~~~~~~iL~~SATp~p-rtl~~~~~g~~~~s~i~~~p~~r-~~i~~~~~~~----------~~~~~~~ 461 (681)
T PRK10917 401 L---ALRE----KGENPHVLVMTATPIP-RTLAMTAYGDLDVSVIDELPPGR-KPITTVVIPD----------SRRDEVY 461 (681)
T ss_pred H---HHHh----cCCCCCEEEEeCCCCH-HHHHHHHcCCCceEEEecCCCCC-CCcEEEEeCc----------ccHHHHH
Confidence 1 1111 1336789999999743 3332 222222222222112211 1222222110 0011222
Q ss_pred HHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHh-ccceEeecCCCC
Q 043190 909 AAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTL-QFGIGLHHAGLN 986 (1492)
Q Consensus 909 ~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~v~~~h~~l~ 986 (1492)
..+.. ...+++++|||+..++.+.+. +.. .++.. +.+.... +..++.+||+|+
T Consensus 462 ~~i~~~~~~g~q~~v~~~~ie~s~~l~--~~~---------------~~~~~--------~~L~~~~~~~~v~~lHG~m~ 516 (681)
T PRK10917 462 ERIREEIAKGRQAYVVCPLIEESEKLD--LQS---------------AEETY--------EELQEAFPELRVGLLHGRMK 516 (681)
T ss_pred HHHHHHHHcCCcEEEEEcccccccchh--HHH---------------HHHHH--------HHHHHHCCCCcEEEEeCCCC
Confidence 33322 246789999999765443210 000 00000 1111211 367999999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 987 DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 987 ~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
+++|..+++.|++|+++|||||+++++|+|+|++++||. |+++. ++.+.+.||+||+||.| ..|.|+++
T Consensus 517 ~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi----~~~~r-----~gls~lhQ~~GRvGR~g--~~g~~ill 585 (681)
T PRK10917 517 PAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI----ENAER-----FGLAQLHQLRGRVGRGA--AQSYCVLL 585 (681)
T ss_pred HHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE----eCCCC-----CCHHHHHHHhhcccCCC--CceEEEEE
Confidence 999999999999999999999999999999999999997 55432 25788999999999987 89999999
Q ss_pred ecCC
Q 043190 1067 VHEP 1070 (1492)
Q Consensus 1067 ~~~~ 1070 (1492)
++.+
T Consensus 586 ~~~~ 589 (681)
T PRK10917 586 YKDP 589 (681)
T ss_pred ECCC
Confidence 9643
No 73
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=1.3e-32 Score=347.03 Aligned_cols=319 Identities=21% Similarity=0.333 Sum_probs=217.6
Q ss_pred cCCCCCCHHHHHHHHhhhcC-----CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 684 YNFSHFNPIQTQIFHILYHT-----DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~-----~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
++| +||+.|.+|++.++.. ..+.+++||||||||.+|++|++..+.. +.+++|++||++||.|+++.+.+.+
T Consensus 232 lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--g~qvlilaPT~~LA~Q~~~~~~~l~ 308 (630)
T TIGR00643 232 LPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--GYQVALMAPTEILAEQHYNSLRNLL 308 (630)
T ss_pred CCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEECCHHHHHHHHHHHHHHHh
Confidence 378 5999999999998732 1378999999999999999999998764 7899999999999999999999877
Q ss_pred hhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHH
Q 043190 759 VSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVI 831 (1492)
Q Consensus 759 ~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i 831 (1492)
... |+++..++|+.....+ ...+++|+|+||+.+.. ...+++++++||||+|.++... ...+
T Consensus 309 ~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-------~~~~~~l~lvVIDEaH~fg~~q---r~~l 377 (630)
T TIGR00643 309 APL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-------KVEFKRLALVIIDEQHRFGVEQ---RKKL 377 (630)
T ss_pred ccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-------cccccccceEEEechhhccHHH---HHHH
Confidence 665 8999999998765432 12357999999986531 2336899999999999874321 1111
Q ss_pred HHHHHHhhhccCCceEEEEEcCCCCChHHHHH-HhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHH
Q 043190 832 VSRMRYISSQTERAVRFIGLSTALANAGDLAD-WLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAA 910 (1492)
Q Consensus 832 ~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~-~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1492)
.. ... ....+++++||||+.. ..++. ..+.-........+..+ .++........ .....+..
T Consensus 378 ~~----~~~-~~~~~~~l~~SATp~p-rtl~l~~~~~l~~~~i~~~p~~r-~~i~~~~~~~~----------~~~~~~~~ 440 (630)
T TIGR00643 378 RE----KGQ-GGFTPHVLVMSATPIP-RTLALTVYGDLDTSIIDELPPGR-KPITTVLIKHD----------EKDIVYEF 440 (630)
T ss_pred HH----hcc-cCCCCCEEEEeCCCCc-HHHHHHhcCCcceeeeccCCCCC-CceEEEEeCcc----------hHHHHHHH
Confidence 11 110 0125789999999744 22222 11211111111111111 12222221100 01223333
Q ss_pred Hhhc-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHH-HhccceEeecCCCCHH
Q 043190 911 ICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQ-TLQFGIGLHHAGLNDK 988 (1492)
Q Consensus 911 l~~~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~v~~~h~~l~~~ 988 (1492)
+... ..+++++|||+..++.+.+...- .+++. +.+.. ..+..++.+||+|+++
T Consensus 441 i~~~l~~g~q~~v~~~~i~~s~~~~~~~-----------------a~~~~--------~~L~~~~~~~~v~~lHG~m~~~ 495 (630)
T TIGR00643 441 IEEEIAKGRQAYVVYPLIEESEKLDLKA-----------------AEALY--------ERLKKAFPKYNVGLLHGRMKSD 495 (630)
T ss_pred HHHHHHhCCcEEEEEccccccccchHHH-----------------HHHHH--------HHHHhhCCCCcEEEEeCCCCHH
Confidence 3332 45789999999875443220000 00000 01111 1256799999999999
Q ss_pred HHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 989 DRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 989 ~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
+|..+++.|++|+++|||||+++++|||+|++++||. |+++. ++.+.+.||+||+||.| ..|.|++++.
T Consensus 496 eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----~~~~r-----~gls~lhQ~~GRvGR~g--~~g~~il~~~ 564 (630)
T TIGR00643 496 EKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI----EDAER-----FGLSQLHQLRGRVGRGD--HQSYCLLVYK 564 (630)
T ss_pred HHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE----eCCCc-----CCHHHHHHHhhhcccCC--CCcEEEEEEC
Confidence 9999999999999999999999999999999999886 44432 35789999999999987 8999999984
Q ss_pred C
Q 043190 1069 E 1069 (1492)
Q Consensus 1069 ~ 1069 (1492)
.
T Consensus 565 ~ 565 (630)
T TIGR00643 565 N 565 (630)
T ss_pred C
Confidence 3
No 74
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=3.4e-32 Score=335.46 Aligned_cols=397 Identities=15% Similarity=0.119 Sum_probs=250.8
Q ss_pred HHHHHHHHhhhcCCCcEEEecCCCCCchHHHHH---------HHHHHh---c-cCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAEL---------AMLHLF---N-TQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 691 ~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l---------~il~~l---~-~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
.+|.++++.+. .++++++.|+||||||.+... +.+..+ . ...++++++++|||+||.|+..++.+.
T Consensus 167 ~iQ~qil~~i~-~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 167 DVQLKIFEAWI-SRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHH-hCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 58999999988 789999999999999998443 233322 2 223579999999999999999988776
Q ss_pred hhh--ccCCEEEEEcCCCCcc--hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHH
Q 043190 758 LVS--QLGKEMVEMTGDYTPD--LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVS 833 (1492)
Q Consensus 758 ~~~--~~g~~v~~~~g~~~~~--~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~ 833 (1492)
++. ..|..+....|+.... .......+|+|+|++. ....++++++|||||||.+... +.. ++.
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L---------~l~~L~~v~~VVIDEaHEr~~~-~Dl---lL~ 312 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKL---------TLNKLFDYGTVIIDEVHEHDQI-GDI---IIA 312 (675)
T ss_pred hCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcc---------cccccccCCEEEccccccCccc-hhH---HHH
Confidence 543 2356677788877532 1122367999999752 1123789999999999976432 223 333
Q ss_pred HHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCcc-ccCcEEEEeccCCccc--cccccccChhHHH
Q 043190 834 RMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVR-PVPLEVHIQGYPGKFY--CPRMNSMNKPAYA 909 (1492)
Q Consensus 834 ~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r-~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~ 909 (1492)
.++... ....|+++||||++. .+.+.+|++... .+... .+ ..+++........... .............
T Consensus 313 llk~~~---~~~rq~ILmSATl~~dv~~l~~~~~~p~--~I~I~--grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~ 385 (675)
T PHA02653 313 VARKHI---DKIRSLFLMTATLEDDRDRIKEFFPNPA--FVHIP--GGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVT 385 (675)
T ss_pred HHHHhh---hhcCEEEEEccCCcHhHHHHHHHhcCCc--EEEeC--CCcCCCeEEEEeecCcccccchhhhHHHHHHHHH
Confidence 333221 123489999999974 567788886332 22222 22 2344443321110000 0000000111222
Q ss_pred HHhhc--CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCH
Q 043190 910 AICTH--SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLND 987 (1492)
Q Consensus 910 ~l~~~--~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 987 (1492)
.+... ..++++||||+++++|+.++..|.+.. .+..+..+||+|++
T Consensus 386 ~L~~~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~--------------------------------~~~~v~~LHG~Lsq 433 (675)
T PHA02653 386 ALKKYTPPKGSSGIVFVASVSQCEEYKKYLEKRL--------------------------------PIYDFYIIHGKVPN 433 (675)
T ss_pred HHHHhhcccCCcEEEEECcHHHHHHHHHHHHhhc--------------------------------CCceEEeccCCcCH
Confidence 23222 245789999999999999988774321 13568999999997
Q ss_pred HHHHHHHHHH-hcCCceEEEeccccccccCCCCcEEEEecceeeeCc--cCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 988 KDRSLVEELF-ANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGK--TKRYVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 988 ~~R~~v~~~f-~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~--~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
. +++++.| ++|+.+|||||+++++|+|+|++++||+....+.+. .+....+|.++|.||+|||||. .+|.|+
T Consensus 434 ~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~ 508 (675)
T PHA02653 434 I--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYV 508 (675)
T ss_pred H--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEE
Confidence 5 4566676 789999999999999999999999999854322222 1222346899999999999997 489999
Q ss_pred EEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHH
Q 043190 1065 ILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSS 1144 (1492)
Q Consensus 1065 ~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~ 1144 (1492)
.++++.+.. |+...-.+.|...++..-..|. ...++. | +++++
T Consensus 509 rLyt~~~~~----------pI~ri~~~~L~~~vL~lk~~g~-~~~~~~--~------------------ldpP~------ 551 (675)
T PHA02653 509 YFYDLDLLK----------PIKRIDSEFLHNYILYAKYFNL-TLPEDL--F------------------VIPSN------ 551 (675)
T ss_pred EEECHHHhH----------HHHHHhHHHHHHHHHHHHHcCC-CCcccc--c------------------CCCCC------
Confidence 999876521 1111111223333333333332 211110 1 12211
Q ss_pred HHHHHHHHHHHHhHHCCCceecCCccccccc--hhhhhhccccHHHHHHHH
Q 043190 1145 YLSRLVQNTFEDLEDSGCVKMTEDTVEPTML--GTIASQYYLSYVTVSMFG 1193 (1492)
Q Consensus 1145 ~l~~~i~~~l~~L~~~~~i~~~~~~~~~T~l--G~~~s~~~i~~~T~~~f~ 1193 (1492)
.+.++.|++.|...|+. ++ .+|.+ |+.++.. +.++.++
T Consensus 552 --~~~l~~A~~~L~~lga~--~~---~l~~l~~~~~~~~~----~~~k~~~ 591 (675)
T PHA02653 552 --LDRLRKTEEYIDSFNIS--IE---KWYEILSNYYVNML----EYAKIYV 591 (675)
T ss_pred --HHHHHHHHHHHHHcCCC--ch---hhhhhhccccHHHH----HHhHHHh
Confidence 24578899999999976 22 46877 8777765 5555554
No 75
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4e-33 Score=337.42 Aligned_cols=328 Identities=21% Similarity=0.281 Sum_probs=245.6
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC------CCceEEEEcccHHHHHHHHHHHHHH
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ------SDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~------~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
+||..++|||.||||+++ +|+++|..|-||||||++|.+|+++++..+ .|+.+++++|||+||.|+.+.+..
T Consensus 383 l~y~k~~~IQ~qAiP~Im-sGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~k- 460 (997)
T KOG0334|consen 383 LGYEKPTPIQAQAIPAIM-SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRK- 460 (997)
T ss_pred hcCCCCcchhhhhcchhc-cCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHH-
Confidence 389999999999999999 899999999999999999999999887653 478999999999999999998877
Q ss_pred hhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcc-cCccccCcccEEEEecccccCC-CCccHHHHHH
Q 043190 758 LVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNW-HSRNYVKKVGLMILDEIHLLGA-ERGPILEVIV 832 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~-~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~ 832 (1492)
|.+.+|+++++..|+...... ...++.|+||||+++.+++... ..-..+.++.++|+||||.+.+ .+.|+...|+
T Consensus 461 f~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii 540 (997)
T KOG0334|consen 461 FLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRIL 540 (997)
T ss_pred HHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHH
Confidence 555579999999998764432 2246899999999976555443 3344566777999999997754 5777766677
Q ss_pred HHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHH
Q 043190 833 SRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI 911 (1492)
Q Consensus 833 ~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 911 (1492)
..+ ++..|.+++|||++. .+.++.-.--.+..+.......-.-.+...+. .+.........+...+
T Consensus 541 ~nl-------rpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~------V~~~e~eKf~kL~eLl 607 (997)
T KOG0334|consen 541 QNL-------RPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVR------VCAIENEKFLKLLELL 607 (997)
T ss_pred hhc-------chhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEE------EecCchHHHHHHHHHH
Confidence 665 457899999999987 34444433222222111100000000011000 0000111111234444
Q ss_pred hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHH
Q 043190 912 CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRS 991 (1492)
Q Consensus 912 ~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 991 (1492)
......+++||||.+...|..+...|.+. ++.+..+||+.++.+|.
T Consensus 608 ~e~~e~~~tiiFv~~qe~~d~l~~~L~~a----------------------------------g~~~~slHGgv~q~dR~ 653 (997)
T KOG0334|consen 608 GERYEDGKTIIFVDKQEKADALLRDLQKA----------------------------------GYNCDSLHGGVDQHDRS 653 (997)
T ss_pred HHHhhcCCEEEEEcCchHHHHHHHHHHhc----------------------------------CcchhhhcCCCchHHHH
Confidence 55566899999999999999998888432 45556689999999999
Q ss_pred HHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 992 LVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 992 ~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
.+++.|++|.+++||||+++++|+|++.+.+||+ ||-+.+ ..+|+||+||+||+| +.|.|+.|..+.+
T Consensus 654 sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~pnh------~edyvhR~gRTgrag--rkg~AvtFi~p~q 721 (997)
T KOG0334|consen 654 STIEDFKNGVVNLLVATSVVARGLDVKELILVVN----YDFPNH------YEDYVHRVGRTGRAG--RKGAAVTFITPDQ 721 (997)
T ss_pred hHHHHHhccCceEEEehhhhhcccccccceEEEE----cccchh------HHHHHHHhcccccCC--ccceeEEEeChHH
Confidence 9999999999999999999999999999999998 443332 678999999999999 8999999999844
Q ss_pred H
Q 043190 1072 K 1072 (1492)
Q Consensus 1072 ~ 1072 (1492)
.
T Consensus 722 ~ 722 (997)
T KOG0334|consen 722 L 722 (997)
T ss_pred h
Confidence 3
No 76
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=3.2e-32 Score=304.47 Aligned_cols=395 Identities=20% Similarity=0.254 Sum_probs=267.9
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhc--CCc
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQ--GHQ 83 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 83 (1492)
++.|+|+||||+.|++++|+.|+++ .+.-+.|||||+.|++..... ..+.+.+..++.......-+. .+|
T Consensus 371 ~~AQ~i~LSATVgNp~elA~~l~a~------lV~y~~RPVplErHlvf~~~e--~eK~~ii~~L~k~E~~~~sskg~rGQ 442 (830)
T COG1202 371 PGAQFIYLSATVGNPEELAKKLGAK------LVLYDERPVPLERHLVFARNE--SEKWDIIARLVKREFSTESSKGYRGQ 442 (830)
T ss_pred CCCeEEEEEeecCChHHHHHHhCCe------eEeecCCCCChhHeeeeecCc--hHHHHHHHHHHHHHHhhhhccCcCCc
Confidence 3689999999999999999999998 366689999999998876532 234444455444333322222 479
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+|||++||+.|..+|..|.... ...+.+||||+..+|+.||..
T Consensus 443 tIVFT~SRrr~h~lA~~L~~kG-------------------------------------~~a~pYHaGL~y~eRk~vE~~ 485 (830)
T COG1202 443 TIVFTYSRRRCHELADALTGKG-------------------------------------LKAAPYHAGLPYKERKSVERA 485 (830)
T ss_pred eEEEecchhhHHHHHHHhhcCC-------------------------------------cccccccCCCcHHHHHHHHHH
Confidence 9999999999999999886532 127789999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccH-------
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL------- 236 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~------- 236 (1492)
|.++.+.++|+|..|+.|||+||..||+.+.-.... =.+...|.||.||||||+|+..|.+++++.+...
T Consensus 486 F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~---WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~ 562 (830)
T COG1202 486 FAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIE---WLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEE 562 (830)
T ss_pred HhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccc---cCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccc
Confidence 999999999999999999999999999875544321 1255669999999999999999999999976532
Q ss_pred ---HHHHHHhcC-CCccccchhH-hHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHH
Q 043190 237 ---AYYLRLLTS-QLPIESQFIS-SLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSL 311 (1492)
Q Consensus 237 ---~~~~~~~~~-~~~ies~l~~-~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~ 311 (1492)
+.-.+++.+ ++|+.-...+ .-.+.++| ..|...+..+.-+. |+...|-..+
T Consensus 563 TEdevA~kLL~s~~e~V~vey~ee~e~e~vLA--~~~v~~s~~~i~~v------------~~~~~g~~~~---------- 618 (830)
T COG1202 563 TEDEVAFKLLESEPEPVIVEYDEEDEEENVLA--SAGVTNSLSVIERV------------NSLMLGAAFD---------- 618 (830)
T ss_pred cHHHHHHHHhcCCCCcceeccCcHHHHHHHHH--HhhhcCcHHHHhhc------------ChhhccccCC----------
Confidence 122334433 3455444433 23344444 23333333322211 2222232211
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccch
Q 043190 312 KQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRD 391 (1492)
Q Consensus 312 ~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~ 391 (1492)
.+.++..|++.|||..+ ++.+.+|+.|+++|.+++.|.++..+.+.+-..++. +.+++.-.=|++.++..
T Consensus 619 -----~~k~l~~Lee~g~i~~~--G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v~~~~~p---l~i~~~l~pfE~ayls~ 688 (830)
T COG1202 619 -----PKKALSKLEEYGMIKKK--GNIVRPTPYGRAVAMSFLGPSEAEFIREGVLASMDP---LRIAAELEPFENAYLSG 688 (830)
T ss_pred -----HHHHHHHHHhcCCeecc--CCEeeeccccceeEEeecCchHHHHHHHhhhccCCh---HhHhhccccccccccCh
Confidence 23789999999999854 567999999999999999999999999886555444 34444444465555554
Q ss_pred hHHHHHHHHHhcCCcccccC-----------CC----CChhHHHHHHHHHHHcC-------------------CCCC---
Q 043190 392 EEQNELETLVQTLCPVEVKG-----------GP----SNKHGKISILIQLYISR-------------------GWID--- 434 (1492)
Q Consensus 392 ~e~~~l~~l~~~~~~~~~~~-----------~~----~~~~~K~~~Llqa~i~~-------------------~~~~--- 434 (1492)
.-+.+++....-.+|..+-. .+ .....|...+.+++++. +.++
T Consensus 689 ~l~r~i~~~~~~~vpsr~f~~a~~~I~~e~d~ii~ld~k~~e~l~~i~~df~~c~c~d~ce~~~~~lse~ii~lR~~gk~ 768 (830)
T COG1202 689 FLKRAIESALRGRVPSRLFDSALLDILEEGDKIIELDPKLKEKLLLIYMDFLNCTCRDCCECAEQRLSEKIIELRIEGKD 768 (830)
T ss_pred HHHHHHHHHhcCCCchhhhhHHHHHHHhchhhhhcCCHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 44444443332211111000 00 01123444444444442 1111
Q ss_pred ----------Cch---hHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcC
Q 043190 435 ----------TFS---LVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQ 482 (1492)
Q Consensus 435 ----------~~~---l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~ 482 (1492)
.|. ..+|..+-++++.|++.|.-.||..++--..+..+..+.+-++.+
T Consensus 769 p~~Isr~l~~~Ygi~aYpgDif~wLd~~vr~Lea~~rIArvf~kr~~~~ea~~lk~~ie~~ 829 (830)
T COG1202 769 PSQISRILEKRYGIQAYPGDIFTWLDTLVRLLEAIGRIARVFKKREVEAEAKALKKKIEEG 829 (830)
T ss_pred HHHHHHHHHHhhCeeecChhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhcC
Confidence 233 349999999999999999999999888877778888888776543
No 77
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=2.9e-32 Score=355.55 Aligned_cols=315 Identities=19% Similarity=0.308 Sum_probs=226.8
Q ss_pred hHhhhcCCCCCCHHHHHHHHhhhcC-----CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHH
Q 043190 679 IYEALYNFSHFNPIQTQIFHILYHT-----DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 679 ~~~~~~~~~~l~~~Q~~~i~~~~~~-----~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~ 753 (1492)
.+.+-|+| .||++|.+|++.++.. .++++++||||+|||.+|+.+++..+.. +.++++++||++||.|+++.
T Consensus 592 ~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--g~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 592 LFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--HKQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred HHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHH
Confidence 34455688 5999999999998842 2799999999999999999888877653 78999999999999999999
Q ss_pred HHHHhhhccCCEEEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCcc
Q 043190 754 WKDRLVSQLGKEMVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGP 826 (1492)
Q Consensus 754 ~~~~~~~~~g~~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~ 826 (1492)
|.+.+... ++++..++|..+...+. ..+.+|+|+||+.+ +. ...+++++++||||+|+++..
T Consensus 669 f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~---~v~~~~L~lLVIDEahrfG~~--- 737 (1147)
T PRK10689 669 FRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QS---DVKWKDLGLLIVDEEHRFGVR--- 737 (1147)
T ss_pred HHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hC---CCCHhhCCEEEEechhhcchh---
Confidence 99877765 78888888866543221 13679999999733 22 223678999999999987421
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
. ..+++ ....+.+++++|||+.. ...++. .+..+...+...+..+ .++......+.. ...
T Consensus 738 -~---~e~lk----~l~~~~qvLl~SATpiprtl~l~~-~gl~d~~~I~~~p~~r-~~v~~~~~~~~~-------~~~-- 798 (1147)
T PRK10689 738 -H---KERIK----AMRADVDILTLTATPIPRTLNMAM-SGMRDLSIIATPPARR-LAVKTFVREYDS-------LVV-- 798 (1147)
T ss_pred -H---HHHHH----hcCCCCcEEEEcCCCCHHHHHHHH-hhCCCcEEEecCCCCC-CCceEEEEecCc-------HHH--
Confidence 1 12222 23457899999999754 222222 2333333333222222 233322221100 000
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
....+.....+++++||||+++.++.++..|.+.. .+.++..+||+|
T Consensus 799 -k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~~--------------------------------p~~~v~~lHG~m 845 (1147)
T PRK10689 799 -REAILREILRGGQVYYLYNDVENIQKAAERLAELV--------------------------------PEARIAIGHGQM 845 (1147)
T ss_pred -HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC--------------------------------CCCcEEEEeCCC
Confidence 11122233456899999999999999888775432 145789999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
++++|..+++.|++|+++|||||+++++|+|+|++++||. .++ ..+...+|.||+||+||.| ..|.|++
T Consensus 846 ~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----~~a-----d~fglaq~~Qr~GRvGR~g--~~g~a~l 914 (1147)
T PRK10689 846 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERA-----DHFGLAQLHQLRGRVGRSH--HQAYAWL 914 (1147)
T ss_pred CHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE----ecC-----CCCCHHHHHHHhhccCCCC--CceEEEE
Confidence 9999999999999999999999999999999999999884 111 1235678999999999987 8999999
Q ss_pred EecCC
Q 043190 1066 LVHEP 1070 (1492)
Q Consensus 1066 l~~~~ 1070 (1492)
++..+
T Consensus 915 l~~~~ 919 (1147)
T PRK10689 915 LTPHP 919 (1147)
T ss_pred EeCCC
Confidence 98654
No 78
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=313.53 Aligned_cols=331 Identities=23% Similarity=0.313 Sum_probs=235.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC------CCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ------SDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~------~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
+|..|+|+|.+|++.++ ..++++.|||||||||++|.+|++..+... .+-+++|+.|+|+||.|++.++.+ +
T Consensus 155 ~F~~Pt~iq~~aipvfl-~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k-~ 232 (593)
T KOG0344|consen 155 GFDEPTPIQKQAIPVFL-EKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRK-Y 232 (593)
T ss_pred CCCCCCcccchhhhhhh-cccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHh-c
Confidence 89999999999999998 789999999999999999999999988653 246899999999999999999877 4
Q ss_pred h--hccCCEEEEEcCCCCcch----hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC--CccHHHH
Q 043190 759 V--SQLGKEMVEMTGDYTPDL----MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE--RGPILEV 830 (1492)
Q Consensus 759 ~--~~~g~~v~~~~g~~~~~~----~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~--~g~~~~~ 830 (1492)
. ...+.++........... .....++|+++||-++..++........++.+.++|+||++++.+. +..++..
T Consensus 233 ~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~ 312 (593)
T KOG0344|consen 233 SIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLAD 312 (593)
T ss_pred CCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHH
Confidence 3 222444444444322221 1223679999999998777776443356889999999999988543 2222222
Q ss_pred HHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcc-ccccccccChhHHH
Q 043190 831 IVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKF-YCPRMNSMNKPAYA 909 (1492)
Q Consensus 831 i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~ 909 (1492)
+++.. ..+..++-++|||.+ ..+.+|...............++..... ..... ++. ....+.....
T Consensus 313 I~sac------~s~~i~~a~FSat~~--~~VEE~~~~i~~~~~~vivg~~~sa~~~----V~QelvF~g-se~~K~lA~r 379 (593)
T KOG0344|consen 313 IYSAC------QSPDIRVALFSATIS--VYVEEWAELIKSDLKRVIVGLRNSANET----VDQELVFCG-SEKGKLLALR 379 (593)
T ss_pred HHHHh------cCcchhhhhhhcccc--HHHHHHHHHhhccceeEEEecchhHhhh----hhhhheeee-cchhHHHHHH
Confidence 33222 236788889999975 4666676543322111111111111000 00000 111 1111112223
Q ss_pred HHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHH
Q 043190 910 AICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKD 989 (1492)
Q Consensus 910 ~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 989 (1492)
.+....-..|+|||+.+.+.|..+...|. .+-+..|.++||..++.+
T Consensus 380 q~v~~g~~PP~lIfVQs~eRak~L~~~L~---------------------------------~~~~i~v~vIh~e~~~~q 426 (593)
T KOG0344|consen 380 QLVASGFKPPVLIFVQSKERAKQLFEELE---------------------------------IYDNINVDVIHGERSQKQ 426 (593)
T ss_pred HHHhccCCCCeEEEEecHHHHHHHHHHhh---------------------------------hccCcceeeEecccchhH
Confidence 33334456799999999999998887662 112567999999999999
Q ss_pred HHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 990 RSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 990 R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
|..++++|+.|++.||+||+++++|+|+.+++.||+ ||- +-+..+|+||+||+||+| +.|.||.|+++
T Consensus 427 rde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD~------p~s~~syihrIGRtgRag--~~g~Aitfytd 494 (593)
T KOG0344|consen 427 RDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YDF------PQSDLSYIHRIGRTGRAG--RSGKAITFYTD 494 (593)
T ss_pred HHHHHHHHhccCeeEEEehhhhhccccccCcceEEe----cCC------CchhHHHHHHhhccCCCC--CCcceEEEecc
Confidence 999999999999999999999999999999999998 442 223679999999999998 99999999998
Q ss_pred CcHHHH
Q 043190 1070 PKKSFY 1075 (1492)
Q Consensus 1070 ~~~~~~ 1075 (1492)
.+....
T Consensus 495 ~d~~~i 500 (593)
T KOG0344|consen 495 QDMPRI 500 (593)
T ss_pred ccchhh
Confidence 665443
No 79
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=1.1e-31 Score=340.45 Aligned_cols=345 Identities=19% Similarity=0.263 Sum_probs=262.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc-C
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL-G 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~-g 763 (1492)
|+..|+++|.+|+..+. +|+|+||+.|||||||.+|++||++.+.+.+..++||+.||+|||+.+.+++++...... +
T Consensus 67 g~~~lY~HQ~~A~~~~~-~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 67 GIERLYSHQVDALRLIR-EGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred ccccccHHHHHHHHHHH-CCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 77779999999999998 789999999999999999999999999988888999999999999999999998776663 3
Q ss_pred CEEEEEcCCCCcchhc---cCCCcEEEECchhhhH-hhhcccC-ccccCcccEEEEecccccCCCCccHHHHHHHHHHHh
Q 043190 764 KEMVEMTGDYTPDLMA---LLSADIIISTPEKWDG-ISRNWHS-RNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYI 838 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~-l~~~~~~-~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~ 838 (1492)
+.+..++||+....+. ...++|++|||.+|.. +++.... ...++++++||+||+|.+..-+|..+..++.|++.+
T Consensus 146 v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~ 225 (851)
T COG1205 146 VTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRR 225 (851)
T ss_pred ceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHH
Confidence 8889999999887763 5689999999999987 4554333 334678999999999999888999999999999999
Q ss_pred hhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccc-cccChhHHHHHh--hcC
Q 043190 839 SSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM-NSMNKPAYAAIC--THS 915 (1492)
Q Consensus 839 ~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~--~~~ 915 (1492)
....+.++++|++|||+.|+.+++.-+........ +..+..|-.....+...+........ ..........+. ...
T Consensus 226 ~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~ 304 (851)
T COG1205 226 LRRYGSPLQIICTSATLANPGEFAEELFGRDFEVP-VDEDGSPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVR 304 (851)
T ss_pred HhccCCCceEEEEeccccChHHHHHHhcCCcceee-ccCCCCCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHH
Confidence 88888899999999999998877765544433321 22233333333333322211111111 000011111111 224
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
.+-++|+|+.+++.++.++........... ..+...+..|+|++..++|..++.
T Consensus 305 ~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~--------------------------~~l~~~v~~~~~~~~~~er~~ie~ 358 (851)
T COG1205 305 NGIQTLVFFRSRKQVELLYLSPRRRLVREG--------------------------GKLLDAVSTYRAGLHREERRRIEA 358 (851)
T ss_pred cCceEEEEEehhhhhhhhhhchhHHHhhcc--------------------------hhhhhheeeccccCCHHHHHHHHH
Confidence 678999999999999988754433321110 112356899999999999999999
Q ss_pred HHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccC-CHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 996 LFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDF-PITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 996 ~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~-~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
.|++|++.++++|++++-|+|+-++..||... ++. +..+++||.|||||.+ ..+..++....
T Consensus 359 ~~~~g~~~~~~st~AlelgidiG~ldavi~~g----------~P~~s~~~~~Q~~GRaGR~~--~~~l~~~v~~~ 421 (851)
T COG1205 359 EFKEGELLGVIATNALELGIDIGSLDAVIAYG----------YPGVSVLSFRQRAGRAGRRG--QESLVLVVLRS 421 (851)
T ss_pred HHhcCCccEEecchhhhhceeehhhhhHhhcC----------CCCchHHHHHHhhhhccCCC--CCceEEEEeCC
Confidence 99999999999999999999999999998711 344 6789999999999987 55555555543
No 80
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1.5e-32 Score=309.95 Aligned_cols=330 Identities=18% Similarity=0.261 Sum_probs=249.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
+|..|+++|..|||.++ .+.++||.|..|+|||++|-..+++.+... ...+++|++|||++|.|+.+.+......+.|
T Consensus 44 ~f~~ptkiQaaAIP~~~-~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g 122 (980)
T KOG4284|consen 44 AFALPTKIQAAAIPAIF-SKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTG 122 (980)
T ss_pred cccCCCchhhhhhhhhh-cccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccC
Confidence 89999999999999998 889999999999999999998888876543 4678999999999999999998885555668
Q ss_pred CEEEEEcCCCCc--chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC--CCccHHHHHHHHHHHhh
Q 043190 764 KEMVEMTGDYTP--DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA--ERGPILEVIVSRMRYIS 839 (1492)
Q Consensus 764 ~~v~~~~g~~~~--~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~--~~g~~~~~i~~~l~~~~ 839 (1492)
.+|..+.|++.. +...+++++|+|+|||++..|... .....++++++|+||||.|.+ .+...+..|+..
T Consensus 123 ~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el--~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~s----- 195 (980)
T KOG4284|consen 123 ARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVEL--GAMNMSHVRLFVLDEADKLMDTESFQDDINIIINS----- 195 (980)
T ss_pred cceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHh--cCCCccceeEEEeccHHhhhchhhHHHHHHHHHHh-----
Confidence 999999998764 445567899999999999888876 344578999999999997643 344455555544
Q ss_pred hccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEecCCCcc-ccCcEEEEeccCCccccccccccChhHHHHHhhcCC
Q 043190 840 SQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFNFKPSVR-PVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSP 916 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~~~~~~r-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 916 (1492)
++...|++++|||-|. ...++.++.-+ .++.+..... -..+...+...+..........++...+..+...-+
T Consensus 196 --lP~~rQv~a~SATYp~nLdn~Lsk~mrdp--~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ip 271 (980)
T KOG4284|consen 196 --LPQIRQVAAFSATYPRNLDNLLSKFMRDP--ALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIP 271 (980)
T ss_pred --cchhheeeEEeccCchhHHHHHHHHhccc--ceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCc
Confidence 4567899999999876 34466666433 2333332211 112222222211111111111111222333444567
Q ss_pred CCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHH
Q 043190 917 TKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL 996 (1492)
Q Consensus 917 ~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 996 (1492)
-.+.||||+....|+-++..|. ..++.+.++.|.|++.+|..+++.
T Consensus 272 y~QAlVF~~~~sra~~~a~~L~----------------------------------ssG~d~~~ISgaM~Q~~Rl~a~~~ 317 (980)
T KOG4284|consen 272 YVQALVFCDQISRAEPIATHLK----------------------------------SSGLDVTFISGAMSQKDRLLAVDQ 317 (980)
T ss_pred hHHHHhhhhhhhhhhHHHHHhh----------------------------------ccCCCeEEeccccchhHHHHHHHH
Confidence 7789999999999999887773 237789999999999999999999
Q ss_pred HhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 997 FANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 997 f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
++.-..+|||+|+..+||||-|.+++||+ .|+ +....+|+||+|||||-| ..|.++.++...+.
T Consensus 318 lr~f~~rILVsTDLtaRGIDa~~vNLVVN----iD~------p~d~eTY~HRIGRAgRFG--~~G~aVT~~~~~~e 381 (980)
T KOG4284|consen 318 LRAFRVRILVSTDLTARGIDADNVNLVVN----IDA------PADEETYFHRIGRAGRFG--AHGAAVTLLEDERE 381 (980)
T ss_pred hhhceEEEEEecchhhccCCccccceEEe----cCC------CcchHHHHHHhhhccccc--ccceeEEEeccchh
Confidence 99999999999999999999999999998 221 223679999999999976 99999999987654
No 81
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1e-31 Score=290.78 Aligned_cols=340 Identities=17% Similarity=0.257 Sum_probs=251.8
Q ss_pred cccCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHH
Q 043190 673 TALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 673 ~~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q 749 (1492)
-.|+.++++.+| ||+.|+.+|+.|+..+. .|.|+++.+++|+|||.++..++++.+... ....+++++|+|+||.|
T Consensus 31 m~L~e~LLrgiy~yGFekPSaIQqraI~p~i-~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~q 109 (397)
T KOG0327|consen 31 MNLKESLLRGIYAYGFEKPSAIQQRAILPCI-KGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQ 109 (397)
T ss_pred cCCCHHHHhHHHhhccCCchHHHhccccccc-cCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHH
Confidence 346667788887 99999999999999988 789999999999999999999999987532 35689999999999999
Q ss_pred HHHHHHHHhhhccCCEEEEEcCCCCcc--hhc--cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CC
Q 043190 750 RMNDWKDRLVSQLGKEMVEMTGDYTPD--LMA--LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER 824 (1492)
Q Consensus 750 ~~~~~~~~~~~~~g~~v~~~~g~~~~~--~~~--~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~ 824 (1492)
....... ++...+.++..+.|+.... ... ...++|+++||++...++... ....+.++++|+||++.+.+ ++
T Consensus 110 i~~v~~~-lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~--~l~~~~iKmfvlDEaDEmLs~gf 186 (397)
T KOG0327|consen 110 IQKVVRA-LGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG--SLSTDGIKMFVLDEADEMLSRGF 186 (397)
T ss_pred HHHHHHh-hhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc--cccccceeEEeecchHhhhccch
Confidence 9955544 7777788888777765432 222 235799999999988888763 44467799999999997643 55
Q ss_pred ccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccccccc
Q 043190 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM 903 (1492)
Q Consensus 825 g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 903 (1492)
...+..+... .+.+.|++++|||.|. ..++++-+.-.+..+..-... +. ..+.. .++.......
T Consensus 187 kdqI~~if~~-------lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~-----lt--l~gik-q~~i~v~k~~ 251 (397)
T KOG0327|consen 187 KDQIYDIFQE-------LPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE-----LT--LEGIK-QFYINVEKEE 251 (397)
T ss_pred HHHHHHHHHH-------cCcchhheeecccCcHHHHHHHHHhccCceEEEecchh-----hh--hhhee-eeeeeccccc
Confidence 5555555544 4568899999999986 455555444333222211111 00 11111 1111111111
Q ss_pred ChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecC
Q 043190 904 NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHA 983 (1492)
Q Consensus 904 ~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~ 983 (1492)
+-.....+.. ...+.+|||||++.+..+...|.. .++.+...|+
T Consensus 252 k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~----------------------------------~~~~~s~~~~ 295 (397)
T KOG0327|consen 252 KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRA----------------------------------HGFTVSAIHG 295 (397)
T ss_pred cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhh----------------------------------CCceEEEeec
Confidence 1122222222 567899999999999998877722 3678899999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEE
Q 043190 984 GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 984 ~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
.|.+.+|..+.+.|+.|..+|||+|+.+++|+|+..+..||+ |+.+. ...+|+||+||+||.| .+|.+
T Consensus 296 d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin----ydlP~------~~~~yihR~gr~gr~g--rkg~~ 363 (397)
T KOG0327|consen 296 DMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN----YDLPA------RKENYIHRIGRAGRFG--RKGVA 363 (397)
T ss_pred ccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee----ecccc------chhhhhhhcccccccC--CCcee
Confidence 999999999999999999999999999999999999999998 44322 2789999999999977 99999
Q ss_pred EEEecCCcHHHHHHhh
Q 043190 1064 VILVHEPKKSFYKKFL 1079 (1492)
Q Consensus 1064 i~l~~~~~~~~~~~~l 1079 (1492)
+.++.+.+...+++..
T Consensus 364 in~v~~~d~~~lk~ie 379 (397)
T KOG0327|consen 364 INFVTEEDVRDLKDIE 379 (397)
T ss_pred eeeehHhhHHHHHhHH
Confidence 9999988776655443
No 82
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.98 E-value=9.4e-31 Score=322.71 Aligned_cols=326 Identities=16% Similarity=0.157 Sum_probs=206.8
Q ss_pred hHhhhcCCCCCCHHHHHHHHhhhcCCC-cEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHHHHH
Q 043190 679 IYEALYNFSHFNPIQTQIFHILYHTDN-NVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 679 ~~~~~~~~~~l~~~Q~~~i~~~~~~~~-~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
.|..+.||+ |+|||.++++.++ .|+ ++++++|||||||.++..+++...... ...+++|++|+|+||.|+++.+.+
T Consensus 7 ff~~~~G~~-PtpiQ~~~i~~il-~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 7 WYQGLHGYS-PFPWQLSLAERFV-AGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred HHHHHhCCC-CCHHHHHHHHHHH-cCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHH
Confidence 344555998 9999999999998 555 788899999999997655444322211 234667788999999999999887
Q ss_pred Hhhhc----------------------cCCEEEEEcCCCCcchhc---cCCCcEEEECchhhhH-hhhccc---------
Q 043190 757 RLVSQ----------------------LGKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDG-ISRNWH--------- 801 (1492)
Q Consensus 757 ~~~~~----------------------~g~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~-l~~~~~--------- 801 (1492)
..... .++++..+.|+...+... ..+++|+|+|++.+.. .+.+..
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi 164 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPL 164 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccc
Confidence 44322 137788889987654322 2467999999754421 110000
Q ss_pred CccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCcc
Q 043190 802 SRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVR 880 (1492)
Q Consensus 802 ~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r 880 (1492)
....+++++++|+|||| +...+...++.+++.+.. .....+.|+++||||++. ..++...+...+.. +.......
T Consensus 165 ~ag~L~~v~~LVLDEAD-Ld~gF~~~l~~Il~~l~r--p~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~-i~V~~~~l 240 (844)
T TIGR02621 165 HAGFLGQDALIVHDEAH-LEPAFQELLKQIMNEQQR--PPDFLPLRVVELTATSRTDGPDRTTLLSAEDYK-HPVLKKRL 240 (844)
T ss_pred hhhhhccceEEEEehhh-hccccHHHHHHHHHhccc--CcccccceEEEEecCCCccHHHHHHHHccCCce-eecccccc
Confidence 01136889999999999 544555555555554210 001123699999999975 33444444333221 11111000
Q ss_pred ccCcEEEEeccCCccccccccccChhHHHHH--hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHH
Q 043190 881 PVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI--CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDL 958 (1492)
Q Consensus 881 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~ 958 (1492)
...-...+..... ... .......+ .....++++||||||++.|+.++..|.+
T Consensus 241 ~a~ki~q~v~v~~------e~K-l~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~------------------- 294 (844)
T TIGR02621 241 AAKKIVKLVPPSD------EKF-LSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPK------------------- 294 (844)
T ss_pred cccceEEEEecCh------HHH-HHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHh-------------------
Confidence 0000011100000 000 00111111 1123567899999999999999988743
Q ss_pred HHHHhhcCcHHHHHHhccceEeecCCCCHHHHH-----HHHHHHhc----CC-------ceEEEeccccccccCCCCcEE
Q 043190 959 QMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRS-----LVEELFAN----NK-------IQVLVCTSTLAWGVNLPAHLV 1022 (1492)
Q Consensus 959 ~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~-----~v~~~f~~----g~-------~~vLvaT~~l~~Gvdip~~~~ 1022 (1492)
.++..+||+|++.+|. .+++.|++ |. .+|||||+++++|+|++. .+
T Consensus 295 -----------------~g~~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~ 356 (844)
T TIGR02621 295 -----------------EKFELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DH 356 (844)
T ss_pred -----------------cCCeEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ce
Confidence 1337899999999999 78999987 54 689999999999999998 55
Q ss_pred EEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 1023 IIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 1023 VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
||+ ...|.++|+||+||+||.|....+.++++
T Consensus 357 VI~------------d~aP~esyIQRiGRtgR~G~~~~~~i~vv 388 (844)
T TIGR02621 357 LVC------------DLAPFESMQQRFGRVNRFGELQACQIAVV 388 (844)
T ss_pred EEE------------CCCCHHHHHHHhcccCCCCCCCCceEEEE
Confidence 554 23578999999999999884333333333
No 83
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.98 E-value=3.4e-31 Score=316.71 Aligned_cols=303 Identities=19% Similarity=0.183 Sum_probs=197.2
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCc----------
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTP---------- 775 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~---------- 775 (1492)
+++++||||||||++|+++++..+....+.+++|++|+++|+.|+++++...|+. +++.++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~----~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS----NLGLLHSSSSFKRIKEMGDSE 76 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc----ccEEeeccHHHHHHhccCCch
Confidence 4799999999999999999999876666789999999999999999999887643 34444442210
Q ss_pred -----------chhccCCCcEEEECchhhhHhhhcccC--ccccC--cccEEEEecccccCCCCccHHHHHHHHHHHhhh
Q 043190 776 -----------DLMALLSADIIISTPEKWDGISRNWHS--RNYVK--KVGLMILDEIHLLGAERGPILEVIVSRMRYISS 840 (1492)
Q Consensus 776 -----------~~~~~~~~~Iiv~Tpe~l~~l~~~~~~--~~~l~--~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~ 840 (1492)
+......++|+|+||+++...+..... ...+. ..+++|+||+|.+.+.....+..++..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~---- 152 (358)
T TIGR01587 77 EFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK---- 152 (358)
T ss_pred hHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH----
Confidence 000112468999999997655443111 11111 23799999999886532222333333332
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccc--cccccccChhHHH-HHhhcCCC
Q 043190 841 QTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFY--CPRMNSMNKPAYA-AICTHSPT 917 (1492)
Q Consensus 841 ~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~-~l~~~~~~ 917 (1492)
..+.|+++||||+| +.+.+++...............+.. ......+ ............. .+.....+
T Consensus 153 --~~~~~~i~~SATlp--~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 222 (358)
T TIGR01587 153 --DNDVPILLMSATLP--KFLKEYAEKIGYVEFNEPLDLKEER------RFERHRFIKIESDKVGEISSLERLLEFIKKG 222 (358)
T ss_pred --HcCCCEEEEecCch--HHHHHHHhcCCCcccccCCCCcccc------ccccccceeeccccccCHHHHHHHHHHhhCC
Confidence 23678999999997 4455554321110000000000000 0000000 0000001111222 22333457
Q ss_pred CCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHH----
Q 043190 918 KPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLV---- 993 (1492)
Q Consensus 918 ~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v---- 993 (1492)
+++||||+|++.|+.++..|.+.. ....+..+||++++.+|..+
T Consensus 223 ~~~lVf~~t~~~~~~~~~~L~~~~--------------------------------~~~~~~~~h~~~~~~~r~~~~~~~ 270 (358)
T TIGR01587 223 GKIAIIVNTVDRAQEFYQQLKENA--------------------------------PEEEIMLLHSRFTEKDRAKKEAEL 270 (358)
T ss_pred CeEEEEECCHHHHHHHHHHHHhhc--------------------------------CCCeEEEEECCCCHHHHHHHHHHH
Confidence 899999999999999998885531 12358999999999999764
Q ss_pred HHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCC--CceEEEEEecCCc
Q 043190 994 EELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD--QHGKAVILVHEPK 1071 (1492)
Q Consensus 994 ~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~--~~G~~i~l~~~~~ 1071 (1492)
++.|++|+.+|||||+++++|+|+|. .+||. .+.|..+|+||+||+||.|.. ..|.++++...++
T Consensus 271 ~~~f~~~~~~ilvaT~~~~~GiDi~~-~~vi~------------~~~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 271 LEEMKKNEKFVIVATQVIEASLDISA-DVMIT------------ELAPIDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHhcCCCCeEEEECcchhceeccCC-CEEEE------------cCCCHHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 88999999999999999999999974 55554 455789999999999998743 3358888876554
No 84
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.97 E-value=2.3e-30 Score=289.89 Aligned_cols=336 Identities=21% Similarity=0.269 Sum_probs=229.8
Q ss_pred CCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
.-+++.+|......++ .+|++++.|||-|||+++.+-+...+...++ ++|+++||+.|+.|.+..+.+.++-. ...
T Consensus 13 ~ie~R~YQ~~i~a~al--~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip-~~~ 88 (542)
T COG1111 13 TIEPRLYQLNIAAKAL--FKNTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLVLQHAEFCRKVTGIP-EDE 88 (542)
T ss_pred cccHHHHHHHHHHHHh--hcCeEEEecCCccHHHHHHHHHHHHHHhcCC-eEEEecCCchHHHHHHHHHHHHhCCC-hhh
Confidence 3468899999988887 3599999999999999999999988888655 99999999999999999988865432 446
Q ss_pred EEEEcCCCCcchhc--cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccC
Q 043190 766 MVEMTGDYTPDLMA--LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 766 v~~~~g~~~~~~~~--~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
+..++|...++.+. ..+.+|+|+||+.+..=+.. +...+.++.++|+||||+--. +..|-.+....- ...
T Consensus 89 i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~--Grid~~dv~~lifDEAHRAvG--nyAYv~Va~~y~----~~~ 160 (542)
T COG1111 89 IAALTGEVRPEEREELWAKKKVFVATPQVVENDLKA--GRIDLDDVSLLIFDEAHRAVG--NYAYVFVAKEYL----RSA 160 (542)
T ss_pred eeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhc--CccChHHceEEEechhhhccC--cchHHHHHHHHH----Hhc
Confidence 88999999887554 35789999999987443333 344588999999999997522 223333333222 134
Q ss_pred CceEEEEEcCCCCC----hHHHHHHhcCCcceeEe-cCCCccccCc--EEEEec--------------------------
Q 043190 844 RAVRFIGLSTALAN----AGDLADWLGVGEIGLFN-FKPSVRPVPL--EVHIQG-------------------------- 890 (1492)
Q Consensus 844 ~~~~ii~lSATl~~----~~~~~~~l~~~~~~~~~-~~~~~r~~~l--~~~~~~-------------------------- 890 (1492)
.+++++|||||+++ ..++.+-||+....+-. .+++.+|.-- ++....
T Consensus 161 k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~ 240 (542)
T COG1111 161 KNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLK 240 (542)
T ss_pred cCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999987 34566667665432211 1222222110 000000
Q ss_pred -------cC---Cccccccc----------c-------------------------------------------c-cCh-
Q 043190 891 -------YP---GKFYCPRM----------N-------------------------------------------S-MNK- 905 (1492)
Q Consensus 891 -------~~---~~~~~~~~----------~-------------------------------------------~-~~~- 905 (1492)
.. ........ . . ..+
T Consensus 241 ~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~ 320 (542)
T COG1111 241 ELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKA 320 (542)
T ss_pred HcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHH
Confidence 00 00000000 0 0 000
Q ss_pred -----------hH--------------------HHHH---hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccC
Q 043190 906 -----------PA--------------------YAAI---CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFL 951 (1492)
Q Consensus 906 -----------~~--------------------~~~l---~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~ 951 (1492)
.. ...+ ....++.++|||++-|..++.++..|.+...... ..|.
T Consensus 321 a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~--~rFi 398 (542)
T COG1111 321 AKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKAR--VRFI 398 (542)
T ss_pred HHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcce--eEEe
Confidence 00 0000 0113456899999999999999888865432110 1121
Q ss_pred CCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeee
Q 043190 952 GMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYD 1031 (1492)
Q Consensus 952 ~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~ 1031 (1492)
|-.-.-+..||++.++.++++.|+.|+.+|||||+++++|+|+|.+++||. |+
T Consensus 399 -----------------------GQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif----YE 451 (542)
T COG1111 399 -----------------------GQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF----YE 451 (542)
T ss_pred -----------------------eccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEE----ec
Confidence 111223347999999999999999999999999999999999999999996 76
Q ss_pred CccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1032 GKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1032 ~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+-. |...++||.||+||. +.|.+++|+.++.
T Consensus 452 pvp------SeIR~IQR~GRTGR~---r~Grv~vLvt~gt 482 (542)
T COG1111 452 PVP------SEIRSIQRKGRTGRK---RKGRVVVLVTEGT 482 (542)
T ss_pred CCc------HHHHHHHhhCccccC---CCCeEEEEEecCc
Confidence 532 466899999999995 7999999998873
No 85
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.97 E-value=6e-30 Score=300.83 Aligned_cols=300 Identities=22% Similarity=0.264 Sum_probs=196.5
Q ss_pred HHHHHHHhhhcCCC-cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc---cCCEEE
Q 043190 692 IQTQIFHILYHTDN-NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ---LGKEMV 767 (1492)
Q Consensus 692 ~Q~~~i~~~~~~~~-~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~---~g~~v~ 767 (1492)
+|.++++++++++. +++++||||||||.+|++|++.. ..+++|++|+++|+.|++++|.+.+... .+..+.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~ 75 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----ENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLL 75 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEE
Confidence 59999999996653 58999999999999999998852 5678999999999999999999877543 256777
Q ss_pred EEcCCCCcchh-----------------------ccCCCcEEEECchhhhHhhhcccCc------cccCcccEEEEeccc
Q 043190 768 EMTGDYTPDLM-----------------------ALLSADIIISTPEKWDGISRNWHSR------NYVKKVGLMILDEIH 818 (1492)
Q Consensus 768 ~~~g~~~~~~~-----------------------~~~~~~Iiv~Tpe~l~~l~~~~~~~------~~l~~i~liViDEaH 818 (1492)
.++|+...+.+ ....++|+++||+.|..+++.+... .++.+++++|+||+|
T Consensus 76 ~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H 155 (357)
T TIGR03158 76 HVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFH 155 (357)
T ss_pred EecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEeccc
Confidence 88886332200 0125789999999999888765322 236799999999999
Q ss_pred ccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHH--hcCCccee----EecCC-----------Cc
Q 043190 819 LLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADW--LGVGEIGL----FNFKP-----------SV 879 (1492)
Q Consensus 819 ~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~--l~~~~~~~----~~~~~-----------~~ 879 (1492)
.++......+...+..+..+.. .....++++||||++.. +.+.+. ++.+...+ +.+.. .+
T Consensus 156 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~ 234 (357)
T TIGR03158 156 LYDAKQLVGMLFLLAYMQLIRF-FECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSF 234 (357)
T ss_pred ccCcccchhhhhhhHHHHHHHh-hhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcccccccc
Confidence 9875444444433333332221 12357999999998752 222222 12111000 01100 11
Q ss_pred ccc--CcEEEEeccCCccccccccccChhHHHHHh---hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCC
Q 043190 880 RPV--PLEVHIQGYPGKFYCPRMNSMNKPAYAAIC---THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP 954 (1492)
Q Consensus 880 r~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~ 954 (1492)
|++ ++...+.. ...... .........+. ...+++++||||+|++.++.++..|.+..
T Consensus 235 ~~~~~~i~~~~~~-~~~~~~----~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~------------- 296 (357)
T TIGR03158 235 RPVLPPVELELIP-APDFKE----EELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQG------------- 296 (357)
T ss_pred ceeccceEEEEEe-CCchhH----HHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhC-------------
Confidence 211 22222211 010000 00011112121 12356789999999999999998884320
Q ss_pred hHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCcc
Q 043190 955 EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKT 1034 (1492)
Q Consensus 955 ~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~ 1034 (1492)
.+..+..+||.+++.+|..+ ++.+|||||+++++|+|+|.+.+|+ +
T Consensus 297 -------------------~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~~vi~------~--- 342 (357)
T TIGR03158 297 -------------------LGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRDWLIF------S--- 342 (357)
T ss_pred -------------------CCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCceEEE------C---
Confidence 13457789999999988654 4789999999999999999885443 1
Q ss_pred CccccCCHHHHHHhhcccC
Q 043190 1035 KRYVDFPITDILQMMGRAG 1053 (1492)
Q Consensus 1035 ~~~~~~~~~~~~Qr~GRag 1053 (1492)
+.+..+|+||+||+|
T Consensus 343 ----p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 343 ----ARDAAAFWQRLGRLG 357 (357)
T ss_pred ----CCCHHHHhhhcccCC
Confidence 236889999999998
No 86
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.4e-30 Score=295.80 Aligned_cols=448 Identities=18% Similarity=0.178 Sum_probs=286.1
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC----CceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcC
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS----DMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTG 771 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~----~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g 771 (1492)
+..++ +.+..+||||.||||||++....++++--... ++.+-|..|+|..|..+++++...++.. |..|....
T Consensus 264 IMEaI-n~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~-~~eVsYqI- 340 (1172)
T KOG0926|consen 264 IMEAI-NENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVL-GSEVSYQI- 340 (1172)
T ss_pred HHHHh-hcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccC-ccceeEEE-
Confidence 34444 47789999999999999999988888643322 5688999999999999999988888773 66665532
Q ss_pred CCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCC------c
Q 043190 772 DYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTER------A 845 (1492)
Q Consensus 772 ~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~------~ 845 (1492)
..+......+.|.++|.| .++|....+..|..++.||+||||.-+ -....+-.+++|+-.+...+.. +
T Consensus 341 --Rfd~ti~e~T~IkFMTDG---VLLrEi~~DflL~kYSvIIlDEAHERS-vnTDILiGmLSRiV~LR~k~~ke~~~~kp 414 (1172)
T KOG0926|consen 341 --RFDGTIGEDTSIKFMTDG---VLLREIENDFLLTKYSVIILDEAHERS-VNTDILIGMLSRIVPLRQKYYKEQCQIKP 414 (1172)
T ss_pred --EeccccCCCceeEEecch---HHHHHHHHhHhhhhceeEEechhhhcc-chHHHHHHHHHHHHHHHHHHhhhhcccCc
Confidence 122223346789999999 455665567789999999999999431 1222344455555444333333 8
Q ss_pred eEEEEEcCCCCChHHHHH---HhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeE
Q 043190 846 VRFIGLSTALANAGDLAD---WLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLI 922 (1492)
Q Consensus 846 ~~ii~lSATl~~~~~~~~---~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LI 922 (1492)
.++|.||||+- ..|+.+ .|.+.++ ++ ..+.|+.|+.+++.......|..... .....|....+.|.+||
T Consensus 415 LKLIIMSATLR-VsDFtenk~LFpi~pP-li--kVdARQfPVsIHF~krT~~DYi~eAf----rKtc~IH~kLP~G~ILV 486 (1172)
T KOG0926|consen 415 LKLIIMSATLR-VSDFTENKRLFPIPPP-LI--KVDARQFPVSIHFNKRTPDDYIAEAF----RKTCKIHKKLPPGGILV 486 (1172)
T ss_pred eeEEEEeeeEE-ecccccCceecCCCCc-ee--eeecccCceEEEeccCCCchHHHHHH----HHHHHHhhcCCCCcEEE
Confidence 99999999983 444432 2222222 22 33567778888776544333332110 11223455678899999
Q ss_pred EecChHHHHHHHHHHHHHHhcCCC-------Cccc-----------C-----CCChHHH-------HH------------
Q 043190 923 FVSSRRQTRLTALDLIQFAASDET-------PRQF-----------L-----GMPEEDL-------QM------------ 960 (1492)
Q Consensus 923 F~~s~~~~~~~a~~L~~~~~~~~~-------~~~~-----------~-----~~~~~~~-------~~------------ 960 (1492)
|+....++..++..|++..+..-. .+.+ . ....+.+ +.
T Consensus 487 FvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~ra 566 (1172)
T KOG0926|consen 487 FVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRA 566 (1172)
T ss_pred EEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhh
Confidence 999999999999999887431100 0000 0 0000000 00
Q ss_pred HHhhcCc---------------HHHHHH--------hccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCC
Q 043190 961 VLSQVTD---------------QNLRQT--------LQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1017 (1492)
Q Consensus 961 ~~~~~~~---------------~~l~~~--------~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdi 1017 (1492)
......| ..+... -+.-|.++++=|+.+++..|++....|..-++|||++++++++|
T Consensus 567 a~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTI 646 (1172)
T KOG0926|consen 567 AFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTI 646 (1172)
T ss_pred hhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhccccc
Confidence 0000000 001111 12348889999999999999999999999999999999999999
Q ss_pred CCcEEEEecc----eeeeCccC----ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH-HHHHhhcCCCceeec
Q 043190 1018 PAHLVIIKGT----EYYDGKTK----RYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS-FYKKFLYEPFPVESS 1088 (1492)
Q Consensus 1018 p~~~~VI~~~----~~~~~~~~----~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~-~~~~~l~~~~pies~ 1088 (1492)
|++.+||.+. ..||...+ ....+|.++.-||+|||||.| +|+||.+++..-.+ .+..+ ..| ..
T Consensus 647 PgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSAVf~~~Fe~f---S~P--EI 718 (1172)
T KOG0926|consen 647 PGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSAVFSNDFEEF---SLP--EI 718 (1172)
T ss_pred CCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhHHhhcchhhh---ccH--HH
Confidence 9999999764 45777655 113467889999999999997 99999998764322 11111 111 00
Q ss_pred ccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCC
Q 043190 1089 LRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTED 1168 (1492)
Q Consensus 1089 l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~~ 1168 (1492)
+.....+.++ ......|.. ..+| ...+++. ...++.|...|...|+++.++
T Consensus 719 lk~Pve~lvL-qMKsMnI~k---VvnF-------------------PFPtpPd-----~~~L~~Aer~L~~LgALd~~g- 769 (1172)
T KOG0926|consen 719 LKKPVESLVL-QMKSMNIDK---VVNF-------------------PFPTPPD-----RSALEKAERRLKALGALDSNG- 769 (1172)
T ss_pred hhCcHHHHHH-HHHhcCccc---eecC-------------------CCCCCcc-----HHHHHHHHHHHHHhccccccC-
Confidence 0000111111 111122221 1111 1111111 245778999999999997754
Q ss_pred ccccccchhhhhhccccHHHHHHHHhccCCC
Q 043190 1169 TVEPTMLGTIASQYYLSYVTVSMFGSNIGPD 1199 (1492)
Q Consensus 1169 ~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~ 1199 (1492)
.+|++|+.||.|+++|+-.+|+..+....
T Consensus 770 --~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~ 798 (1172)
T KOG0926|consen 770 --GLTKLGKAMSLFPLSPRFSKMLATSDQHN 798 (1172)
T ss_pred --CcccccchhcccccChhHHHHHHHHHhhc
Confidence 56999999999999999999998654433
No 87
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=2.5e-30 Score=279.23 Aligned_cols=334 Identities=19% Similarity=0.305 Sum_probs=235.8
Q ss_pred hhHhhhcCCCCC-CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHF-NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 678 ~~~~~~~~~~~l-~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
+.++..||+..| ++.|.+++..+...+++|.|++|||+||++||.+|.|-. ++..|++.|..+|..++.+.+.+
T Consensus 9 eaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----~gITIV~SPLiALIkDQiDHL~~ 83 (641)
T KOG0352|consen 9 EALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----GGITIVISPLIALIKDQIDHLKR 83 (641)
T ss_pred HHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----CCeEEEehHHHHHHHHHHHHHHh
Confidence 456788898877 889999999999889999999999999999999999876 67999999999999999988765
Q ss_pred HhhhccCCEEEEEcCCCCcchh---------ccCCCcEEEECchhh-----hHhhhcccCccccCcccEEEEecccccC-
Q 043190 757 RLVSQLGKEMVEMTGDYTPDLM---------ALLSADIIISTPEKW-----DGISRNWHSRNYVKKVGLMILDEIHLLG- 821 (1492)
Q Consensus 757 ~~~~~~g~~v~~~~g~~~~~~~---------~~~~~~Iiv~Tpe~l-----~~l~~~~~~~~~l~~i~liViDEaH~l~- 821 (1492)
+ .+.+..+.+..+...+ ......+++.|||.. ..++..... -+.++++|+||||+++
T Consensus 84 -L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~---r~~L~Y~vVDEAHCVSQ 155 (641)
T KOG0352|consen 84 -L----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLAN---RDVLRYIVVDEAHCVSQ 155 (641)
T ss_pred -c----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhh---hceeeeEEechhhhHhh
Confidence 2 4445555554433221 223568999999974 333333222 2467899999999984
Q ss_pred --CCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC--hHHHHHHhcCCcc-eeEecCCCcccc-CcEEEEeccCCcc
Q 043190 822 --AERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN--AGDLADWLGVGEI-GLFNFKPSVRPV-PLEVHIQGYPGKF 895 (1492)
Q Consensus 822 --~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~-~~~~~~~~~r~~-~l~~~~~~~~~~~ 895 (1492)
.++.|.+-.+ ..+|.. .+....++++||-.. -+|+..-|....+ .+|. .+.+|.. ...+++..+....
T Consensus 156 WGHDFRPDYL~L-G~LRS~----~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk-TP~FR~NLFYD~~~K~~I~D~ 229 (641)
T KOG0352|consen 156 WGHDFRPDYLTL-GSLRSV----CPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFK-TPTFRDNLFYDNHMKSFITDC 229 (641)
T ss_pred hccccCcchhhh-hhHHhh----CCCCceEEeecccChhHHHHHHHHHhhcCcHHhcc-CcchhhhhhHHHHHHHHhhhH
Confidence 3455555432 223322 347788999999754 4677777766543 2222 2233221 1111111000000
Q ss_pred ccccccccChhHHHHHh--------hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCc
Q 043190 896 YCPRMNSMNKPAYAAIC--------THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTD 967 (1492)
Q Consensus 896 ~~~~~~~~~~~~~~~l~--------~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 967 (1492)
+ ..+..-....+- .....+-.||||.||.+|+.+|..|
T Consensus 230 ~----~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l------------------------------ 275 (641)
T KOG0352|consen 230 L----TVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIML------------------------------ 275 (641)
T ss_pred h----HhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHh------------------------------
Confidence 0 000000111111 1122456899999999999999776
Q ss_pred HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHH
Q 043190 968 QNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQ 1047 (1492)
Q Consensus 968 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Q 1047 (1492)
.+.+.+...+|+||...+|..|.+.+.+|++.||+||..+++|||-|++++||+ |+++. +++-|.|
T Consensus 276 ----~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH----W~~~q------n~AgYYQ 341 (641)
T KOG0352|consen 276 ----EIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH----WSPSQ------NLAGYYQ 341 (641)
T ss_pred ----hhcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe----cCchh------hhHHHHH
Confidence 334677788999999999999999999999999999999999999999999998 66543 5889999
Q ss_pred hhcccCCCCCCCceEEEEEecCCcHHHHHHhhc
Q 043190 1048 MMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLY 1080 (1492)
Q Consensus 1048 r~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~ 1080 (1492)
..|||||.| ..+.|-+++..++.+.+.-++.
T Consensus 342 ESGRAGRDG--k~SyCRLYYsR~D~~~i~FLi~ 372 (641)
T KOG0352|consen 342 ESGRAGRDG--KRSYCRLYYSRQDKNALNFLVS 372 (641)
T ss_pred hccccccCC--CccceeeeecccchHHHHHHHh
Confidence 999999998 8899999999988776654443
No 88
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6e-31 Score=284.91 Aligned_cols=336 Identities=20% Similarity=0.267 Sum_probs=246.5
Q ss_pred ccCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHH
Q 043190 674 ALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 674 ~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q 749 (1492)
.|....++++. ||..|+|+|++.+|.++ .+++++-.|-||||||.||.+|+++.+..+ .+-+++++.|+|+||.|
T Consensus 27 gL~~~v~raI~kkg~~~ptpiqRKTipliL-e~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~q 105 (529)
T KOG0337|consen 27 GLDYKVLRAIHKKGFNTPTPIQRKTIPLIL-EGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQ 105 (529)
T ss_pred CCCHHHHHHHHHhhcCCCCchhccccccee-eccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHH
Confidence 45556777776 99999999999999999 789999999999999999999999988764 35699999999999999
Q ss_pred HHHHHHHHhhhccCCEEEEEcCCCCcchh--cc-CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCc
Q 043190 750 RMNDWKDRLVSQLGKEMVEMTGDYTPDLM--AL-LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERG 825 (1492)
Q Consensus 750 ~~~~~~~~~~~~~g~~v~~~~g~~~~~~~--~~-~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g 825 (1492)
..+.+++ ++...+.++.++.|+-..+.+ .+ .++|||++||+++..+.-... ..++.+.+||+||++.+-+ .+.
T Consensus 106 tlkvvkd-lgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~--l~l~sveyVVfdEadrlfemgfq 182 (529)
T KOG0337|consen 106 TLKVVKD-LGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMT--LTLSSVEYVVFDEADRLFEMGFQ 182 (529)
T ss_pred HHHHHHH-hccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehhee--ccccceeeeeehhhhHHHhhhhH
Confidence 9987776 777777787766664333322 22 378999999999876665533 4488999999999997743 465
Q ss_pred cHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcC--CcceeEecCCCccccCcEEEEeccCCcccccccccc
Q 043190 826 PILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGV--GEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM 903 (1492)
Q Consensus 826 ~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~--~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 903 (1492)
.++..+++++ +...|.+++|||+|+ ++.++-.. .++.++.. .++..+.......+.......
T Consensus 183 eql~e~l~rl-------~~~~QTllfSatlp~--~lv~fakaGl~~p~lVRl-------dvetkise~lk~~f~~~~~a~ 246 (529)
T KOG0337|consen 183 EQLHEILSRL-------PESRQTLLFSATLPR--DLVDFAKAGLVPPVLVRL-------DVETKISELLKVRFFRVRKAE 246 (529)
T ss_pred HHHHHHHHhC-------CCcceEEEEeccCch--hhHHHHHccCCCCceEEe-------ehhhhcchhhhhheeeeccHH
Confidence 6666666655 456699999999986 33333322 22111111 111111111111111111111
Q ss_pred Ch-hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeec
Q 043190 904 NK-PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHH 982 (1492)
Q Consensus 904 ~~-~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h 982 (1492)
+. .+...+......++++|||+|+..++.+...|.. .++++..++
T Consensus 247 K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~----------------------------------~g~~~s~iy 292 (529)
T KOG0337|consen 247 KEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRD----------------------------------FGGEGSDIY 292 (529)
T ss_pred HHHHHHHHHhccccccceeEEecccchHHHHHHHHHh----------------------------------cCCCccccc
Confidence 11 1222233334456899999999999888766533 266788889
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC--HHHHHHhhcccCCCCCCCc
Q 043190 983 AGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP--ITDILQMMGRAGRPQYDQH 1060 (1492)
Q Consensus 983 ~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~--~~~~~Qr~GRagR~g~~~~ 1060 (1492)
|.|++.-|..-...|..++..++|.|+++++|+|+|-..-||+ +|+| ..-|+||+||+.|+| ..
T Consensus 293 sslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin------------yd~p~~~klFvhRVgr~arag--rt 358 (529)
T KOG0337|consen 293 SSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN------------YDFPPDDKLFVHRVGRVARAG--RT 358 (529)
T ss_pred cccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc------------ccCCCCCceEEEEecchhhcc--cc
Confidence 9999999999999999999999999999999999999999998 3443 456899999999998 89
Q ss_pred eEEEEEecCCcHHHHHH
Q 043190 1061 GKAVILVHEPKKSFYKK 1077 (1492)
Q Consensus 1061 G~~i~l~~~~~~~~~~~ 1077 (1492)
|.+|.++.+.+..++..
T Consensus 359 g~aYs~V~~~~~~yl~D 375 (529)
T KOG0337|consen 359 GRAYSLVASTDDPYLLD 375 (529)
T ss_pred ceEEEEEecccchhhhh
Confidence 99999999887665443
No 89
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=4.7e-30 Score=294.87 Aligned_cols=257 Identities=27% Similarity=0.375 Sum_probs=185.7
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEE---------eeCC------chhHHHHHhh-
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIG---------ISEP------NFAARNELLS- 67 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~---------~~~~------~~~~~~~~~~- 67 (1492)
.|.++|+|+|||||||+.+||+|+..-....+.++-++|||.||.++++. +.++ ++.+.+..+.
T Consensus 263 lP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~ 342 (1041)
T KOG0948|consen 263 LPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRK 342 (1041)
T ss_pred ccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhc
Confidence 47899999999999999999999976444455556689999999766432 1121 1111111110
Q ss_pred --------------------------HHHHHHHHHHH-hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCch
Q 043190 68 --------------------------EICYKKVVDSL-RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHP 120 (1492)
Q Consensus 68 --------------------------~~~~~~~~~~~-~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~ 120 (1492)
.-+|..+.-.. .+..|+|||+.||++||..|.++.+.-...+.. ...
T Consensus 343 ~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deE------k~~ 416 (1041)
T KOG0948|consen 343 AGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEE------KEL 416 (1041)
T ss_pred cCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhH------HHH
Confidence 01232222222 346799999999999999999887642221100 000
Q ss_pred hhHHHHHHHhhcC--------chHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEe
Q 043190 121 QLSLIKKDVMKSR--------NKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIK 192 (1492)
Q Consensus 121 ~~~~~~~~~~~~~--------~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~ 192 (1492)
-...+..++.... -+.+.-+|++|||+||+||.|--++.||=+|.+|.+|||+||.|++.|+|+||.+||+.
T Consensus 417 V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT 496 (1041)
T KOG0948|consen 417 VETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT 496 (1041)
T ss_pred HHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe
Confidence 0111222222211 24567789999999999999999999999999999999999999999999999999999
Q ss_pred ccceecCCCCCccc-CchhhhhhccCCCCCCccceEEEEeCCccH-HHHHHHhcC-CCccccchhHhHHHHHHHHHH
Q 043190 193 GTQLYDPKAGGWRD-LGMLDIFGRAGRPQFDRSGEGIIITSHDKL-AYYLRLLTS-QLPIESQFISSLKDNLNAEVA 266 (1492)
Q Consensus 193 ~~~~~~~~~~~~~~-~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~-~~~~~~~~~-~~~ies~l~~~l~~~l~~ei~ 266 (1492)
..+.||++..+|-. -.|+||.|||||.|.|..|.+|++.+...- .....++.+ +.|+.|.++-.....||-.-+
T Consensus 497 ~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYnMiLNLlRv 573 (1041)
T KOG0948|consen 497 AVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYNMILNLLRV 573 (1041)
T ss_pred eccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHHHHHHHHHH
Confidence 99999998877644 569999999999999999999999987643 334445544 568999998877777775433
No 90
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=298.64 Aligned_cols=269 Identities=26% Similarity=0.344 Sum_probs=193.7
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeC-------------C----chhHH----
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISE-------------P----NFAAR---- 62 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~-------------~----~~~~~---- 62 (1492)
.|+++++|+||||+||..+||+|+|.-....++++++..|||||++++..-.+ . ++...
T Consensus 431 lP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~a 510 (1248)
T KOG0947|consen 431 LPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEA 510 (1248)
T ss_pred ccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccc
Confidence 58899999999999999999999998877888999999999999876542100 0 00000
Q ss_pred -----------H-------------HHh---------hH---HHHHHHHHHHhc--CCcEEEEEechHHHHHHHHHHHHH
Q 043190 63 -----------N-------------ELL---------SE---ICYKKVVDSLRQ--GHQAMVFVHSRKDTVKTAQKLVDL 104 (1492)
Q Consensus 63 -----------~-------------~~~---------~~---~~~~~~~~~~~~--~~~~lVF~~sr~~~~~~a~~l~~~ 104 (1492)
. ... +. ..+..++.++.. --|++|||.||+.|+..|+.|...
T Consensus 511 k~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~ 590 (1248)
T KOG0947|consen 511 KFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNL 590 (1248)
T ss_pred cccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhcc
Confidence 0 000 00 123334444433 358999999999999999998653
Q ss_pred HHhcCCccccCCCCchhhHHHHHHHh-hc--Cc------hHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEec
Q 043190 105 ARRYEDLEVFNNDTHPQLSLIKKDVM-KS--RN------KDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCT 175 (1492)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~------~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT 175 (1492)
-. ....+..+...+.+... .. .+ ..+++++.+|+|+||||+.|-.++.||.+|..|.+|||+||
T Consensus 591 nL-------~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFAT 663 (1248)
T KOG0947|consen 591 NL-------TDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFAT 663 (1248)
T ss_pred Cc-------ccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeeh
Confidence 21 11111222222222211 11 12 35788999999999999999999999999999999999999
Q ss_pred cccccccCCCcEEEEEeccceecCCCCC-cccCchhhhhhccCCCCCCccceEEEEeCCc--cHHHHHHH-hcCCCcccc
Q 043190 176 ATLAWGVNLPAHTVVIKGTQLYDPKAGG-WRDLGMLDIFGRAGRPQFDRSGEGIIITSHD--KLAYYLRL-LTSQLPIES 251 (1492)
Q Consensus 176 ~tla~Gvnlp~~~vVI~~~~~~~~~~~~-~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~--~~~~~~~~-~~~~~~ies 251 (1492)
.|+|+|||+||++||+.+....|+.... ..+-.|.||+|||||.|.|..|.+|+++... +...+.++ ++.+.+++|
T Consensus 664 ETFAMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~S 743 (1248)
T KOG0947|consen 664 ETFAMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLES 743 (1248)
T ss_pred hhhhhhcCCCceeEEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhhh
Confidence 9999999999999999999999986533 4556799999999999999999999999765 45555554 566779999
Q ss_pred chhHhHHHHHHHHHHhCcccCHHHHHHHhhhhh
Q 043190 252 QFISSLKDNLNAEVALGTVTNVKEACAWLGYTY 284 (1492)
Q Consensus 252 ~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~ 284 (1492)
++.-.....||-.-+ +...+-+-++++|
T Consensus 744 QFRlTY~MILnLLRv-----e~lrvEdm~krSf 771 (1248)
T KOG0947|consen 744 QFRLTYGMILNLLRV-----EALRVEDMMKRSF 771 (1248)
T ss_pred hhhhHHHHHHHHHHH-----HHHHHHHHHHHHh
Confidence 998765555553211 1134455566665
No 91
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.96 E-value=5.8e-29 Score=305.19 Aligned_cols=431 Identities=16% Similarity=0.179 Sum_probs=291.1
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE 768 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~ 768 (1492)
...+.+.+.++- ++++++|+|.||||||+.....|++... .++..++++..|+|--|..+++++....+...|..|+.
T Consensus 175 ~~~r~~Il~~i~-~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGY 253 (924)
T KOG0920|consen 175 YKMRDTILDAIE-ENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGY 253 (924)
T ss_pred HHHHHHHHHHHH-hCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeE
Confidence 445566666664 8899999999999999999999998653 33567899999999999999999988777666766655
Q ss_pred EcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEE
Q 043190 769 MTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRF 848 (1492)
Q Consensus 769 ~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~i 848 (1492)
..+-. ......+.+.+||.|.+. |.......+..+.++|+||+|.-+ ..-+.++-.++.+.. ..++.++
T Consensus 254 qvrl~---~~~s~~t~L~fcTtGvLL---r~L~~~~~l~~vthiivDEVHER~----i~~DflLi~lk~lL~-~~p~Lkv 322 (924)
T KOG0920|consen 254 QVRLE---SKRSRETRLLFCTTGVLL---RRLQSDPTLSGVTHIIVDEVHERS----INTDFLLILLKDLLP-RNPDLKV 322 (924)
T ss_pred EEeee---cccCCceeEEEecHHHHH---HHhccCcccccCceeeeeeEEEcc----CCcccHHHHHHHHhh-hCCCceE
Confidence 43321 222234889999999654 444446778999999999999543 222233333333332 3479999
Q ss_pred EEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEe-------cc---CCcccc-cc------------ccccCh
Q 043190 849 IGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQ-------GY---PGKFYC-PR------------MNSMNK 905 (1492)
Q Consensus 849 i~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~-------~~---~~~~~~-~~------------~~~~~~ 905 (1492)
|+||||+ |++.+..|||..+.- ....+..|+..++. .+ ....+. .. ....+.
T Consensus 323 ILMSAT~-dae~fs~YF~~~pvi----~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~ 397 (924)
T KOG0920|consen 323 ILMSATL-DAELFSDYFGGCPVI----TIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDY 397 (924)
T ss_pred EEeeeec-chHHHHHHhCCCceE----eecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccH
Confidence 9999998 689999999855431 11222222211110 00 000000 00 000111
Q ss_pred ----hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEee
Q 043190 906 ----PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLH 981 (1492)
Q Consensus 906 ----~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~ 981 (1492)
.+...+......+.+|||.|+..++..+...|....... ....+-+.++
T Consensus 398 ~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~---------------------------~~~~~~ilpl 450 (924)
T KOG0920|consen 398 DLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFA---------------------------DSLKFAILPL 450 (924)
T ss_pred HHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccc---------------------------cccceEEEec
Confidence 122333444567899999999999998887774322111 1124668899
Q ss_pred cCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecc----eeeeCccC----ccccCCHHHHHHhhcccC
Q 043190 982 HAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGT----EYYDGKTK----RYVDFPITDILQMMGRAG 1053 (1492)
Q Consensus 982 h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~----~~~~~~~~----~~~~~~~~~~~Qr~GRag 1053 (1492)
|+.|+..+++.|++....|..+|++||++++.+|+||++.+||... ..||+..+ ...+.|.++..||.||||
T Consensus 451 Hs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAG 530 (924)
T KOG0920|consen 451 HSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAG 530 (924)
T ss_pred cccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhccccc
Confidence 9999999999999999999999999999999999999999999764 46887654 224457889999999999
Q ss_pred CCCCCCceEEEEEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccC
Q 043190 1054 RPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYG 1133 (1492)
Q Consensus 1054 R~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~ 1133 (1492)
|. ..|.||.+++... |+++.. ..++.+.+...|.+..+..-+ ....+..+||+ ++...|.
T Consensus 531 Rv---~~G~cy~L~~~~~---~~~~~~-~~q~PEilR~pL~~l~L~iK~----l~~~~~~~fLs------kaldpP~--- 590 (924)
T KOG0920|consen 531 RV---RPGICYHLYTRSR---YEKLML-AYQLPEILRTPLEELCLHIKV----LEQGSIKAFLS------KALDPPP--- 590 (924)
T ss_pred Cc---cCCeeEEeechhh---hhhccc-ccCChHHHhChHHHhhheeee----ccCCCHHHHHH------HhcCCCC---
Confidence 98 5999999998754 444333 122223334434443322211 11122223333 2222221
Q ss_pred CCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCC
Q 043190 1134 LEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDT 1200 (1492)
Q Consensus 1134 ~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~ 1200 (1492)
.+.+..|+..|.+.|+++.++ .+|++|+.+|.+|+++.-.+++..+.-..+
T Consensus 591 -------------~~~v~~a~~~L~~igaL~~~e---~LT~LG~~la~lPvd~~igK~ll~g~if~c 641 (924)
T KOG0920|consen 591 -------------ADAVDLAIERLKQIGALDESE---ELTPLGLHLASLPVDVRIGKLLLFGAIFGC 641 (924)
T ss_pred -------------hHHHHHHHHHHHHhccccCcc---cchHHHHHHHhCCCccccchhheehhhccc
Confidence 245789999999999998877 569999999999999999999876544433
No 92
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=4.6e-29 Score=312.68 Aligned_cols=337 Identities=21% Similarity=0.298 Sum_probs=254.1
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
..+...||...|+|-|.+++..++ .|++++|.+|||+||++||.+|++-. ++..|+|.|..+|+..+...+..
T Consensus 254 ~~l~~~Fg~~~FR~~Q~eaI~~~l-~Gkd~fvlmpTG~GKSLCYQlPA~l~-----~gitvVISPL~SLm~DQv~~L~~- 326 (941)
T KOG0351|consen 254 LLLKEVFGHKGFRPNQLEAINATL-SGKDCFVLMPTGGGKSLCYQLPALLL-----GGVTVVISPLISLMQDQVTHLSK- 326 (941)
T ss_pred HHHHHHhccccCChhHHHHHHHHH-cCCceEEEeecCCceeeEeecccccc-----CCceEEeccHHHHHHHHHHhhhh-
Confidence 345667899999999999999888 89999999999999999999998765 67999999999999988776533
Q ss_pred hhhccCCEEEEEcCCCCcchh-------ccC--CCcEEEECchhhhHhhhcccCccccCc---ccEEEEecccccCCCCc
Q 043190 758 LVSQLGKEMVEMTGDYTPDLM-------ALL--SADIIISTPEKWDGISRNWHSRNYVKK---VGLMILDEIHLLGAERG 825 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~-------~~~--~~~Iiv~Tpe~l~~l~~~~~~~~~l~~---i~liViDEaH~l~~~~g 825 (1492)
. ++....+++......+ ... ..+|++.|||++...-+-......+.. +.++||||||++. .+|
T Consensus 327 ---~-~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS-qWg 401 (941)
T KOG0351|consen 327 ---K-GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS-QWG 401 (941)
T ss_pred ---c-CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh-hhc
Confidence 2 7888888887665311 112 569999999987432222111222333 8999999999984 344
Q ss_pred cHHHHHHHHHHHhhhccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccccccc
Q 043190 826 PILEVIVSRMRYISSQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSM 903 (1492)
Q Consensus 826 ~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~ 903 (1492)
..++.-..++..+....+ ...+|++|||... .+|+.+-|+.....++. ..+.+..+...+..-.. ...
T Consensus 402 HdFRp~Yk~l~~l~~~~~-~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~--~sfnR~NL~yeV~~k~~-------~~~ 471 (941)
T KOG0351|consen 402 HDFRPSYKRLGLLRIRFP-GVPFIALTATATERVREDVIRSLGLRNPELFK--SSFNRPNLKYEVSPKTD-------KDA 471 (941)
T ss_pred ccccHHHHHHHHHHhhCC-CCCeEEeehhccHHHHHHHHHHhCCCCcceec--ccCCCCCceEEEEeccC-------ccc
Confidence 444444444443333332 4789999999744 68999999988766543 33333333333321111 111
Q ss_pred ChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecC
Q 043190 904 NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHA 983 (1492)
Q Consensus 904 ~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~ 983 (1492)
.......+....+...+||||.++++|+.++..|... +...++||+
T Consensus 472 ~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~----------------------------------~~~a~~YHA 517 (941)
T KOG0351|consen 472 LLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSL----------------------------------GKSAAFYHA 517 (941)
T ss_pred hHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHh----------------------------------chhhHhhhc
Confidence 1223444566678899999999999999999888553 356789999
Q ss_pred CCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEE
Q 043190 984 GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKA 1063 (1492)
Q Consensus 984 ~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~ 1063 (1492)
||++.+|..|.+.|..++++|+|||=++++|||.|+|+.||+ |+ .+-+++.|.|-+|||||.| ....|
T Consensus 518 Gl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH----~~------lPks~E~YYQE~GRAGRDG--~~s~C 585 (941)
T KOG0351|consen 518 GLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH----YS------LPKSFEGYYQEAGRAGRDG--LPSSC 585 (941)
T ss_pred CCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEE----CC------CchhHHHHHHhccccCcCC--Cccee
Confidence 999999999999999999999999999999999999999998 33 2235889999999999998 88999
Q ss_pred EEEecCCcHHHHHHhhcCC
Q 043190 1064 VILVHEPKKSFYKKFLYEP 1082 (1492)
Q Consensus 1064 i~l~~~~~~~~~~~~l~~~ 1082 (1492)
++++...+......++...
T Consensus 586 ~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 586 VLLYGYADISELRRLLTSG 604 (941)
T ss_pred EEecchhHHHHHHHHHHcc
Confidence 9999998888888888665
No 93
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.96 E-value=3.3e-28 Score=290.06 Aligned_cols=338 Identities=20% Similarity=0.310 Sum_probs=216.9
Q ss_pred CCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
.-.++++|.+....++ ++|+||++|||+|||++|...++.++...+++++|+++|++-|+.|+...+...+. +..
T Consensus 60 ~~~lR~YQ~eivq~AL--gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~---~~~ 134 (746)
T KOG0354|consen 60 NLELRNYQEELVQPAL--GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLI---PYS 134 (746)
T ss_pred cccccHHHHHHhHHhh--cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccC---ccc
Confidence 3469999999999988 89999999999999999999999999998899999999999999999865554332 233
Q ss_pred EEEEcCC-CCcch--hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhcc
Q 043190 766 MVEMTGD-YTPDL--MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 766 v~~~~g~-~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~ 842 (1492)
+....|| ..... ......+|+|+||+.+..-+.+..... ++.+.++||||||+-. ....|..++..+....
T Consensus 135 ~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~-ls~fs~iv~DE~Hra~--kn~~Y~~Vmr~~l~~k--- 208 (746)
T KOG0354|consen 135 VTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDE-LSDFSLIVFDECHRTS--KNHPYNNIMREYLDLK--- 208 (746)
T ss_pred ceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccc-cceEEEEEEccccccc--ccccHHHHHHHHHHhh---
Confidence 4344444 32222 223477999999998866666544433 7899999999999763 2234555553333222
Q ss_pred CCceEEEEEcCCCCC-hHHHHHHh---cCC----cceeE----ec--CCCccccCcEEE---------------------
Q 043190 843 ERAVRFIGLSTALAN-AGDLADWL---GVG----EIGLF----NF--KPSVRPVPLEVH--------------------- 887 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~-~~~~~~~l---~~~----~~~~~----~~--~~~~r~~~l~~~--------------------- 887 (1492)
....|++|||||+++ .+.+.+.. .+. ....+ .. .....|+++...
T Consensus 209 ~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~ 288 (746)
T KOG0354|consen 209 NQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQE 288 (746)
T ss_pred hccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHh
Confidence 224499999999986 22222211 110 00000 00 000000000000
Q ss_pred ------------------------EeccCCccc--------------------------------------ccc--c---
Q 043190 888 ------------------------IQGYPGKFY--------------------------------------CPR--M--- 900 (1492)
Q Consensus 888 ------------------------~~~~~~~~~--------------------------------------~~~--~--- 900 (1492)
..+++.... ... .
T Consensus 289 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~ 368 (746)
T KOG0354|consen 289 EGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLEL 368 (746)
T ss_pred cCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHh
Confidence 000000000 000 0
Q ss_pred ---------cccC------------hhHH----HHH---hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCC
Q 043190 901 ---------NSMN------------KPAY----AAI---CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG 952 (1492)
Q Consensus 901 ---------~~~~------------~~~~----~~l---~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~ 952 (1492)
..|+ .+.+ ..+ ....+..++||||.+|..|..+...|.+.....-.+..|
T Consensus 369 e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~f-- 446 (746)
T KOG0354|consen 369 EARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIF-- 446 (746)
T ss_pred cchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhccccccee--
Confidence 0000 0000 000 012456789999999999998888775422111111111
Q ss_pred CChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeC
Q 043190 953 MPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDG 1032 (1492)
Q Consensus 953 ~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~ 1032 (1492)
.|.+-..-..+|++.++.++++.|++|+++|||||+++++|+|++.+++||. ||-
T Consensus 447 ---------------------iGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc----Yd~ 501 (746)
T KOG0354|consen 447 ---------------------IGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECNLVIC----YDY 501 (746)
T ss_pred ---------------------eeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcccccEEEE----ecC
Confidence 1222222337999999999999999999999999999999999999999998 553
Q ss_pred ccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1033 KTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1033 ~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
.. +....+||.|| ||+ +.|+|+++++...
T Consensus 502 ~s------npIrmIQrrGR-gRa---~ns~~vll~t~~~ 530 (746)
T KOG0354|consen 502 SS------NPIRMVQRRGR-GRA---RNSKCVLLTTGSE 530 (746)
T ss_pred Cc------cHHHHHHHhcc-ccc---cCCeEEEEEcchh
Confidence 22 47889999999 997 6899999998444
No 94
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=1.2e-27 Score=294.52 Aligned_cols=312 Identities=17% Similarity=0.186 Sum_probs=199.9
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
..|+++|.++++.++ .+++.++++|||+|||+++...+...+. ....++|+++||++|+.|..+++.+.. ......+
T Consensus 113 ~~~r~~Q~~av~~~l-~~~~~il~apTGsGKT~i~~~l~~~~~~-~~~~~vLilvpt~eL~~Q~~~~l~~~~-~~~~~~~ 189 (501)
T PHA02558 113 IEPHWYQYDAVYEGL-KNNRRLLNLPTSAGKSLIQYLLSRYYLE-NYEGKVLIIVPTTSLVTQMIDDFVDYR-LFPREAM 189 (501)
T ss_pred CCCCHHHHHHHHHHH-hcCceEEEeCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECcHHHHHHHHHHHHHhc-cccccce
Confidence 469999999999988 5678999999999999987653322232 234599999999999999999987743 2212334
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCce
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAV 846 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~ 846 (1492)
..+.|+.... .+.+|+|+||+++.... ..++++++++|+||||++.. ..+..++..+ +...
T Consensus 190 ~~i~~g~~~~----~~~~I~VaT~qsl~~~~-----~~~~~~~~~iIvDEaH~~~~---~~~~~il~~~-------~~~~ 250 (501)
T PHA02558 190 HKIYSGTAKD----TDAPIVVSTWQSAVKQP-----KEWFDQFGMVIVDECHLFTG---KSLTSIITKL-------DNCK 250 (501)
T ss_pred eEEecCcccC----CCCCEEEeeHHHHhhch-----hhhccccCEEEEEchhcccc---hhHHHHHHhh-------hccc
Confidence 3333333221 35799999999875322 23468899999999998853 3455554433 2356
Q ss_pred EEEEEcCCCCChHH----HHHHhcCCcceeEecC---CCccccCcEEE--EeccCC--------ccccccc----cc--c
Q 043190 847 RFIGLSTALANAGD----LADWLGVGEIGLFNFK---PSVRPVPLEVH--IQGYPG--------KFYCPRM----NS--M 903 (1492)
Q Consensus 847 ~ii~lSATl~~~~~----~~~~l~~~~~~~~~~~---~~~r~~~l~~~--~~~~~~--------~~~~~~~----~~--~ 903 (1492)
+++|+|||+.+... +..++|.-... .... ......+.... ...++. ..+.... .. .
T Consensus 251 ~~lGLTATp~~~~~~~~~~~~~fG~i~~~-v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 251 FKFGLTGSLRDGKANILQYVGLFGDIFKP-VTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred eEEEEeccCCCccccHHHHHHhhCCceEE-ecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 78999999965321 22334311100 0000 00000011110 000110 0000000 00 0
Q ss_pred ChhHHHHHh-hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeec
Q 043190 904 NKPAYAAIC-THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHH 982 (1492)
Q Consensus 904 ~~~~~~~l~-~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h 982 (1492)
+..+...+. ....+++++||+++.++++.++..|.+ .+..+..+|
T Consensus 330 n~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~----------------------------------~g~~v~~i~ 375 (501)
T PHA02558 330 NKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKK----------------------------------VYDKVYYVS 375 (501)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHH----------------------------------cCCCEEEEe
Confidence 000111111 113567899999999999888877743 256789999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEec-cccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCce
Q 043190 983 AGLNDKDRSLVEELFANNKIQVLVCT-STLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHG 1061 (1492)
Q Consensus 983 ~~l~~~~R~~v~~~f~~g~~~vLvaT-~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G 1061 (1492)
|+++.++|..+++.|++|+..||||| +++++|+|+|++++||. +.|.. +...|+||+||++|.+. .+.
T Consensus 376 G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl----~~p~~------s~~~~~QriGR~~R~~~-~K~ 444 (501)
T PHA02558 376 GEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF----AHPSK------SKIIVLQSIGRVLRKHG-SKS 444 (501)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE----ecCCc------chhhhhhhhhccccCCC-CCc
Confidence 99999999999999999999999998 89999999999999996 33322 46789999999999873 233
Q ss_pred EEEEE
Q 043190 1062 KAVIL 1066 (1492)
Q Consensus 1062 ~~i~l 1066 (1492)
.|.++
T Consensus 445 ~~~i~ 449 (501)
T PHA02558 445 IATVW 449 (501)
T ss_pred eEEEE
Confidence 44444
No 95
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=5.2e-27 Score=257.91 Aligned_cols=437 Identities=18% Similarity=0.197 Sum_probs=285.8
Q ss_pred HHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcC
Q 043190 692 IQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTG 771 (1492)
Q Consensus 692 ~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g 771 (1492)
-|++-|-.++.+++-+++.|.||||||+......+...... ...+.+..|.|..|.+++.++...+.-.+|..|+..
T Consensus 50 ~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGys-- 126 (699)
T KOG0925|consen 50 EQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-LTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYS-- 126 (699)
T ss_pred HhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-ccceeecCchHHHHHHHHHHHHHHhccccchhcccc--
Confidence 45666777777889999999999999999888887765543 478899999999999999988877644444444332
Q ss_pred CCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEE
Q 043190 772 DYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGL 851 (1492)
Q Consensus 772 ~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~l 851 (1492)
...+.....++-+-+||.++ ++|.......+.++++||+|||| +|....+.+...++.+.... ++.++|.|
T Consensus 127 -IrfEdC~~~~T~Lky~tDgm---LlrEams~p~l~~y~viiLDeah----ERtlATDiLmGllk~v~~~r-pdLk~vvm 197 (699)
T KOG0925|consen 127 -IRFEDCTSPNTLLKYCTDGM---LLREAMSDPLLGRYGVIILDEAH----ERTLATDILMGLLKEVVRNR-PDLKLVVM 197 (699)
T ss_pred -ccccccCChhHHHHHhcchH---HHHHHhhCcccccccEEEechhh----hhhHHHHHHHHHHHHHHhhC-CCceEEEe
Confidence 22222222334455778774 45555567789999999999999 66666777777777666544 59999999
Q ss_pred cCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHH
Q 043190 852 STALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTR 931 (1492)
Q Consensus 852 SATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~ 931 (1492)
|||+ .+..+..|++..+. ..... ..|.++.+..-+...+.. +. ......|......|.+|||.++.++.+
T Consensus 198 Satl-~a~Kfq~yf~n~Pl--l~vpg---~~PvEi~Yt~e~erDylE---aa-irtV~qih~~ee~GDilvFLtgeeeIe 267 (699)
T KOG0925|consen 198 SATL-DAEKFQRYFGNAPL--LAVPG---THPVEIFYTPEPERDYLE---AA-IRTVLQIHMCEEPGDILVFLTGEEEIE 267 (699)
T ss_pred eccc-chHHHHHHhCCCCe--eecCC---CCceEEEecCCCChhHHH---HH-HHHHHHHHhccCCCCEEEEecCHHHHH
Confidence 9998 67888888876552 22221 234444332222222221 11 112333444566889999999999999
Q ss_pred HHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc---C--CceEEE
Q 043190 932 LTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN---N--KIQVLV 1006 (1492)
Q Consensus 932 ~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~---g--~~~vLv 1006 (1492)
..++.+.....+- ........|.++| +.++..+++.... | ..+|+|
T Consensus 268 ~aC~~i~re~~~L-------------------------~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVv 318 (699)
T KOG0925|consen 268 DACRKISREVDNL-------------------------GPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVV 318 (699)
T ss_pred HHHHHHHHHHHhh-------------------------ccccCCceEEecC----chhhccccCCCCcccCCCccceEEE
Confidence 8888775432211 1122345677777 5555555554432 2 368999
Q ss_pred eccccccccCCCCcEEEEec----ceeeeCccC----ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHh
Q 043190 1007 CTSTLAWGVNLPAHLVIIKG----TEYYDGKTK----RYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1007 aT~~l~~Gvdip~~~~VI~~----~~~~~~~~~----~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~ 1078 (1492)
+|++++.++.++++.+||.. .+.|+|+.+ -..++|.++..||.|||||. .+|.|+.++++.- +++-
T Consensus 319 stniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGkcfrLYte~~---~~~e 392 (699)
T KOG0925|consen 319 STNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEA---FEKE 392 (699)
T ss_pred EecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCceEEeecHHh---hhhc
Confidence 99999999999999999963 367888755 23467899999999999997 6999999987633 3322
Q ss_pred h-cCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHh
Q 043190 1079 L-YEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDL 1157 (1492)
Q Consensus 1079 l-~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L 1157 (1492)
+ ....| .-+..+|...++..-..| .+ ++.+++.-+.. --+.++.|++.|
T Consensus 393 m~~~typ--eilrsNL~s~VL~LKklg----I~-----------------dlvhfdfmDpP-------APEtLMrALE~L 442 (699)
T KOG0925|consen 393 MQPQTYP--EILRSNLSSTVLQLKKLG----ID-----------------DLVHFDFMDPP-------APETLMRALEVL 442 (699)
T ss_pred CCCCCcH--HHHHHhhHHHHHHHHhcC----cc-----------------cccCCcCCCCC-------ChHHHHHHHHHh
Confidence 2 22222 122222222222111111 11 12222222211 124567889999
Q ss_pred HHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHH---HHhCCCCCCCCcCCCC
Q 043190 1158 EDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLH---ILSGASEYDELPVRHN 1223 (1492)
Q Consensus 1158 ~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~---ils~a~Ef~~i~~R~~ 1223 (1492)
.-.+++.-+++. |++|.+||.|+++|..+++++.+...+++- ++|. +++...- .+|.+
T Consensus 443 nYLaaLdDdGnL---T~lG~imSEFPLdPqLAkmLi~S~efnCsn-EiLsisAMLsvPnc----FvRp~ 503 (699)
T KOG0925|consen 443 NYLAALDDDGNL---TSLGEIMSEFPLDPQLAKMLIGSCEFNCSN-EILSISAMLSVPNC----FVRPT 503 (699)
T ss_pred hhhhhhCCCccc---chhhhhhhcCCCChHHHHHHhhcCCCCchH-HHHHHHhcccCCcc----ccCCC
Confidence 999998655554 999999999999999999999887766654 4443 4444444 44554
No 96
>PRK14701 reverse gyrase; Provisional
Probab=99.95 E-value=5.6e-27 Score=312.52 Aligned_cols=335 Identities=17% Similarity=0.139 Sum_probs=217.6
Q ss_pred hHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 679 IYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 679 ~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
.++..+|| .|+++|.++++.++ .|++++++||||||||++++.+.+.... ++.++++++||++|+.|+++.+....
T Consensus 71 ~f~~~~G~-~pt~iQ~~~i~~il-~G~d~li~APTGsGKTl~~~~~al~~~~--~g~~aLVl~PTreLa~Qi~~~l~~l~ 146 (1638)
T PRK14701 71 FFEKITGF-EFWSIQKTWAKRIL-RGKSFSIVAPTGMGKSTFGAFIALFLAL--KGKKCYIILPTTLLVKQTVEKIESFC 146 (1638)
T ss_pred HHHHhhCC-CCCHHHHHHHHHHH-cCCCEEEEEcCCCCHHHHHHHHHHHHHh--cCCeEEEEECHHHHHHHHHHHHHHHH
Confidence 34455599 59999999999999 7899999999999999976665554432 36799999999999999999998744
Q ss_pred hhc-cCCEEEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC--------
Q 043190 759 VSQ-LGKEMVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-------- 822 (1492)
Q Consensus 759 ~~~-~g~~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-------- 822 (1492)
... .+.++..++|+.+...+. ...++|+|+||+++...+... ...+++++||||||++..
T Consensus 147 ~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l----~~~~i~~iVVDEAD~ml~~~knid~~ 222 (1638)
T PRK14701 147 EKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM----KHLKFDFIFVDDVDAFLKASKNIDRS 222 (1638)
T ss_pred hhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH----hhCCCCEEEEECceeccccccccchh
Confidence 332 256778888887654321 125899999999876554431 126789999999998753
Q ss_pred ----CCccHHHH----HHH---------------HHHHhhhccCCceE-EEEEcCCCCChHHHHHHhcCCcceeEecCCC
Q 043190 823 ----ERGPILEV----IVS---------------RMRYISSQTERAVR-FIGLSTALANAGDLADWLGVGEIGLFNFKPS 878 (1492)
Q Consensus 823 ----~~g~~~~~----i~~---------------~l~~~~~~~~~~~~-ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~ 878 (1492)
++.+.+.. ++. .++......+...+ ++.+|||.+...+...++.... .+.....
T Consensus 223 L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l--~f~v~~~ 300 (1638)
T PRK14701 223 LQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL--GFEVGSG 300 (1638)
T ss_pred hhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe--EEEecCC
Confidence 33333332 111 11111112233444 5778999986555555552111 1211111
Q ss_pred ccccC-cEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHH---HHHHHHHHHHHhcCCCCcccCCCC
Q 043190 879 VRPVP-LEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQT---RLTALDLIQFAASDETPRQFLGMP 954 (1492)
Q Consensus 879 ~r~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~---~~~a~~L~~~~~~~~~~~~~~~~~ 954 (1492)
..... +...+.. .. ... ...+...+... +.++||||+|++.+ +.++..|.+
T Consensus 301 ~~~lr~i~~~yi~------~~-~~~-k~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~la~~L~~--------------- 355 (1638)
T PRK14701 301 RSALRNIVDVYLN------PE-KII-KEHVRELLKKL--GKGGLIFVPIDEGAEKAEEIEKYLLE--------------- 355 (1638)
T ss_pred CCCCCCcEEEEEE------CC-HHH-HHHHHHHHHhC--CCCeEEEEeccccchHHHHHHHHHHH---------------
Confidence 10111 1111100 00 000 11222333332 46899999998864 677766633
Q ss_pred hHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEec----cccccccCCCC-cEEEEeccee
Q 043190 955 EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCT----STLAWGVNLPA-HLVIIKGTEY 1029 (1492)
Q Consensus 955 ~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT----~~l~~Gvdip~-~~~VI~~~~~ 1029 (1492)
.++.+..+||+ |..+++.|++|+++||||| ++++||||+|+ +++||+
T Consensus 356 -------------------~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~---- 407 (1638)
T PRK14701 356 -------------------DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVF---- 407 (1638)
T ss_pred -------------------CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEE----
Confidence 26788999985 8899999999999999999 58999999998 999997
Q ss_pred eeCccCccccCCHH-------------HHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcC
Q 043190 1030 YDGKTKRYVDFPIT-------------DILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1030 ~~~~~~~~~~~~~~-------------~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~ 1081 (1492)
|+.|..+ +++. ...++.|||||.| ..+.++..+........++++..
T Consensus 408 ~~~Pk~~---~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g--~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 408 YGVPKFR---FRVDLEDPTIYRILGLLSEILKIEEELKEG--IPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred eCCCCCC---cchhhcccchhhhhcchHHHHHhhhhcccC--CcchhHHHhHHHHHHHHHHHhcc
Confidence 6655421 2222 2456679999988 56666655445555556666554
No 97
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.95 E-value=3.3e-27 Score=250.69 Aligned_cols=336 Identities=21% Similarity=0.306 Sum_probs=242.8
Q ss_pred CCccccccCchhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHH
Q 043190 668 KPLPVTALGNNIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 668 ~~~~~~~l~~~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La 747 (1492)
..+|.+.-...+++..|..+.|+|.|..+++..+ .+.++++..|||.||++||.+|.+.. .+-+++++|..+|+
T Consensus 74 d~fpws~e~~~ilk~~f~lekfrplq~~ain~~m-a~ed~~lil~tgggkslcyqlpal~a-----dg~alvi~plislm 147 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQFHLEKFRPLQLAAINATM-AGEDAFLILPTGGGKSLCYQLPALCA-----DGFALVICPLISLM 147 (695)
T ss_pred CCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhh-ccCceEEEEeCCCccchhhhhhHHhc-----CCceEeechhHHHH
Confidence 3455555556788888899999999999999998 88999999999999999999999875 78999999999999
Q ss_pred HHHHHHHHHHhhhccCCEEEEEcCCCCcchh---------ccCCCcEEEECchhhh---HhhhcccCccccCcccEEEEe
Q 043190 748 RERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---------ALLSADIIISTPEKWD---GISRNWHSRNYVKKVGLMILD 815 (1492)
Q Consensus 748 ~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---------~~~~~~Iiv~Tpe~l~---~l~~~~~~~~~l~~i~liViD 815 (1492)
..+.-.+++ + |+....+....+.+.. ...+..+++.|||++. .++.+.........+.+|-||
T Consensus 148 edqil~lkq-l----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaid 222 (695)
T KOG0353|consen 148 EDQILQLKQ-L----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAID 222 (695)
T ss_pred HHHHHHHHH-h----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeec
Confidence 988777665 2 7666555554432211 1124589999999873 222222222234578899999
Q ss_pred cccccC---CCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEecCCCccccCcEEEEec
Q 043190 816 EIHLLG---AERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQG 890 (1492)
Q Consensus 816 EaH~l~---~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~ 890 (1492)
|+|+-+ .++.+.+..+ ..+++ + -++..++|++||..| .+|..+.|++... +.|...+....+...+..
T Consensus 223 evhccsqwghdfr~dy~~l-~ilkr---q-f~~~~iigltatatn~vl~d~k~il~ie~~--~tf~a~fnr~nl~yev~q 295 (695)
T KOG0353|consen 223 EVHCCSQWGHDFRPDYKAL-GILKR---Q-FKGAPIIGLTATATNHVLDDAKDILCIEAA--FTFRAGFNRPNLKYEVRQ 295 (695)
T ss_pred ceeehhhhCcccCcchHHH-HHHHH---h-CCCCceeeeehhhhcchhhHHHHHHhHHhh--heeecccCCCCceeEeee
Confidence 999763 4555655532 22322 1 247789999999876 5677777766543 334444444444443332
Q ss_pred cCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHH
Q 043190 891 YPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNL 970 (1492)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 970 (1492)
-|+.. ..........+...-.+...||||-|+++|+.++..|..
T Consensus 296 kp~n~-----dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn------------------------------- 339 (695)
T KOG0353|consen 296 KPGNE-----DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKN------------------------------- 339 (695)
T ss_pred CCCCh-----HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHh-------------------------------
Confidence 22211 111112233344445677899999999999999988733
Q ss_pred HHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHH---
Q 043190 971 RQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQ--- 1047 (1492)
Q Consensus 971 ~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Q--- 1047 (1492)
++...+.+|+.|.+++|.-+-+.+..|+++|+|||-.+++|||-|++++||+.. .+-|+..|.|
T Consensus 340 ---~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhs----------l~ksienyyqasa 406 (695)
T KOG0353|consen 340 ---HGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHS----------LPKSIENYYQASA 406 (695)
T ss_pred ---cCccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecc----------cchhHHHHHHHHH
Confidence 467788999999999999999999999999999999999999999999999832 3335778888
Q ss_pred ----------------------------------------hhcccCCCCCCCceEEEEEecCCcH
Q 043190 1048 ----------------------------------------MMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1048 ----------------------------------------r~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
..|||||.+ .+..|++++.-.+.
T Consensus 407 rillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~--~~a~cilyy~~~di 469 (695)
T KOG0353|consen 407 RILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDD--MKADCILYYGFADI 469 (695)
T ss_pred HHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCC--CcccEEEEechHHH
Confidence 789999976 78999998765543
No 98
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.95 E-value=4.8e-26 Score=278.75 Aligned_cols=317 Identities=17% Similarity=0.234 Sum_probs=202.1
Q ss_pred CCCHHHHHHHHhhhcCC--CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 688 HFNPIQTQIFHILYHTD--NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~--~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
.++|+|.+++..++.++ ++.++++|||+|||++++.++... +.++||+||+..|+.|..+++.+.+. .....
T Consensus 255 ~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~-l~~~~ 328 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWST-IDDSQ 328 (732)
T ss_pred CcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcC-CCCce
Confidence 58999999999988554 478999999999999998766543 56899999999999998888776432 22356
Q ss_pred EEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccC----cccc--CcccEEEEecccccCCCCccHHHHHHHHHHHhh
Q 043190 766 MVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHS----RNYV--KKVGLMILDEIHLLGAERGPILEVIVSRMRYIS 839 (1492)
Q Consensus 766 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~----~~~l--~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~ 839 (1492)
+..++|+.... .....+|+|+|+..+.....+... ...+ ..+++||+||||++.. ..+..++..+.
T Consensus 329 I~~~tg~~k~~--~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA---~~fr~il~~l~--- 400 (732)
T TIGR00603 329 ICRFTSDAKER--FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA---AMFRRVLTIVQ--- 400 (732)
T ss_pred EEEEecCcccc--cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH---HHHHHHHHhcC---
Confidence 77777754321 123478999999876432222100 0112 3678999999998842 23333333321
Q ss_pred hccCCceEEEEEcCCCCChH----HHHHHhcCCcceeEecCC-------CccccCcEEEEeccCCccccc----------
Q 043190 840 SQTERAVRFIGLSTALANAG----DLADWLGVGEIGLFNFKP-------SVRPVPLEVHIQGYPGKFYCP---------- 898 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~~~----~~~~~l~~~~~~~~~~~~-------~~r~~~l~~~~~~~~~~~~~~---------- 898 (1492)
....+|||||+...+ ++...+|.. ++.... -.-++.............+..
T Consensus 401 -----a~~RLGLTATP~ReD~~~~~L~~LiGP~---vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~ 472 (732)
T TIGR00603 401 -----AHCKLGLTATLVREDDKITDLNFLIGPK---LYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRM 472 (732)
T ss_pred -----cCcEEEEeecCcccCCchhhhhhhcCCe---eeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhh
Confidence 335699999986432 232223321 111110 000111000011111100000
Q ss_pred cccccChhHHH---HHh-hc-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHH
Q 043190 899 RMNSMNKPAYA---AIC-TH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQT 973 (1492)
Q Consensus 899 ~~~~~~~~~~~---~l~-~~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 973 (1492)
....++...+. .+. .+ ..+.++||||.+...+..++..|
T Consensus 473 ~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L------------------------------------ 516 (732)
T TIGR00603 473 LLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL------------------------------------ 516 (732)
T ss_pred HHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc------------------------------------
Confidence 00112211111 122 22 36789999999988777666443
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcC-CceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhccc
Q 043190 974 LQFGIGLHHAGLNDKDRSLVEELFANN-KIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRA 1052 (1492)
Q Consensus 974 ~~~~v~~~h~~l~~~~R~~v~~~f~~g-~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRa 1052 (1492)
++.++||+++..+|..+++.|++| .+++||+|+++.+|+|+|++++||+ ++++.+ +..+|+||+||+
T Consensus 517 ---~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~~~g-----S~~q~iQRlGRi 584 (732)
T TIGR00603 517 ---GKPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----ISSHYG-----SRRQEAQRLGRI 584 (732)
T ss_pred ---CCceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEE----eCCCCC-----CHHHHHHHhccc
Confidence 345689999999999999999975 8899999999999999999999997 443322 688999999999
Q ss_pred CCCCCCCc-----eEEEEEecCCcHHH
Q 043190 1053 GRPQYDQH-----GKAVILVHEPKKSF 1074 (1492)
Q Consensus 1053 gR~g~~~~-----G~~i~l~~~~~~~~ 1074 (1492)
+|++.+.. ...|.+++.+..+.
T Consensus 585 lR~~~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 585 LRAKKGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred ccCCCCCccccccceEEEEecCCchHH
Confidence 99984322 33477887766543
No 99
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=1.2e-25 Score=264.19 Aligned_cols=318 Identities=20% Similarity=0.337 Sum_probs=224.5
Q ss_pred CCCCCCHHHHHHHHhhhc---C--CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 685 NFSHFNPIQTQIFHILYH---T--DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~---~--~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
+|+ ||.-|.+++..+.. + ..+=+++|.-|||||+++.++++..+.. |.++..++||--||.|.++.+.+.|.
T Consensus 260 PF~-LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--G~Q~ALMAPTEILA~QH~~~~~~~l~ 336 (677)
T COG1200 260 PFK-LTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--GYQAALMAPTEILAEQHYESLRKWLE 336 (677)
T ss_pred CCC-ccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--CCeeEEeccHHHHHHHHHHHHHHHhh
Confidence 776 99999999998862 1 2467999999999999999999999875 89999999999999999999999888
Q ss_pred hccCCEEEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHH
Q 043190 760 SQLGKEMVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIV 832 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~ 832 (1492)
+. |++|..++|......+. ....+|+|+|.. ++.. ...+++++++|+||=|+.+- .
T Consensus 337 ~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----LiQd---~V~F~~LgLVIiDEQHRFGV---------~ 399 (677)
T COG1200 337 PL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LIQD---KVEFHNLGLVIIDEQHRFGV---------H 399 (677)
T ss_pred hc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hhhc---ceeecceeEEEEeccccccH---------H
Confidence 87 89999999987654322 235799999974 4443 34588999999999997752 2
Q ss_pred HHHHHhhhccCC-ceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHH
Q 043190 833 SRMRYISSQTER-AVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI 911 (1492)
Q Consensus 833 ~~l~~~~~~~~~-~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 911 (1492)
.|..-.. .+. .+.++.||||+-.-.-....+|--+..++.--|..| .|+....... ......+..+
T Consensus 400 QR~~L~~--KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GR-kpI~T~~i~~----------~~~~~v~e~i 466 (677)
T COG1200 400 QRLALRE--KGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGR-KPITTVVIPH----------ERRPEVYERI 466 (677)
T ss_pred HHHHHHH--hCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCC-CceEEEEecc----------ccHHHHHHHH
Confidence 2222111 133 688999999974422222333333333332222222 2232222110 1112233333
Q ss_pred h-hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHH-HhccceEeecCCCCHHH
Q 043190 912 C-THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQ-TLQFGIGLHHAGLNDKD 989 (1492)
Q Consensus 912 ~-~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~v~~~h~~l~~~~ 989 (1492)
. ....++++.+.||-.++.+.+-..- .++.. +.|.. ..+..++.+||.|+.++
T Consensus 467 ~~ei~~GrQaY~VcPLIeESE~l~l~~-----------------a~~~~--------~~L~~~~~~~~vgL~HGrm~~~e 521 (677)
T COG1200 467 REEIAKGRQAYVVCPLIEESEKLELQA-----------------AEELY--------EELKSFLPELKVGLVHGRMKPAE 521 (677)
T ss_pred HHHHHcCCEEEEEeccccccccchhhh-----------------HHHHH--------HHHHHHcccceeEEEecCCChHH
Confidence 2 2357889999999887766332100 00110 11222 23567999999999999
Q ss_pred HHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 990 RSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 990 R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
++.|+++|++|+++|||||.+.+.|||+|+.++.|. +++. .+..+++.|-.||+||.+ ..+.|++++.+
T Consensus 522 Kd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI----e~AE-----RFGLaQLHQLRGRVGRG~--~qSyC~Ll~~~ 590 (677)
T COG1200 522 KDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI----ENAE-----RFGLAQLHQLRGRVGRGD--LQSYCVLLYKP 590 (677)
T ss_pred HHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE----echh-----hhhHHHHHHhccccCCCC--cceEEEEEeCC
Confidence 999999999999999999999999999999887543 2221 235899999999999965 89999999987
Q ss_pred Cc
Q 043190 1070 PK 1071 (1492)
Q Consensus 1070 ~~ 1071 (1492)
+.
T Consensus 591 ~~ 592 (677)
T COG1200 591 PL 592 (677)
T ss_pred CC
Confidence 76
No 100
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.94 E-value=4.8e-26 Score=287.33 Aligned_cols=359 Identities=19% Similarity=0.200 Sum_probs=226.0
Q ss_pred CCCHHHHHHHHhhhcC--CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 688 HFNPIQTQIFHILYHT--DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~--~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
.|++.|.++++.+.+. ++++++.||||||||.+|+.++...+.. +.++++++|+++|+.|+++++++.| |.+
T Consensus 144 ~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--g~~vLvLvPt~~L~~Q~~~~l~~~f----g~~ 217 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--GKQALVLVPEIALTPQMLARFRARF----GAP 217 (679)
T ss_pred CCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHh----CCC
Confidence 5999999999999853 5789999999999999999888887764 7899999999999999999988765 678
Q ss_pred EEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC--CCccHHHH-HHHHH
Q 043190 766 MVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA--ERGPILEV-IVSRM 835 (1492)
Q Consensus 766 v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~--~~g~~~~~-i~~~l 835 (1492)
+..++|+.+...+. ....+|+|+|++.+. ..++++++|||||+|..+- ..++.+.. -+..+
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ 288 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVV 288 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcHHHHHHH
Confidence 88999987654321 235799999997542 2367899999999997642 23333311 11122
Q ss_pred HHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCc--cccCcEEEEeccCCccccccccccChhHHHHHhh
Q 043190 836 RYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSV--RPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICT 913 (1492)
Q Consensus 836 ~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~--r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 913 (1492)
+. ...+.++|++|||++ .+.+..-.. ............ ++.| .+.+.+............+...++..+..
T Consensus 289 ra----~~~~~~~il~SATps-~~s~~~~~~-g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~ls~~l~~~i~~ 361 (679)
T PRK05580 289 RA----KLENIPVVLGSATPS-LESLANAQQ-GRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFLSPPLLEAIKQ 361 (679)
T ss_pred Hh----hccCCCEEEEcCCCC-HHHHHHHhc-cceeEEEeccccccCCCC-eEEEEechhhhhhcccCCCCHHHHHHHHH
Confidence 21 134789999999964 343332211 111222222111 1112 22222221100000001133445555544
Q ss_pred c-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcc--------------cC-----------C----------CChHH
Q 043190 914 H-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQ--------------FL-----------G----------MPEED 957 (1492)
Q Consensus 914 ~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~--------------~~-----------~----------~~~~~ 957 (1492)
. ..++++|||+|++..+..+...-|.....+..... ++ . ...+.
T Consensus 362 ~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~ 441 (679)
T PRK05580 362 RLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTER 441 (679)
T ss_pred HHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHH
Confidence 3 45679999999988765555444432211111000 00 0 01111
Q ss_pred HHHHHhhcCcHHHHHH-hccceEeecCCCC--HHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEe--cceeeeC
Q 043190 958 LQMVLSQVTDQNLRQT-LQFGIGLHHAGLN--DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIK--GTEYYDG 1032 (1492)
Q Consensus 958 ~~~~~~~~~~~~l~~~-~~~~v~~~h~~l~--~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~--~~~~~~~ 1032 (1492)
+. +.+... .+.++...|+++. .++++.+++.|++|+.+|||+|+++++|+|+|++++|+. .....+.
T Consensus 442 ~~--------e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~ 513 (679)
T PRK05580 442 LE--------EELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFS 513 (679)
T ss_pred HH--------HHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccC
Confidence 11 223333 3568899999986 467899999999999999999999999999999997752 1111111
Q ss_pred ccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHh
Q 043190 1033 KTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1033 ~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~ 1078 (1492)
+.-+..+-....|.|++|||||.+ ..|.+++.+..++...++.+
T Consensus 514 pdfra~Er~~~~l~q~~GRagR~~--~~g~viiqT~~p~~~~~~~~ 557 (679)
T PRK05580 514 PDFRASERTFQLLTQVAGRAGRAE--KPGEVLIQTYHPEHPVIQAL 557 (679)
T ss_pred CccchHHHHHHHHHHHHhhccCCC--CCCEEEEEeCCCCCHHHHHH
Confidence 110001112578999999999976 89999999987765554443
No 101
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.6e-25 Score=271.05 Aligned_cols=323 Identities=18% Similarity=0.185 Sum_probs=209.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. |+|+|..+++.++ .|+ |..+.||+|||++|.+|++..... +..+++++||++||.|.++.+...+. .+|+
T Consensus 101 g~~-p~~VQ~~~~~~ll-~G~--Iae~~TGeGKTla~~lp~~~~al~--G~~v~VvTptreLA~qdae~~~~l~~-~lGl 173 (656)
T PRK12898 101 GQR-HFDVQLMGGLALL-SGR--LAEMQTGEGKTLTATLPAGTAALA--GLPVHVITVNDYLAERDAELMRPLYE-ALGL 173 (656)
T ss_pred CCC-CChHHHHHHHHHh-CCC--eeeeeCCCCcHHHHHHHHHHHhhc--CCeEEEEcCcHHHHHHHHHHHHHHHh-hcCC
Confidence 665 8899999999998 565 999999999999999999987654 78999999999999999998887554 5599
Q ss_pred EEEEEcCCCCcchh-ccCCCcEEEECchhh-hHhhhccc-----------------------CccccCcccEEEEecccc
Q 043190 765 EMVEMTGDYTPDLM-ALLSADIIISTPEKW-DGISRNWH-----------------------SRNYVKKVGLMILDEIHL 819 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l-~~l~~~~~-----------------------~~~~l~~i~liViDEaH~ 819 (1492)
+|+.+.|+.+.+.+ ...+++|+++|...| -+.+|... .....+.+.+.||||+|.
T Consensus 174 sv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDS 253 (656)
T PRK12898 174 TVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADS 253 (656)
T ss_pred EEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeecccc
Confidence 99999998765433 335789999999886 22232211 112345678999999994
Q ss_pred c--CCCC----------cc----HHHHHHHHHHHhhhc--c--CC-----------------------------------
Q 043190 820 L--GAER----------GP----ILEVIVSRMRYISSQ--T--ER----------------------------------- 844 (1492)
Q Consensus 820 l--~~~~----------g~----~~~~i~~~l~~~~~~--~--~~----------------------------------- 844 (1492)
+ ++.+ .. .+..+....+.+... . ..
T Consensus 254 iLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~~~~~ 333 (656)
T PRK12898 254 VLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVRREEL 333 (656)
T ss_pred eeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchHHHHH
Confidence 3 1111 11 111111111110000 0 00
Q ss_pred --------------------------------------------------------------------------ceEEEE
Q 043190 845 --------------------------------------------------------------------------AVRFIG 850 (1492)
Q Consensus 845 --------------------------------------------------------------------------~~~ii~ 850 (1492)
-.++.|
T Consensus 334 i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~G 413 (656)
T PRK12898 334 VRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAG 413 (656)
T ss_pred HHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhc
Confidence 023566
Q ss_pred EcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhh-cCCCCCeeEEecChH
Q 043190 851 LSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICT-HSPTKPVLIFVSSRR 928 (1492)
Q Consensus 851 lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LIF~~s~~ 928 (1492)
||||.+. .+++.++++.+...+ +..+|..-. ..+...+... ......+...+.. ...++++||||+|++
T Consensus 414 mTGTa~~~~~El~~~y~l~vv~I----Pt~kp~~r~----~~~~~v~~t~-~~K~~aL~~~i~~~~~~~~pvLIft~t~~ 484 (656)
T PRK12898 414 MTGTAREVAGELWSVYGLPVVRI----PTNRPSQRR----HLPDEVFLTA-AAKWAAVAARVRELHAQGRPVLVGTRSVA 484 (656)
T ss_pred ccCcChHHHHHHHHHHCCCeEEe----CCCCCccce----ecCCEEEeCH-HHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 6777654 334555555543211 111111100 0010111111 1111122233322 234678999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEec
Q 043190 929 QTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCT 1008 (1492)
Q Consensus 929 ~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT 1008 (1492)
.++.++..|.+ .++.+..+||.++..++..+. |+.+..+|+|||
T Consensus 485 ~se~L~~~L~~----------------------------------~gi~~~~Lhg~~~~rE~~ii~--~ag~~g~VlVAT 528 (656)
T PRK12898 485 ASERLSALLRE----------------------------------AGLPHQVLNAKQDAEEAAIVA--RAGQRGRITVAT 528 (656)
T ss_pred HHHHHHHHHHH----------------------------------CCCCEEEeeCCcHHHHHHHHH--HcCCCCcEEEEc
Confidence 99999988843 267788999997655555544 444555799999
Q ss_pred cccccccCCC---CcE-----EEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1009 STLAWGVNLP---AHL-----VIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1009 ~~l~~Gvdip---~~~-----~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
++++||+||+ ++. +||+ |+ .+-+...|.||+||+||.| ++|.++.+++..+
T Consensus 529 dmAgRGtDI~l~~~V~~~GGLhVI~----~d------~P~s~r~y~hr~GRTGRqG--~~G~s~~~is~eD 587 (656)
T PRK12898 529 NMAGRGTDIKLEPGVAARGGLHVIL----TE------RHDSARIDRQLAGRCGRQG--DPGSYEAILSLED 587 (656)
T ss_pred cchhcccCcCCccchhhcCCCEEEE----cC------CCCCHHHHHHhcccccCCC--CCeEEEEEechhH
Confidence 9999999999 665 8887 33 2224778999999999988 8999999988754
No 102
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.94 E-value=6.9e-26 Score=267.63 Aligned_cols=362 Identities=26% Similarity=0.424 Sum_probs=243.2
Q ss_pred CCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE
Q 043190 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE 768 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~ 768 (1492)
|..+|.+.+..+ ..++..+|+|||.+|||.+-..+|-..++....+-+||++|+++|++|....+..+|....-.+...
T Consensus 512 Pd~WQ~elLDsv-Dr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~s 590 (1330)
T KOG0949|consen 512 PDEWQRELLDSV-DRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVS 590 (1330)
T ss_pred CcHHHHHHhhhh-hcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccccchh
Confidence 788999998887 4788999999999999999999999999888889999999999999999998888874332223333
Q ss_pred EcCCCCcchhc-cCCCcEEEECchhhhHhhhc-ccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccCCc
Q 043190 769 MTGDYTPDLMA-LLSADIIISTPEKWDGISRN-WHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERA 845 (1492)
Q Consensus 769 ~~g~~~~~~~~-~~~~~Iiv~Tpe~l~~l~~~-~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~~~ 845 (1492)
+-|+++.+-+. .-+++|+|+-||.+..++-. .....+..+++++|+||+|.+|. +.|..++.++-.+ +
T Consensus 591 l~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li---------~ 661 (1330)
T KOG0949|consen 591 LLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI---------P 661 (1330)
T ss_pred hHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc---------C
Confidence 44555443322 23789999999999888776 23456789999999999999986 5666677665433 6
Q ss_pred eEEEEEcCCCCChHHHHHHhcC-C-----cceeEecCCC--------------ccccCcE--------------------
Q 043190 846 VRFIGLSTALANAGDLADWLGV-G-----EIGLFNFKPS--------------VRPVPLE-------------------- 885 (1492)
Q Consensus 846 ~~ii~lSATl~~~~~~~~~l~~-~-----~~~~~~~~~~--------------~r~~~l~-------------------- 885 (1492)
..++++|||+.|+..+..|++. . +.....+... ....++.
T Consensus 662 CP~L~LSATigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~n~~~e~n~~yl~~~falgerai~~~~~~~~~s 741 (1330)
T KOG0949|consen 662 CPFLVLSATIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVYNRMNEGNAYYLLKLFALGERAIIVSLRELSES 741 (1330)
T ss_pred CCeeEEecccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceeeccCCCCcchHHHHHHhhchhhccchhhccccC
Confidence 7899999999999999999971 1 1111111110 0000000
Q ss_pred ---EEEeccC-------------------Cccccccccc-----------------c--C---------------hh---
Q 043190 886 ---VHIQGYP-------------------GKFYCPRMNS-----------------M--N---------------KP--- 906 (1492)
Q Consensus 886 ---~~~~~~~-------------------~~~~~~~~~~-----------------~--~---------------~~--- 906 (1492)
.....+. ..++...... + + +.
T Consensus 742 ~dd~~~lafe~~~~l~~~k~~kl~~k~~p~~~fe~~~~~~k~~~e~~r~~~~l~~~f~e~s~~q~kik~~~ki~~k~Vnk 821 (1330)
T KOG0949|consen 742 EDDNVVLAFEPLSCLTLRKLNKLLIKITPENFFESNIVTKKEVGEYGRHLLELFQGFIEDSLTQKQIKYVYKLQTKEVNK 821 (1330)
T ss_pred CCCceEeeccchhHHHHHHHHHHHhhcCHHHhhhhhhheechHHHHHHHHHHHHHHhhhcChHHHHHHHHHHhhhhhhhh
Confidence 0000000 0000000000 0 0 00
Q ss_pred ----------------HHHHH--hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCC--c------------------
Q 043190 907 ----------------AYAAI--CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETP--R------------------ 948 (1492)
Q Consensus 907 ----------------~~~~l--~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~--~------------------ 948 (1492)
+...+ ......-|.|+|-..|..|+.+|..+.+.+...+.. .
T Consensus 822 qle~~~~ys~e~i~~nil~ll~dLkEK~~lpaicfn~dr~fcekla~kv~~~Le~~e~Ee~k~k~m~k~kk~~~~a~~r~ 901 (1330)
T KOG0949|consen 822 QLESVVDYSSEYILENILDLLMDLKEKNMLPAICFNTDRDFCEKLALKVHRQLESMEMEEKKDKLMEKMKKEAKRARDRE 901 (1330)
T ss_pred HhhhcccCcHHHHHHHHHHHHHHHHhccccchhcccchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 00000 011234588999999988888775543321110000 0
Q ss_pred -------------------------c---cC----CCChHHHHHHHhhc--CcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 949 -------------------------Q---FL----GMPEEDLQMVLSQV--TDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 949 -------------------------~---~~----~~~~~~~~~~~~~~--~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
. |. ..+..+....-+.. .+..+...+-.|+++||+||+...|..|+
T Consensus 902 Kt~e~~~k~~~~~ek~~~~k~d~~~~~~~f~dp~~~~~~~~f~~~~~~~g~~~~~~id~lyRGiG~HHaglNr~yR~~VE 981 (1330)
T KOG0949|consen 902 KTKESWIKESIAAEKSFQMKNDKKNIKYTFLDPLTKLTDYEFEEETKFIGNTDFEFIDMLYRGIGVHHAGLNRKYRSLVE 981 (1330)
T ss_pred HHHHHHhhhhhhhhhhhccccccccceEEecCcccccchhhhhhhccccCCCcHHHHHHHHhcccccccccchHHHHHHH
Confidence 0 00 00001111111111 23456677788999999999999999999
Q ss_pred HHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
-.|+.|...||+||.+++-|||.|..+||+-|.. ..+.+..|.||+|||||.|||..|.++.+--+
T Consensus 982 vLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs---------LQL~plny~QmaGRAGRRGFD~lGnV~FmgiP 1047 (1330)
T KOG0949|consen 982 VLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS---------LQLDPLNYKQMAGRAGRRGFDTLGNVVFMGIP 1047 (1330)
T ss_pred HHhhcCceEEEEEeeehhcccCCCceeEEEeccc---------cccCchhHHhhhccccccccccccceEEEeCc
Confidence 9999999999999999999999999999987542 45678899999999999999999998877544
No 103
>PRK09694 helicase Cas3; Provisional
Probab=99.94 E-value=2.9e-25 Score=280.50 Aligned_cols=322 Identities=20% Similarity=0.225 Sum_probs=200.5
Q ss_pred hcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc
Q 043190 683 LYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762 (1492)
Q Consensus 683 ~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~ 762 (1492)
+|+...|+|+|..+..... ++..++|.||||+|||.+++.++...+......+++|..||+++++++++++.+.+....
T Consensus 281 ~~~~~~p~p~Q~~~~~~~~-~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f 359 (878)
T PRK09694 281 LDNGYQPRQLQTLVDALPL-QPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLF 359 (878)
T ss_pred ccCCCCChHHHHHHHhhcc-CCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhc
Confidence 3444579999998754432 567899999999999999988887766555567999999999999999999887554432
Q ss_pred -CCEEEEEcCCCCcch-----------------------hcc-------CCCcEEEECchhhh-HhhhcccCccccCc--
Q 043190 763 -GKEMVEMTGDYTPDL-----------------------MAL-------LSADIIISTPEKWD-GISRNWHSRNYVKK-- 808 (1492)
Q Consensus 763 -g~~v~~~~g~~~~~~-----------------------~~~-------~~~~Iiv~Tpe~l~-~l~~~~~~~~~l~~-- 808 (1492)
..++...+|....+. ... .-++|+|||+.++. ..+.... .+++.
T Consensus 360 ~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh--~~lR~~~ 437 (878)
T PRK09694 360 PSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH--RFIRGFG 437 (878)
T ss_pred CCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch--HHHHHHh
Confidence 245777777432110 000 12699999999864 3333211 12222
Q ss_pred --ccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcce-------eEecCC
Q 043190 809 --VGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIG-------LFNFKP 877 (1492)
Q Consensus 809 --i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~-------~~~~~~ 877 (1492)
-++|||||+|.+.......++.++..+.. ...++|+||||+|.. +.+.+-++..... ......
T Consensus 438 La~svvIiDEVHAyD~ym~~lL~~~L~~l~~------~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~ 511 (878)
T PRK09694 438 LGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQ------AGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRG 511 (878)
T ss_pred hccCeEEEechhhCCHHHHHHHHHHHHHHHh------cCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccc
Confidence 35899999998854333344444444322 256799999999862 2333322221000 000000
Q ss_pred C--ccccCcEEEEeccCCcccc--ccc--cc-cC-hhHHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCc
Q 043190 878 S--VRPVPLEVHIQGYPGKFYC--PRM--NS-MN-KPAYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPR 948 (1492)
Q Consensus 878 ~--~r~~~l~~~~~~~~~~~~~--~~~--~~-~~-~~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~ 948 (1492)
. ....++...-...+..... ... .. .. ..+...+.. ...++++||||||++.|+.+++.|.+...
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~------ 585 (878)
T PRK09694 512 VNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNN------ 585 (878)
T ss_pred cccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCC------
Confidence 0 0000000000000000000 000 00 01 122333332 35678999999999999999988854211
Q ss_pred ccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHH----HHHHHH-hcCC---ceEEEeccccccccCCCCc
Q 043190 949 QFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRS----LVEELF-ANNK---IQVLVCTSTLAWGVNLPAH 1020 (1492)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~----~v~~~f-~~g~---~~vLvaT~~l~~Gvdip~~ 1020 (1492)
....+..+||+++..+|. .+++.| ++|+ .+|||||+++++|+|++ .
T Consensus 586 -------------------------~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~ 639 (878)
T PRK09694 586 -------------------------TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-F 639 (878)
T ss_pred -------------------------CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-C
Confidence 024589999999999994 566677 6666 47999999999999996 5
Q ss_pred EEEEecceeeeCccCccccCCHHHHHHhhcccCCCCC
Q 043190 1021 LVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQY 1057 (1492)
Q Consensus 1021 ~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~ 1057 (1492)
+++|. ...|++.++||+||+||.+.
T Consensus 640 DvlIt------------dlaPidsLiQRaGR~~R~~~ 664 (878)
T PRK09694 640 DWLIT------------QLCPVDLLFQRLGRLHRHHR 664 (878)
T ss_pred CeEEE------------CCCCHHHHHHHHhccCCCCC
Confidence 67775 34578999999999999874
No 104
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.5e-25 Score=277.26 Aligned_cols=331 Identities=18% Similarity=0.181 Sum_probs=206.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+ .|+++|..+...+. .|+ |..+.||+|||++|.+|++..... +..+.+++|++.||.|.++.+...+ ..+|+
T Consensus 76 g~-~p~~vQl~~~~~l~-~G~--Iaem~TGeGKTL~a~lp~~l~al~--G~~v~VvTpt~~LA~qd~e~~~~l~-~~lGl 148 (790)
T PRK09200 76 GM-RPYDVQLIGALVLH-EGN--IAEMQTGEGKTLTATMPLYLNALE--GKGVHLITVNDYLAKRDAEEMGQVY-EFLGL 148 (790)
T ss_pred CC-CCchHHHHhHHHHc-CCc--eeeecCCCcchHHHHHHHHHHHHc--CCCeEEEeCCHHHHHHHHHHHHHHH-hhcCC
Confidence 66 58999998888765 554 999999999999999999855443 7899999999999999999888755 44599
Q ss_pred EEEEEcCCCC-cc-hhccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc--CCCCcc---------
Q 043190 765 EMVEMTGDYT-PD-LMALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL--GAERGP--------- 826 (1492)
Q Consensus 765 ~v~~~~g~~~-~~-~~~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l--~~~~g~--------- 826 (1492)
+|+.+.|+.+ .. .+....++|+++||+++ +.+..+.. ....++.+.++|+||||.+ ++.+.|
T Consensus 149 ~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~ 228 (790)
T PRK09200 149 TVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRV 228 (790)
T ss_pred eEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceeeeCCCcc
Confidence 9999999876 33 33445789999999997 32332211 1235678999999999954 222222
Q ss_pred --HHHHHHHH-HHHhhhc----cCCceEEEEEcCC----------CCC---h--HHHHHHhc----------CCcc----
Q 043190 827 --ILEVIVSR-MRYISSQ----TERAVRFIGLSTA----------LAN---A--GDLADWLG----------VGEI---- 870 (1492)
Q Consensus 827 --~~~~i~~~-l~~~~~~----~~~~~~ii~lSAT----------l~~---~--~~~~~~l~----------~~~~---- 870 (1492)
.+-....+ .+.+... .....+.+.++.. +++ . ..+..|+. .+..
T Consensus 229 ~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dYiV~ 308 (790)
T PRK09200 229 QSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDYIVY 308 (790)
T ss_pred ccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcEEEE
Confidence 11111111 1111100 0001122222210 001 0 01111111 0000
Q ss_pred --eeEec-CCCccccC-------------------c------------------EEEEeccC------------------
Q 043190 871 --GLFNF-KPSVRPVP-------------------L------------------EVHIQGYP------------------ 892 (1492)
Q Consensus 871 --~~~~~-~~~~r~~~-------------------l------------------~~~~~~~~------------------ 892 (1492)
.+... ....|..+ + ...+.|+.
T Consensus 309 ~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~v 388 (790)
T PRK09200 309 DGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEV 388 (790)
T ss_pred CCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCcE
Confidence 00000 00000000 0 00001110
Q ss_pred ---------------CccccccccccChhHHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChH
Q 043190 893 ---------------GKFYCPRMNSMNKPAYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEE 956 (1492)
Q Consensus 893 ---------------~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 956 (1492)
...+.... .....+...+.. +..+.|+||||+|++.++.++..|.+
T Consensus 389 ~~IPt~kp~~r~d~~~~i~~~~~-~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~----------------- 450 (790)
T PRK09200 389 VQIPTNRPIIRIDYPDKVFVTLD-EKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDE----------------- 450 (790)
T ss_pred EECCCCCCcccccCCCeEEcCHH-HHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHH-----------------
Confidence 00111100 001112222322 35688999999999999999987743
Q ss_pred HHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCC---CCcE-----EEEecce
Q 043190 957 DLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL---PAHL-----VIIKGTE 1028 (1492)
Q Consensus 957 ~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdi---p~~~-----~VI~~~~ 1028 (1492)
.++.+..+||.+...++..+..+++.| +|+|||++++||+|+ |++. +||+
T Consensus 451 -----------------~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~--- 508 (790)
T PRK09200 451 -----------------AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIG--- 508 (790)
T ss_pred -----------------CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEe---
Confidence 267789999999999999888888777 799999999999999 6887 9997
Q ss_pred eeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1029 YYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
|+ .+-+...|.||+||+||.| .+|.++.+++..+
T Consensus 509 -~d------~p~s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 509 -TE------RMESRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred -cc------CCCCHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 33 2225789999999999988 8999999988654
No 105
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=1.4e-25 Score=293.92 Aligned_cols=304 Identities=16% Similarity=0.107 Sum_probs=195.6
Q ss_pred hhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 681 EALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 681 ~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
+..+|+ .|+++|.++++.++ .|+|++++||||||||..+ +++...+.. ++.+++|++||++||.|+++.+.... .
T Consensus 74 ~~~~G~-~pt~iQ~~~i~~il-~g~dv~i~ApTGsGKT~f~-l~~~~~l~~-~g~~alIL~PTreLa~Qi~~~l~~l~-~ 148 (1176)
T PRK09401 74 KKKTGS-KPWSLQRTWAKRLL-LGESFAIIAPTGVGKTTFG-LVMSLYLAK-KGKKSYIIFPTRLLVEQVVEKLEKFG-E 148 (1176)
T ss_pred HHhcCC-CCcHHHHHHHHHHH-CCCcEEEEcCCCCCHHHHH-HHHHHHHHh-cCCeEEEEeccHHHHHHHHHHHHHHh-h
Confidence 334477 69999999999998 7899999999999999744 444444433 47899999999999999999998854 4
Q ss_pred ccCCEEEEEcCCCCc---chh------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-C-------
Q 043190 761 QLGKEMVEMTGDYTP---DLM------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E------- 823 (1492)
Q Consensus 761 ~~g~~v~~~~g~~~~---~~~------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~------- 823 (1492)
..+..+..+.|.... +.. ....++|+|+||+++...+.. ....+++++|+||||.+.+ .
T Consensus 149 ~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~----l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 149 KVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDE----LPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred hcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHh----ccccccCEEEEEChHHhhhcccchhhHH
Confidence 447777666654321 111 113589999999998766552 1245699999999997753 1
Q ss_pred ----Cc-cHHHHHHHHHHH-------------hhh----ccCCceEEEEEcCCCCCh-HH---HHHHhcCCcceeEecCC
Q 043190 824 ----RG-PILEVIVSRMRY-------------ISS----QTERAVRFIGLSTALANA-GD---LADWLGVGEIGLFNFKP 877 (1492)
Q Consensus 824 ----~g-~~~~~i~~~l~~-------------~~~----~~~~~~~ii~lSATl~~~-~~---~~~~l~~~~~~~~~~~~ 877 (1492)
+. ..++.++..++. +.. ......|++++|||.+.. .. +.+.++.. ...
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~~~------v~~ 298 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLGFE------VGS 298 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccceEE------ecC
Confidence 21 234444433321 111 011267899999998642 11 12222211 111
Q ss_pred Cccc-cCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHH---HHHHHHHHHHHHhcCCCCcccCCC
Q 043190 878 SVRP-VPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQ---TRLTALDLIQFAASDETPRQFLGM 953 (1492)
Q Consensus 878 ~~r~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~---~~~~a~~L~~~~~~~~~~~~~~~~ 953 (1492)
.... -.+...+... ......+...+... +.++||||+++.. ++.++..|..
T Consensus 299 ~~~~~rnI~~~yi~~---------~~k~~~L~~ll~~l--~~~~LIFv~t~~~~~~ae~l~~~L~~-------------- 353 (1176)
T PRK09401 299 PVFYLRNIVDSYIVD---------EDSVEKLVELVKRL--GDGGLIFVPSDKGKEYAEELAEYLED-------------- 353 (1176)
T ss_pred cccccCCceEEEEEc---------ccHHHHHHHHHHhc--CCCEEEEEecccChHHHHHHHHHHHH--------------
Confidence 1000 0111111100 00111122222222 3579999999877 8888877743
Q ss_pred ChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEe----ccccccccCCCC-cEEEEecce
Q 043190 954 PEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVC----TSTLAWGVNLPA-HLVIIKGTE 1028 (1492)
Q Consensus 954 ~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLva----T~~l~~Gvdip~-~~~VI~~~~ 1028 (1492)
.++.+..+||+| + + .++.|++|+++|||| |++++||+|+|+ +++||+
T Consensus 354 --------------------~gi~v~~~hg~l---~-~-~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~--- 405 (1176)
T PRK09401 354 --------------------LGINAELAISGF---E-R-KFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIF--- 405 (1176)
T ss_pred --------------------CCCcEEEEeCcH---H-H-HHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEE---
Confidence 267889999999 2 2 349999999999999 689999999999 899997
Q ss_pred eeeCccCccccCC-HHHHHHhhcccCC
Q 043190 1029 YYDGKTKRYVDFP-ITDILQMMGRAGR 1054 (1492)
Q Consensus 1029 ~~~~~~~~~~~~~-~~~~~Qr~GRagR 1054 (1492)
|+.+..+ +.+. ...+.||+||+-+
T Consensus 406 -y~vP~~~-~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 406 -YGVPKFK-FSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred -eCCCCEE-EeccccccCHHHHHHHHh
Confidence 5544322 1111 3578899999854
No 106
>PRK13766 Hef nuclease; Provisional
Probab=99.94 E-value=2.5e-25 Score=292.00 Aligned_cols=325 Identities=22% Similarity=0.317 Sum_probs=217.5
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV 767 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~ 767 (1492)
+++++|.+++..+++ +|+++++|||+|||+++.+++...+. .+++++||++|+++|+.|+.+.+++.+... +.++.
T Consensus 15 ~~r~yQ~~~~~~~l~--~n~lv~~ptG~GKT~~a~~~i~~~l~-~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~-~~~v~ 90 (773)
T PRK13766 15 EARLYQQLLAATALK--KNTLVVLPTGLGKTAIALLVIAERLH-KKGGKVLILAPTKPLVEQHAEFFRKFLNIP-EEKIV 90 (773)
T ss_pred CccHHHHHHHHHHhc--CCeEEEcCCCccHHHHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-CceEE
Confidence 589999999998873 39999999999999999999888774 357899999999999999999888765332 45788
Q ss_pred EEcCCCCcchh--ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCc
Q 043190 768 EMTGDYTPDLM--ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERA 845 (1492)
Q Consensus 768 ~~~g~~~~~~~--~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~ 845 (1492)
.++|+.....+ ...+++|+|+||+.+...+.. ....+.+++++||||||++.... .+..+..+++. ....
T Consensus 91 ~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--~~~~~~~~~liVvDEaH~~~~~~--~~~~i~~~~~~----~~~~ 162 (773)
T PRK13766 91 VFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--GRISLEDVSLLIFDEAHRAVGNY--AYVYIAERYHE----DAKN 162 (773)
T ss_pred EEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--CCCChhhCcEEEEECCccccccc--cHHHHHHHHHh----cCCC
Confidence 89998765432 234789999999987544432 23347789999999999875432 22333333322 2346
Q ss_pred eEEEEEcCCCCC----hHHHHHHhcCCcceeEe-cCCCccc----cCcEEEEe---------------------------
Q 043190 846 VRFIGLSTALAN----AGDLADWLGVGEIGLFN-FKPSVRP----VPLEVHIQ--------------------------- 889 (1492)
Q Consensus 846 ~~ii~lSATl~~----~~~~~~~l~~~~~~~~~-~~~~~r~----~~l~~~~~--------------------------- 889 (1492)
+++++||||+.. ...+...++.....+.. +.+...+ ........
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 789999999854 23344444433221110 0000000 00000000
Q ss_pred ccC--Cc-----------------------c--------------------------------cccccc--c--------
Q 043190 890 GYP--GK-----------------------F--------------------------------YCPRMN--S-------- 902 (1492)
Q Consensus 890 ~~~--~~-----------------------~--------------------------------~~~~~~--~-------- 902 (1492)
+.. .. . +..... .
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 000 00 0 000000 0
Q ss_pred ---------------------cChh----HHHHH---hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCC
Q 043190 903 ---------------------MNKP----AYAAI---CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP 954 (1492)
Q Consensus 903 ---------------------~~~~----~~~~l---~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~ 954 (1492)
...+ +...+ ....+++++||||++++.|..++..|...
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~-------------- 388 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKE-------------- 388 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhC--------------
Confidence 0000 00011 11146788999999999999988877321
Q ss_pred hHHHHHHHhhcCcHHHHHHhccceEeec--------CCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEec
Q 043190 955 EEDLQMVLSQVTDQNLRQTLQFGIGLHH--------AGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKG 1026 (1492)
Q Consensus 955 ~~~~~~~~~~~~~~~l~~~~~~~v~~~h--------~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~ 1026 (1492)
+..+..+| +++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 389 --------------------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~- 447 (773)
T PRK13766 389 --------------------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF- 447 (773)
T ss_pred --------------------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE-
Confidence 22333444 4599999999999999999999999999999999999999998
Q ss_pred ceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1027 TEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1027 ~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
|++. .+...|+||+||+||.| .|.+++++....
T Consensus 448 ---yd~~------~s~~r~iQR~GR~gR~~---~~~v~~l~~~~t 480 (773)
T PRK13766 448 ---YEPV------PSEIRSIQRKGRTGRQE---EGRVVVLIAKGT 480 (773)
T ss_pred ---eCCC------CCHHHHHHHhcccCcCC---CCEEEEEEeCCC
Confidence 6643 36789999999999975 588888887654
No 107
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.94 E-value=3.3e-25 Score=271.09 Aligned_cols=321 Identities=17% Similarity=0.225 Sum_probs=195.5
Q ss_pred CCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE
Q 043190 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE 768 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~ 768 (1492)
++|+|.|++..+. -++..++.++||+|||++|.+|++..... +..++|++|+++||.|.++.+.. +...+|++|+.
T Consensus 69 lrpydVQlig~l~-l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--g~~V~VVTpn~yLA~Rdae~m~~-l~~~LGLsv~~ 144 (762)
T TIGR03714 69 MFPYDVQVLGAIV-LHQGNIAEMKTGEGKTLTATMPLYLNALT--GKGAMLVTTNDYLAKRDAEEMGP-VYEWLGLTVSL 144 (762)
T ss_pred CCccHHHHHHHHH-hcCCceeEecCCcchHHHHHHHHHHHhhc--CCceEEeCCCHHHHHHHHHHHHH-HHhhcCCcEEE
Confidence 4566666665543 22336999999999999999998766554 66799999999999999988766 44556999988
Q ss_pred EcCCC-----Ccc-hhccCCCcEEEECchhh-hHhhhcc----cCccccCcccEEEEecccccC--CCCcc---------
Q 043190 769 MTGDY-----TPD-LMALLSADIIISTPEKW-DGISRNW----HSRNYVKKVGLMILDEIHLLG--AERGP--------- 826 (1492)
Q Consensus 769 ~~g~~-----~~~-~~~~~~~~Iiv~Tpe~l-~~l~~~~----~~~~~l~~i~liViDEaH~l~--~~~g~--------- 826 (1492)
..++. ..+ .+...+++|+++||+++ .+.++.. .....++.+.++|+||||.+. +.+.|
T Consensus 145 ~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~ 224 (762)
T TIGR03714 145 GVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRV 224 (762)
T ss_pred EECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCcc
Confidence 76642 211 22335789999999998 3334321 122346789999999999651 12211
Q ss_pred ---HHHHHHHHHHHhhhc----cCCceEEEEE------------------------------------------------
Q 043190 827 ---ILEVIVSRMRYISSQ----TERAVRFIGL------------------------------------------------ 851 (1492)
Q Consensus 827 ---~~~~i~~~l~~~~~~----~~~~~~ii~l------------------------------------------------ 851 (1492)
.+..+....+.+... .....+-+.+
T Consensus 225 ~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~ 304 (762)
T TIGR03714 225 QSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVT 304 (762)
T ss_pred chHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 111111111111100 0001112222
Q ss_pred -------------------------------------------------------------cCCCCC-hHHHHHHhcCCc
Q 043190 852 -------------------------------------------------------------STALAN-AGDLADWLGVGE 869 (1492)
Q Consensus 852 -------------------------------------------------------------SATl~~-~~~~~~~l~~~~ 869 (1492)
|+|... .+++.+..+..
T Consensus 305 ~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~- 383 (762)
T TIGR03714 305 NGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLS- 383 (762)
T ss_pred CCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCC-
Confidence 222110 00011100000
Q ss_pred ceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHh-hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCc
Q 043190 870 IGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAIC-THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPR 948 (1492)
Q Consensus 870 ~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~ 948 (1492)
++. -|+.+|.. ....+...+...... ...+...+. .+..+.|+||||+|+..++.++..|.+
T Consensus 384 --v~~-IPt~kp~~----r~d~~d~i~~~~~~K-~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~--------- 446 (762)
T TIGR03714 384 --VVK-IPTNKPII----RIDYPDKIYATLPEK-LMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLR--------- 446 (762)
T ss_pred --EEE-cCCCCCee----eeeCCCeEEECHHHH-HHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHH---------
Confidence 000 00111100 000111111111000 111222222 235678999999999999998887743
Q ss_pred ccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCC---------C
Q 043190 949 QFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP---------A 1019 (1492)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip---------~ 1019 (1492)
.+..+..+||.+++.+|..+.++++.| +|+|||++++||+|+| +
T Consensus 447 -------------------------~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GG 499 (762)
T TIGR03714 447 -------------------------EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGG 499 (762)
T ss_pred -------------------------CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCC
Confidence 256788999999999998888888777 7999999999999999 8
Q ss_pred cEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1020 HLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1020 ~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+.+|+. |+.+. ...+ .||+||+||.| ++|.++.+++..+
T Consensus 500 L~vIit----~~~ps------~rid-~qr~GRtGRqG--~~G~s~~~is~eD 538 (762)
T TIGR03714 500 LAVIGT----ERMEN------SRVD-LQLRGRSGRQG--DPGSSQFFVSLED 538 (762)
T ss_pred eEEEEe----cCCCC------cHHH-HHhhhcccCCC--CceeEEEEEccch
Confidence 899987 44332 1334 99999999988 9999999988755
No 108
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.2e-24 Score=264.75 Aligned_cols=336 Identities=19% Similarity=0.191 Sum_probs=205.3
Q ss_pred EEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh-------cc
Q 043190 708 LLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM-------AL 780 (1492)
Q Consensus 708 li~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~-------~~ 780 (1492)
++.||||||||.+|+.++...+.. +++++|++|+++|+.|+++++++.| |.++..++|+.+...+ ..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--GKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHc
Confidence 478999999999998777666654 7899999999999999999988766 6678889988765432 12
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC--CCCccHHHH-HHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG--AERGPILEV-IVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~--~~~g~~~~~-i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
..++|+|+|+..+. ..++++++|||||+|... ...++.+.. -+..++. ...+.++|++|||+ .
T Consensus 75 g~~~IVVGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra----~~~~~~vil~SATP-s 140 (505)
T TIGR00595 75 GEILVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRA----KKFNCPVVLGSATP-S 140 (505)
T ss_pred CCCCEEECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHH----HhcCCCEEEEeCCC-C
Confidence 35799999997541 237789999999999764 233443321 0122221 12478899999995 5
Q ss_pred hHHHHHHhcCCcceeEecCC--CccccCcEEEEeccCCccccccccccChhHHHHHhhc-CCCCCeeEEecChHHHHHHH
Q 043190 858 AGDLADWLGVGEIGLFNFKP--SVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTH-SPTKPVLIFVSSRRQTRLTA 934 (1492)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~--~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~LIF~~s~~~~~~~a 934 (1492)
.+.+....... ........ ..++.+ .+.+........ .......++..+... ..++++|||+|++..+-.+.
T Consensus 141 les~~~~~~g~-~~~~~l~~r~~~~~~p-~v~vid~~~~~~---~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~ 215 (505)
T TIGR00595 141 LESYHNAKQKA-YRLLVLTRRVSGRKPP-EVKLIDMRKEPR---QSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLL 215 (505)
T ss_pred HHHHHHHhcCC-eEEeechhhhcCCCCC-eEEEEecccccc---cCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeE
Confidence 55544432211 11111111 111111 222222111110 012233445555433 56789999999998754433
Q ss_pred HHHHHHHhcCCCCc-------------------------ccC----------CCChHHHHHHHhhcCcHHHHHH-hccce
Q 043190 935 LDLIQFAASDETPR-------------------------QFL----------GMPEEDLQMVLSQVTDQNLRQT-LQFGI 978 (1492)
Q Consensus 935 ~~L~~~~~~~~~~~-------------------------~~~----------~~~~~~~~~~~~~~~~~~l~~~-~~~~v 978 (1492)
..=|.....+.... ... +...+.+. +.+... .+.++
T Consensus 216 C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~--------e~l~~~fp~~~v 287 (505)
T TIGR00595 216 CRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVE--------EELAKLFPGARI 287 (505)
T ss_pred hhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHH--------HHHHhhCCCCcE
Confidence 22222111111000 000 01112222 223333 25689
Q ss_pred EeecCCCCHHHH--HHHHHHHhcCCceEEEeccccccccCCCCcEEEE--ecceeeeCccCccccCCHHHHHHhhcccCC
Q 043190 979 GLHHAGLNDKDR--SLVEELFANNKIQVLVCTSTLAWGVNLPAHLVII--KGTEYYDGKTKRYVDFPITDILQMMGRAGR 1054 (1492)
Q Consensus 979 ~~~h~~l~~~~R--~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI--~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR 1054 (1492)
..+|++++...+ +.+++.|++|+.+|||+|+++++|+|+|++++|+ +.......+.-+..+.....|.|++|||||
T Consensus 288 ~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR 367 (505)
T TIGR00595 288 ARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGR 367 (505)
T ss_pred EEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCC
Confidence 999999987766 8999999999999999999999999999999764 311111111111111135789999999999
Q ss_pred CCCCCceEEEEEecCCcHHHHHHh
Q 043190 1055 PQYDQHGKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1055 ~g~~~~G~~i~l~~~~~~~~~~~~ 1078 (1492)
.+ ..|.+++.+..++...+..+
T Consensus 368 ~~--~~g~viiqt~~p~~~~~~~~ 389 (505)
T TIGR00595 368 AE--DPGQVIIQTYNPNHPAIQAA 389 (505)
T ss_pred CC--CCCEEEEEeCCCCCHHHHHH
Confidence 76 78999998877765544433
No 109
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.93 E-value=1.1e-24 Score=264.64 Aligned_cols=322 Identities=16% Similarity=0.157 Sum_probs=206.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHH-HHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAML-HLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il-~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
|+. |+++|..+...+. .|+ |..++||+|||++|.+|++ ..+. +..+.+++|++.||.|.++.+...+ ..+|
T Consensus 54 g~~-p~~vQlig~~~l~-~G~--Iaem~TGeGKTLva~lpa~l~aL~---G~~V~VvTpt~~LA~qdae~~~~l~-~~LG 125 (745)
T TIGR00963 54 GMR-PFDVQLIGGIALH-KGK--IAEMKTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAEWMGQVY-RFLG 125 (745)
T ss_pred CCC-ccchHHhhhhhhc-CCc--eeeecCCCccHHHHHHHHHHHHHh---CCCEEEEcCCHHHHHHHHHHHHHHh-ccCC
Confidence 665 7888888877765 444 9999999999999999995 4543 5679999999999999999887754 5559
Q ss_pred CEEEEEcCCCCcchh-ccCCCcEEEECchhh-hHhhhcccC----ccccCcccEEEEecccccC--CCCccHH-------
Q 043190 764 KEMVEMTGDYTPDLM-ALLSADIIISTPEKW-DGISRNWHS----RNYVKKVGLMILDEIHLLG--AERGPIL------- 828 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l-~~l~~~~~~----~~~l~~i~liViDEaH~l~--~~~g~~~------- 828 (1492)
++++.++|+.....+ ....++|+++||++| .++++.... ...++.++++||||+|.+. +.|.+.+
T Consensus 126 Lsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~ 205 (745)
T TIGR00963 126 LSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEK 205 (745)
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCC
Confidence 999999998775433 334689999999998 556665321 2356889999999999653 1121110
Q ss_pred -HHHHHHHHHhhhccC--------CceE----------------------------------------------------
Q 043190 829 -EVIVSRMRYISSQTE--------RAVR---------------------------------------------------- 847 (1492)
Q Consensus 829 -~~i~~~l~~~~~~~~--------~~~~---------------------------------------------------- 847 (1492)
..+......+...+. ...+
T Consensus 206 ~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~ 285 (745)
T TIGR00963 206 STELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVR 285 (745)
T ss_pred chHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 011111111110000 0111
Q ss_pred ---------------------------------------------------------EEEEcCCCCC-hHHHHHHhcCCc
Q 043190 848 ---------------------------------------------------------FIGLSTALAN-AGDLADWLGVGE 869 (1492)
Q Consensus 848 ---------------------------------------------------------ii~lSATl~~-~~~~~~~l~~~~ 869 (1492)
+.|||+|... .+++.+..+.+.
T Consensus 286 d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~v 365 (745)
T TIGR00963 286 DGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEV 365 (745)
T ss_pred CCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCE
Confidence 1222222111 011111111100
Q ss_pred ceeEecCCCccccCcEEEEeccCCccccccccccChhHHHH-HhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCc
Q 043190 870 IGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAA-ICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPR 948 (1492)
Q Consensus 870 ~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~ 948 (1492)
.. -|+.+|.. ....+...+...... ...+... ...+..+.|+||||+|...++.++..|.+.
T Consensus 366 ---v~-IPtnkp~~----R~d~~d~i~~t~~~k-~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~-------- 428 (745)
T TIGR00963 366 ---VV-VPTNRPVI----RKDLSDLVYKTEEEK-WKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKER-------- 428 (745)
T ss_pred ---EE-eCCCCCee----eeeCCCeEEcCHHHH-HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHc--------
Confidence 00 00111100 001111111111111 1112222 233567899999999999999999877442
Q ss_pred ccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCC-------cE
Q 043190 949 QFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPA-------HL 1021 (1492)
Q Consensus 949 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~-------~~ 1021 (1492)
+.....+||+ +.+|+..+..|+.+...|+|||++++||+||+. ..
T Consensus 429 --------------------------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl 480 (745)
T TIGR00963 429 --------------------------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGL 480 (745)
T ss_pred --------------------------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCc
Confidence 5567889998 788999999999999999999999999999998 55
Q ss_pred EEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1022 VIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1022 ~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+||. ++ .+-+...+.|+.||+||.| .+|.+..+++..+
T Consensus 481 ~VI~----t~------~p~s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 481 YVIG----TE------RHESRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred EEEe----cC------CCCcHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 8886 22 2335789999999999998 8999999988765
No 110
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.1e-25 Score=279.57 Aligned_cols=271 Identities=29% Similarity=0.337 Sum_probs=190.5
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEe-------eCCch------hHHHHHhh---
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGI-------SEPNF------AARNELLS--- 67 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~-------~~~~~------~~~~~~~~--- 67 (1492)
.++++|+|+||||+||+++|+.|++.....++.++..++|||||.+++..- .+... ......+.
T Consensus 257 lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~ 336 (1041)
T COG4581 257 LPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFS 336 (1041)
T ss_pred cCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccc
Confidence 578999999999999999999999977677888899999999999877532 11110 00000000
Q ss_pred ----H--H---------------------HHHHHHHHH--hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCC
Q 043190 68 ----E--I---------------------CYKKVVDSL--RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDT 118 (1492)
Q Consensus 68 ----~--~---------------------~~~~~~~~~--~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~ 118 (1492)
+ . -...+...+ .+.-|+++|+.||++|+..|..+...- ......
T Consensus 337 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ld-------l~~~~~ 409 (1041)
T COG4581 337 EKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLD-------LVLTEE 409 (1041)
T ss_pred hhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccc-------cccCCc
Confidence 0 0 001123333 345699999999999999998876321 111111
Q ss_pred c-h-hhHHHHHHHhhc---------CchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcE
Q 043190 119 H-P-QLSLIKKDVMKS---------RNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAH 187 (1492)
Q Consensus 119 ~-~-~~~~~~~~~~~~---------~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~ 187 (1492)
. . -...+.+++... .-..+.++|..|+|+|||||.|..|..||.+|..|.++|++||.|++.|+|+|+.
T Consensus 410 ~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPar 489 (1041)
T COG4581 410 KERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPAR 489 (1041)
T ss_pred HHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCccc
Confidence 1 1 112233222222 2256788999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccceecCCCCC-cccCchhhhhhccCCCCCCccceEEEEeCCccH--HHHHHH-hcCCCccccchhHhHHHHHHH
Q 043190 188 TVVIKGTQLYDPKAGG-WRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL--AYYLRL-LTSQLPIESQFISSLKDNLNA 263 (1492)
Q Consensus 188 ~vVI~~~~~~~~~~~~-~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~--~~~~~~-~~~~~~ies~l~~~l~~~l~~ 263 (1492)
+||+.+...+|+.... .+...|.||.|||||.|.|..|.+|++...... .....+ ...+.+..|++...+...+|-
T Consensus 490 tvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~milnl 569 (1041)
T COG4581 490 TVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILNL 569 (1041)
T ss_pred ceeeeeeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHHHhh
Confidence 9999999999986644 456679999999999999999999999544332 222222 345568888888776666664
Q ss_pred HHHhCcccCHHHHHHHhhhhhh
Q 043190 264 EVALGTVTNVKEACAWLGYTYL 285 (1492)
Q Consensus 264 ei~~~~i~~~~~~~~~~~~t~~ 285 (1492)
. .+...+.+...+..+|.
T Consensus 570 l----~v~~l~~~e~ll~~Sf~ 587 (1041)
T COG4581 570 L----RVEGLQTAEDLLERSFA 587 (1041)
T ss_pred h----hhcccCcHHHHHHhhHH
Confidence 3 23333444445555553
No 111
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.2e-25 Score=227.28 Aligned_cols=303 Identities=19% Similarity=0.247 Sum_probs=204.6
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCC-ceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSD-MKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~-~~~l~i~P~r~La~q~~ 751 (1492)
|++++++++- ||++|..+|.+|+|..+ -|.+++..|..|.|||.+|.++-++.+...++ ..+++++.||+||.|+.
T Consensus 49 lkpellraivdcgfehpsevqhecipqai-lgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~ 127 (387)
T KOG0329|consen 49 LKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQIS 127 (387)
T ss_pred cCHHHHHHHHhccCCCchHhhhhhhhHHh-hcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHH
Confidence 4456777776 99999999999999877 58999999999999999999999998875433 47899999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcc--hhcc-CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPD--LMAL-LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPIL 828 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~--~~~~-~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~ 828 (1492)
+++.+.-....+.++....|+.... ...+ +-++|+|+|||++..+.|+. ...+++++.+|+|||+.+.+.- .
T Consensus 128 ~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k--~l~lk~vkhFvlDEcdkmle~l--D- 202 (387)
T KOG0329|consen 128 KEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNR--SLNLKNVKHFVLDECDKMLEQL--D- 202 (387)
T ss_pred HHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhc--cCchhhcceeehhhHHHHHHHH--H-
Confidence 9887743344578999999987643 2223 25699999999999999974 4458999999999999653210 0
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccc-cChh
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNS-MNKP 906 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~-~~~~ 906 (1492)
....+..+...++...|+..+|||+++ ..-++..+--++..++.-... .+. +.+. ..+|...... .++.
T Consensus 203 --MrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~----KLt--LHGL-qQ~YvkLke~eKNrk 273 (387)
T KOG0329|consen 203 --MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEA----KLT--LHGL-QQYYVKLKENEKNRK 273 (387)
T ss_pred --HHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchh----hhh--hhhH-HHHHHhhhhhhhhhh
Confidence 111223334456788999999999976 333443332222222110000 000 0010 0111111111 1111
Q ss_pred HHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCC
Q 043190 907 AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLN 986 (1492)
Q Consensus 907 ~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 986 (1492)
++ .+.....-.+++||+.|... | +
T Consensus 274 l~-dLLd~LeFNQVvIFvKsv~R-------l------------------------------------------------~ 297 (387)
T KOG0329|consen 274 LN-DLLDVLEFNQVVIFVKSVQR-------L------------------------------------------------S 297 (387)
T ss_pred hh-hhhhhhhhcceeEeeehhhh-------h------------------------------------------------h
Confidence 11 12222334567777655421 0 0
Q ss_pred HHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 987 DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 987 ~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
| ..+ +|||+.+++|+|+..++.|++ ||-+. +..+|+||+|||||-| ..|.++.+
T Consensus 298 ----------f---~kr-~vat~lfgrgmdiervNi~~N----Ydmp~------~~DtYlHrv~rAgrfG--tkglaitf 351 (387)
T KOG0329|consen 298 ----------F---QKR-LVATDLFGRGMDIERVNIVFN----YDMPE------DSDTYLHRVARAGRFG--TKGLAITF 351 (387)
T ss_pred ----------h---hhh-hHHhhhhccccCcccceeeec----cCCCC------CchHHHHHhhhhhccc--cccceeeh
Confidence 2 123 899999999999999999998 44221 3789999999999977 99999999
Q ss_pred ecCCcHHH
Q 043190 1067 VHEPKKSF 1074 (1492)
Q Consensus 1067 ~~~~~~~~ 1074 (1492)
++..+...
T Consensus 352 vs~e~da~ 359 (387)
T KOG0329|consen 352 VSDENDAK 359 (387)
T ss_pred hcchhhHH
Confidence 98766544
No 112
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=3.6e-23 Score=219.49 Aligned_cols=315 Identities=22% Similarity=0.282 Sum_probs=217.3
Q ss_pred CCCHHHHHHHHhhh---cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHILY---HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~---~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
+++|.|+.+-..++ ++.++.+|.|-||+|||......|-..+.+ |+++.+.+|+...|.+.+.++++.|. +.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~--G~~vciASPRvDVclEl~~Rlk~aF~---~~ 171 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ--GGRVCIASPRVDVCLELYPRLKQAFS---NC 171 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhc--CCeEEEecCcccchHHHHHHHHHhhc---cC
Confidence 68999998776654 567899999999999999877777777765 89999999999999999999998885 45
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTER 844 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~ 844 (1492)
.+..++|+..... .++++|+|..++..+ -+.++++||||+|...-...+.+...+..-++ .
T Consensus 172 ~I~~Lyg~S~~~f----r~plvVaTtHQLlrF---------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark------~ 232 (441)
T COG4098 172 DIDLLYGDSDSYF----RAPLVVATTHQLLRF---------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARK------K 232 (441)
T ss_pred CeeeEecCCchhc----cccEEEEehHHHHHH---------HhhccEEEEeccccccccCCHHHHHHHHHhhc------c
Confidence 7888999876543 378999998865432 23678999999997743344456655554432 3
Q ss_pred ceEEEEEcCCCCChHHHHHHhcCCcceeEecCC--CccccCcE--EEEeccCCccccccccccChhHHHHHhhc-CCCCC
Q 043190 845 AVRFIGLSTALANAGDLADWLGVGEIGLFNFKP--SVRPVPLE--VHIQGYPGKFYCPRMNSMNKPAYAAICTH-SPTKP 919 (1492)
Q Consensus 845 ~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~--~~r~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 919 (1492)
..-.|.||||+++ .+.+-+............ ..+|.|+. +.+..+..+ .. ...+...+...+... ..+.|
T Consensus 233 ~g~~IylTATp~k--~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~--l~-r~kl~~kl~~~lekq~~~~~P 307 (441)
T COG4098 233 EGATIYLTATPTK--KLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKK--LQ-RNKLPLKLKRWLEKQRKTGRP 307 (441)
T ss_pred cCceEEEecCChH--HHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHH--hh-hccCCHHHHHHHHHHHhcCCc
Confidence 4557999999864 333222222111121111 12222222 222111110 00 011112233444433 56789
Q ss_pred eeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc
Q 043190 920 VLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN 999 (1492)
Q Consensus 920 ~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 999 (1492)
++||+|+....+.++..|.+... ...++..|+. ..+|.+..++|++
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~--------------------------------~~~i~~Vhs~--d~~R~EkV~~fR~ 353 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLP--------------------------------KETIASVHSE--DQHRKEKVEAFRD 353 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCC--------------------------------ccceeeeecc--CccHHHHHHHHHc
Confidence 99999999999999887744322 2345677775 3678889999999
Q ss_pred CCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 1000 NKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1000 g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
|++++||+|++++|||++|+++|.+.|... .-++.+.++|++||+||.-....|..+.|.....+.
T Consensus 354 G~~~lLiTTTILERGVTfp~vdV~Vlgaeh--------~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~ska 419 (441)
T COG4098 354 GKITLLITTTILERGVTFPNVDVFVLGAEH--------RVFTESALVQIAGRVGRSLERPTGDVLFFHYGKSKA 419 (441)
T ss_pred CceEEEEEeehhhcccccccceEEEecCCc--------ccccHHHHHHHhhhccCCCcCCCCcEEEEeccchHH
Confidence 999999999999999999999998875421 124688999999999997666778877776554443
No 113
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=1.9e-23 Score=259.34 Aligned_cols=317 Identities=19% Similarity=0.278 Sum_probs=242.2
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhc---C--CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYH---T--DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMN 752 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~---~--~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~ 752 (1492)
..+.+-|+|. -||-|..|+..+.. + ..|=+|||.-|-|||.+|+-+++..... ++++.++|||--||+|.++
T Consensus 585 ~~F~~~FPye-ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--GKQVAvLVPTTlLA~QHy~ 661 (1139)
T COG1197 585 EEFEASFPYE-ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--GKQVAVLVPTTLLAQQHYE 661 (1139)
T ss_pred HHHHhcCCCc-CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--CCeEEEEcccHHhHHHHHH
Confidence 4566666776 79999999998762 2 2478999999999999999999998875 7999999999999999999
Q ss_pred HHHHHhhhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCc
Q 043190 753 DWKDRLVSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERG 825 (1492)
Q Consensus 753 ~~~~~~~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g 825 (1492)
.|+++|..+ +++|..+..-.+.... ...+.||+|+|.- ++.+ ...+++++++||||-|+.|-..
T Consensus 662 tFkeRF~~f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~k---dv~FkdLGLlIIDEEqRFGVk~- 732 (1139)
T COG1197 662 TFKERFAGF-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSK---DVKFKDLGLLIIDEEQRFGVKH- 732 (1139)
T ss_pred HHHHHhcCC-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCC---CcEEecCCeEEEechhhcCccH-
Confidence 999999988 8898888664433211 2236799999974 4443 3447899999999999775321
Q ss_pred cHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 826 PILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 826 ~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
-.+++.+ ..++.++-||||+-.-.--....|+.+-.++.. |+....|+...+..++....
T Consensus 733 ------KEkLK~L----r~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~T-PP~~R~pV~T~V~~~d~~~i--------- 792 (1139)
T COG1197 733 ------KEKLKEL----RANVDVLTLSATPIPRTLNMSLSGIRDLSVIAT-PPEDRLPVKTFVSEYDDLLI--------- 792 (1139)
T ss_pred ------HHHHHHH----hccCcEEEeeCCCCcchHHHHHhcchhhhhccC-CCCCCcceEEEEecCChHHH---------
Confidence 2233332 348899999999755444445566666555553 34444666666554322111
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
.-..+.+...+|++-...|..+..+..+..|.+..+ ...|++-||.|
T Consensus 793 -reAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVP--------------------------------EarI~vaHGQM 839 (1139)
T COG1197 793 -REAILRELLRGGQVFYVHNRVESIEKKAERLRELVP--------------------------------EARIAVAHGQM 839 (1139)
T ss_pred -HHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHhCC--------------------------------ceEEEEeecCC
Confidence 112334557789999999999999999998877643 35799999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEe-cceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIK-GTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~-~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
+..+-+.++..|-+|+.+|||||.+.+.|||+|+.+.+|. .. --+..+++.|..||+||.. ..|.||
T Consensus 840 ~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~A----------D~fGLsQLyQLRGRVGRS~--~~AYAY 907 (1139)
T COG1197 840 RERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERA----------DKFGLAQLYQLRGRVGRSN--KQAYAY 907 (1139)
T ss_pred CHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecc----------ccccHHHHHHhccccCCcc--ceEEEE
Confidence 9999999999999999999999999999999999876653 22 1235899999999999965 899999
Q ss_pred EEecCCc
Q 043190 1065 ILVHEPK 1071 (1492)
Q Consensus 1065 ~l~~~~~ 1071 (1492)
.++.+.+
T Consensus 908 fl~p~~k 914 (1139)
T COG1197 908 FLYPPQK 914 (1139)
T ss_pred EeecCcc
Confidence 9998654
No 114
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.92 E-value=1.5e-23 Score=275.30 Aligned_cols=283 Identities=17% Similarity=0.107 Sum_probs=181.3
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
..|+++|.++++.++ .|++++++||||||||. |.+++...+.. .+.+++|++||++||.|+++.+...... .|+.+
T Consensus 77 ~~p~~iQ~~~i~~il-~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-~g~~vLIL~PTreLa~Qi~~~l~~l~~~-~~i~~ 152 (1171)
T TIGR01054 77 SEPWSIQKMWAKRVL-RGDSFAIIAPTGVGKTT-FGLAMSLFLAK-KGKRCYIILPTTLLVIQVAEKISSLAEK-AGVGT 152 (1171)
T ss_pred CCCcHHHHHHHHHHh-CCCeEEEECCCCCCHHH-HHHHHHHHHHh-cCCeEEEEeCHHHHHHHHHHHHHHHHHh-cCCce
Confidence 369999999999998 78999999999999997 55566555443 3789999999999999999999885443 35443
Q ss_pred ---EEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-C-----------C
Q 043190 767 ---VEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E-----------R 824 (1492)
Q Consensus 767 ---~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~-----------~ 824 (1492)
+.++|+.+...+. ..+++|+|+||+++...+.+.. .+++++|+||||.+.+ . +
T Consensus 153 ~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~-----~~~~~iVvDEaD~~L~~~k~vd~il~llGF 227 (1171)
T TIGR01054 153 VNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG-----PKFDFIFVDDVDALLKASKNVDKLLKLLGF 227 (1171)
T ss_pred eeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc-----CCCCEEEEeChHhhhhccccHHHHHHHcCC
Confidence 3577877654321 1248999999998866555411 1899999999998754 1 2
Q ss_pred cc-HHHHHHHHHH---------------HhhhccCCce--EEEEEcCCC-CChHHHHHHhcCCcceeEecCCCcccc-Cc
Q 043190 825 GP-ILEVIVSRMR---------------YISSQTERAV--RFIGLSTAL-ANAGDLADWLGVGEIGLFNFKPSVRPV-PL 884 (1492)
Q Consensus 825 g~-~~~~i~~~l~---------------~~~~~~~~~~--~ii~lSATl-~~~~~~~~~l~~~~~~~~~~~~~~r~~-~l 884 (1492)
.. .++.++..++ ......+... .++++|||. |.... ..++.. ... +......... .+
T Consensus 228 ~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~-~~l~r~-ll~-~~v~~~~~~~r~I 304 (1171)
T TIGR01054 228 SEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKR-AKLFRE-LLG-FEVGGGSDTLRNV 304 (1171)
T ss_pred CHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccH-HHHccc-ccc-eEecCccccccce
Confidence 11 2333322211 1111122233 367789994 43111 111110 000 1111110000 11
Q ss_pred EEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecCh---HHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHH
Q 043190 885 EVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSR---RQTRLTALDLIQFAASDETPRQFLGMPEEDLQMV 961 (1492)
Q Consensus 885 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~---~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1492)
..... .. ......+...+... +.++||||+++ +.|+.++..|.+
T Consensus 305 ~~~~~--------~~-~~~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~L~~---------------------- 351 (1171)
T TIGR01054 305 VDVYV--------ED-EDLKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEFLEN---------------------- 351 (1171)
T ss_pred EEEEE--------ec-ccHHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHHHHh----------------------
Confidence 11110 00 00011122223322 46799999999 888888877733
Q ss_pred HhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEe----ccccccccCCCC-cEEEEecceeeeCcc
Q 043190 962 LSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVC----TSTLAWGVNLPA-HLVIIKGTEYYDGKT 1034 (1492)
Q Consensus 962 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLva----T~~l~~Gvdip~-~~~VI~~~~~~~~~~ 1034 (1492)
.++.+..+||+++. .+++.|++|+++|||| |++++||+|+|+ +++||+ |+.|.
T Consensus 352 ------------~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~----~~~P~ 409 (1171)
T TIGR01054 352 ------------HGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVF----LGVPK 409 (1171)
T ss_pred ------------CCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEE----ECCCC
Confidence 26778999999963 6899999999999999 589999999999 799997 65554
No 115
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.91 E-value=2e-23 Score=273.12 Aligned_cols=267 Identities=17% Similarity=0.215 Sum_probs=172.2
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCc-hh------------HHHHHhhHHHH
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPN-FA------------ARNELLSEICY 71 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~-~~------------~~~~~~~~~~~ 71 (1492)
+++.|+|+||||++|++++++||+...+..++ .....|+.++... +...... .. .....+....+
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~~pv~Iv-~~~~~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGDRPVTVV-NPPAMRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCCCCEEEE-CCCCCcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHH
Confidence 56799999999999999999999865333333 2445677666532 2211100 00 00111122223
Q ss_pred HHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHh---cccEEEE
Q 043190 72 KKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELF---GLAVGVH 148 (1492)
Q Consensus 72 ~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~gv~~h 148 (1492)
..+...+..++++|||||||+.|+.++..|.+...+..... . . .....+......+.....+. ...+.+|
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~-----~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ia~~H 307 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRS-----P-S-IAVDAAHFESTSGATSNRVQSSDVFIARSH 307 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhcccc-----c-c-ccchhhhhhhccccchhccccccceeeeec
Confidence 34455556788999999999999999999987543210000 0 0 00000001000111111111 2347899
Q ss_pred cCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEE
Q 043190 149 HAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGI 228 (1492)
Q Consensus 149 hagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i 228 (1492)
||+|++++|..||+.|++|.+++||||++|++|||+|++++||+ |+. +.+..+|+||+|||||. .+..+.++
T Consensus 308 HGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq----~gs---P~sVas~LQRiGRAGR~-~gg~s~gl 379 (1490)
T PRK09751 308 HGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ----VAT---PLSVASGLQRIGRAGHQ-VGGVSKGL 379 (1490)
T ss_pred cccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE----eCC---CCCHHHHHHHhCCCCCC-CCCccEEE
Confidence 99999999999999999999999999999999999999999996 443 23667899999999997 45567777
Q ss_pred EEeCCcc-HHH----HHHHhcCC-Cccc--cchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhh
Q 043190 229 IITSHDK-LAY----YLRLLTSQ-LPIE--SQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRM 289 (1492)
Q Consensus 229 ~~~~~~~-~~~----~~~~~~~~-~~ie--s~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~ 289 (1492)
++..+.+ ... ...++... +++. ..-...|..|+.+.++.+ -.+.++.++.++.+|.|..+
T Consensus 380 i~p~~r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~-~~~~d~l~~~vrra~pf~~L 447 (1490)
T PRK09751 380 FFPRTRRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMD-ALQVDEWYSRVRRAAPWKDL 447 (1490)
T ss_pred EEeCcHHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcC-CCCHHHHHHHhhccCCcccC
Confidence 6665432 111 22233322 2332 233457899999988865 56689999999999988854
No 116
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.91 E-value=3.3e-23 Score=269.48 Aligned_cols=258 Identities=19% Similarity=0.228 Sum_probs=174.0
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCC----CCceEeecCCc-ccccceEEEEEeeCCch-hHHHHHhhHHHHHHHHHHH
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNP----EMGLFFFDSSY-RPIPLAQQYIGISEPNF-AARNELLSEICYKKVVDSL 78 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~----~~~~~~~~~~~-rpv~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (1492)
+...|+|++|||++|++++++|+.... +..+..+...+ ++.++.. . .+.... ...........+..+.+.+
T Consensus 205 ~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v--~-~p~~~l~~~~~~~~~~~l~~~L~~~i 281 (876)
T PRK13767 205 GGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKV--I-SPVDDLIHTPAEEISEALYETLHELI 281 (876)
T ss_pred CCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEE--e-ccCccccccccchhHHHHHHHHHHHH
Confidence 357899999999999999999997631 22222332222 2222211 1 110000 0001112233445566666
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
.+++++|||||||+.|+.++..|.+..... ....++++|||+|++++|.
T Consensus 282 ~~~~~~LVF~nTr~~ae~la~~L~~~~~~~-------------------------------~~~~~i~~hHg~ls~~~R~ 330 (876)
T PRK13767 282 KEHRTTLIFTNTRSGAERVLYNLRKRFPEE-------------------------------YDEDNIGAHHSSLSREVRL 330 (876)
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHhchhh-------------------------------ccccceeeeeCCCCHHHHH
Confidence 778999999999999999999887643210 1235799999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCC-ccceEEEEeCCccHH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD-RSGEGIIITSHDKLA 237 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d-~~G~~i~~~~~~~~~ 237 (1492)
.+|+.|++|.++|||||++|++|||+|++++||. |+++ .+..+|+||+|||||.+.+ ..|.++.. +..+..
T Consensus 331 ~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~----~~~P---~sv~~ylQRiGRaGR~~g~~~~g~ii~~-~~~~l~ 402 (876)
T PRK13767 331 EVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL----LGSP---KSVSRLLQRIGRAGHRLGEVSKGRIIVV-DRDDLV 402 (876)
T ss_pred HHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE----eCCC---CCHHHHHHhcccCCCCCCCCCcEEEEEc-CchhHH
Confidence 9999999999999999999999999999999996 5533 2567799999999997432 23444443 333422
Q ss_pred H---HHHH-h-cCCCcc--ccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHH
Q 043190 238 Y---YLRL-L-TSQLPI--ESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLS 310 (1492)
Q Consensus 238 ~---~~~~-~-~~~~~i--es~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~ 310 (1492)
. +.+. . ...+++ .......|..|+.+.++.+ ..+.+++++|++.||.|..+..
T Consensus 403 e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~------------------- 462 (876)
T PRK13767 403 ECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIER-PWDIEEAYNIVRRAYPYRDLSD------------------- 462 (876)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHcC-CCCHHHHHHHHhccCCcccCCH-------------------
Confidence 2 1111 1 112232 3333457899999976664 7799999999999999996532
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 043190 311 LKQRALVTDAARALDKAK 328 (1492)
Q Consensus 311 ~~~~~~~~~~l~~L~~~~ 328 (1492)
+.++..++.|...+
T Consensus 463 ----~~~~~~l~~l~~~~ 476 (876)
T PRK13767 463 ----EDFESVLRYLAGDY 476 (876)
T ss_pred ----HHHHHHHHHHhccC
Confidence 34557788887663
No 117
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.91 E-value=2.6e-24 Score=232.79 Aligned_cols=291 Identities=16% Similarity=0.163 Sum_probs=185.8
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhhhcc---CCEEEEEcCCCCcc---hhccCCCcEEEECchhhhHhhhcccCccccCc
Q 043190 735 MKVVYIAPLKAIVRERMNDWKDRLVSQL---GKEMVEMTGDYTPD---LMALLSADIIISTPEKWDGISRNWHSRNYVKK 808 (1492)
Q Consensus 735 ~~~l~i~P~r~La~q~~~~~~~~~~~~~---g~~v~~~~g~~~~~---~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~ 808 (1492)
+.++++-|+|+|++|.++.+.+ |.... .++-..+.|+.... .....+.+|+|+||++++.++.+ ....+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~-Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--g~~~lt~ 363 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEE-FKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--GLVTLTH 363 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHH-HHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--cceeeee
Confidence 4789999999999999997665 33321 12222333432211 22335789999999999988886 3445889
Q ss_pred ccEEEEecccccCC-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHH-------HHhcCCcceeEe----
Q 043190 809 VGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA--GDLA-------DWLGVGEIGLFN---- 874 (1492)
Q Consensus 809 i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~-------~~l~~~~~~~~~---- 874 (1492)
++++|+||++.+.. .....+..+...++++.+ -..+++.+.+|||+... ..++ .|...+......
T Consensus 364 crFlvlDead~lL~qgy~d~I~r~h~qip~~ts-dg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD~vpetvH 442 (725)
T KOG0349|consen 364 CRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTS-DGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGEDLVPETVH 442 (725)
T ss_pred eEEEEecchhhhhhcccHHHHHHHhccchhhhc-CCcccccceeeeEEeEEEeeehhhhhccCceeEecccccccchhhc
Confidence 99999999997643 333344444444555443 23578899999998652 2222 344433221110
Q ss_pred -c----CCC----ccccCcEEEEeccCCccccccc---cccC---------hhHHHHHhhcCCCCCeeEEecChHHHHHH
Q 043190 875 -F----KPS----VRPVPLEVHIQGYPGKFYCPRM---NSMN---------KPAYAAICTHSPTKPVLIFVSSRRQTRLT 933 (1492)
Q Consensus 875 -~----~~~----~r~~~l~~~~~~~~~~~~~~~~---~~~~---------~~~~~~l~~~~~~~~~LIF~~s~~~~~~~ 933 (1492)
+ .+. +....-.+...+...+.+.... ..+. ......+.. ....++||||.|+.+|..+
T Consensus 443 hvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~-h~mdkaiifcrtk~dcDnL 521 (725)
T KOG0349|consen 443 HVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRR-HAMDKAIIFCRTKQDCDNL 521 (725)
T ss_pred cceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhh-hccCceEEEEeccccchHH
Confidence 0 000 0000000000111111100000 0000 011122222 2346899999999999998
Q ss_pred HHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccc
Q 043190 934 ALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAW 1013 (1492)
Q Consensus 934 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~ 1013 (1492)
-+.+.+... ..+.+.++|++..+.+|..-++.|+.+..+.||||+++++
T Consensus 522 er~~~qkgg-------------------------------~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaar 570 (725)
T KOG0349|consen 522 ERMMNQKGG-------------------------------KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAAR 570 (725)
T ss_pred HHHHHHcCC-------------------------------ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhc
Confidence 887765421 2467899999999999999999999999999999999999
Q ss_pred ccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 1014 GVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1014 Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
|+|+.++-++|+-| .+=....|+||+||+||+. +-|.++.++......
T Consensus 571 gldi~g~p~~invt----------lpd~k~nyvhrigrvgrae--rmglaislvat~~ek 618 (725)
T KOG0349|consen 571 GLDITGLPFMINVT----------LPDDKTNYVHRIGRVGRAE--RMGLAISLVATVPEK 618 (725)
T ss_pred cccccCCceEEEEe----------cCcccchhhhhhhccchhh--hcceeEEEeeccchh
Confidence 99999999999833 1113679999999999975 889999988755443
No 118
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.90 E-value=3.8e-22 Score=240.45 Aligned_cols=297 Identities=22% Similarity=0.266 Sum_probs=191.6
Q ss_pred CCCCHHHHHHHHhhhcC---CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 687 SHFNPIQTQIFHILYHT---DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~---~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
..++++|.+++.++.+. ++..++++|||+|||.++...+-.. ..+++|++|+++|+.|..+.+...+.. +
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----~~~~Lvlv~~~~L~~Qw~~~~~~~~~~--~ 107 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----KRSTLVLVPTKELLDQWAEALKKFLLL--N 107 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----cCCEEEEECcHHHHHHHHHHHHHhcCC--c
Confidence 35999999999999854 8899999999999999998777665 445999999999999987766654422 1
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccC
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
..++.+.|+..... ...|.|+|...+.... .......+.+++||+||||++.... +..+...+.
T Consensus 108 ~~~g~~~~~~~~~~----~~~i~vat~qtl~~~~--~l~~~~~~~~~liI~DE~Hh~~a~~---~~~~~~~~~------- 171 (442)
T COG1061 108 DEIGIYGGGEKELE----PAKVTVATVQTLARRQ--LLDEFLGNEFGLIIFDEVHHLPAPS---YRRILELLS------- 171 (442)
T ss_pred cccceecCceeccC----CCcEEEEEhHHHhhhh--hhhhhcccccCEEEEEccccCCcHH---HHHHHHhhh-------
Confidence 23555655433211 1579999998653321 0111223379999999999886432 233333222
Q ss_pred CceE-EEEEcCCCCChH-----HHHHHhcCCcceeEecCC-------CccccCcEEEEeccCCc---cccc---------
Q 043190 844 RAVR-FIGLSTALANAG-----DLADWLGVGEIGLFNFKP-------SVRPVPLEVHIQGYPGK---FYCP--------- 898 (1492)
Q Consensus 844 ~~~~-ii~lSATl~~~~-----~~~~~l~~~~~~~~~~~~-------~~r~~~l~~~~~~~~~~---~~~~--------- 898 (1492)
... ++|||||++..+ ++...+| ..++.... ...|..+.......... .+..
T Consensus 172 -~~~~~LGLTATp~R~D~~~~~~l~~~~g---~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 172 -AAYPRLGLTATPEREDGGRIGDLFDLIG---PIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELL 247 (442)
T ss_pred -cccceeeeccCceeecCCchhHHHHhcC---CeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhh
Confidence 233 899999976432 3444443 11221110 01111111111100000 0000
Q ss_pred -------------cccccChhH---HH-HHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHH
Q 043190 899 -------------RMNSMNKPA---YA-AICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMV 961 (1492)
Q Consensus 899 -------------~~~~~~~~~---~~-~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 961 (1492)
......... .. .+..+..+.+++||+.+..++..++..+...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~--------------------- 306 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAP--------------------- 306 (442)
T ss_pred hhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCC---------------------
Confidence 000000011 11 1112224679999999999999988766221
Q ss_pred HhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC
Q 043190 962 LSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP 1041 (1492)
Q Consensus 962 ~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~ 1041 (1492)
+. +..+.+..+..+|..+++.|+.|.+++||++.++.+|+|+|++.++|.... .+ |
T Consensus 307 -------------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~-----t~-----S 362 (442)
T COG1061 307 -------------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRP-----TG-----S 362 (442)
T ss_pred -------------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCC-----CC-----c
Confidence 12 678899999999999999999999999999999999999999999886321 11 6
Q ss_pred HHHHHHhhcccCCC
Q 043190 1042 ITDILQMMGRAGRP 1055 (1492)
Q Consensus 1042 ~~~~~Qr~GRagR~ 1055 (1492)
...|.||+||.-|+
T Consensus 363 ~~~~~Q~lGR~LR~ 376 (442)
T COG1061 363 RRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHHHhhhhccC
Confidence 88999999999995
No 119
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.89 E-value=4.1e-22 Score=256.02 Aligned_cols=307 Identities=18% Similarity=0.211 Sum_probs=207.0
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH-hcCCcE
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL-RQGHQA 84 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 84 (1492)
++.|+|+||||+ +.+.++++++..+ + +..+.|..|++.+|..............+..+ ...+.+.. ...+++
T Consensus 217 pdlKvILmSATi-d~e~fs~~F~~ap---v--I~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~l-l~~V~~l~~~~~GdI 289 (1294)
T PRK11131 217 PDLKVIITSATI-DPERFSRHFNNAP---I--IEVSGRTYPVEVRYRPIVEEADDTERDQLQAI-FDAVDELGREGPGDI 289 (1294)
T ss_pred CCceEEEeeCCC-CHHHHHHHcCCCC---E--EEEcCccccceEEEeecccccchhhHHHHHHH-HHHHHHHhcCCCCCE
Confidence 468999999999 5789999987542 3 33456677777776654322111111111111 11122111 346789
Q ss_pred EEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHH
Q 043190 85 MVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLF 164 (1492)
Q Consensus 85 lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f 164 (1492)
||||+++++++.+++.|.+.... ...|..+||+|++++|..+++.
T Consensus 290 LVFLpg~~EIe~lae~L~~~~~~----------------------------------~~~VlpLhg~Ls~~eQ~~Vf~~- 334 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLNLR----------------------------------HTEILPLYARLSNSEQNRVFQS- 334 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcCCC----------------------------------cceEeecccCCCHHHHHHHhcc-
Confidence 99999999999999888643100 1126778999999999999886
Q ss_pred hCCCccEEEeccccccccCCCcEEEEEec----cceecCCCCC-------cccCchhhhhhccCCCCCCccceEEEEeCC
Q 043190 165 SEGLLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAGG-------WRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 165 ~~g~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~~-------~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~ 233 (1492)
.|..+|||||+++++|||+|++++||+. ...||+..+. .+..++.||+|||||.+ .|.||.+++.
T Consensus 335 -~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~---~G~c~rLyte 410 (1294)
T PRK11131 335 -HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS---EGICIRLYSE 410 (1294)
T ss_pred -cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC---CcEEEEeCCH
Confidence 5889999999999999999999999984 3558876541 23457999999999984 7999999986
Q ss_pred ccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHH
Q 043190 234 DKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQ 313 (1492)
Q Consensus 234 ~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~ 313 (1492)
++.. ++. ..+...-+..+|...++...++|. .++ .+ |. +...| .
T Consensus 411 ~d~~---~~~--~~~~PEIlR~~L~~viL~lk~lgl-~di---~~-----F~---fldpP--------------~----- 454 (1294)
T PRK11131 411 DDFL---SRP--EFTDPEILRTNLASVILQMTALGL-GDI---AA-----FP---FVEAP--------------D----- 454 (1294)
T ss_pred HHHH---hhh--cccCCccccCCHHHHHHHHHHcCC-CCc---ce-----ee---CCCCC--------------C-----
Confidence 5533 321 223334445566666666555552 111 11 11 11122 1
Q ss_pred HHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhH
Q 043190 314 RALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEE 393 (1492)
Q Consensus 314 ~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e 393 (1492)
.+.|.++++.|.+.|+|+.+..++...+|++|+.||.++++|..++++..+...+ +..+++.+.|... ..+...|+.+
T Consensus 455 ~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~-c~~evl~IaA~Ls-v~dpf~~p~~ 532 (1294)
T PRK11131 455 KRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHG-CVREVMIITSALS-IQDPRERPMD 532 (1294)
T ss_pred HHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcC-CHHHHHHHHHHHc-CCCcccCCch
Confidence 4678899999999999975433345689999999999999999999999876655 4556666655543 2345555555
Q ss_pred HHH
Q 043190 394 QNE 396 (1492)
Q Consensus 394 ~~~ 396 (1492)
+.+
T Consensus 533 ~~~ 535 (1294)
T PRK11131 533 KQQ 535 (1294)
T ss_pred hHH
Confidence 443
No 120
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.88 E-value=1.4e-21 Score=240.52 Aligned_cols=255 Identities=22% Similarity=0.251 Sum_probs=184.8
Q ss_pred cccEEEEcccCCChHHHHHhcCCCC-CCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 7 MIRIVGLSATLPNYLEVAQFLRVNP-EMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 7 ~~riv~lSATl~n~~~~a~~l~~~~-~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
+.|.||||||+.+++++|+||.... +..+..... .++..+ .++ .+...... ........+..+.+.+++.+.+|
T Consensus 183 ~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~-~k~~~i--~v~-~p~~~~~~-~~~~~~~~~~~i~~~v~~~~ttL 257 (814)
T COG1201 183 DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSA-AKKLEI--KVI-SPVEDLIY-DEELWAALYERIAELVKKHRTTL 257 (814)
T ss_pred ccEEEeehhccCCHHHHHHHhcCCCCceEEEEccc-CCcceE--EEE-ecCCcccc-ccchhHHHHHHHHHHHhhcCcEE
Confidence 7999999999999999999998863 223332222 222222 111 11111000 02233445677888888888999
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
||+|||..||.++..|.+... ..++.|||+|+++.|..+|+.|+
T Consensus 258 IF~NTR~~aE~l~~~L~~~~~------------------------------------~~i~~HHgSlSre~R~~vE~~lk 301 (814)
T COG1201 258 IFTNTRSGAERLAFRLKKLGP------------------------------------DIIEVHHGSLSRELRLEVEERLK 301 (814)
T ss_pred EEEeChHHHHHHHHHHHHhcC------------------------------------CceeeecccccHHHHHHHHHHHh
Confidence 999999999999998876521 35999999999999999999999
Q ss_pred CCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc-cHHH----HH
Q 043190 166 EGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD-KLAY----YL 240 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~-~~~~----~~ 240 (1492)
+|.++++|||++|+.|||+.+++.||. |..+ .+....+||+||||+. .+...++++++.+- +.-. ..
T Consensus 302 ~G~lravV~TSSLELGIDiG~vdlVIq----~~SP---~sV~r~lQRiGRsgHr-~~~~Skg~ii~~~r~dllE~~vi~~ 373 (814)
T COG1201 302 EGELKAVVATSSLELGIDIGDIDLVIQ----LGSP---KSVNRFLQRIGRAGHR-LGEVSKGIIIAEDRDDLLECLVLAD 373 (814)
T ss_pred cCCceEEEEccchhhccccCCceEEEE----eCCc---HHHHHHhHhccccccc-cCCcccEEEEecCHHHHHHHHHHHH
Confidence 999999999999999999999999995 4322 2566799999999995 45567888887652 2111 11
Q ss_pred HHhc---CCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHH
Q 043190 241 RLLT---SQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALV 317 (1492)
Q Consensus 241 ~~~~---~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~ 317 (1492)
.... +..++...-...|..|+++.+... ..+.+++++.++++|-|..+. .+-+
T Consensus 374 ~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrraypy~~L~-----------------------~e~f 429 (814)
T COG1201 374 LALEGKLERIKIPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRAYPYADLS-----------------------REDF 429 (814)
T ss_pred HHHhCCcccCCCCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhccccccCC-----------------------HHHH
Confidence 1111 123455555678999999988877 889999999999999998542 2445
Q ss_pred HHHHHHHHH--hccccccc
Q 043190 318 TDAARALDK--AKMMRFDE 334 (1492)
Q Consensus 318 ~~~l~~L~~--~~~i~~~~ 334 (1492)
+..++.|.. .+.+....
T Consensus 430 ~~v~~~l~~~~~~~~~i~~ 448 (814)
T COG1201 430 RLVLRYLAGEKNVYAKIWL 448 (814)
T ss_pred HHHHHHHhhcccceeEEee
Confidence 678888888 66665443
No 121
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.88 E-value=7.7e-22 Score=250.22 Aligned_cols=286 Identities=15% Similarity=0.185 Sum_probs=194.8
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh-cCC
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR-QGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 82 (1492)
.+++.|+|+||||+++ +.+++|++..+ .+....|..|++++|......... .......+...+. .++
T Consensus 143 lr~dlqlIlmSATl~~-~~l~~~l~~~~-----vI~~~gr~~pVe~~y~~~~~~~~~------~~~v~~~l~~~l~~~~g 210 (819)
T TIGR01970 143 LREDLKILAMSATLDG-ERLSSLLPDAP-----VVESEGRSFPVEIRYLPLRGDQRL------EDAVSRAVEHALASETG 210 (819)
T ss_pred cCCCceEEEEeCCCCH-HHHHHHcCCCc-----EEEecCcceeeeeEEeecchhhhH------HHHHHHHHHHHHHhcCC
Confidence 3568999999999975 45888886431 344567778888777654322110 0111112222222 367
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||+++++++.+++.|.+.... ...+..+||+|++++|..+++
T Consensus 211 ~iLVFlpg~~eI~~l~~~L~~~~~~----------------------------------~~~v~pLHg~L~~~eq~~~~~ 256 (819)
T TIGR01970 211 SILVFLPGQAEIRRVQEQLAERLDS----------------------------------DVLICPLYGELSLAAQDRAIK 256 (819)
T ss_pred cEEEEECCHHHHHHHHHHHHhhcCC----------------------------------CcEEEEecCCCCHHHHHHHHh
Confidence 8999999999999999888653210 123788999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEecc----ceecCCCCC-------cccCchhhhhhccCCCCCCccceEEEEe
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGT----QLYDPKAGG-------WRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~----~~~~~~~~~-------~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
.|++|..+|||||+++++|||+|++++||+.. ..||+..+- .+..++.||+|||||. ..|.||.++
T Consensus 257 ~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~ 333 (819)
T TIGR01970 257 PDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLW 333 (819)
T ss_pred hcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeC
Confidence 99999999999999999999999999999953 347776542 3455789999999998 479999999
Q ss_pred CCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHH
Q 043190 232 SHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSL 311 (1492)
Q Consensus 232 ~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~ 311 (1492)
+.++...+. ... ...-+...|...++...+.|. .+..+ +.| ...|
T Consensus 334 t~~~~~~l~---~~~--~PEI~r~~L~~~~L~l~~~g~-~~~~~-~~~----------l~~P------------------ 378 (819)
T TIGR01970 334 SEEQHQRLP---AQD--EPEILQADLSGLALELAQWGA-KDPSD-LRW----------LDAP------------------ 378 (819)
T ss_pred CHHHHHhhh---cCC--CcceeccCcHHHHHHHHHcCC-CChhh-CCC----------CCCc------------------
Confidence 865543322 222 222233345555554444442 22111 111 1222
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcC
Q 043190 312 KQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSH 380 (1492)
Q Consensus 312 ~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~ 380 (1492)
..+.+..|++.|...|+|+.+ + .+|++|+.||.++++|.-++++......+ +...++.+.+.
T Consensus 379 -~~~~i~~a~~~L~~lgald~~---~--~lT~~G~~~~~lp~~p~l~~~ll~~~~~~-~~~~~~~iaa~ 440 (819)
T TIGR01970 379 -PSVALAAARQLLQRLGALDAQ---G--RLTAHGKAMAALGCHPRLAAMLLSAHSTG-LAALACDLAAL 440 (819)
T ss_pred -CHHHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCCHHHHHHHHHhhhcC-CHHHHHHHHHH
Confidence 135688999999999999633 3 58999999999999999999999865444 33344444443
No 122
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=3.1e-21 Score=237.66 Aligned_cols=129 Identities=17% Similarity=0.140 Sum_probs=96.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|.. ++++|...--.+. .| -|..++||+|||++|.+|++..... +..+.+++|++.||.|.++.+.. +...+|+
T Consensus 80 g~~-~ydvQliGg~~Lh-~G--~Iaem~TGeGKTL~a~Lpa~~~al~--G~~V~VvTpn~yLA~qd~e~m~~-l~~~lGL 152 (896)
T PRK13104 80 GLR-HFDVQLIGGMVLH-EG--NIAEMRTGEGKTLVATLPAYLNAIS--GRGVHIVTVNDYLAKRDSQWMKP-IYEFLGL 152 (896)
T ss_pred CCC-cchHHHhhhhhhc-cC--ccccccCCCCchHHHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHHHHHH-HhcccCc
Confidence 544 6666655444432 33 3889999999999999999976654 56799999999999999988877 4455699
Q ss_pred EEEEEcCCCCcchh-ccCCCcEEEECchhh-hHhhhcccC----ccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDLM-ALLSADIIISTPEKW-DGISRNWHS----RNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l-~~l~~~~~~----~~~l~~i~liViDEaH~l 820 (1492)
+|++++|+.....+ ....++|+++||++| .++++.... ....+.+.++||||||.+
T Consensus 153 tv~~i~gg~~~~~r~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsi 214 (896)
T PRK13104 153 TVGVIYPDMSHKEKQEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSI 214 (896)
T ss_pred eEEEEeCCCCHHHHHHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhh
Confidence 99999998765433 233789999999997 556665321 112368999999999954
No 123
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.87 E-value=3.5e-21 Score=245.31 Aligned_cols=194 Identities=20% Similarity=0.146 Sum_probs=137.4
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCC---ch---hHHHHHhhHHHHHHHHHH
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEP---NF---AARNELLSEICYKKVVDS 77 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~ 77 (1492)
.+++.|+|++|||++|+.++++++... + +..++.+..|.+.....+..+.. .. ..............+...
T Consensus 191 ~g~~~q~i~~SATi~n~~~~~~~l~g~-~--~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l 267 (742)
T TIGR03817 191 YGASPVFVLASATTADPAAAASRLIGA-P--VVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADL 267 (742)
T ss_pred cCCCCEEEEEecCCCCHHHHHHHHcCC-C--eEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHH
Confidence 356789999999999999999888664 2 34455555555433333222110 00 000000000112234444
Q ss_pred HhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 78 LRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 78 ~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
+..+.++||||+||+.|+.+++.+.+...... .-+..++..|||||++++|
T Consensus 268 ~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~-----------------------------~~l~~~v~~~hgg~~~~eR 318 (742)
T TIGR03817 268 VAEGARTLTFVRSRRGAELVAAIARRLLGEVD-----------------------------PDLAERVAAYRAGYLPEDR 318 (742)
T ss_pred HHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhc-----------------------------cccccchhheecCCCHHHH
Confidence 56688999999999999999998876532210 0023458899999999999
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
+.+|+.|++|++++||||++|++|||+|++++||+ |+.+. +..+|+||+|||||.| ..|.+++++..+..+
T Consensus 319 ~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~----~~~P~---s~~~y~qRiGRaGR~G--~~g~ai~v~~~~~~d 389 (742)
T TIGR03817 319 RELERALRDGELLGVATTNALELGVDISGLDAVVI----AGFPG---TRASLWQQAGRAGRRG--QGALVVLVARDDPLD 389 (742)
T ss_pred HHHHHHHHcCCceEEEECchHhccCCcccccEEEE----eCCCC---CHHHHHHhccccCCCC--CCcEEEEEeCCChHH
Confidence 99999999999999999999999999999999997 54332 5677999999999999 669999998755443
Q ss_pred H
Q 043190 238 Y 238 (1492)
Q Consensus 238 ~ 238 (1492)
.
T Consensus 390 ~ 390 (742)
T TIGR03817 390 T 390 (742)
T ss_pred H
Confidence 3
No 124
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.87 E-value=2.2e-21 Score=246.92 Aligned_cols=273 Identities=18% Similarity=0.191 Sum_probs=193.6
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh-cCC
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR-QGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 82 (1492)
.++++|+|+||||+++ +.+++++...+ .+....|..|++++|........ +...+...+...+. .++
T Consensus 146 lr~~lqlilmSATl~~-~~l~~~~~~~~-----~I~~~gr~~pV~~~y~~~~~~~~------~~~~v~~~l~~~l~~~~g 213 (812)
T PRK11664 146 LRDDLKLLIMSATLDN-DRLQQLLPDAP-----VIVSEGRSFPVERRYQPLPAHQR------FDEAVARATAELLRQESG 213 (812)
T ss_pred CCccceEEEEecCCCH-HHHHHhcCCCC-----EEEecCccccceEEeccCchhhh------HHHHHHHHHHHHHHhCCC
Confidence 4568999999999965 56888886431 24456777888887765432211 11111122233332 468
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||+++++++.+++.|.+.... ...+..+||+|++++|..+.+
T Consensus 214 ~iLVFlpg~~ei~~l~~~L~~~~~~----------------------------------~~~v~~Lhg~l~~~eq~~~~~ 259 (812)
T PRK11664 214 SLLLFLPGVGEIQRVQEQLASRVAS----------------------------------DVLLCPLYGALSLAEQQKAIL 259 (812)
T ss_pred CEEEEcCCHHHHHHHHHHHHHhccC----------------------------------CceEEEeeCCCCHHHHHHHhc
Confidence 9999999999999999988753110 113788999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEecc----ceecCCCCC-------cccCchhhhhhccCCCCCCccceEEEEe
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGT----QLYDPKAGG-------WRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~----~~~~~~~~~-------~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
.|++|+.+|||||+++++|||+|.+++||+.- ..||+..|. .+..++.||+|||||.+ .|.||.++
T Consensus 260 ~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~---~G~cyrL~ 336 (812)
T PRK11664 260 PAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE---PGICLHLY 336 (812)
T ss_pred cccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCC---CcEEEEec
Confidence 99999999999999999999999999999843 348877652 34567999999999974 79999999
Q ss_pred CCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHH
Q 043190 232 SHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSL 311 (1492)
Q Consensus 232 ~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~ 311 (1492)
+..+. ..+.. .+...-+...|...++.....|. .+..+ ++ +...|
T Consensus 337 t~~~~---~~l~~--~~~PEI~r~dL~~~~L~l~~~g~-~~~~~-~~----------~ld~P------------------ 381 (812)
T PRK11664 337 SKEQA---ERAAA--QSEPEILHSDLSGLLLELLQWGC-HDPAQ-LS----------WLDQP------------------ 381 (812)
T ss_pred CHHHH---hhCcc--CCCCceeccchHHHHHHHHHcCC-CCHHh-CC----------CCCCC------------------
Confidence 86543 33322 22233344566666665444442 22211 11 12222
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhh
Q 043190 312 KQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLR 366 (1492)
Q Consensus 312 ~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~ 366 (1492)
....+++|++.|...|+|+.+ + .+|++|+.||.++++|.-++++.....
T Consensus 382 -~~~~~~~A~~~L~~lgald~~---g--~lT~~G~~m~~lp~~Prla~~ll~a~~ 430 (812)
T PRK11664 382 -PAAALAAAKRLLQQLGALDGQ---G--RLTARGRKMAALGNDPRLAAMLVAAKE 430 (812)
T ss_pred -CHHHHHHHHHHHHHCCCCCCC---C--CcCHHHHHHHhcCCchHHHHHHHHHHh
Confidence 136788999999999999632 3 689999999999999999999988654
No 125
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.87 E-value=2.5e-20 Score=237.39 Aligned_cols=339 Identities=17% Similarity=0.183 Sum_probs=203.0
Q ss_pred CCCHHHHHHHHhhhc-CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 688 HFNPIQTQIFHILYH-TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~-~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
.|.|+|..+...++. ....++++.++|.|||..+.+.+-..+..+...++||+||. .|+.|...++.++| +..+
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF----~l~~ 226 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRF----NLRF 226 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHh----CCCe
Confidence 599999999877653 23589999999999999998777666665556799999997 88888777766655 5555
Q ss_pred EEEcCCCCcc-----hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC--CCccHHHHHHHHHHHhh
Q 043190 767 VEMTGDYTPD-----LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA--ERGPILEVIVSRMRYIS 839 (1492)
Q Consensus 767 ~~~~g~~~~~-----~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~--~~g~~~~~i~~~l~~~~ 839 (1492)
..+.++.... .......+++|+|.+.+..--. +.....-..++++|+||||++.. ...... ...++.+.
T Consensus 227 ~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~-~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~---y~~v~~La 302 (956)
T PRK04914 227 SLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQ-RLEQALAAEWDLLVVDEAHHLVWSEEAPSRE---YQVVEQLA 302 (956)
T ss_pred EEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHH-HHHHHhhcCCCEEEEechhhhccCCCCcCHH---HHHHHHHh
Confidence 5554432111 1222356899999875432100 00111123689999999999852 111111 22222222
Q ss_pred hccCCceEEEEEcCCCCC--hHHHHHHhcCCcceeEe----c--------------------C--------------CCc
Q 043190 840 SQTERAVRFIGLSTALAN--AGDLADWLGVGEIGLFN----F--------------------K--------------PSV 879 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~--~~~~~~~l~~~~~~~~~----~--------------------~--------------~~~ 879 (1492)
. ....+++||||+.. .+++-..+..-.+..+. | . ++.
T Consensus 303 ~---~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~ 379 (956)
T PRK04914 303 E---VIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQ 379 (956)
T ss_pred h---ccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhccc
Confidence 1 23467999999863 22211111110000000 0 0 000
Q ss_pred cccCc-----------------------------EE-------EEeccCCcccccccc----------------------
Q 043190 880 RPVPL-----------------------------EV-------HIQGYPGKFYCPRMN---------------------- 901 (1492)
Q Consensus 880 r~~~l-----------------------------~~-------~~~~~~~~~~~~~~~---------------------- 901 (1492)
...++ .+ .+.+++...+.....
T Consensus 380 ~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l 459 (956)
T PRK04914 380 DIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDML 459 (956)
T ss_pred chhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhc
Confidence 00000 00 001111111000000
Q ss_pred --------------ccC-h---hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHh
Q 043190 902 --------------SMN-K---PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLS 963 (1492)
Q Consensus 902 --------------~~~-~---~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1492)
... . ..+..+.....+.++||||+++..+..++..|.+.
T Consensus 460 ~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~----------------------- 516 (956)
T PRK04914 460 YPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER----------------------- 516 (956)
T ss_pred CHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc-----------------------
Confidence 000 0 00111112234679999999999999988777321
Q ss_pred hcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcC--CceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC
Q 043190 964 QVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANN--KIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP 1041 (1492)
Q Consensus 964 ~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g--~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~ 1041 (1492)
.++.+..+||+|+..+|..+.+.|+++ ..+|||||+++++|+|++.+++||+ || .+.+
T Consensus 517 ----------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn----fD------lP~n 576 (956)
T PRK04914 517 ----------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL----FD------LPFN 576 (956)
T ss_pred ----------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEE----ec------CCCC
Confidence 256788999999999999999999984 5999999999999999999999998 55 3446
Q ss_pred HHHHHHhhcccCCCCCCCceEEEEEecCCc-HHHHHHhhcC
Q 043190 1042 ITDILQMMGRAGRPQYDQHGKAVILVHEPK-KSFYKKFLYE 1081 (1492)
Q Consensus 1042 ~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~-~~~~~~~l~~ 1081 (1492)
+..|.||+||+||.|......+++++.... .+.+..++.+
T Consensus 577 P~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 577 PDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred HHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhh
Confidence 899999999999999544444444444332 3344444444
No 126
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.86 E-value=3.7e-20 Score=241.54 Aligned_cols=336 Identities=15% Similarity=0.166 Sum_probs=194.4
Q ss_pred CCCHHHHHHHHhhh----cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 688 HFNPIQTQIFHILY----HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~----~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
.++++|.+|+..+. ++.++.++++|||||||.++...+.+.+......++|+++|+++|+.|..+.|....... +
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~-~ 491 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEG-D 491 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccc-c
Confidence 58999999998764 345789999999999999877666666555556899999999999999999887631111 1
Q ss_pred CEEEEEcCCCC-cchhccCCCcEEEECchhhhHhhhccc---CccccCcccEEEEecccccCC---C------CccHHHH
Q 043190 764 KEMVEMTGDYT-PDLMALLSADIIISTPEKWDGISRNWH---SRNYVKKVGLMILDEIHLLGA---E------RGPILEV 830 (1492)
Q Consensus 764 ~~v~~~~g~~~-~~~~~~~~~~Iiv~Tpe~l~~l~~~~~---~~~~l~~i~liViDEaH~l~~---~------~g~~~~~ 830 (1492)
..+....+-.. .+.......+|+|+|..++...+.... ....+..+++||+||||+-.. + .......
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~ 571 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLD 571 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhh
Confidence 11111111000 011112357999999998754432111 113467889999999997410 0 0001111
Q ss_pred HHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecC------CC--cc-ccCcEEEEe--cc--CCc---
Q 043190 831 IVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFK------PS--VR-PVPLEVHIQ--GY--PGK--- 894 (1492)
Q Consensus 831 i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~------~~--~r-~~~l~~~~~--~~--~~~--- 894 (1492)
..+..+.+.... +...||||||+.. .-..+||.. ...+.+. .. .. |..+...+. ++ ...
T Consensus 572 ~~~~yr~iL~yF--dA~~IGLTATP~r--~t~~~FG~p-v~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~ 646 (1123)
T PRK11448 572 YVSKYRRVLDYF--DAVKIGLTATPAL--HTTEIFGEP-VYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEV 646 (1123)
T ss_pred HHHHHHHHHhhc--CccEEEEecCCcc--chhHHhCCe-eEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchh
Confidence 123333333322 3567999999852 234445521 1111100 00 00 111111100 00 000
Q ss_pred -ccc------------cc----ccccCh---------hHHHHHhh---cCCCCCeeEEecChHHHHHHHHHHHHHHhcCC
Q 043190 895 -FYC------------PR----MNSMNK---------PAYAAICT---HSPTKPVLIFVSSRRQTRLTALDLIQFAASDE 945 (1492)
Q Consensus 895 -~~~------------~~----~~~~~~---------~~~~~l~~---~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~ 945 (1492)
.+. .. ....++ .+...+.. ....+++||||.++..|+.++..|.+......
T Consensus 647 ~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~ 726 (1123)
T PRK11448 647 EVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKY 726 (1123)
T ss_pred hhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhc
Confidence 000 00 000000 01111111 12347999999999999999888765421100
Q ss_pred CCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCc-eEEEeccccccccCCCCcEEEE
Q 043190 946 TPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKI-QVLVCTSTLAWGVNLPAHLVII 1024 (1492)
Q Consensus 946 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~-~vLvaT~~l~~Gvdip~~~~VI 1024 (1492)
+ ......+..+||+.+ ++..+++.|+++.. +|+|+++++.+|+|+|.+..||
T Consensus 727 -~------------------------~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vV 779 (1123)
T PRK11448 727 -G------------------------QVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLV 779 (1123)
T ss_pred -C------------------------CcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEE
Confidence 0 000223556788874 56789999999887 6999999999999999999888
Q ss_pred ecceeeeCccCccccCCHHHHHHhhcccCCCCCC-CceEEEEE
Q 043190 1025 KGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD-QHGKAVIL 1066 (1492)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~-~~G~~i~l 1066 (1492)
. +.+. -|...|+||+||+.|...+ .+-.++++
T Consensus 780 f----~rpv------kS~~lf~QmIGRgtR~~~~~~K~~f~I~ 812 (1123)
T PRK11448 780 F----LRRV------RSRILYEQMLGRATRLCPEIGKTHFRIF 812 (1123)
T ss_pred E----ecCC------CCHHHHHHHHhhhccCCccCCCceEEEE
Confidence 5 3322 2688999999999997532 24445555
No 127
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.86 E-value=8.7e-21 Score=245.14 Aligned_cols=303 Identities=16% Similarity=0.149 Sum_probs=200.9
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH-hcCCcE
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL-RQGHQA 84 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 84 (1492)
+++|+|+||||+ +.+.++++++..+ + +....|..|++.+|............... +.+...+.+.. ...+++
T Consensus 210 pdLKlIlmSATl-d~~~fa~~F~~ap---v--I~V~Gr~~PVev~Y~~~~~~~~~~~~~~~-~~i~~~I~~l~~~~~GdI 282 (1283)
T TIGR01967 210 PDLKIIITSATI-DPERFSRHFNNAP---I--IEVSGRTYPVEVRYRPLVEEQEDDDLDQL-EAILDAVDELFAEGPGDI 282 (1283)
T ss_pred CCCeEEEEeCCc-CHHHHHHHhcCCC---E--EEECCCcccceeEEecccccccchhhhHH-HHHHHHHHHHHhhCCCCE
Confidence 478999999999 5789999997542 2 44556777887766543321110000111 11122222222 245789
Q ss_pred EEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHH
Q 043190 85 MVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLF 164 (1492)
Q Consensus 85 lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f 164 (1492)
|||++++++++.+++.|.+.... ...|..+||+|++++|..+++.+
T Consensus 283 LVFLpg~~EI~~l~~~L~~~~~~----------------------------------~~~VlpLhg~Ls~~eQ~~vf~~~ 328 (1283)
T TIGR01967 283 LIFLPGEREIRDAAEILRKRNLR----------------------------------HTEILPLYARLSNKEQQRVFQPH 328 (1283)
T ss_pred EEeCCCHHHHHHHHHHHHhcCCC----------------------------------CcEEEeccCCCCHHHHHHHhCCC
Confidence 99999999999999888653110 11277899999999999986543
Q ss_pred hCCCccEEEeccccccccCCCcEEEEEecc----ceecCCCCC-------cccCchhhhhhccCCCCCCccceEEEEeCC
Q 043190 165 SEGLLKVLVCTATLAWGVNLPAHTVVIKGT----QLYDPKAGG-------WRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 165 ~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~----~~~~~~~~~-------~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~ 233 (1492)
+..+||+||+++++|||+|++++||+.. ..||+..+- .+..++.||+|||||.| .|.||.+++.
T Consensus 329 --~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte 403 (1283)
T TIGR01967 329 --SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSE 403 (1283)
T ss_pred --CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCH
Confidence 3479999999999999999999999843 457776542 23357999999999997 7999999986
Q ss_pred ccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHH
Q 043190 234 DKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQ 313 (1492)
Q Consensus 234 ~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~ 313 (1492)
++... +.. .+...-+..+|...++...+.|. .++.+ |- +...| .
T Consensus 404 ~~~~~---~~~--~~~PEIlR~~L~~viL~l~~lg~-~di~~--------f~---fldpP--------------~----- 447 (1283)
T TIGR01967 404 EDFNS---RPE--FTDPEILRTNLASVILQMLALRL-GDIAA--------FP---FIEAP--------------D----- 447 (1283)
T ss_pred HHHHh---hhh--ccCcccccccHHHHHHHHHhcCC-CCccc--------cc---CCCCC--------------C-----
Confidence 65433 211 12223334456666665544442 11110 10 11111 1
Q ss_pred HHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhH
Q 043190 314 RALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEE 393 (1492)
Q Consensus 314 ~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e 393 (1492)
.+.+..+++.|...|+|+.+ ++...+|++|+.||.++++|..++++..+...+ +..+++.+.|...+ .++..++.+
T Consensus 448 ~~~i~~A~~~L~~LGAld~~--~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~g-cl~e~l~IaA~Ls~-~dp~~~p~~ 523 (1283)
T TIGR01967 448 PRAIRDGFRLLEELGALDDD--EAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLG-CLQEVLIIASALSI-QDPRERPME 523 (1283)
T ss_pred HHHHHHHHHHHHHCCCCCCC--CCCccccHHHHHHhhcCCChHHHHHHHHhhhcC-CHHHHHHHHHHHcC-CCcCCCcch
Confidence 46788999999999999743 334679999999999999999999999876655 44556666655443 344444444
Q ss_pred H
Q 043190 394 Q 394 (1492)
Q Consensus 394 ~ 394 (1492)
+
T Consensus 524 ~ 524 (1283)
T TIGR01967 524 K 524 (1283)
T ss_pred h
Confidence 3
No 128
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.85 E-value=5.1e-20 Score=226.31 Aligned_cols=331 Identities=17% Similarity=0.148 Sum_probs=203.9
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. |++.|.-..-.+ +.|+ |....||+|||+++.+|++..... |..+-+++|+--||.|-++.+...+... |+
T Consensus 78 g~~-~~dvQlig~l~l-~~G~--iaEm~TGEGKTLvA~l~a~l~al~--G~~v~vvT~neyLA~Rd~e~~~~~~~~L-Gl 150 (796)
T PRK12906 78 GLR-PFDVQIIGGIVL-HEGN--IAEMKTGEGKTLTATLPVYLNALT--GKGVHVVTVNEYLSSRDATEMGELYRWL-GL 150 (796)
T ss_pred CCC-CchhHHHHHHHH-hcCC--cccccCCCCCcHHHHHHHHHHHHc--CCCeEEEeccHHHHHhhHHHHHHHHHhc-CC
Confidence 554 777887665544 3554 889999999999999998877664 8899999999999999999888866554 99
Q ss_pred EEEEEcCCCCcch-hccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc--CCCCc-----------
Q 043190 765 EMVEMTGDYTPDL-MALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL--GAERG----------- 825 (1492)
Q Consensus 765 ~v~~~~g~~~~~~-~~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l--~~~~g----------- 825 (1492)
+|+.++|+.+... +..-.+||+++|...| +.+-.+.. .....+.+.+.||||+|.+ ++.+.
T Consensus 151 ~vg~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~ 230 (796)
T PRK12906 151 TVGLNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKA 230 (796)
T ss_pred eEEEeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCCCCcc
Confidence 9999999876543 3345789999999875 32322211 1223457789999999943 22121
Q ss_pred -cHHHHHHHHHHHhhhcc---------------CCceEEEEEcC----------CCCC---hH--HHHHHhc--------
Q 043190 826 -PILEVIVSRMRYISSQT---------------ERAVRFIGLST----------ALAN---AG--DLADWLG-------- 866 (1492)
Q Consensus 826 -~~~~~i~~~l~~~~~~~---------------~~~~~ii~lSA----------Tl~~---~~--~~~~~l~-------- 866 (1492)
..+..+....+.+.... ....+.+.++. .+++ .+ .+..|+.
T Consensus 231 ~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~l 310 (796)
T PRK12906 231 TDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALRANYI 310 (796)
T ss_pred hHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHHHHHH
Confidence 11222211112111110 00111222221 0111 00 1122211
Q ss_pred --CCcc------eeEec-CCCccccC-------------------c------------------EEEEeccCCc------
Q 043190 867 --VGEI------GLFNF-KPSVRPVP-------------------L------------------EVHIQGYPGK------ 894 (1492)
Q Consensus 867 --~~~~------~~~~~-~~~~r~~~-------------------l------------------~~~~~~~~~~------ 894 (1492)
.+.. .+... ....|..+ + ...+.|..+.
T Consensus 311 ~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~~e~~ 390 (796)
T PRK12906 311 MLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEE 390 (796)
T ss_pred HhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCHHHHH
Confidence 0000 00000 00000000 0 0011111111
Q ss_pred ---------------------------cccccccccChhHHHHH-hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCC
Q 043190 895 ---------------------------FYCPRMNSMNKPAYAAI-CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDET 946 (1492)
Q Consensus 895 ---------------------------~~~~~~~~~~~~~~~~l-~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~ 946 (1492)
.+.... .....+...+ ..+..+.|+||||+|+..++.++..|.+.
T Consensus 391 Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~-~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~------ 463 (796)
T PRK12906 391 EFREIYNMEVITIPTNRPVIRKDSPDLLYPTLD-SKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEA------ 463 (796)
T ss_pred HHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHH-HHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHC------
Confidence 000000 0001122222 23457899999999999999999887442
Q ss_pred CcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCC---CcE--
Q 043190 947 PRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP---AHL-- 1021 (1492)
Q Consensus 947 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip---~~~-- 1021 (1492)
+.....+||++...++..+.++++.|. |+|||++++||.||+ ++.
T Consensus 464 ----------------------------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~ 513 (796)
T PRK12906 464 ----------------------------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKEL 513 (796)
T ss_pred ----------------------------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhh
Confidence 566789999999999999999888886 999999999999995 777
Q ss_pred ---EEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1022 ---VIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1022 ---~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+||. ++ .+-+...+.|+.||+||.| .+|.+..+++-++
T Consensus 514 GGLhVI~----te------~pes~ri~~Ql~GRtGRqG--~~G~s~~~~sleD 554 (796)
T PRK12906 514 GGLAVIG----TE------RHESRRIDNQLRGRSGRQG--DPGSSRFYLSLED 554 (796)
T ss_pred CCcEEEe----ee------cCCcHHHHHHHhhhhccCC--CCcceEEEEeccc
Confidence 8886 22 2335789999999999988 8999999988765
No 129
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=4.9e-20 Score=225.63 Aligned_cols=358 Identities=20% Similarity=0.206 Sum_probs=232.9
Q ss_pred CCCHHHHHHHHhhhcC---CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHILYHT---DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~---~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.+++-|..++..+..+ ....++.|.||||||.+|+-.|-+.+.+ |+.+|+++|-.+|..|+.++|+.+| |.
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--GkqvLvLVPEI~Ltpq~~~rf~~rF----g~ 271 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--GKQVLVLVPEIALTPQLLARFKARF----GA 271 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--CCEEEEEeccccchHHHHHHHHHHh----CC
Confidence 5899999999988744 4789999999999999999999998886 7999999999999999999999988 67
Q ss_pred EEEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEeccccc--CCC---CccHHHHHH
Q 043190 765 EMVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL--GAE---RGPILEVIV 832 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l--~~~---~g~~~~~i~ 832 (1492)
++..++++.+...+. ..++.|+|+|=- .....++++++|||||-|-- -.+ +...-+..+
T Consensus 272 ~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRS---------AlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~ 342 (730)
T COG1198 272 KVAVLHSGLSPGERYRVWRRARRGEARVVIGTRS---------ALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAV 342 (730)
T ss_pred ChhhhcccCChHHHHHHHHHHhcCCceEEEEech---------hhcCchhhccEEEEeccccccccCCcCCCcCHHHHHH
Confidence 889999988765432 247899999932 22345889999999999943 222 333333333
Q ss_pred HHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcc--eeEecCCCc-cccCcEEEEeccCCccccccccccChhHHH
Q 043190 833 SRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEI--GLFNFKPSV-RPVPLEVHIQGYPGKFYCPRMNSMNKPAYA 909 (1492)
Q Consensus 833 ~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~--~~~~~~~~~-r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1492)
-|-+ ..+..+|+-|||++ +..|..+... ....+.... +..+..+.+.+........ .......++.
T Consensus 343 ~Ra~------~~~~pvvLgSATPS----LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~-~~~lS~~Ll~ 411 (730)
T COG1198 343 LRAK------KENAPVVLGSATPS----LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLET-GRSLSPALLE 411 (730)
T ss_pred HHHH------HhCCCEEEecCCCC----HHHHHhhhcCceEEEEccccccccCCCcceEEecccccccc-CccCCHHHHH
Confidence 3322 23788999999974 3444433222 222222221 1112233333222211111 0114456666
Q ss_pred HHhhc-CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcc-------------------------cC----------CC
Q 043190 910 AICTH-SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQ-------------------------FL----------GM 953 (1492)
Q Consensus 910 ~l~~~-~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~-------------------------~~----------~~ 953 (1492)
.+... ..+.++|+|+|.|..+-.+...=|.....+.+.+. +. +.
T Consensus 412 ~i~~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~ 491 (730)
T COG1198 412 AIRKTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGP 491 (730)
T ss_pred HHHHHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecc
Confidence 66544 67889999999998765554333322211111111 00 11
Q ss_pred ChHHHHHHHhhcCcHHHHHHh-ccceEeecCCCCHHH--HHHHHHHHhcCCceEEEeccccccccCCCCcEEEEe--cce
Q 043190 954 PEEDLQMVLSQVTDQNLRQTL-QFGIGLHHAGLNDKD--RSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIK--GTE 1028 (1492)
Q Consensus 954 ~~~~~~~~~~~~~~~~l~~~~-~~~v~~~h~~l~~~~--R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~--~~~ 1028 (1492)
..+.++ +.|.... +..+..+-++..... -+..+..|.+|+.+|||.|++++.|.|+|+++.|.. ...
T Consensus 492 Gterie--------eeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~ 563 (730)
T COG1198 492 GTERIE--------EELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADT 563 (730)
T ss_pred cHHHHH--------HHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechh
Confidence 111221 2333333 567777777766543 457789999999999999999999999999987652 111
Q ss_pred eeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcC
Q 043190 1029 YYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~ 1081 (1492)
....++-+..+-....+.|-.|||||.+ .+|.+++.+..++...++....+
T Consensus 564 ~L~~~DfRA~Er~fqll~QvaGRAgR~~--~~G~VvIQT~~P~hp~i~~~~~~ 614 (730)
T COG1198 564 GLGSPDFRASERTFQLLMQVAGRAGRAG--KPGEVVIQTYNPDHPAIQALKRG 614 (730)
T ss_pred hhcCCCcchHHHHHHHHHHHHhhhccCC--CCCeEEEEeCCCCcHHHHHHHhc
Confidence 1111111112223678999999999976 89999999998887666655544
No 130
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1.5e-19 Score=223.16 Aligned_cols=128 Identities=17% Similarity=0.178 Sum_probs=97.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHH-HHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAML-HLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il-~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
|+. |+++|--..-.+ +.|+ |..++||+|||+++.+|++ ..+. +..+-+++|+..||.|.++.+...+ ..+|
T Consensus 79 g~~-~~dvQlig~l~L-~~G~--Iaem~TGeGKTLva~lpa~l~aL~---G~~V~IvTpn~yLA~rd~e~~~~l~-~~LG 150 (830)
T PRK12904 79 GMR-HFDVQLIGGMVL-HEGK--IAEMKTGEGKTLVATLPAYLNALT---GKGVHVVTVNDYLAKRDAEWMGPLY-EFLG 150 (830)
T ss_pred CCC-CCccHHHhhHHh-cCCc--hhhhhcCCCcHHHHHHHHHHHHHc---CCCEEEEecCHHHHHHHHHHHHHHH-hhcC
Confidence 554 777777655544 3443 8899999999999999996 5553 5568899999999999999888755 4559
Q ss_pred CEEEEEcCCCCcchh-ccCCCcEEEECchhh-hHhhhcccC----ccccCcccEEEEeccccc
Q 043190 764 KEMVEMTGDYTPDLM-ALLSADIIISTPEKW-DGISRNWHS----RNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l-~~l~~~~~~----~~~l~~i~liViDEaH~l 820 (1492)
++|+.++|+.+...+ ..-.++|+++||+.| .+.++.... ...++.+.++||||||.+
T Consensus 151 lsv~~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsi 213 (830)
T PRK12904 151 LSVGVILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSI 213 (830)
T ss_pred CeEEEEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhh
Confidence 999999998775533 233689999999998 566665331 124678899999999954
No 131
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.84 E-value=1.3e-19 Score=211.01 Aligned_cols=303 Identities=16% Similarity=0.221 Sum_probs=219.7
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH--hcCC
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL--RQGH 82 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 82 (1492)
.+++++|.+|||+ |++.|++|++..+ ++....|..|++..|..-+..++... .+..+++.- .+.+
T Consensus 193 R~~LklIimSATl-da~kfS~yF~~a~-----i~~i~GR~fPVei~y~~~p~~dYv~a-------~~~tv~~Ih~~E~~G 259 (674)
T KOG0922|consen 193 RPDLKLIIMSATL-DAEKFSEYFNNAP-----ILTIPGRTFPVEILYLKEPTADYVDA-------ALITVIQIHLTEPPG 259 (674)
T ss_pred CCCceEEEEeeee-cHHHHHHHhcCCc-----eEeecCCCCceeEEeccCCchhhHHH-------HHHHHHHHHccCCCC
Confidence 4578999999999 9999999998753 46678999999888766444333221 111122211 4567
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
.+|||.+++.+++..++.|.+.....+... ..-+-..||+|+.+++.+|.+
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~-----------------------------~~~~lply~aL~~e~Q~rvF~ 310 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDC-----------------------------PELILPLYGALPSEEQSRVFD 310 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccC-----------------------------cceeeeecccCCHHHhhcccc
Confidence 899999999999999999988755422110 001556899999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEec----cceecCCCCC-------cccCchhhhhhccCCCCCCccceEEEEe
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAGG-------WRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~~-------~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
--..|..||++||++++..|.+|.+.+||++ ...|+|..|- .+..+..||+|||||.| .|.|+.++
T Consensus 311 p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~---pGkcyRLY 387 (674)
T KOG0922|consen 311 PAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG---PGKCYRLY 387 (674)
T ss_pred CCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC---CceEEEee
Confidence 9999999999999999999999999999984 4558887652 35566788999999987 79999999
Q ss_pred CCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHH
Q 043190 232 SHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSL 311 (1492)
Q Consensus 232 ~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~ 311 (1492)
+.++ |.++...+.| .-...+|...++...++|. +||..+. +.+.|.
T Consensus 388 te~~---~~~~~~~~~P--EI~R~~Ls~~vL~Lkalgi---------------------~d~l~F~-----f~d~P~--- 433 (674)
T KOG0922|consen 388 TESA---YDKMPLQTVP--EIQRVNLSSAVLQLKALGI---------------------NDPLRFP-----FIDPPP--- 433 (674)
T ss_pred eHHH---HhhcccCCCC--ceeeechHHHHHHHHhcCC---------------------CCcccCC-----CCCCCC---
Confidence 8654 4554444444 3334567777777777762 3444331 111222
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCceEeCC-CcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccc
Q 043190 312 KQRALVTDAARALDKAKMMRFDEKSGNFYCTE-LGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVR 390 (1492)
Q Consensus 312 ~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~-~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R 390 (1492)
.+.+..||+.|...|+|+.+ + .+|+ +|+.||.++++|...+.+..+-.-+ +..+++.+.++.. ..++..|
T Consensus 434 --~~~l~~AL~~L~~lgald~~---g--~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~g-c~~e~l~i~a~Ls-v~~~f~~ 504 (674)
T KOG0922|consen 434 --PEALEEALEELYSLGALDDR---G--KLTSPLGRQMAELPLEPHLSKMLLKSSELG-CSEEILTIAAMLS-VQSVFSR 504 (674)
T ss_pred --hHHHHHHHHHHHhcCcccCc---C--CcCchHHhhhhhcCCCcchhhhhhhccccC-Ccchhhhheeeee-ccceecC
Confidence 46788999999999999732 3 4566 9999999999999999999854444 5557777777655 5566555
Q ss_pred hhHHH
Q 043190 391 DEEQN 395 (1492)
Q Consensus 391 ~~e~~ 395 (1492)
+.++.
T Consensus 505 p~~~~ 509 (674)
T KOG0922|consen 505 PKDKK 509 (674)
T ss_pred ccchh
Confidence 54443
No 132
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.84 E-value=7.9e-20 Score=233.59 Aligned_cols=324 Identities=22% Similarity=0.226 Sum_probs=201.4
Q ss_pred CCHHHHHHHHhhhc--CCC-cEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 689 FNPIQTQIFHILYH--TDN-NVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~--~~~-~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
.++.|..++..+.. ... .+++.||||+|||.+++.+.+..+... ...+++++.|++++++++++++...++.. +
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~-~ 274 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF-S 274 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc-c
Confidence 47888888887652 234 889999999999999999888776652 47899999999999999999998766543 2
Q ss_pred CEEEEEcCCCCcchh-----------------ccCCCcEEEECchhhhHhhhcccCcccc--CcccEEEEecccccCCCC
Q 043190 764 KEMVEMTGDYTPDLM-----------------ALLSADIIISTPEKWDGISRNWHSRNYV--KKVGLMILDEIHLLGAER 824 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~-----------------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l--~~i~liViDEaH~l~~~~ 824 (1492)
......+|....... ...-..+.++||-+.....-.......+ =..+++|+||+|.+.++.
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~ 354 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET 354 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc
Confidence 222213443221100 0011245555655443311111111001 134789999999997663
Q ss_pred -ccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCcccccccc
Q 043190 825 -GPILEVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMN 901 (1492)
Q Consensus 825 -g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~ 901 (1492)
-..+..++..+.. .+..+|+||||+|.. +.+...++........ .. ..+..... ............
T Consensus 355 ~~~~l~~~i~~l~~------~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~--~~--~~~~~~e~-~~~~~~~~~~~~ 423 (733)
T COG1203 355 MLAALLALLEALAE------AGVPVLLMSATLPPFLKEKLKKALGKGREVVEN--AK--FCPKEDEP-GLKRKERVDVED 423 (733)
T ss_pred hHHHHHHHHHHHHh------CCCCEEEEecCCCHHHHHHHHHHHhcccceecc--cc--cccccccc-ccccccchhhhh
Confidence 2333333333332 378899999999973 3344444333221111 00 00000000 000000000000
Q ss_pred cc-ChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEe
Q 043190 902 SM-NKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGL 980 (1492)
Q Consensus 902 ~~-~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~ 980 (1492)
.. .............+++++|.|||.+.|..++..|... +..+..
T Consensus 424 ~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~----------------------------------~~~v~L 469 (733)
T COG1203 424 GPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEK----------------------------------GPKVLL 469 (733)
T ss_pred hhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhc----------------------------------CCCEEE
Confidence 00 0001112233467889999999999999999888542 115899
Q ss_pred ecCCCCHHHHHHHHHHHh----cCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCC
Q 043190 981 HHAGLNDKDRSLVEELFA----NNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQ 1056 (1492)
Q Consensus 981 ~h~~l~~~~R~~v~~~f~----~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g 1056 (1492)
+||.+...+|...++.++ .+...|+|||++.+.|||+.. +++|. ..-|+.+++||+||++|-|
T Consensus 470 lHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidf-d~mIT------------e~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 470 LHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDF-DVLIT------------ELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred EecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEecccc-Ceeee------------cCCCHHHHHHHHHHHhhcc
Confidence 999999999999888654 567899999999999999984 44542 2237999999999999998
Q ss_pred CCCceEEEEEecCCc
Q 043190 1057 YDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1057 ~~~~G~~i~l~~~~~ 1071 (1492)
.+..|.+++......
T Consensus 537 ~~~~~~~~v~~~~~~ 551 (733)
T COG1203 537 KKENGKIYVYNDEER 551 (733)
T ss_pred cccCCceeEeecccC
Confidence 767788888766544
No 133
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=3.6e-19 Score=218.62 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=106.5
Q ss_pred CCCCC---CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 685 NFSHF---NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 685 ~~~~l---~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
||..| +|+|.|+++.+. .+++++..++||+|||++|.+|++..+.. +..+++++|+++||.|.++.+.. +...
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~-l~~gvIAeaqTGeGKTLAf~LP~l~~aL~--g~~v~IVTpTrELA~Qdae~m~~-L~k~ 161 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIA-MHKGFITEMQTGEGKTLTAVMPLYLNALT--GKPVHLVTVNDYLAQRDCEWVGS-VLRW 161 (970)
T ss_pred cccCCCCCChHHHHHhhhhh-cCCCeEEEeCCCCChHHHHHHHHHHHHhh--cCCeEEEeCCHHHHHHHHHHHHH-HHhh
Confidence 67777 999999999988 67899999999999999999999987654 34589999999999999987776 5556
Q ss_pred cCCEEEEEcCCCCcchhc-cCCCcEEEECchhh-hHhhhcccCc-----cccCcccEEEEeccccc
Q 043190 762 LGKEMVEMTGDYTPDLMA-LLSADIIISTPEKW-DGISRNWHSR-----NYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 762 ~g~~v~~~~g~~~~~~~~-~~~~~Iiv~Tpe~l-~~l~~~~~~~-----~~l~~i~liViDEaH~l 820 (1492)
+|++++.+.|+.....+. ..+++|+|+||+++ .++++..... ...+.+.++||||||.+
T Consensus 162 lGLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsm 227 (970)
T PRK12899 162 LGLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSI 227 (970)
T ss_pred cCCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhh
Confidence 699999999887755432 23689999999999 7777764221 12246689999999954
No 134
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=2.8e-20 Score=191.72 Aligned_cols=181 Identities=22% Similarity=0.356 Sum_probs=133.2
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCccccc-ceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIP-LAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
.+++.|++++|||+|. ..+..+++... |-.+. +..+.-|.. ++++|+.+....+ +...+-+ +|+ .+ --
T Consensus 197 lp~~~Qvv~~SATlp~eilemt~kfmtd-pvril-vkrdeltlEgIKqf~v~ve~Eew--KfdtLcd-LYd----~L-tI 266 (400)
T KOG0328|consen 197 LPPGAQVVLVSATLPHEILEMTEKFMTD-PVRIL-VKRDELTLEGIKQFFVAVEKEEW--KFDTLCD-LYD----TL-TI 266 (400)
T ss_pred CCCCceEEEEeccCcHHHHHHHHHhcCC-ceeEE-EecCCCchhhhhhheeeechhhh--hHhHHHH-Hhh----hh-eh
Confidence 5779999999999996 55555555544 33333 344444444 5566665543221 2221111 121 11 23
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
.|++||||||+.+..+.+++.+.. +-|...||.|++++|..+.
T Consensus 267 tQavIFcnTk~kVdwLtekm~~~n-------------------------------------ftVssmHGDm~qkERd~im 309 (400)
T KOG0328|consen 267 TQAVIFCNTKRKVDWLTEKMREAN-------------------------------------FTVSSMHGDMEQKERDKIM 309 (400)
T ss_pred heEEEEecccchhhHHHHHHHhhC-------------------------------------ceeeeccCCcchhHHHHHH
Confidence 589999999999988888776542 2388889999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
+.||+|+-+||+||++-|||+|+|.++.||+ ||-+. ....|+||+||+||.| +.|.||-++..+++..|.
T Consensus 310 ~dFRsg~SrvLitTDVwaRGiDv~qVslviN----YDLP~---nre~YIHRIGRSGRFG--RkGvainFVk~~d~~~lr 379 (400)
T KOG0328|consen 310 NDFRSGKSRVLITTDVWARGIDVQQVSLVIN----YDLPN---NRELYIHRIGRSGRFG--RKGVAINFVKSDDLRILR 379 (400)
T ss_pred HHhhcCCceEEEEechhhccCCcceeEEEEe----cCCCc---cHHHHhhhhccccccC--CcceEEEEecHHHHHHHH
Confidence 9999999999999999999999999999998 66433 2244999999999999 889999999988866554
No 135
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=4.4e-20 Score=210.95 Aligned_cols=311 Identities=17% Similarity=0.178 Sum_probs=231.5
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHH--HhcC
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDS--LRQG 81 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 81 (1492)
..++++++..|||+ |++.|..|+...+ +|....|..|++.+|-..++.++.. .++..+.+. -++.
T Consensus 407 ~RpdLKllIsSAT~-DAekFS~fFDdap-----IF~iPGRRyPVdi~Yt~~PEAdYld-------Aai~tVlqIH~tqp~ 473 (902)
T KOG0923|consen 407 FRPDLKLLISSATM-DAEKFSAFFDDAP-----IFRIPGRRYPVDIFYTKAPEADYLD-------AAIVTVLQIHLTQPL 473 (902)
T ss_pred hCCcceEEeecccc-CHHHHHHhccCCc-----EEeccCcccceeeecccCCchhHHH-------HHHhhheeeEeccCC
Confidence 35789999999998 9999999998654 4556788889988776666554322 112222211 1457
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+.+|||.....+.+...+.|.+....-+... . + --|...||+||.+.+..|+
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski----------------------~---e---liv~PiYaNLPselQakIF 525 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKI----------------------R---E---LIVLPIYANLPSELQAKIF 525 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhcccc----------------------c---e---EEEeeccccCChHHHHhhc
Confidence 8999999999999988888877655432210 0 1 1177889999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEec----cceecCCCC-------CcccCchhhhhhccCCCCCCccceEEEE
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAG-------GWRDLGMLDIFGRAGRPQFDRSGEGIII 230 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~-------~~~~~~~~~~~GRAGR~~~d~~G~~i~~ 230 (1492)
+--..|..||++||++++..+.++++..||.. .+.|+|+.| +.+..+..||+|||||.| .|.|+.+
T Consensus 526 ePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg---PGKCfRL 602 (902)
T KOG0923|consen 526 EPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG---PGKCFRL 602 (902)
T ss_pred CCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC---CCceEEe
Confidence 99999999999999999999999999999973 245888776 345667899999999998 6999999
Q ss_pred eCCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHH
Q 043190 231 TSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLS 310 (1492)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~ 310 (1492)
++.. .|...+. ..++..-...+|...++...++|.- |.+.| -+ ++.|.
T Consensus 603 Yt~~---aY~~eLE-~~t~PEIqRtnL~nvVL~LkSLGI~----Dl~~F--------dF--------------mDpPp-- 650 (902)
T KOG0923|consen 603 YTAW---AYEHELE-EMTVPEIQRTNLGNVVLLLKSLGIH----DLIHF--------DF--------------LDPPP-- 650 (902)
T ss_pred echh---hhhhhhc-cCCCcceeeccchhHHHHHHhcCcc----hhccc--------cc--------------CCCCC--
Confidence 9843 3333222 2344444567888888877777731 11111 11 12221
Q ss_pred HHHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccc
Q 043190 311 LKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVR 390 (1492)
Q Consensus 311 ~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R 390 (1492)
.+.+..||+.|...|++. ....+|.+||.||.|+++|...+++..+-+.. +..+++.+.++.+.+..+..|
T Consensus 651 ---~etL~~aLE~LyaLGALn-----~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~-cs~EiitiaamlS~~~svfyr 721 (902)
T KOG0923|consen 651 ---TETLLKALEQLYALGALN-----HLGELTKLGRRMAEFPVDPMLSKMIVASEKYK-CSEEIITIAAMLSVGASVFYR 721 (902)
T ss_pred ---hHHHHHHHHHHHHhhccc-----cccchhhhhhhhhhcCCCHHHHhHHhhhcccc-chHHHHHHHHHHhcCchheec
Confidence 356778999999999995 33489999999999999999999999876655 558999999999999999999
Q ss_pred hhHHHHHHH
Q 043190 391 DEEQNELET 399 (1492)
Q Consensus 391 ~~e~~~l~~ 399 (1492)
+.++..-..
T Consensus 722 pk~~~v~ad 730 (902)
T KOG0923|consen 722 PKDKQVHAD 730 (902)
T ss_pred chhhhhhhh
Confidence 887655443
No 136
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=7.8e-19 Score=215.65 Aligned_cols=129 Identities=18% Similarity=0.136 Sum_probs=96.0
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. ++++|.-.--.+ +. --|..++||.|||+++.+|++..... +..+.+++|+..||.+-++.+... ...+|+
T Consensus 80 gm~-~ydVQliGgl~L-~~--G~IaEm~TGEGKTL~a~lp~~l~al~--g~~VhIvT~ndyLA~RD~e~m~~l-~~~lGl 152 (908)
T PRK13107 80 EMR-HFDVQLLGGMVL-DS--NRIAEMRTGEGKTLTATLPAYLNALT--GKGVHVITVNDYLARRDAENNRPL-FEFLGL 152 (908)
T ss_pred CCC-cCchHHhcchHh-cC--CccccccCCCCchHHHHHHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHH-HHhcCC
Confidence 554 667775443333 23 34889999999999999999876654 566999999999999998877764 455699
Q ss_pred EEEEEcCCCCcchhccC-CCcEEEECchhh-hHhhhcccC----ccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDLMALL-SADIIISTPEKW-DGISRNWHS----RNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~-~~~Iiv~Tpe~l-~~l~~~~~~----~~~l~~i~liViDEaH~l 820 (1492)
+|+++.|+.....+... .++|+++||+.| .++++.... ....+.+.++||||||.+
T Consensus 153 sv~~i~~~~~~~~r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsi 214 (908)
T PRK13107 153 TVGINVAGLGQQEKKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSI 214 (908)
T ss_pred eEEEecCCCCHHHHHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhh
Confidence 99999998776544333 789999999997 555655311 123467899999999954
No 137
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.82 E-value=8.2e-20 Score=193.79 Aligned_cols=158 Identities=26% Similarity=0.433 Sum_probs=126.7
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEE
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEM 769 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~ 769 (1492)
||+|.++++.+. +++++++.||||+|||+++.++++..+...+..++++++|+++|+.|+++++...+.. .+.++..+
T Consensus 1 t~~Q~~~~~~i~-~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~~~~~ 78 (169)
T PF00270_consen 1 TPLQQEAIEAII-SGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSN-TNVRVVLL 78 (169)
T ss_dssp -HHHHHHHHHHH-TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSSEEEE
T ss_pred CHHHHHHHHHHH-cCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccc-cccccccc
Confidence 689999999998 7899999999999999999999999887654569999999999999999999887665 37788888
Q ss_pred cCCCCcc---hhc-cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccCC
Q 043190 770 TGDYTPD---LMA-LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTER 844 (1492)
Q Consensus 770 ~g~~~~~---~~~-~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~~ 844 (1492)
+|+.... ... ..+++|+|+||+++..+++.... .+.+++++|+||+|.+.. .++..+..+..++.. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~--~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~-----~~ 151 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKI--NISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR-----FK 151 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSS--TGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT-----TT
T ss_pred cccccccccccccccccccccccCcchhhcccccccc--ccccceeeccCcccccccccHHHHHHHHHHHhcC-----CC
Confidence 9887643 112 24699999999999888887333 456699999999998865 444555555554432 22
Q ss_pred ceEEEEEcCCCC
Q 043190 845 AVRFIGLSTALA 856 (1492)
Q Consensus 845 ~~~ii~lSATl~ 856 (1492)
+.+++++|||++
T Consensus 152 ~~~~i~~SAT~~ 163 (169)
T PF00270_consen 152 NIQIILLSATLP 163 (169)
T ss_dssp TSEEEEEESSST
T ss_pred CCcEEEEeeCCC
Confidence 688999999997
No 138
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=2.3e-19 Score=192.56 Aligned_cols=185 Identities=19% Similarity=0.191 Sum_probs=134.4
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.+++.|++.+|||... ...||.-+-.+ +..++.-..+..--++.+.|+.+... ..++..+.. +|. . -.-+
T Consensus 261 lP~~~QllLFSATf~e~V~~Fa~kivpn-~n~i~Lk~eel~L~~IkQlyv~C~~~--~~K~~~l~~-lyg----~-~tig 331 (477)
T KOG0332|consen 261 LPRNQQLLLFSATFVEKVAAFALKIVPN-ANVIILKREELALDNIKQLYVLCACR--DDKYQALVN-LYG----L-LTIG 331 (477)
T ss_pred cCCcceEEeeechhHHHHHHHHHHhcCC-Cceeeeehhhccccchhhheeeccch--hhHHHHHHH-HHh----h-hhhh
Confidence 4678999999999966 44555555443 33344333334444566666655432 222222222 121 1 2237
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
|+||||+||+.+..++..+.+. ++.|+..||.|.-++|..+.+
T Consensus 332 qsiIFc~tk~ta~~l~~~m~~~-------------------------------------Gh~V~~l~G~l~~~~R~~ii~ 374 (477)
T KOG0332|consen 332 QSIIFCHTKATAMWLYEEMRAE-------------------------------------GHQVSLLHGDLTVEQRAAIID 374 (477)
T ss_pred heEEEEeehhhHHHHHHHHHhc-------------------------------------CceeEEeeccchhHHHHHHHH
Confidence 8999999999999998887653 455999999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
.||.|.-+|||+|++.|||||++.+++||+..-+-+.. +.-....|+||+||+||.| +.|.+|-+++.++..
T Consensus 375 ~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~-~~pD~etYlHRiGRtGRFG--kkG~a~n~v~~~~s~ 446 (477)
T KOG0332|consen 375 RFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYT-GEPDYETYLHRIGRTGRFG--KKGLAINLVDDKDSM 446 (477)
T ss_pred HHhcCcceEEEEechhhcccccceEEEEEecCCccccC-CCCCHHHHHHHhccccccc--ccceEEEeecccCcH
Confidence 99999999999999999999999999999844432222 2335567999999999999 889999999876543
No 139
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.82 E-value=1.9e-19 Score=196.97 Aligned_cols=162 Identities=19% Similarity=0.239 Sum_probs=131.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC---CCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ---SDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~---~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
|++.|+++|.++++.++ .++++++++|||+|||++++++++..+... ++++++|++|+++|+.|+.+.+.... ..
T Consensus 18 ~~~~~~~~Q~~~~~~~~-~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~-~~ 95 (203)
T cd00268 18 GFEKPTPIQARAIPPLL-SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLG-KH 95 (203)
T ss_pred CCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHh-cc
Confidence 89999999999999998 589999999999999999999999988764 56799999999999999999988744 33
Q ss_pred cCCEEEEEcCCCCcch--hcc-CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHH
Q 043190 762 LGKEMVEMTGDYTPDL--MAL-LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRY 837 (1492)
Q Consensus 762 ~g~~v~~~~g~~~~~~--~~~-~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~ 837 (1492)
.+.++..++|+..... ... .+++|+|+||+++..++.+.. ..+++++++|+||+|.+.+ .++..+..++.++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l-- 171 (203)
T cd00268 96 TNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--LDLSKVKYLVLDEADRMLDMGFEDQIREILKLL-- 171 (203)
T ss_pred CCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--CChhhCCEEEEeChHHhhccChHHHHHHHHHhC--
Confidence 4788888888766432 222 378999999999988777643 5578999999999998753 3444444444432
Q ss_pred hhhccCCceEEEEEcCCCCC
Q 043190 838 ISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 838 ~~~~~~~~~~ii~lSATl~~ 857 (1492)
....+++++|||+++
T Consensus 172 -----~~~~~~~~~SAT~~~ 186 (203)
T cd00268 172 -----PKDRQTLLFSATMPK 186 (203)
T ss_pred -----CcccEEEEEeccCCH
Confidence 348999999999985
No 140
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=1.6e-18 Score=183.74 Aligned_cols=200 Identities=18% Similarity=0.240 Sum_probs=166.7
Q ss_pred hcCCCHHHHHHHhcCCccC-----CCCccchhHHHHHHHHHhc--CCcccccCC--CCChhHHHHHHHHHHHcCCCCCCc
Q 043190 366 RRHMNDSEVIEMVSHSSEF-----ENIVVRDEEQNELETLVQT--LCPVEVKGG--PSNKHGKISILIQLYISRGWIDTF 436 (1492)
Q Consensus 366 ~~~~~~~~ll~ils~s~Ef-----~~i~~R~~e~~~l~~l~~~--~~~~~~~~~--~~~~~~K~~~Llqa~i~~~~~~~~ 436 (1492)
.+.|....+|.+|+.|.|| +++.-|+.+.-++..|++. ++.-.-++. .-..+.|+.+||.||++|++++.-
T Consensus 8 Tp~M~~kR~imVLags~EFdkqyNk~iqeR~tDn~evP~Lirqi~~vN~K~kE~PL~~pYslKaRvlLhahLsRmpl~~d 87 (520)
T KOG4434|consen 8 TPRMEIKRMIMVLAGSFEFDKQYNKEIQERETDNYEVPRLIRQIAGVNDKGKEQPLSQPYSLKARVLLHAHLSRMPLESD 87 (520)
T ss_pred CchhHHHHHHHHHhcccccChhhchhhhccCCcchHHHHHHHHcccccccccCCCccCchhHHHHHHHHHHHhcCCCChh
Confidence 4556677899999999999 4677899998899888887 111111221 136789999999999999999987
Q ss_pred hhHhhHHHHHHhHHHHHHHHHHHHHhc----------C--cHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHH
Q 043190 437 SLVSDAAYISASLARIMRALFETCLRR----------G--WCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRK 504 (1492)
Q Consensus 437 ~l~~d~~~i~~~~~rl~~al~ei~~~~----------~--~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~ 504 (1492)
+|..|..+|+..++|++..|+.++... + -..+..|||+|+.|+.||+|.-.+||+||| ||.++-+++
T Consensus 88 tLEeDqqfiikkcp~lvqEMVnc~~qLi~May~r~~~r~psiet~eNcmKlspM~vQgLwqfkSPLLQLP-HitednL~~ 166 (520)
T KOG4434|consen 88 TLEEDQQFIIKKCPRLVQEMVNCSQQLIVMAYSRHTRRIPSIETFENCMKLSPMFVQGLWQFKSPLLQLP-HITEDNLQH 166 (520)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHHhccHHHHHHHHHhcChhhcCC-ccchHHHHH
Confidence 899999999999999999999887653 2 235678999999999999999999999999 999999999
Q ss_pred HHHcC-C-ChhHHhhCCHHHHHHHhc--CCchHHHHHHHhccCCceeEEEEEeec--------c-cceEEEEEEE
Q 043190 505 LEERG-A-DLDRLQEMEEKDIGALIR--YTPGGRLVKQYLGYFPSIQLSATVSPI--------T-RTVLKIGLAI 566 (1492)
Q Consensus 505 l~~~~-~-~~~~l~~~~~~~~~~l~~--~~~~~~~i~~~~~~~P~~~i~~~~~~~--------~-~~~~~i~~~~ 566 (1492)
+.++. + |+++|+.+.++++..+|+ +...++++...+.+||++.++...+.+ | +.+++|.|++
T Consensus 167 ~~KKr~vks~qdla~lk~e~rr~lL~~LsdeeYe~vM~VLg~mP~~~~~ik~~V~dded~n~~TaG~vVTv~Vtl 241 (520)
T KOG4434|consen 167 LRKKRKVKSCQDLAVLKAETRRSLLRSLSDEEYEDVMVVLGMMPRLQIEIKTVVEDDEDKNELTAGCVVTVKVTL 241 (520)
T ss_pred HhhhcccccHHHHhhcCHHHHHHHHHhcchHHHHHHHHHHccCcceEEEeeEEEecCCcccceeeeeEEEEEEEE
Confidence 97654 6 999999999999999998 788899999999999999998876543 2 4566666665
No 141
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.81 E-value=2.6e-19 Score=200.04 Aligned_cols=176 Identities=24% Similarity=0.321 Sum_probs=137.5
Q ss_pred CcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceE-EEEEeeCCchhHHHHHhhHHHHHHHHHHHh--cC
Q 043190 6 RMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQ-QYIGISEPNFAARNELLSEICYKKVVDSLR--QG 81 (1492)
Q Consensus 6 ~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 81 (1492)
.-.|.++||||+|. ++.+|+-.... .-+..++...+|+|.-. .++-+.+... ++++.+.++ ..
T Consensus 451 ~yrqT~mftatm~p~verlar~ylr~--pv~vtig~~gk~~~rveQ~v~m~~ed~k-----------~kkL~eil~~~~~ 517 (673)
T KOG0333|consen 451 KYRQTVMFTATMPPAVERLARSYLRR--PVVVTIGSAGKPTPRVEQKVEMVSEDEK-----------RKKLIEILESNFD 517 (673)
T ss_pred ceeEEEEEecCCChHHHHHHHHHhhC--CeEEEeccCCCCccchheEEEEecchHH-----------HHHHHHHHHhCCC
Confidence 34899999999997 66676655443 23456788899999544 4444443221 123333333 35
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
.|+|||+|+++.|+.+|+.|.+. .+.+..+|||-++++|..+.
T Consensus 518 ppiIIFvN~kk~~d~lAk~LeK~-------------------------------------g~~~~tlHg~k~qeQRe~aL 560 (673)
T KOG0333|consen 518 PPIIIFVNTKKGADALAKILEKA-------------------------------------GYKVTTLHGGKSQEQRENAL 560 (673)
T ss_pred CCEEEEEechhhHHHHHHHHhhc-------------------------------------cceEEEeeCCccHHHHHHHH
Confidence 79999999999999999988654 34488899999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
+.|++|.-.|||||++++||||+|+++.||+ ||-.. +..+|.||+||+||+| .+|.|+.+++..+-+-|.
T Consensus 561 ~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin----ydmak---sieDYtHRIGRTgRAG--k~GtaiSflt~~dt~v~y 630 (673)
T KOG0333|consen 561 ADFREGTGDILVATDVAGRGIDIPNVSLVIN----YDMAK---SIEDYTHRIGRTGRAG--KSGTAISFLTPADTAVFY 630 (673)
T ss_pred HHHHhcCCCEEEEecccccCCCCCccceeee----cchhh---hHHHHHHHhccccccc--cCceeEEEeccchhHHHH
Confidence 9999999999999999999999999999998 66433 4557999999999999 889999999888755443
No 142
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.81 E-value=2.1e-19 Score=222.59 Aligned_cols=180 Identities=22% Similarity=0.231 Sum_probs=128.8
Q ss_pred CcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCccccc-ceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 6 RMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIP-LAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 6 ~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
++.|++++|||+|+ .+.++.++..+ + ..+.++...++.. +.+.+..+.... +.. .+++.+........+
T Consensus 299 ~~~q~l~~SATl~~~v~~l~~~~~~~-~-~~i~~~~~~~~~~~v~q~~~~~~~~~---k~~----~l~~~l~~~~~~~~~ 369 (518)
T PLN00206 299 SQPQVLLFSATVSPEVEKFASSLAKD-I-ILISIGNPNRPNKAVKQLAIWVETKQ---KKQ----KLFDILKSKQHFKPP 369 (518)
T ss_pred CCCcEEEEEeeCCHHHHHHHHHhCCC-C-EEEEeCCCCCCCcceeEEEEeccchh---HHH----HHHHHHHhhcccCCC
Confidence 35799999999997 67788887654 2 2223333444433 233333332211 111 111222111123468
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+||||+|+..++.+++.|.... ...+..|||+|++++|..+++.
T Consensus 370 ~iVFv~s~~~a~~l~~~L~~~~------------------------------------g~~~~~~Hg~~~~~eR~~il~~ 413 (518)
T PLN00206 370 AVVFVSSRLGADLLANAITVVT------------------------------------GLKALSIHGEKSMKERREVMKS 413 (518)
T ss_pred EEEEcCCchhHHHHHHHHhhcc------------------------------------CcceEEeeCCCCHHHHHHHHHH
Confidence 9999999999999888775321 2237889999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
|++|+++|||||++|++|||+|++++||+ ||... +..+|+||+|||||.| ..|.|+++++.++...+
T Consensus 414 Fr~G~~~ILVaTdvl~rGiDip~v~~VI~----~d~P~---s~~~yihRiGRaGR~g--~~G~ai~f~~~~~~~~~ 480 (518)
T PLN00206 414 FLVGEVPVIVATGVLGRGVDLLRVRQVII----FDMPN---TIKEYIHQIGRASRMG--EKGTAIVFVNEEDRNLF 480 (518)
T ss_pred HHCCCCCEEEEecHhhccCCcccCCEEEE----eCCCC---CHHHHHHhccccccCC--CCeEEEEEEchhHHHHH
Confidence 99999999999999999999999999997 76543 5667999999999999 67999999987765443
No 143
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.3e-19 Score=195.79 Aligned_cols=183 Identities=23% Similarity=0.320 Sum_probs=140.5
Q ss_pred CCCCCcccEEEEcccCCChHHHHHhcCCCCCCceE-eecCCccccc-ceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh
Q 043190 2 ESTQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLF-FFDSSYRPIP-LAQQYIGISEPNFAARNELLSEICYKKVVDSLR 79 (1492)
Q Consensus 2 ~~~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~-~~~~~~rpv~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1492)
+..+.+.|.+++|||+|. .+.+...+.++..+- ...+.|+.|| +.++|+.++.+..... ++ .+++. .
T Consensus 230 k~ip~erqt~LfsATMt~--kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~y------LV--~ll~e-~ 298 (476)
T KOG0330|consen 230 KVIPRERQTFLFSATMTK--KVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTY------LV--YLLNE-L 298 (476)
T ss_pred HhcCccceEEEEEeecch--hhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchh------HH--HHHHh-h
Confidence 456788999999999986 444444555443332 3455678887 7777877765432211 11 11112 3
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.|.++||||+|...+..+|-.|..... ..-..||.|+++.|.-
T Consensus 299 ~g~s~iVF~~t~~tt~~la~~L~~lg~-------------------------------------~a~~LhGqmsq~~Rlg 341 (476)
T KOG0330|consen 299 AGNSVIVFCNTCNTTRFLALLLRNLGF-------------------------------------QAIPLHGQMSQSKRLG 341 (476)
T ss_pred cCCcEEEEEeccchHHHHHHHHHhcCc-------------------------------------ceecccchhhHHHHHH
Confidence 468999999999999999987765422 2445699999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
..+.|++|...||+||++++||+|+|.+++||+ ||-+. ...+|+||+||+||+| .+|.+|.++++.+++.|
T Consensus 342 ~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN----yDiP~---~skDYIHRvGRtaRaG--rsG~~ItlVtqyDve~~ 412 (476)
T KOG0330|consen 342 ALNKFKAGARSILVCTDVASRGLDIPHVDVVVN----YDIPT---HSKDYIHRVGRTARAG--RSGKAITLVTQYDVELV 412 (476)
T ss_pred HHHHHhccCCcEEEecchhcccCCCCCceEEEe----cCCCC---cHHHHHHHcccccccC--CCcceEEEEehhhhHHH
Confidence 999999999999999999999999999999998 66432 4556999999999999 89999999999888877
Q ss_pred HH
Q 043190 240 LR 241 (1492)
Q Consensus 240 ~~ 241 (1492)
.+
T Consensus 413 qr 414 (476)
T KOG0330|consen 413 QR 414 (476)
T ss_pred HH
Confidence 65
No 144
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.80 E-value=2.8e-19 Score=220.40 Aligned_cols=179 Identities=20% Similarity=0.280 Sum_probs=132.3
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
..+...|++++|||+|+ ...++..+... +..+ .+........+.++++.+.... +...+..+ +.. ..+
T Consensus 174 ~~~~~~q~ll~SAT~~~~~~~l~~~~~~~-~~~i-~~~~~~~~~~i~~~~~~~~~~~---k~~~l~~l-----l~~-~~~ 242 (460)
T PRK11776 174 QAPARRQTLLFSATYPEGIAAISQRFQRD-PVEV-KVESTHDLPAIEQRFYEVSPDE---RLPALQRL-----LLH-HQP 242 (460)
T ss_pred hCCcccEEEEEEecCcHHHHHHHHHhcCC-CEEE-EECcCCCCCCeeEEEEEeCcHH---HHHHHHHH-----HHh-cCC
Confidence 35677899999999986 56666665544 2222 2333333444666666554321 22222111 111 345
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
.++||||+|++.|+.+++.|.+. ...+..+||+|++.+|..++
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~-------------------------------------~~~v~~~hg~~~~~eR~~~l 285 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQ-------------------------------------GFSALALHGDLEQRDRDQVL 285 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhC-------------------------------------CCcEEEEeCCCCHHHHHHHH
Confidence 68999999999999999988643 23488999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
+.|++|.++|||||+++++|||+|++++||+ |+.. .+..+|+||+|||||.| ..|.|+.++.+++...
T Consensus 286 ~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~----~d~p---~~~~~yiqR~GRtGR~g--~~G~ai~l~~~~e~~~ 353 (460)
T PRK11776 286 VRFANRSCSVLVATDVAARGLDIKALEAVIN----YELA---RDPEVHVHRIGRTGRAG--SKGLALSLVAPEEMQR 353 (460)
T ss_pred HHHHcCCCcEEEEecccccccchhcCCeEEE----ecCC---CCHhHhhhhcccccCCC--CcceEEEEEchhHHHH
Confidence 9999999999999999999999999999997 4432 24556999999999999 6799999998876544
No 145
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.80 E-value=3.4e-19 Score=223.32 Aligned_cols=179 Identities=20% Similarity=0.272 Sum_probs=133.1
Q ss_pred CcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH---hc
Q 043190 6 RMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL---RQ 80 (1492)
Q Consensus 6 ~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 80 (1492)
+.+++++||||.+. .+|+.+.|+.. . ...+..+..|| .+... +..+.. .. ...+...+ ..
T Consensus 615 p~vPilALTATAT~~V~eDI~~~L~l~-~-~~vfr~Sf~Rp-NL~y~---Vv~k~k-k~--------le~L~~~I~~~~~ 679 (1195)
T PLN03137 615 PNIPVLALTATATASVKEDVVQALGLV-N-CVVFRQSFNRP-NLWYS---VVPKTK-KC--------LEDIDKFIKENHF 679 (1195)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHcCCC-C-cEEeecccCcc-ceEEE---Eeccch-hH--------HHHHHHHHHhccc
Confidence 46789999999985 56788888754 2 22223333454 34222 222111 10 01122222 22
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
+.++||||+||++|+.+|..|.+. +..+++|||||++++|..+
T Consensus 680 ~esgIIYC~SRke~E~LAe~L~~~-------------------------------------Gika~~YHAGLs~eeR~~v 722 (1195)
T PLN03137 680 DECGIIYCLSRMDCEKVAERLQEF-------------------------------------GHKAAFYHGSMDPAQRAFV 722 (1195)
T ss_pred CCCceeEeCchhHHHHHHHHHHHC-------------------------------------CCCeeeeeCCCCHHHHHHH
Confidence 467999999999999999988643 2348999999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
++.|++|+++|||||++++||||+|++++||+ |+.+. +..+|+||+|||||.| ..|.|+++++..+...+.
T Consensus 723 qe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH----ydlPk---SiEsYyQriGRAGRDG--~~g~cILlys~~D~~~~~ 793 (1195)
T PLN03137 723 QKQWSKDEINIICATVAFGMGINKPDVRFVIH----HSLPK---SIEGYHQECGRAGRDG--QRSSCVLYYSYSDYIRVK 793 (1195)
T ss_pred HHHHhcCCCcEEEEechhhcCCCccCCcEEEE----cCCCC---CHHHHHhhhcccCCCC--CCceEEEEecHHHHHHHH
Confidence 99999999999999999999999999999997 66443 5567999999999999 679999999888877777
Q ss_pred HHhcC
Q 043190 241 RLLTS 245 (1492)
Q Consensus 241 ~~~~~ 245 (1492)
.++..
T Consensus 794 ~lI~~ 798 (1195)
T PLN03137 794 HMISQ 798 (1195)
T ss_pred HHHhc
Confidence 66644
No 146
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.80 E-value=8.4e-19 Score=215.47 Aligned_cols=182 Identities=24% Similarity=0.336 Sum_probs=132.4
Q ss_pred CcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 6 RMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 6 ~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
+++|+++||||+++ .+++.++++.. ...++ ..+..|| .+.. .+..... . .+.+ +...+.+ ..+++.
T Consensus 161 ~~~~~l~lTAT~~~~~~~di~~~l~l~-~~~~~-~~s~~r~-nl~~---~v~~~~~-~---~~~~-l~~~l~~-~~~~~~ 228 (470)
T TIGR00614 161 PNVPIMALTATASPSVREDILRQLNLK-NPQIF-CTSFDRP-NLYY---EVRRKTP-K---ILED-LLRFIRK-EFKGKS 228 (470)
T ss_pred CCCceEEEecCCCHHHHHHHHHHcCCC-CCcEE-eCCCCCC-CcEE---EEEeCCc-c---HHHH-HHHHHHH-hcCCCc
Confidence 46899999999987 46888888765 22222 2222333 2321 1211110 1 1111 1111111 134667
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+||||+|+++|+.++..|.+. ...++.+||||++++|..+++.
T Consensus 229 ~IIF~~s~~~~e~la~~L~~~-------------------------------------g~~~~~~H~~l~~~eR~~i~~~ 271 (470)
T TIGR00614 229 GIIYCPSRKKSEQVTASLQNL-------------------------------------GIAAGAYHAGLEISARDDVHHK 271 (470)
T ss_pred eEEEECcHHHHHHHHHHHHhc-------------------------------------CCCeeEeeCCCCHHHHHHHHHH
Confidence 799999999999999888643 2248899999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHHHh
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLL 243 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~ 243 (1492)
|++|.++|||||+++++|||+|++++||+ |+++. +..+|+||+|||||.| ..|.|+++++..+...+..++
T Consensus 272 F~~g~~~vLVaT~~~~~GID~p~V~~VI~----~~~P~---s~~~y~Qr~GRaGR~G--~~~~~~~~~~~~d~~~~~~~~ 342 (470)
T TIGR00614 272 FQRDEIQVVVATVAFGMGINKPDVRFVIH----YSLPK---SMESYYQESGRAGRDG--LPSECHLFYAPADINRLRRLL 342 (470)
T ss_pred HHcCCCcEEEEechhhccCCcccceEEEE----eCCCC---CHHHHHhhhcCcCCCC--CCceEEEEechhHHHHHHHHH
Confidence 99999999999999999999999999997 55432 5567999999999999 679999999998887777765
Q ss_pred cC
Q 043190 244 TS 245 (1492)
Q Consensus 244 ~~ 245 (1492)
..
T Consensus 343 ~~ 344 (470)
T TIGR00614 343 ME 344 (470)
T ss_pred hc
Confidence 44
No 147
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.79 E-value=4e-19 Score=217.70 Aligned_cols=178 Identities=20% Similarity=0.261 Sum_probs=129.3
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.+...|++++|||+++ ..+++.++..+ +..+.+......+-.+.+++..+... .+...+.. +... ....
T Consensus 177 l~~~~q~l~~SAT~~~~~~~l~~~~~~~-~~~i~~~~~~~~~~~i~~~~~~~~~~---~k~~~l~~-----l~~~-~~~~ 246 (456)
T PRK10590 177 LPAKRQNLLFSATFSDDIKALAEKLLHN-PLEIEVARRNTASEQVTQHVHFVDKK---RKRELLSQ-----MIGK-GNWQ 246 (456)
T ss_pred CCccCeEEEEeCCCcHHHHHHHHHHcCC-CeEEEEecccccccceeEEEEEcCHH---HHHHHHHH-----HHHc-CCCC
Confidence 4567899999999998 67888777655 33333322222233344444333221 11111111 1111 2356
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||+|+++++.+++.|.+. ...+..+||+|++++|..+++
T Consensus 247 ~~lVF~~t~~~~~~l~~~L~~~-------------------------------------g~~~~~lhg~~~~~~R~~~l~ 289 (456)
T PRK10590 247 QVLVFTRTKHGANHLAEQLNKD-------------------------------------GIRSAAIHGNKSQGARTRALA 289 (456)
T ss_pred cEEEEcCcHHHHHHHHHHHHHC-------------------------------------CCCEEEEECCCCHHHHHHHHH
Confidence 8999999999999999887542 223788999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
.|++|+++|||||+++++|||+|++++||+ |+... +..+|+||+|||||+| ..|.|+.++..++..
T Consensus 290 ~F~~g~~~iLVaTdv~~rGiDip~v~~VI~----~~~P~---~~~~yvqR~GRaGR~g--~~G~ai~l~~~~d~~ 355 (456)
T PRK10590 290 DFKSGDIRVLVATDIAARGLDIEELPHVVN----YELPN---VPEDYVHRIGRTGRAA--ATGEALSLVCVDEHK 355 (456)
T ss_pred HHHcCCCcEEEEccHHhcCCCcccCCEEEE----eCCCC---CHHHhhhhccccccCC--CCeeEEEEecHHHHH
Confidence 999999999999999999999999999997 66432 5567999999999999 679999988776644
No 148
>PTZ00424 helicase 45; Provisional
Probab=99.79 E-value=6.4e-19 Score=214.72 Aligned_cols=183 Identities=22% Similarity=0.336 Sum_probs=126.3
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.++++|+|++|||+|+ ..++....... +..+...........+.+.+..+... ..+...+. .+.+. ....
T Consensus 198 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~-----~~~~~-~~~~ 268 (401)
T PTZ00424 198 LPPDVQVALFSATMPNEILELTTKFMRD-PKRILVKKDELTLEGIRQFYVAVEKE--EWKFDTLC-----DLYET-LTIT 268 (401)
T ss_pred CCCCcEEEEEEecCCHHHHHHHHHHcCC-CEEEEeCCCCcccCCceEEEEecChH--HHHHHHHH-----HHHHh-cCCC
Confidence 4578999999999998 33333332222 22222111122222233333332211 11111111 11111 2356
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||+|++.++.+++.+.+. ..++++|||+|++++|..+++
T Consensus 269 ~~ivF~~t~~~~~~l~~~l~~~-------------------------------------~~~~~~~h~~~~~~~R~~i~~ 311 (401)
T PTZ00424 269 QAIIYCNTRRKVDYLTKKMHER-------------------------------------DFTVSCMHGDMDQKDRDLIMR 311 (401)
T ss_pred eEEEEecCcHHHHHHHHHHHHC-------------------------------------CCcEEEEeCCCCHHHHHHHHH
Confidence 8999999999999988877542 235899999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
.|++|+++|||||+++++|||+|++++||+ |++. .+..+|+||+|||||.| ..|.|++++++++...+.+
T Consensus 312 ~f~~g~~~vLvaT~~l~~GiDip~v~~VI~----~~~p---~s~~~y~qr~GRagR~g--~~G~~i~l~~~~~~~~~~~ 381 (401)
T PTZ00424 312 EFRSGSTRVLITTDLLARGIDVQQVSLVIN----YDLP---ASPENYIHRIGRSGRFG--RKGVAINFVTPDDIEQLKE 381 (401)
T ss_pred HHHcCCCCEEEEcccccCCcCcccCCEEEE----ECCC---CCHHHEeecccccccCC--CCceEEEEEcHHHHHHHHH
Confidence 999999999999999999999999999996 5543 36677999999999998 6799999998887665543
No 149
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=1.3e-18 Score=198.94 Aligned_cols=314 Identities=18% Similarity=0.214 Sum_probs=226.0
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHH-HH-hcCC
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVD-SL-RQGH 82 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 82 (1492)
.+++++|..|||+ |++.|+.|++..+ .|....|+.|++..|...+-.++.. ....+.++ ++ ...+
T Consensus 498 RrdlKliVtSATm-~a~kf~nfFgn~p-----~f~IpGRTyPV~~~~~k~p~eDYVe-------aavkq~v~Ihl~~~~G 564 (1042)
T KOG0924|consen 498 RRDLKLIVTSATM-DAQKFSNFFGNCP-----QFTIPGRTYPVEIMYTKTPVEDYVE-------AAVKQAVQIHLSGPPG 564 (1042)
T ss_pred hccceEEEeeccc-cHHHHHHHhCCCc-----eeeecCCccceEEEeccCchHHHHH-------HHHhhheEeeccCCCC
Confidence 4589999999999 9999999999543 4677899999977665443322211 11111111 12 2347
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
.+|||.+.+.+++-+...|.+.+....... .. ...|-..++.|+.+.+..|++
T Consensus 565 dilIfmtGqediE~t~~~i~~~l~ql~~~~---------------------~~------~L~vlpiYSQLp~dlQ~kiFq 617 (1042)
T KOG0924|consen 565 DILIFMTGQEDIECTCDIIKEKLEQLDSAP---------------------TT------DLAVLPIYSQLPADLQAKIFQ 617 (1042)
T ss_pred CEEEecCCCcchhHHHHHHHHHHHhhhcCC---------------------CC------ceEEEeehhhCchhhhhhhcc
Confidence 899999999999999998887665321110 00 112667899999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEec----cceecCCCC-------CcccCchhhhhhccCCCCCCccceEEEEe
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAG-------GWRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~-------~~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
.-..|..||||||++++..+.+|.+..||.. .+.|++..| +.+.....||+|||||.| .|.|+.++
T Consensus 618 ~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~---pG~cYRlY 694 (1042)
T KOG0924|consen 618 KAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG---PGTCYRLY 694 (1042)
T ss_pred cCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCC---Ccceeeeh
Confidence 9999999999999999999999999999983 466888776 345556778999999987 69999999
Q ss_pred CCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHH
Q 043190 232 SHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSL 311 (1492)
Q Consensus 232 ~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~ 311 (1492)
+.+. +...|+.. ++..-...+|...++-..++|. +|+.+| .+...|
T Consensus 695 Te~a--y~~eml~s--tvPEIqRTNl~nvVLlLkslgV----~dll~F--------dFmD~P------------------ 740 (1042)
T KOG0924|consen 695 TEDA--YKNEMLPS--TVPEIQRTNLSNVVLLLKSLGV----DDLLKF--------DFMDPP------------------ 740 (1042)
T ss_pred hhhH--HHhhcccC--CCchhhhcchhhHHHHHHhcCh----hhhhCC--------CcCCCC------------------
Confidence 7532 22233333 3334445677777766666663 333332 111111
Q ss_pred HHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccch
Q 043190 312 KQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRD 391 (1492)
Q Consensus 312 ~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~ 391 (1492)
..+.+.+++..|.-.|+|... -.+|++|+.|+.|+++|...+++.-... ..+..++|.++|+.. ...+..|+
T Consensus 741 -ped~~~~sly~Lw~LGAl~~~-----g~LT~lG~~MvefpLDP~lsKmll~a~~-~Gc~dEilsIvSmLS-vp~VF~rp 812 (1042)
T KOG0924|consen 741 -PEDNLLNSLYQLWTLGALDNT-----GQLTPLGRKMVEFPLDPPLSKMLLMAAR-MGCSDEILSIVSMLS-VPAVFYRP 812 (1042)
T ss_pred -HHHHHHHHHHHHHHhhccccC-----CccchhhHHhhhCCCCchHHHHHHHHhc-cCcHHHHHHHHHHhc-ccceeecc
Confidence 246788999999999999642 3799999999999999999999987543 346678888888765 45778898
Q ss_pred hHHHHHHHHHhc
Q 043190 392 EEQNELETLVQT 403 (1492)
Q Consensus 392 ~e~~~l~~l~~~ 403 (1492)
.|+++-..+...
T Consensus 813 ker~eead~ar~ 824 (1042)
T KOG0924|consen 813 KEREEEADAARE 824 (1042)
T ss_pred ccchhhhhhHHh
Confidence 888887777665
No 150
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.79 E-value=3.5e-19 Score=186.76 Aligned_cols=177 Identities=24% Similarity=0.292 Sum_probs=128.5
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCC--CCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNP--EMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~--~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
.|+..|++++|||.|. .+..|..... |-.+ ..-.+..+.-+.++|-.+.+.. +...++.+... -+-
T Consensus 255 lP~~rQillySATFP~--tVk~Fm~~~l~kPy~I-NLM~eLtl~GvtQyYafV~e~q---KvhCLntLfsk------LqI 322 (459)
T KOG0326|consen 255 LPKERQILLYSATFPL--TVKGFMDRHLKKPYEI-NLMEELTLKGVTQYYAFVEERQ---KVHCLNTLFSK------LQI 322 (459)
T ss_pred CCccceeeEEecccch--hHHHHHHHhccCccee-ehhhhhhhcchhhheeeechhh---hhhhHHHHHHH------hcc
Confidence 5788999999999998 3333433221 1111 1222344455555555554332 22222222211 134
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
.|++|||||-+.+|.+|+++.+. ++.+-|.||.|.+++|.+|.
T Consensus 323 NQsIIFCNS~~rVELLAkKITel-------------------------------------GyscyyiHakM~Q~hRNrVF 365 (459)
T KOG0326|consen 323 NQSIIFCNSTNRVELLAKKITEL-------------------------------------GYSCYYIHAKMAQEHRNRVF 365 (459)
T ss_pred cceEEEeccchHhHHHHHHHHhc-------------------------------------cchhhHHHHHHHHhhhhhhh
Confidence 68999999999999999999765 33366789999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
..|++|..+.||||+.+.||||++|++|||+ ||-+. ...+|+||+||+||.| .-|.||-+.+-++...
T Consensus 366 HdFr~G~crnLVctDL~TRGIDiqavNvVIN----FDfpk---~aEtYLHRIGRsGRFG--hlGlAInLityedrf~ 433 (459)
T KOG0326|consen 366 HDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN----FDFPK---NAETYLHRIGRSGRFG--HLGLAINLITYEDRFN 433 (459)
T ss_pred hhhhccccceeeehhhhhcccccceeeEEEe----cCCCC---CHHHHHHHccCCccCC--CcceEEEEEehhhhhh
Confidence 9999999999999999999999999999998 55333 5567999999999999 6799998887665433
No 151
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.79 E-value=7.7e-19 Score=215.65 Aligned_cols=181 Identities=23% Similarity=0.336 Sum_probs=131.9
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCc--ccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSY--RPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR 79 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1492)
..+.+.|.++||||+|+ ..+++.-+..+ |..+.+-.... -+-.+.+.++.+.... .+...+..++ +. .
T Consensus 201 ~~p~~~qtllfSAT~~~~i~~l~~~~l~~-p~~i~v~~~~~~~~~~~i~q~~~~v~~~~--~k~~~L~~ll-----~~-~ 271 (513)
T COG0513 201 ALPPDRQTLLFSATMPDDIRELARRYLND-PVEIEVSVEKLERTLKKIKQFYLEVESEE--EKLELLLKLL-----KD-E 271 (513)
T ss_pred hCCcccEEEEEecCCCHHHHHHHHHHccC-CcEEEEccccccccccCceEEEEEeCCHH--HHHHHHHHHH-----hc-C
Confidence 45668999999999998 44444444443 33333221222 3445666666665432 2222222221 11 2
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
...++||||+|++.|+.++..|... ++.++..||+|++++|..
T Consensus 272 ~~~~~IVF~~tk~~~~~l~~~l~~~-------------------------------------g~~~~~lhG~l~q~~R~~ 314 (513)
T COG0513 272 DEGRVIVFVRTKRLVEELAESLRKR-------------------------------------GFKVAALHGDLPQEERDR 314 (513)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHC-------------------------------------CCeEEEecCCCCHHHHHH
Confidence 3447999999999999998877653 233889999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc-cHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD-KLAY 238 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~-~~~~ 238 (1492)
+.+.|++|..+|||||+++|||+|+|.+++||+ ||.+ .+..+|+||+||+||+| ..|.++.++.+. +...
T Consensus 315 ~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin----yD~p---~~~e~yvHRiGRTgRaG--~~G~ai~fv~~~~e~~~ 385 (513)
T COG0513 315 ALEKFKDGELRVLVATDVAARGLDIPDVSHVIN----YDLP---LDPEDYVHRIGRTGRAG--RKGVAISFVTEEEEVKK 385 (513)
T ss_pred HHHHHHcCCCCEEEEechhhccCCccccceeEE----ccCC---CCHHHheeccCccccCC--CCCeEEEEeCcHHHHHH
Confidence 999999999999999999999999999999998 6654 25567999999999999 789999999875 4433
No 152
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.79 E-value=1.5e-18 Score=218.60 Aligned_cols=214 Identities=21% Similarity=0.312 Sum_probs=147.0
Q ss_pred CcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH--hcC
Q 043190 6 RMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL--RQG 81 (1492)
Q Consensus 6 ~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 81 (1492)
+++++++||||.++ ..++.++++... ....+.+..|| .+. +....... .. ..+...+ ..+
T Consensus 173 p~~~~v~lTAT~~~~~~~di~~~l~l~~--~~~~~~~~~r~-nl~--~~v~~~~~---~~--------~~l~~~l~~~~~ 236 (607)
T PRK11057 173 PTLPFMALTATADDTTRQDIVRLLGLND--PLIQISSFDRP-NIR--YTLVEKFK---PL--------DQLMRYVQEQRG 236 (607)
T ss_pred CCCcEEEEecCCChhHHHHHHHHhCCCC--eEEEECCCCCC-cce--eeeeeccc---hH--------HHHHHHHHhcCC
Confidence 46889999999987 356778876542 22333333454 221 11111111 11 1111111 356
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+++||||+||++|+.+++.|.+. ...++.+||||++++|..++
T Consensus 237 ~~~IIFc~tr~~~e~la~~L~~~-------------------------------------g~~v~~~Ha~l~~~~R~~i~ 279 (607)
T PRK11057 237 KSGIIYCNSRAKVEDTAARLQSR-------------------------------------GISAAAYHAGLDNDVRADVQ 279 (607)
T ss_pred CCEEEEECcHHHHHHHHHHHHhC-------------------------------------CCCEEEecCCCCHHHHHHHH
Confidence 89999999999999999988643 22488999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
+.|++|.++|||||+++++|||+|++++||+ |+.+ .+..+|+||+|||||.| ..|.|+++++..+...+.+
T Consensus 280 ~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~----~d~P---~s~~~y~Qr~GRaGR~G--~~~~~ill~~~~d~~~~~~ 350 (607)
T PRK11057 280 EAFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIP---RNIESYYQETGRAGRDG--LPAEAMLFYDPADMAWLRR 350 (607)
T ss_pred HHHHCCCCCEEEEechhhccCCCCCcCEEEE----eCCC---CCHHHHHHHhhhccCCC--CCceEEEEeCHHHHHHHHH
Confidence 9999999999999999999999999999997 6643 25667999999999999 5699999999988887777
Q ss_pred HhcCCCccc-cchhHhHHHHHHH--HHHhCcccCHHHHHHHhhhhh
Q 043190 242 LLTSQLPIE-SQFISSLKDNLNA--EVALGTVTNVKEACAWLGYTY 284 (1492)
Q Consensus 242 ~~~~~~~ie-s~l~~~l~~~l~~--ei~~~~i~~~~~~~~~~~~t~ 284 (1492)
++.....-. ..+. ...+++ ..+.+..+-..-.+++|...|
T Consensus 351 ~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~Crr~~~l~yf~e~~ 393 (607)
T PRK11057 351 CLEEKPAGQQQDIE---RHKLNAMGAFAEAQTCRRLVLLNYFGEGR 393 (607)
T ss_pred HHhcCCcHHHHHHH---HHHHHHHHHHHhcccCHHHHHHHHhCCCC
Confidence 765543211 1111 112222 223334444555666766654
No 153
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.78 E-value=5.8e-19 Score=205.55 Aligned_cols=181 Identities=21% Similarity=0.242 Sum_probs=128.5
Q ss_pred CC-CCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCC--cccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH
Q 043190 3 ST-QRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSS--YRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL 78 (1492)
Q Consensus 3 ~~-~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~--~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (1492)
.+ +.+.|.+++|||.|- .+.+|.-+..+ +..+.+...+ .....+.+.+..+. ...+...+..+ +.+..
T Consensus 266 ~i~~~~rQtlm~saTwp~~v~~lA~~fl~~-~~~i~ig~~~~~~a~~~i~qive~~~---~~~K~~~l~~l----L~~~~ 337 (519)
T KOG0331|consen 266 QIPRPDRQTLMFSATWPKEVRQLAEDFLNN-PIQINVGNKKELKANHNIRQIVEVCD---ETAKLRKLGKL----LEDIS 337 (519)
T ss_pred hcCCCcccEEEEeeeccHHHHHHHHHHhcC-ceEEEecchhhhhhhcchhhhhhhcC---HHHHHHHHHHH----HHHHh
Confidence 44 344589999999996 77777666544 4433332221 11112222222222 12222222111 11111
Q ss_pred -hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 79 -RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 79 -~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
..++++||||+|++.|++++..+... .+++...||+.++.+|
T Consensus 338 ~~~~~KvIIFc~tkr~~~~l~~~l~~~-------------------------------------~~~a~~iHGd~sQ~eR 380 (519)
T KOG0331|consen 338 SDSEGKVIIFCETKRTCDELARNLRRK-------------------------------------GWPAVAIHGDKSQSER 380 (519)
T ss_pred ccCCCcEEEEecchhhHHHHHHHHHhc-------------------------------------CcceeeecccccHHHH
Confidence 35678999999999999999988653 2347788999999999
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
..+.+.|++|+..|||||+++|||+|+|++++||+ ||++. +..+|+||+||+||+| ..|.|+.+.+..+..
T Consensus 381 ~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn----ydfP~---~vEdYVHRiGRTGRa~--~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 381 DWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN----YDFPN---NVEDYVHRIGRTGRAG--KKGTAITFFTSDNAK 451 (519)
T ss_pred HHHHHhcccCCcceEEEcccccccCCCccccEEEe----CCCCC---CHHHHHhhcCccccCC--CCceEEEEEeHHHHH
Confidence 99999999999999999999999999999999998 66543 5567999999999998 889999999876643
No 154
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.9e-18 Score=214.88 Aligned_cols=290 Identities=19% Similarity=0.213 Sum_probs=207.2
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH-hcCCc
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL-RQGHQ 83 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (1492)
+.++++|.||||+ |.++|+++++..+ ++..+.|..|++.+|......+.. +.+.+...+..++ ...+.
T Consensus 193 r~DLKiIimSATl-d~~rfs~~f~~ap-----vi~i~GR~fPVei~Y~~~~~~d~~-----l~~ai~~~v~~~~~~~~Gd 261 (845)
T COG1643 193 RDDLKLIIMSATL-DAERFSAYFGNAP-----VIEIEGRTYPVEIRYLPEAEADYI-----LLDAIVAAVDIHLREGSGS 261 (845)
T ss_pred CCCceEEEEeccc-CHHHHHHHcCCCC-----EEEecCCccceEEEecCCCCcchh-----HHHHHHHHHHHhccCCCCC
Confidence 3469999999999 9999999998543 577899999998887544332221 2222222333333 44689
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+|||.+...+.+.+++.|.+.... . ..-|...||.|+.+++.+|++-
T Consensus 262 ILvFLpG~~EI~~~~~~L~~~~l~-~--------------------------------~~~i~PLy~~L~~~eQ~rvF~p 308 (845)
T COG1643 262 ILVFLPGQREIERTAEWLEKAELG-D--------------------------------DLEILPLYGALSAEEQVRVFEP 308 (845)
T ss_pred EEEECCcHHHHHHHHHHHHhcccc-C--------------------------------CcEEeeccccCCHHHHHhhcCC
Confidence 999999999999999998761100 0 1127788999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEec----cceecCCCC-------CcccCchhhhhhccCCCCCCccceEEEEeC
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAG-------GWRDLGMLDIFGRAGRPQFDRSGEGIIITS 232 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~-------~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~ 232 (1492)
-..|+.||++||++++.++.+|.+++||.+ ...||+..| +.+..+..||+|||||-+ .|.||-+++
T Consensus 309 ~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~---pGicyRLys 385 (845)
T COG1643 309 APGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG---PGICYRLYS 385 (845)
T ss_pred CCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC---CceEEEecC
Confidence 999999999999999999999999999984 345888765 245567889999999986 799999998
Q ss_pred CccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHH
Q 043190 233 HDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLK 312 (1492)
Q Consensus 233 ~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~ 312 (1492)
.++ |..+...+.| .-+..+|...++..-..|.- .+|..+ |.+...
T Consensus 386 e~~---~~~~~~~t~P--EIlrtdLs~~vL~l~~~G~~--------------------~d~~~f----------~fld~P 430 (845)
T COG1643 386 EED---FLAFPEFTLP--EILRTDLSGLVLQLKSLGIG--------------------QDIAPF----------PFLDPP 430 (845)
T ss_pred HHH---HHhcccCCCh--hhhhcchHHHHHHHHhcCCC--------------------CCcccC----------ccCCCC
Confidence 643 3344333333 33444555555544444421 122221 122222
Q ss_pred HHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCc
Q 043190 313 QRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSS 382 (1492)
Q Consensus 313 ~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~ 382 (1492)
....+..|+..|...|+++.+ + .+|++|+.||.++++|.-+.++...-. ..+..+++.+.|...
T Consensus 431 ~~~~i~~A~~~L~~LGAld~~---g--~LT~lG~~ms~lpldprLA~mLl~a~~-~g~~~e~~~Ias~Ls 494 (845)
T COG1643 431 PEAAIQAALTLLQELGALDDS---G--KLTPLGKQMSLLPLDPRLARMLLTAPE-GGCLGEAATIASMLS 494 (845)
T ss_pred ChHHHHHHHHHHHHcCCcCCC---C--CCCHHHHHHHhCCCChHHHHHHHhccc-cCcHHHHHHHHHhhc
Confidence 246788999999999999743 3 499999999999999999999998655 334445555555443
No 155
>PTZ00110 helicase; Provisional
Probab=99.77 E-value=3.3e-18 Score=212.36 Aligned_cols=180 Identities=18% Similarity=0.210 Sum_probs=128.1
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCc-c-cccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhc
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSY-R-PIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~-r-pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1492)
..++.|++++|||+|. .+.+++++....+..+. ++... . ...+.+.+..+.... +...+. ..+......
T Consensus 305 ~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~-vg~~~l~~~~~i~q~~~~~~~~~---k~~~L~----~ll~~~~~~ 376 (545)
T PTZ00110 305 IRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVN-VGSLDLTACHNIKQEVFVVEEHE---KRGKLK----MLLQRIMRD 376 (545)
T ss_pred CCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEE-ECCCccccCCCeeEEEEEEechh---HHHHHH----HHHHHhccc
Confidence 4567899999999986 66777776543122121 11111 1 112333333333211 111111 122222236
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
+.++||||+|++.|+.+++.|... ...+..+||++++++|..+
T Consensus 377 ~~k~LIF~~t~~~a~~l~~~L~~~-------------------------------------g~~~~~ihg~~~~~eR~~i 419 (545)
T PTZ00110 377 GDKILIFVETKKGADFLTKELRLD-------------------------------------GWPALCIHGDKKQEERTWV 419 (545)
T ss_pred CCeEEEEecChHHHHHHHHHHHHc-------------------------------------CCcEEEEECCCcHHHHHHH
Confidence 789999999999999999887532 1236788999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
++.|++|.++|||||+++++|||+|++++||+ ||... +..+|+||+|||||.| ..|.|+.++++++..
T Consensus 420 l~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----~d~P~---s~~~yvqRiGRtGR~G--~~G~ai~~~~~~~~~ 487 (545)
T PTZ00110 420 LNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----FDFPN---QIEDYVHRIGRTGRAG--AKGASYTFLTPDKYR 487 (545)
T ss_pred HHHHhcCCCcEEEEcchhhcCCCcccCCEEEE----eCCCC---CHHHHHHHhcccccCC--CCceEEEEECcchHH
Confidence 99999999999999999999999999999997 66543 5567999999999999 779999999887654
No 156
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.76 E-value=5.5e-18 Score=206.57 Aligned_cols=114 Identities=25% Similarity=0.336 Sum_probs=99.0
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
...++||||+|++.|+.+++.|.+. ...++++||+|++++|..
T Consensus 254 ~~~~~lVF~~t~~~~~~l~~~L~~~-------------------------------------g~~v~~lhg~~~~~~R~~ 296 (423)
T PRK04837 254 WPDRAIIFANTKHRCEEIWGHLAAD-------------------------------------GHRVGLLTGDVAQKKRLR 296 (423)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhC-------------------------------------CCcEEEecCCCChhHHHH
Confidence 3578999999999999998887542 234899999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+++.|++|+++|||||+++++|||+|++++||+ ||++. +..+|+||+|||||.| ..|.|+.+..+.+...+
T Consensus 297 ~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~----~d~P~---s~~~yiqR~GR~gR~G--~~G~ai~~~~~~~~~~~ 367 (423)
T PRK04837 297 ILEEFTRGDLDILVATDVAARGLHIPAVTHVFN----YDLPD---DCEDYVHRIGRTGRAG--ASGHSISLACEEYALNL 367 (423)
T ss_pred HHHHHHcCCCcEEEEechhhcCCCccccCEEEE----eCCCC---chhheEeccccccCCC--CCeeEEEEeCHHHHHHH
Confidence 999999999999999999999999999999997 66532 5667999999999999 77999999987764433
No 157
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.76 E-value=5.6e-18 Score=211.78 Aligned_cols=180 Identities=19% Similarity=0.292 Sum_probs=129.0
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
..+...|+++||||+|+ ..++++.+... +..+.+.........+.+.++.+... .+...+. .+++. ...
T Consensus 176 ~lp~~~q~llfSAT~p~~i~~i~~~~l~~-~~~i~i~~~~~~~~~i~q~~~~v~~~---~k~~~L~-----~~L~~-~~~ 245 (629)
T PRK11634 176 QIPEGHQTALFSATMPEAIRRITRRFMKE-PQEVRIQSSVTTRPDISQSYWTVWGM---RKNEALV-----RFLEA-EDF 245 (629)
T ss_pred hCCCCCeEEEEEccCChhHHHHHHHHcCC-CeEEEccCccccCCceEEEEEEechh---hHHHHHH-----HHHHh-cCC
Confidence 45678899999999997 55566555444 33332222222222344444443321 1111111 11111 344
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
.++||||+|++.|+.++..|.+. .+.+..+||+|++.+|..++
T Consensus 246 ~~~IVF~~tk~~a~~l~~~L~~~-------------------------------------g~~~~~lhgd~~q~~R~~il 288 (629)
T PRK11634 246 DAAIIFVRTKNATLEVAEALERN-------------------------------------GYNSAALNGDMNQALREQTL 288 (629)
T ss_pred CCEEEEeccHHHHHHHHHHHHhC-------------------------------------CCCEEEeeCCCCHHHHHHHH
Confidence 68999999999999999888642 23478899999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
+.|++|+++|||||+++++|||+|.+++||+ ||.+ .+..+|+||+|||||+| ..|.|++++++.+...
T Consensus 289 ~~Fr~G~~~ILVATdv~arGIDip~V~~VI~----~d~P---~~~e~yvqRiGRtGRaG--r~G~ai~~v~~~e~~~ 356 (629)
T PRK11634 289 ERLKDGRLDILIATDVAARGLDVERISLVVN----YDIP---MDSESYVHRIGRTGRAG--RAGRALLFVENRERRL 356 (629)
T ss_pred HHHhCCCCCEEEEcchHhcCCCcccCCEEEE----eCCC---CCHHHHHHHhccccCCC--CcceEEEEechHHHHH
Confidence 9999999999999999999999999999997 6543 25567999999999999 6799999998765433
No 158
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.76 E-value=7.5e-18 Score=208.20 Aligned_cols=174 Identities=20% Similarity=0.273 Sum_probs=123.0
Q ss_pred cccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 7 MIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 7 ~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
..|++++|||+++ ..++++.+... +..+.....+...-.+.+++..+.... +...+ +..+. . ....++|
T Consensus 270 ~~q~i~~SAT~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~---k~~~l----~~ll~-~-~~~~~~I 339 (475)
T PRK01297 270 ERQTLLFSATFTDDVMNLAKQWTTD-PAIVEIEPENVASDTVEQHVYAVAGSD---KYKLL----YNLVT-Q-NPWERVM 339 (475)
T ss_pred CceEEEEEeecCHHHHHHHHHhccC-CEEEEeccCcCCCCcccEEEEEecchh---HHHHH----HHHHH-h-cCCCeEE
Confidence 5699999999875 56666655443 221111111222222344444433221 11111 11111 1 2346899
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|||+++++++.+++.|.+. ...++.+||+|++++|..+++.|+
T Consensus 340 VF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~~~g~~~~~~R~~~~~~Fr 382 (475)
T PRK01297 340 VFANRKDEVRRIEERLVKD-------------------------------------GINAAQLSGDVPQHKRIKTLEGFR 382 (475)
T ss_pred EEeCCHHHHHHHHHHHHHc-------------------------------------CCCEEEEECCCCHHHHHHHHHHHh
Confidence 9999999999988777432 223788999999999999999999
Q ss_pred CCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 166 EGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
+|+++|||||++|++|||+|++++||+ |+.. .+..+|+||+|||||.| ..|.++++.+.++.
T Consensus 383 ~G~~~vLvaT~~l~~GIDi~~v~~VI~----~~~P---~s~~~y~Qr~GRaGR~g--~~g~~i~~~~~~d~ 444 (475)
T PRK01297 383 EGKIRVLVATDVAGRGIHIDGISHVIN----FTLP---EDPDDYVHRIGRTGRAG--ASGVSISFAGEDDA 444 (475)
T ss_pred CCCCcEEEEccccccCCcccCCCEEEE----eCCC---CCHHHHHHhhCccCCCC--CCceEEEEecHHHH
Confidence 999999999999999999999999997 5432 25667999999999999 56999999987754
No 159
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.76 E-value=4.1e-18 Score=212.13 Aligned_cols=173 Identities=23% Similarity=0.269 Sum_probs=122.2
Q ss_pred cccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH--hcCCc
Q 043190 7 MIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL--RQGHQ 83 (1492)
Q Consensus 7 ~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 83 (1492)
..|+++||||+++ ..+++...... +..+..-........+.+.++... ...+... +...+ ..+.+
T Consensus 192 ~~q~ll~SATl~~~v~~l~~~~l~~-p~~i~v~~~~~~~~~i~q~~~~~~---~~~k~~~--------L~~ll~~~~~~k 259 (572)
T PRK04537 192 TRQTLLFSATLSHRVLELAYEHMNE-PEKLVVETETITAARVRQRIYFPA---DEEKQTL--------LLGLLSRSEGAR 259 (572)
T ss_pred CceEEEEeCCccHHHHHHHHHHhcC-CcEEEeccccccccceeEEEEecC---HHHHHHH--------HHHHHhcccCCc
Confidence 6799999999987 33433332222 222222222222223333333221 1111111 11122 35679
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+||||+|++.|+.+++.|.+. ...+++|||+|++.+|..+++.
T Consensus 260 ~LVF~nt~~~ae~l~~~L~~~-------------------------------------g~~v~~lhg~l~~~eR~~il~~ 302 (572)
T PRK04537 260 TMVFVNTKAFVERVARTLERH-------------------------------------GYRVGVLSGDVPQKKRESLLNR 302 (572)
T ss_pred EEEEeCCHHHHHHHHHHHHHc-------------------------------------CCCEEEEeCCCCHHHHHHHHHH
Confidence 999999999999999888643 2248999999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
|++|+++|||||+++++|||+|++++||+ ||.. ++..+|+||+|||||.| ..|.||.++.+.+..
T Consensus 303 Fr~G~~~VLVaTdv~arGIDip~V~~VIn----yd~P---~s~~~yvqRiGRaGR~G--~~G~ai~~~~~~~~~ 367 (572)
T PRK04537 303 FQKGQLEILVATDVAARGLHIDGVKYVYN----YDLP---FDAEDYVHRIGRTARLG--EEGDAISFACERYAM 367 (572)
T ss_pred HHcCCCeEEEEehhhhcCCCccCCCEEEE----cCCC---CCHHHHhhhhcccccCC--CCceEEEEecHHHHH
Confidence 99999999999999999999999999997 5532 35567999999999999 679999998776543
No 160
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.76 E-value=1.9e-17 Score=205.20 Aligned_cols=250 Identities=15% Similarity=0.073 Sum_probs=156.9
Q ss_pred ccEEEEcccCC-ChHHHHHhcCCCCCCceEeecCCccc-ccceEEEEEeeCC--chhHHHHHhhHHHHHHHHHHH-hcCC
Q 043190 8 IRIVGLSATLP-NYLEVAQFLRVNPEMGLFFFDSSYRP-IPLAQQYIGISEP--NFAARNELLSEICYKKVVDSL-RQGH 82 (1492)
Q Consensus 8 ~riv~lSATl~-n~~~~a~~l~~~~~~~~~~~~~~~rp-v~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~ 82 (1492)
.|+++||||+| +.+.+++|++.. . . +....++ .|++++|+..... ........-.......+.... ..++
T Consensus 322 rq~ILmSATl~~dv~~l~~~~~~p--~-~--I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g 396 (675)
T PHA02653 322 RSLFLMTATLEDDRDRIKEFFPNP--A-F--VHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGS 396 (675)
T ss_pred CEEEEEccCCcHhHHHHHHHhcCC--c-E--EEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCC
Confidence 48999999998 477888888632 1 2 2234453 6787776543211 000000000011111222221 2457
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||+++++|+.+++.|.+... ...+...||+|++. +.+.+
T Consensus 397 ~iLVFlpg~~ei~~l~~~L~~~~~-----------------------------------~~~v~~LHG~Lsq~--eq~l~ 439 (675)
T PHA02653 397 SGIVFVASVSQCEEYKKYLEKRLP-----------------------------------IYDFYIIHGKVPNI--DEILE 439 (675)
T ss_pred cEEEEECcHHHHHHHHHHHHhhcC-----------------------------------CceEEeccCCcCHH--HHHHH
Confidence 899999999999999988865310 12377889999975 34555
Q ss_pred HH-hCCCccEEEeccccccccCCCcEEEEEeccceecCC-----CCCcccCchhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 163 LF-SEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPK-----AGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 163 ~f-~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~-----~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
.| ++|+.+|||||+++|+|||+|++++||+....+.|. ....+..++.||+|||||.+ .|.|+.+++.++.
T Consensus 440 ~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~---~G~c~rLyt~~~~ 516 (675)
T PHA02653 440 KVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS---PGTYVYFYDLDLL 516 (675)
T ss_pred HHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCC---CCeEEEEECHHHh
Confidence 65 799999999999999999999999999865333332 11235667999999999984 6999999987653
Q ss_pred HHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHH
Q 043190 237 AYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRAL 316 (1492)
Q Consensus 237 ~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~ 316 (1492)
. |+...-.+.|...++..-+.|. ...++ .-+++. -.+.
T Consensus 517 ~----------pI~ri~~~~L~~~vL~lk~~g~-~~~~~--------------------~~ldpP-----------~~~~ 554 (675)
T PHA02653 517 K----------PIKRIDSEFLHNYILYAKYFNL-TLPED--------------------LFVIPS-----------NLDR 554 (675)
T ss_pred H----------HHHHHhHHHHHHHHHHHHHcCC-CCccc--------------------ccCCCC-----------CHHH
Confidence 2 2222222334555544444442 11110 001111 1467
Q ss_pred HHHHHHHHHHhccccccccCCceEeCCC--cchhhhc
Q 043190 317 VTDAARALDKAKMMRFDEKSGNFYCTEL--GRIASHF 351 (1492)
Q Consensus 317 ~~~~l~~L~~~~~i~~~~~~~~~~~t~~--G~~~s~~ 351 (1492)
+..|++.|...|+.+ + .+|.+ |+-+|..
T Consensus 555 l~~A~~~L~~lga~~-----~--~l~~l~~~~~~~~~ 584 (675)
T PHA02653 555 LRKTEEYIDSFNISI-----E--KWYEILSNYYVNML 584 (675)
T ss_pred HHHHHHHHHHcCCCc-----h--hhhhhhccccHHHH
Confidence 889999999999763 1 58888 8766554
No 161
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.75 E-value=8.3e-18 Score=206.17 Aligned_cols=179 Identities=22% Similarity=0.283 Sum_probs=128.5
Q ss_pred CCCcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccc-cceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH--
Q 043190 4 TQRMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPI-PLAQQYIGISEPNFAARNELLSEICYKKVVDSL-- 78 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 78 (1492)
++...|+++||||++. ..+++.++... +..+. .....+.. .+.+.+.... ....+... +...+
T Consensus 175 ~~~~~q~~~~SAT~~~~~~~~~~~~~~~~-~~~i~-~~~~~~~~~~i~~~~~~~~--~~~~k~~~--------l~~l~~~ 242 (434)
T PRK11192 175 TRWRKQTLLFSATLEGDAVQDFAERLLND-PVEVE-AEPSRRERKKIHQWYYRAD--DLEHKTAL--------LCHLLKQ 242 (434)
T ss_pred CccccEEEEEEeecCHHHHHHHHHHHccC-CEEEE-ecCCcccccCceEEEEEeC--CHHHHHHH--------HHHHHhc
Confidence 3456799999999974 77888888755 22221 22222211 2323332221 11112111 12222
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
....++||||+|+..++.++..|.+. ...++++||+|++.+|.
T Consensus 243 ~~~~~~lVF~~s~~~~~~l~~~L~~~-------------------------------------~~~~~~l~g~~~~~~R~ 285 (434)
T PRK11192 243 PEVTRSIVFVRTRERVHELAGWLRKA-------------------------------------GINCCYLEGEMVQAKRN 285 (434)
T ss_pred CCCCeEEEEeCChHHHHHHHHHHHhC-------------------------------------CCCEEEecCCCCHHHHH
Confidence 24678999999999999999888642 12388999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
.+++.|++|.++|||||+++++|||+|++++||+ ||.. .+...|+||+|||||.| ..|.|+.+++..+...
T Consensus 286 ~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~----~d~p---~s~~~yiqr~GR~gR~g--~~g~ai~l~~~~d~~~ 356 (434)
T PRK11192 286 EAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN----FDMP---RSADTYLHRIGRTGRAG--RKGTAISLVEAHDHLL 356 (434)
T ss_pred HHHHHHhCCCCcEEEEccccccCccCCCCCEEEE----ECCC---CCHHHHhhcccccccCC--CCceEEEEecHHHHHH
Confidence 9999999999999999999999999999999997 6543 35567999999999999 6799999998766544
Q ss_pred HH
Q 043190 239 YL 240 (1492)
Q Consensus 239 ~~ 240 (1492)
+.
T Consensus 357 ~~ 358 (434)
T PRK11192 357 LG 358 (434)
T ss_pred HH
Confidence 33
No 162
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.75 E-value=3.6e-16 Score=204.88 Aligned_cols=360 Identities=19% Similarity=0.230 Sum_probs=209.0
Q ss_pred CCCCCCHHHHHHHHh---hhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 685 NFSHFNPIQTQIFHI---LYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~---~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
||+ ++|.|.+.+.. .+.+++++++.||||+|||++|++|++.... .+.+++|.+||++|..|++.+-...+.+.
T Consensus 243 ~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~ 319 (850)
T TIGR01407 243 GLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--TEKPVVISTNTKVLQSQLLEKDIPLLNEI 319 (850)
T ss_pred CCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 666 89999985553 3457889999999999999999999988765 36799999999999999876422234443
Q ss_pred cC--CEEEEEcC----------------------------------------CCCc----------------c-------
Q 043190 762 LG--KEMVEMTG----------------------------------------DYTP----------------D------- 776 (1492)
Q Consensus 762 ~g--~~v~~~~g----------------------------------------~~~~----------------~------- 776 (1492)
+| +++..+.| |.+. +
T Consensus 320 ~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~~~~~~~i~~~~~l~~~c 399 (850)
T TIGR01407 320 LNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGNKMFFAQVRHDGNLSKKD 399 (850)
T ss_pred cCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcchhhHHHhhcCCCCCCCC
Confidence 33 44444333 2110 0
Q ss_pred -----------hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC----CCccHH-----HHHHH---
Q 043190 777 -----------LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA----ERGPIL-----EVIVS--- 833 (1492)
Q Consensus 777 -----------~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~----~~g~~~-----~~i~~--- 833 (1492)
.+....++|+|+...-+..-+.. ....+....++||||||.+.+ ..+..+ ..++.
T Consensus 400 ~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~--~~~ilp~~~~lIiDEAH~L~d~a~~~~~~~ls~~~~~~~l~~l~ 477 (850)
T TIGR01407 400 LFYEVDFYNRAQKNAEQAQILITNHAYLITRLVD--NPELFPSFRDLIIDEAHHLPDIAENQLQEELDYADIKYQIDLIG 477 (850)
T ss_pred CCccccHHHHHHHHHhcCCEEEecHHHHHHHhhc--ccccCCCCCEEEEECcchHHHHHHHHhcceeCHHHHHHHHHHHH
Confidence 00011479999988755332221 123456678999999997631 011000 00000
Q ss_pred --------------------------------------------------------------HHHHh----------h--
Q 043190 834 --------------------------------------------------------------RMRYI----------S-- 839 (1492)
Q Consensus 834 --------------------------------------------------------------~l~~~----------~-- 839 (1492)
.+..+ .
T Consensus 478 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~ 557 (850)
T TIGR01407 478 KGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFDLALKDDFKNIEQSLKE 557 (850)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00000 0
Q ss_pred --------h------c------------------cCCceEEEEEcCCCC---ChHHHHHHhcCCcceeEec-CCCcc-cc
Q 043190 840 --------S------Q------------------TERAVRFIGLSTALA---NAGDLADWLGVGEIGLFNF-KPSVR-PV 882 (1492)
Q Consensus 840 --------~------~------------------~~~~~~ii~lSATl~---~~~~~~~~l~~~~~~~~~~-~~~~r-~~ 882 (1492)
. . ......+|++|||+. +.+-+.+.+|........+ .+++. ..
T Consensus 558 ~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~~~~~~~~~~spf~~~~ 637 (850)
T TIGR01407 558 GHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLTDVHFNTIEPTPLNYAE 637 (850)
T ss_pred CCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCCccccceecCCCCCHHH
Confidence 0 0 011246899999997 5677888898865332222 11111 11
Q ss_pred CcEEEEe-ccCCccccccccccChhHHHHHhh--cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHH
Q 043190 883 PLEVHIQ-GYPGKFYCPRMNSMNKPAYAAICT--HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQ 959 (1492)
Q Consensus 883 ~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~ 959 (1492)
...+.+. ..+....... ......+...+.. ...++++|||++|.+..+.++..|.....
T Consensus 638 ~~~l~v~~d~~~~~~~~~-~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~----------------- 699 (850)
T TIGR01407 638 NQRVLIPTDAPAIQNKSL-EEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPE----------------- 699 (850)
T ss_pred cCEEEecCCCCCCCCCCh-HHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcc-----------------
Confidence 1112111 1111100000 0001111111111 12457899999999999999887743211
Q ss_pred HHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcE---EEEecceeeeCc---
Q 043190 960 MVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHL---VIIKGTEYYDGK--- 1033 (1492)
Q Consensus 960 ~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~---~VI~~~~~~~~~--- 1033 (1492)
..+..++..+.. ..|..+++.|++|+..||+||+.+++|||+|+.. +||.+-++-.+.
T Consensus 700 ---------------~~~~~~l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~ 763 (850)
T TIGR01407 700 ---------------FEGYEVLAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPL 763 (850)
T ss_pred ---------------ccCceEEecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHH
Confidence 012223333333 5788999999999999999999999999999864 345444432221
Q ss_pred ------------cCccccC--C--HHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCc
Q 043190 1034 ------------TKRYVDF--P--ITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFP 1084 (1492)
Q Consensus 1034 ------------~~~~~~~--~--~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~p 1084 (1492)
...++++ | ...+.|.+||.-|.. ++.|..+++-..-....|.+.+-+..|
T Consensus 764 ~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~-~D~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 764 TKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRE-NDRGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred HHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccC-CceEEEEEEccccccchHHHHHHHhCC
Confidence 1123333 3 457899999999975 457877777555445556666555555
No 163
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.74 E-value=1.7e-17 Score=210.34 Aligned_cols=182 Identities=24% Similarity=0.351 Sum_probs=134.5
Q ss_pred cccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcE
Q 043190 7 MIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQA 84 (1492)
Q Consensus 7 ~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1492)
+.+++++|||.+. ..++.+|++.. +...+ +.+..|| .+...+ ..... +... +.+.+.. ..+.++
T Consensus 162 ~~~vi~lTAT~~~~~~~~i~~~l~~~-~~~~~-~~~~~r~-nl~~~v--~~~~~---~~~~----l~~~l~~--~~~~~~ 227 (591)
T TIGR01389 162 QVPRIALTATADAETRQDIRELLRLA-DANEF-ITSFDRP-NLRFSV--VKKNN---KQKF----LLDYLKK--HRGQSG 227 (591)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHcCCC-CCCeE-ecCCCCC-CcEEEE--EeCCC---HHHH----HHHHHHh--cCCCCE
Confidence 4569999999876 56799999865 22232 3344454 232221 12111 1111 1111111 236789
Q ss_pred EEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHH
Q 043190 85 MVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLF 164 (1492)
Q Consensus 85 lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f 164 (1492)
||||+||++|+.+++.|... ...++.|||||++++|..+++.|
T Consensus 228 IIf~~sr~~~e~la~~L~~~-------------------------------------g~~~~~~H~~l~~~~R~~i~~~F 270 (591)
T TIGR01389 228 IIYASSRKKVEELAERLESQ-------------------------------------GISALAYHAGLSNKVRAENQEDF 270 (591)
T ss_pred EEEECcHHHHHHHHHHHHhC-------------------------------------CCCEEEEECCCCHHHHHHHHHHH
Confidence 99999999999999888642 22478999999999999999999
Q ss_pred hCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHHHhc
Q 043190 165 SEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLLT 244 (1492)
Q Consensus 165 ~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~~ 244 (1492)
++|.++|||||+++++|||+|++++||+ |++.. +..+|+||+|||||.| ..|.|+++++..+...+..++.
T Consensus 271 ~~g~~~vlVaT~a~~~GID~p~v~~VI~----~~~p~---s~~~y~Q~~GRaGR~G--~~~~~il~~~~~d~~~~~~~i~ 341 (591)
T TIGR01389 271 LYDDVKVMVATNAFGMGIDKPNVRFVIH----YDMPG---NLESYYQEAGRAGRDG--LPAEAILLYSPADIALLKRRIE 341 (591)
T ss_pred HcCCCcEEEEechhhccCcCCCCCEEEE----cCCCC---CHHHHhhhhccccCCC--CCceEEEecCHHHHHHHHHHHh
Confidence 9999999999999999999999999996 66543 5567999999999999 6799999999998888887776
Q ss_pred CCCc
Q 043190 245 SQLP 248 (1492)
Q Consensus 245 ~~~~ 248 (1492)
...+
T Consensus 342 ~~~~ 345 (591)
T TIGR01389 342 QSEA 345 (591)
T ss_pred ccCC
Confidence 6554
No 164
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.74 E-value=2.5e-17 Score=196.09 Aligned_cols=93 Identities=39% Similarity=0.613 Sum_probs=83.9
Q ss_pred hHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhh
Q 043190 135 KDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFG 214 (1492)
Q Consensus 135 ~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~G 214 (1492)
..+.+++-+|||+|||||.+..|..||-+||+|.+.||+||.||+.|||+|.++||+-|.. -..+.+.|.||+|
T Consensus 955 ~~~id~lyRGiG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~gDs------LQL~plny~QmaG 1028 (1330)
T KOG0949|consen 955 FEFIDMLYRGIGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFAGDS------LQLDPLNYKQMAG 1028 (1330)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEeccc------cccCchhHHhhhc
Confidence 4577888999999999999999999999999999999999999999999999999996543 2356677999999
Q ss_pred ccCCCCCCccceEEEEeCC
Q 043190 215 RAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 215 RAGR~~~d~~G~~i~~~~~ 233 (1492)
||||.|||..|.++.+.-+
T Consensus 1029 RAGRRGFD~lGnV~FmgiP 1047 (1330)
T KOG0949|consen 1029 RAGRRGFDTLGNVVFMGIP 1047 (1330)
T ss_pred cccccccccccceEEEeCc
Confidence 9999999999999999654
No 165
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=7e-18 Score=187.87 Aligned_cols=198 Identities=19% Similarity=0.289 Sum_probs=146.3
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
.++++.|.++||||+.. .+|++..-..+ |-.+|+-.+..++..|.+.|+.+.+.....+...+..+ +... -.
T Consensus 354 lcpk~RQTmLFSATMteeVkdL~slSL~k-Pvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l----~~rt--f~ 426 (691)
T KOG0338|consen 354 LCPKNRQTMLFSATMTEEVKDLASLSLNK-PVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASL----ITRT--FQ 426 (691)
T ss_pred hccccccceeehhhhHHHHHHHHHhhcCC-CeEEEeCCccccchhhhHHHheeccccccccHHHHHHH----HHHh--cc
Confidence 46889999999999986 77777766555 55666544455666688888877654332222222111 1112 24
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
..++||+.|++.|.++--.+ .+++..+|-.||.|++++|..+.
T Consensus 427 ~~~ivFv~tKk~AHRl~Ill-------------------------------------GLlgl~agElHGsLtQ~QRlesL 469 (691)
T KOG0338|consen 427 DRTIVFVRTKKQAHRLRILL-------------------------------------GLLGLKAGELHGSLTQEQRLESL 469 (691)
T ss_pred cceEEEEehHHHHHHHHHHH-------------------------------------HHhhchhhhhcccccHHHHHHHH
Confidence 67999999999886553222 23444577789999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
+.|+++++.|||||++++||+|++.+.+||+ |+.+. +...|+||+||+.|+| +.|.+|.++..++...++.
T Consensus 470 ~kFk~~eidvLiaTDvAsRGLDI~gV~tVIN----y~mP~---t~e~Y~HRVGRTARAG--RaGrsVtlvgE~dRkllK~ 540 (691)
T KOG0338|consen 470 EKFKKEEIDVLIATDVASRGLDIEGVQTVIN----YAMPK---TIEHYLHRVGRTARAG--RAGRSVTLVGESDRKLLKE 540 (691)
T ss_pred HHHHhccCCEEEEechhhccCCccceeEEEe----ccCch---hHHHHHHHhhhhhhcc--cCcceEEEeccccHHHHHH
Confidence 9999999999999999999999999999998 54322 4456999999999999 7899999999988777777
Q ss_pred HhcCCCccccch
Q 043190 242 LLTSQLPIESQF 253 (1492)
Q Consensus 242 ~~~~~~~ies~l 253 (1492)
.+.+.....+.+
T Consensus 541 iik~~~~a~~kl 552 (691)
T KOG0338|consen 541 IIKSSTKAGSKL 552 (691)
T ss_pred HHhhhhhcccch
Confidence 666654444443
No 166
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.71 E-value=8.7e-17 Score=191.33 Aligned_cols=183 Identities=22% Similarity=0.341 Sum_probs=138.5
Q ss_pred cccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH-hcCCc
Q 043190 7 MIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL-RQGHQ 83 (1492)
Q Consensus 7 ~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 83 (1492)
++.+++|+||-+. .+|+.+-|+.. ..++| ..+-.|| +.++.+..... ...+.. .+.+.. ..+++
T Consensus 166 ~~p~~AlTATA~~~v~~DI~~~L~l~-~~~~~-~~sfdRp----Ni~~~v~~~~~-----~~~q~~--fi~~~~~~~~~~ 232 (590)
T COG0514 166 NPPVLALTATATPRVRDDIREQLGLQ-DANIF-RGSFDRP----NLALKVVEKGE-----PSDQLA--FLATVLPQLSKS 232 (590)
T ss_pred CCCEEEEeCCCChHHHHHHHHHhcCC-CcceE-EecCCCc----hhhhhhhhccc-----HHHHHH--HHHhhccccCCC
Confidence 6789999999876 78888888876 33343 4455566 22222221110 011111 112111 34567
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
.||||.||+.++.+|++|.+. +..++++||||+.++|..++++
T Consensus 233 GIIYc~sRk~~E~ia~~L~~~-------------------------------------g~~a~~YHaGl~~~eR~~~q~~ 275 (590)
T COG0514 233 GIIYCLTRKKVEELAEWLRKN-------------------------------------GISAGAYHAGLSNEERERVQQA 275 (590)
T ss_pred eEEEEeeHHhHHHHHHHHHHC-------------------------------------CCceEEecCCCCHHHHHHHHHH
Confidence 899999999999999999764 2238999999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHHHh
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLL 243 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~ 243 (1492)
|..+.++|+|||..+.||||-|+++.||+ ||.+. +..+|.|-+|||||.| ....|++++++.|......++
T Consensus 276 f~~~~~~iiVAT~AFGMGIdKpdVRfViH----~~lP~---s~EsYyQE~GRAGRDG--~~a~aill~~~~D~~~~~~~i 346 (590)
T COG0514 276 FLNDEIKVMVATNAFGMGIDKPDVRFVIH----YDLPG---SIESYYQETGRAGRDG--LPAEAILLYSPEDIRWQRYLI 346 (590)
T ss_pred HhcCCCcEEEEeccccCccCCCCceEEEE----ecCCC---CHHHHHHHHhhccCCC--CcceEEEeeccccHHHHHHHH
Confidence 99999999999999999999999999997 77543 6678999999999999 789999999999877666666
Q ss_pred cCCCc
Q 043190 244 TSQLP 248 (1492)
Q Consensus 244 ~~~~~ 248 (1492)
....|
T Consensus 347 ~~~~~ 351 (590)
T COG0514 347 EQSKP 351 (590)
T ss_pred Hhhcc
Confidence 66555
No 167
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=3.8e-17 Score=174.82 Aligned_cols=183 Identities=20% Similarity=0.241 Sum_probs=132.3
Q ss_pred CCCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCC--cc--cccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH
Q 043190 3 STQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSS--YR--PIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL 78 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~--~r--pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (1492)
..|...|..+||||+.+ .+.+-.+.....+..++-+. .- +-.|.+.|+.++.... +...+..+...-
T Consensus 180 ~lP~~RQtLlfSATitd--~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk-------daYLv~~Lr~~~ 250 (442)
T KOG0340|consen 180 CLPKPRQTLLFSATITD--TIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK-------DAYLVHLLRDFE 250 (442)
T ss_pred cCCCccceEEEEeehhh--HHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh-------HHHHHHHHhhhh
Confidence 34667899999999976 44455554422222222222 22 2235556665543321 111222222221
Q ss_pred -hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 79 -RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 79 -~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
++.+.++||+++.++|+.++..|... +..++..|+-|++.+|
T Consensus 251 ~~~~~simIFvnttr~cQ~l~~~l~~l-------------------------------------e~r~~~lHs~m~Q~eR 293 (442)
T KOG0340|consen 251 NKENGSIMIFVNTTRECQLLSMTLKNL-------------------------------------EVRVVSLHSQMPQKER 293 (442)
T ss_pred hccCceEEEEeehhHHHHHHHHHHhhh-------------------------------------ceeeeehhhcchHHHH
Confidence 24789999999999999888777543 3348888999999999
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
......||++.+++|+||++++||+|+|.+..||+...+-||+ +|+||+||+.|+| +.|.+|-++++.+.+
T Consensus 294 ~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~-------~yiHRvGRtARAG--R~G~aiSivt~rDv~ 364 (442)
T KOG0340|consen 294 LAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPK-------DYIHRVGRTARAG--RKGMAISIVTQRDVE 364 (442)
T ss_pred HHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHH-------HHHHhhcchhccc--CCcceEEEechhhHH
Confidence 9999999999999999999999999999999999966665555 4999999999999 889999999887766
Q ss_pred HHH
Q 043190 238 YYL 240 (1492)
Q Consensus 238 ~~~ 240 (1492)
.+.
T Consensus 365 l~~ 367 (442)
T KOG0340|consen 365 LLQ 367 (442)
T ss_pred HHH
Confidence 554
No 168
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.71 E-value=1.5e-15 Score=181.42 Aligned_cols=311 Identities=16% Similarity=0.180 Sum_probs=185.9
Q ss_pred CCCCCHHHHHHHHhhh----cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 686 FSHFNPIQTQIFHILY----HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~----~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
-..++++|..|+..+. ++.+.+++++.||+|||..+...|.+.++.+..+++|+++-+++|+.|.++.+...+ +.
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~-P~ 241 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFL-PF 241 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhC-CC
Confidence 3468999999998654 344579999999999999998888888877778999999999999999999887744 33
Q ss_pred cCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcc-cC--ccccCcccEEEEecccccCCCCccHHHHHHHHHHHh
Q 043190 762 LGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNW-HS--RNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYI 838 (1492)
Q Consensus 762 ~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~-~~--~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~ 838 (1492)
+..+..+.+.... ..++|.++|...+....... .. +.....+++|||||||+-. ...+..++..+-.
T Consensus 242 -~~~~n~i~~~~~~-----~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi---~~~~~~I~dYFdA- 311 (875)
T COG4096 242 -GTKMNKIEDKKGD-----TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI---YSEWSSILDYFDA- 311 (875)
T ss_pred -ccceeeeecccCC-----cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH---HhhhHHHHHHHHH-
Confidence 4444444432211 25799999999886666553 11 2234568999999999421 1112244443321
Q ss_pred hhccCCceEEEEEcCCCCChHHHH--HHh-cCCcceeEec--------CCCcccc--CcEEEEeccCC------------
Q 043190 839 SSQTERAVRFIGLSTALANAGDLA--DWL-GVGEIGLFNF--------KPSVRPV--PLEVHIQGYPG------------ 893 (1492)
Q Consensus 839 ~~~~~~~~~ii~lSATl~~~~~~~--~~l-~~~~~~~~~~--------~~~~r~~--~l~~~~~~~~~------------ 893 (1492)
..++++||+.+..+.. .++ |.+ ...+.. -..++.+ ++.....|..-
T Consensus 312 --------~~~gLTATP~~~~d~~T~~~F~g~P-t~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 312 --------ATQGLTATPKETIDRSTYGFFNGEP-TYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred --------HHHhhccCcccccccccccccCCCc-ceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 2356799986633332 344 222 111110 0112222 11111111110
Q ss_pred ------ccccccc--ccc-----Chh---HHHHHhhc----CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCC
Q 043190 894 ------KFYCPRM--NSM-----NKP---AYAAICTH----SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGM 953 (1492)
Q Consensus 894 ------~~~~~~~--~~~-----~~~---~~~~l~~~----~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~ 953 (1492)
..+.... ..+ ... .+...... ..-+++||||.+..+|+.+...+.+..+..
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~--------- 453 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEY--------- 453 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccc---------
Confidence 0000000 000 000 11111111 124689999999999999998886654321
Q ss_pred ChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHh-cCCceEEEeccccccccCCCCcEEEEecceeeeC
Q 043190 954 PEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFA-NNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDG 1032 (1492)
Q Consensus 954 ~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~-~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~ 1032 (1492)
-+.-+..+.+.- .+.+..+-+-+. +.-.+|.|+.+++.+|||+|.+..++- ..
T Consensus 454 --------------------~~~~a~~IT~d~-~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF-----~r 507 (875)
T COG4096 454 --------------------NGRYAMKITGDA-EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF-----DR 507 (875)
T ss_pred --------------------cCceEEEEeccc-hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeee-----hh
Confidence 012234444443 233333433333 344689999999999999999877663 22
Q ss_pred ccCccccCCHHHHHHhhcccCCCC
Q 043190 1033 KTKRYVDFPITDILQMMGRAGRPQ 1056 (1492)
Q Consensus 1033 ~~~~~~~~~~~~~~Qr~GRagR~g 1056 (1492)
+. .|...|.||+||+-|.-
T Consensus 508 ~V-----rSktkF~QMvGRGTRl~ 526 (875)
T COG4096 508 KV-----RSKTKFKQMVGRGTRLC 526 (875)
T ss_pred hh-----hhHHHHHHHhcCccccC
Confidence 21 17889999999999964
No 169
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.69 E-value=2.4e-16 Score=172.29 Aligned_cols=280 Identities=13% Similarity=0.189 Sum_probs=210.2
Q ss_pred cccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhcccceeecCCCCCChhHHHHHHHHHHhcCC
Q 043190 1183 YLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRL 1262 (1492)
Q Consensus 1183 ~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~l~r~ 1262 (1492)
++.+.|+.+|...+....+.+.+|+++|.+.||..+ . .+.|..-...|+++||+|-
T Consensus 226 gvh~vT~~~f~~~~~~SlTlDelLslfasskElt~~-------------~-----------pk~pk~~~ekll~dhlnr~ 281 (610)
T COG5407 226 GVHFVTMEMFYERIDGSLTLDELLSLFASSKELTRM-------------N-----------PKGPKCTLEKLLGDHLNRA 281 (610)
T ss_pred ceeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHh-------------C-----------CCCCchhHHHHHHHHHhHh
Confidence 467889999999998889999999999999997653 1 1233344556999999997
Q ss_pred CCCCcchHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCC
Q 043190 1263 DLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGIS 1342 (1492)
Q Consensus 1263 ~l~~~~l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~ 1342 (1492)
.-. ++. ..+|+.++.-|+.|+.+|++.++++..+.+.+.+.|||+|++..+-..+++|+|+...+.++.+.-+.|.
T Consensus 282 ~s~--~fn--~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp~~d~E~~~~~s~r~I~ 357 (610)
T COG5407 282 RSV--EFN--EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLPRSDVEYAQRVSLRLIE 357 (610)
T ss_pred hcc--cch--heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhcccchhHHHHHHhhhhhhh
Confidence 643 343 6789999999999999999999999999999999999999999887789999999999999999888899
Q ss_pred CHHHHhcCCHHHHhhhhCCc---hHHHHHHHhcCCCceEE---EEEEEeccC-C--CCCeEEEEEEEEecc---------
Q 043190 1343 TVQQLLDIPKENLQTVIGNF---PVSRLHQDLQRFPRIQV---KLRLQRRDI-D--GENSLTLNIRMDKMN--------- 1404 (1492)
Q Consensus 1343 s~~~l~~~~~~~~~~~l~~~---~~~~i~~~~~~~P~i~i---~~~~~~~~~-~--~~~~~~l~v~l~~~~--------- 1404 (1492)
++.++..+.+++....+++. +.+++..+++.+|++.+ .+-+.++.. . +...+.+++-+....
T Consensus 358 ~~~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~~~a~flv~~d~~it~~s~~~vslk~~~g~~~~pe~~ts~~ 437 (610)
T COG5407 358 GMKAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFLLQAPFLVFEDLFITEKSKERVSLKGYLGAIPGPEHRTSAL 437 (610)
T ss_pred hhhhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEEEecceeecccceecccceeeEEEEEEeccccCCccccccc
Confidence 99999999888888887653 57889999999999876 232222211 1 122233333332211
Q ss_pred -----------------------CCCCCCccccccCCCCccceEEEEEEeCCCCeEE----EEEEee-cCCcceEEEEec
Q 043190 1405 -----------------------SWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELY----ALKRIS-FSDRLNTHMELP 1456 (1492)
Q Consensus 1405 -----------------------~~~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~----~~~r~~-~~~~~~~~~~~p 1456 (1492)
........|||+||......||+.|.+.+++.++ +++.++ .......++++|
T Consensus 438 ~~~n~~e~~dfe~~~~~~~ai~~d~~~~pys~Ap~f~t~~~~~w~~~v~~~~Qt~~Iip~~Si~~v~K~~~d~Ri~~dv~ 517 (610)
T COG5407 438 NVYNQVEISDFEASVIETGAIKNDSSDSPYSEAPDFATRNDSEWAVRVAKCEQTVYIIPGGSIATVSKVTLDRRIQGDVA 517 (610)
T ss_pred ccccccChHHHhhhccCccccccCCCCCCcccCcccccccCcceEEEeeccccceEEeCCccccccchhhhhcccccccC
Confidence 0112224889999999999999999999988765 334443 111112445555
Q ss_pred CCCCCcceEEEEEEeCCCCCccEEEEEEEEEeccc
Q 043190 1457 SGITTFQGMKLVVVSDCYLGFEQEHSIEALVEQSV 1491 (1492)
Q Consensus 1457 ~~~~~~~~~~v~~~sd~y~G~D~~~~i~~~v~~~~ 1491 (1492)
.- .+...+.+.+++-.|+|.+...-|.|-+.+-+
T Consensus 518 pv-d~T~~~ql~~~ap~~vg~f~~~~ivm~t~d~~ 551 (610)
T COG5407 518 PV-DKTGGKQLIVHAPFMVGAFSVKWIVMLTVDNV 551 (610)
T ss_pred cc-ccccceeeeecCchhhccceeeeEEEEeechh
Confidence 32 35667789999999999999888888776544
No 170
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.68 E-value=9.9e-16 Score=194.05 Aligned_cols=328 Identities=14% Similarity=0.116 Sum_probs=173.5
Q ss_pred CCCHHHHHHHHhhhc---------CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 688 HFNPIQTQIFHILYH---------TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~---------~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
.++++|..++..+++ +.+..++..|||||||+.+...+...+...+..++|+++|+++|..|..+.|....
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 378899998887642 13589999999999999988777665554457899999999999999999887642
Q ss_pred hhccCCEEEEEcCCCCcch-h--ccCCCcEEEECchhhhHhhhcccCccccCc-ccEEEEecccccCCCCccHHHHHHHH
Q 043190 759 VSQLGKEMVEMTGDYTPDL-M--ALLSADIIISTPEKWDGISRNWHSRNYVKK-VGLMILDEIHLLGAERGPILEVIVSR 834 (1492)
Q Consensus 759 ~~~~g~~v~~~~g~~~~~~-~--~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~-i~liViDEaH~l~~~~g~~~~~i~~~ 834 (1492)
.. .+ ...+.. .+. . .....+|+|+|.+++...+........... --+||+||||+... | . ....
T Consensus 318 ~~----~~-~~~~s~-~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~--~-~---~~~~ 385 (667)
T TIGR00348 318 KD----CA-ERIESI-AELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQY--G-E---LAKN 385 (667)
T ss_pred CC----CC-cccCCH-HHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccc--h-H---HHHH
Confidence 11 01 001110 001 1 112468999999998653332211111111 12899999997532 1 1 2222
Q ss_pred HHHhhhccCCceEEEEEcCCCCChHH--HHHHhcCCc-ceeEec--CCC---ccccCcEEEEec----cCCcc-------
Q 043190 835 MRYISSQTERAVRFIGLSTALANAGD--LADWLGVGE-IGLFNF--KPS---VRPVPLEVHIQG----YPGKF------- 895 (1492)
Q Consensus 835 l~~~~~~~~~~~~ii~lSATl~~~~~--~~~~l~~~~-~~~~~~--~~~---~r~~~l~~~~~~----~~~~~------- 895 (1492)
++.. -++..++|+|||+-...+ -...++... ..++.+ ... .-.+++...... .....
T Consensus 386 l~~~----~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~ 461 (667)
T TIGR00348 386 LKKA----LKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDE 461 (667)
T ss_pred HHhh----CCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHH
Confidence 3221 135678999999854211 112222110 011111 000 001111100000 00000
Q ss_pred -ccc--c-cc-----ccC----------------hhHHHHHh----hc--CCCCCeeEEecChHHHHHHHHHHHHHHhcC
Q 043190 896 -YCP--R-MN-----SMN----------------KPAYAAIC----TH--SPTKPVLIFVSSRRQTRLTALDLIQFAASD 944 (1492)
Q Consensus 896 -~~~--~-~~-----~~~----------------~~~~~~l~----~~--~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~ 944 (1492)
+.. . .. .+. ......+. .. ..+++++|||.++..|...+..|.+..+..
T Consensus 462 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~ 541 (667)
T TIGR00348 462 IFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEK 541 (667)
T ss_pred HHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccc
Confidence 000 0 00 000 00011111 11 225899999999999999998887654322
Q ss_pred C-CCcccCCCC---hHHHHHHHhhcCcHHHHHHhccceEeecCCC-CHHHHHHHHHHHhc-CCceEEEeccccccccCCC
Q 043190 945 E-TPRQFLGMP---EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL-NDKDRSLVEELFAN-NKIQVLVCTSTLAWGVNLP 1018 (1492)
Q Consensus 945 ~-~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l-~~~~R~~v~~~f~~-g~~~vLvaT~~l~~Gvdip 1018 (1492)
. ......... ...... ..+.+.. .++.- ..+....+.+.|++ +.++|||.++.+.+|+|.|
T Consensus 542 ~~~~~vv~s~~~~~~~~~~~---------~~~~~~~----~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP 608 (667)
T TIGR00348 542 FEASAIVMTGKESDDAEIRD---------YNKHIRT----KFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAP 608 (667)
T ss_pred cCCeeEEecCCccchhHHHH---------HHHHhcc----ccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCC
Confidence 0 000001000 000000 0010000 00000 01234568888976 6899999999999999999
Q ss_pred CcEEEEecceeeeCccCccccCCHHHHHHhhcccCCC
Q 043190 1019 AHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRP 1055 (1492)
Q Consensus 1019 ~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~ 1055 (1492)
.+.+++. +. ++.-..++|++||+.|.
T Consensus 609 ~l~tLyl-----dK------plk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 609 ILNTLYL-----DK------PLKYHGLLQAIARTNRI 634 (667)
T ss_pred ccceEEE-----ec------cccccHHHHHHHHhccc
Confidence 9988774 21 12223589999999995
No 171
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.68 E-value=4e-16 Score=200.51 Aligned_cols=175 Identities=18% Similarity=0.294 Sum_probs=123.3
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
...++|+++|||| |.++.++..+....+..+....+..| .|+..++.... ...+...+...+..++|
T Consensus 596 ~~~~~~vL~~SAT-piprtl~~~l~g~~d~s~I~~~p~~R-~~V~t~v~~~~-----------~~~i~~~i~~el~~g~q 662 (926)
T TIGR00580 596 LRTSVDVLTLSAT-PIPRTLHMSMSGIRDLSIIATPPEDR-LPVRTFVMEYD-----------PELVREAIRRELLRGGQ 662 (926)
T ss_pred cCCCCCEEEEecC-CCHHHHHHHHhcCCCcEEEecCCCCc-cceEEEEEecC-----------HHHHHHHHHHHHHcCCe
Confidence 3567899999999 45556554443321111211112222 34544433211 01122334444567899
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
++|||+++++++.+++.|.+..+ ...++.+||+|++++|..+++.
T Consensus 663 v~if~n~i~~~e~l~~~L~~~~p-----------------------------------~~~v~~lHG~m~~~eRe~im~~ 707 (926)
T TIGR00580 663 VFYVHNRIESIEKLATQLRELVP-----------------------------------EARIAIAHGQMTENELEEVMLE 707 (926)
T ss_pred EEEEECCcHHHHHHHHHHHHhCC-----------------------------------CCeEEEecCCCCHHHHHHHHHH
Confidence 99999999999999888865321 1248999999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
|++|+++|||||+++++|||+|.+++||. ++++. +....+.||+||+||.| ..|.|+++++++
T Consensus 708 F~~Gk~~ILVaT~iie~GIDIp~v~~VIi----~~a~~--~gls~l~Qr~GRvGR~g--~~g~aill~~~~ 770 (926)
T TIGR00580 708 FYKGEFQVLVCTTIIETGIDIPNANTIII----ERADK--FGLAQLYQLRGRVGRSK--KKAYAYLLYPHQ 770 (926)
T ss_pred HHcCCCCEEEECChhhcccccccCCEEEE----ecCCC--CCHHHHHHHhcCCCCCC--CCeEEEEEECCc
Confidence 99999999999999999999999888874 44432 22335889999999998 789999998654
No 172
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=7.4e-16 Score=172.86 Aligned_cols=341 Identities=12% Similarity=0.026 Sum_probs=222.9
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc---C
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL---G 763 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~---g 763 (1492)
+.+..+|.+++..+- .|+++++.-.|.+||++++.++....+...+....+++.|+++++....+.+.-.+.... +
T Consensus 285 E~~~~~~~~~~~~~~-~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~ 363 (1034)
T KOG4150|consen 285 ESGIAISLELLKFAS-EGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKS 363 (1034)
T ss_pred cchhhhhHHHHhhhh-hcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhc
Confidence 468899999999885 899999999999999999999888776665678899999999998764332211111110 1
Q ss_pred CEEEEEcCCCCcchhc--cCCCcEEEECchhhh-Hhhhcc-cCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhh
Q 043190 764 KEMVEMTGDYTPDLMA--LLSADIIISTPEKWD-GISRNW-HSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYIS 839 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~--~~~~~Iiv~Tpe~l~-~l~~~~-~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~ 839 (1492)
--|....|+.....+. ..+.+++++.|.... ..+.+. ....++-...++++||+|.+...++......+.++..+.
T Consensus 364 A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~ 443 (1034)
T KOG4150|consen 364 AYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLI 443 (1034)
T ss_pred ceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHH
Confidence 1233344555544433 347899999998752 233321 123345567899999999876666666666666554443
Q ss_pred hc--cCCceEEEEEcCCCCCh-HHHHHHhcCCcceeEecCCCccccCcEEEEec-cCCccccccccccC--hhHHHHHhh
Q 043190 840 SQ--TERAVRFIGLSTALANA-GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQG-YPGKFYCPRMNSMN--KPAYAAICT 913 (1492)
Q Consensus 840 ~~--~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~-~~~~~~~~~~~~~~--~~~~~~l~~ 913 (1492)
.. -..+.+++-.|||+.+. .-..+.+++....++..+.+.....+-+.... .+-.....+..... ..++..+
T Consensus 444 ~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~-- 521 (1034)
T KOG4150|consen 444 KGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEM-- 521 (1034)
T ss_pred HHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHH--
Confidence 22 23578999999999774 44566677766555544333222222211111 00000000000000 0111112
Q ss_pred cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHH
Q 043190 914 HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLV 993 (1492)
Q Consensus 914 ~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 993 (1492)
...+-++|-||++|+-|+.+....++.+.... .. +--.|..+.||-..+||+++
T Consensus 522 i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~----------------------~~----LV~~i~SYRGGY~A~DRRKI 575 (1034)
T KOG4150|consen 522 VQHGLRCIAFCPSRKLCELVLCLTREILAETA----------------------PH----LVEAITSYRGGYIAEDRRKI 575 (1034)
T ss_pred HHcCCcEEEeccHHHHHHHHHHHHHHHHHHhh----------------------HH----HHHHHHhhcCccchhhHHHH
Confidence 23467899999999999987766554432110 01 11235567899999999999
Q ss_pred HHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 994 EELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 994 ~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
+...-.|++.-+|||++++-|||+...+.|++.. +++|.+++.|..|||||.. +++.++.+..
T Consensus 576 E~~~F~G~L~giIaTNALELGIDIG~LDAVl~~G----------FP~S~aNl~QQ~GRAGRRN--k~SLavyva~ 638 (1034)
T KOG4150|consen 576 ESDLFGGKLCGIIATNALELGIDIGHLDAVLHLG----------FPGSIANLWQQAGRAGRRN--KPSLAVYVAF 638 (1034)
T ss_pred HHHhhCCeeeEEEecchhhhccccccceeEEEcc----------CchhHHHHHHHhccccccC--CCceEEEEEe
Confidence 9999999999999999999999999999999733 6778999999999999976 5555555543
No 173
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.66 E-value=5.9e-16 Score=173.30 Aligned_cols=181 Identities=21% Similarity=0.272 Sum_probs=130.5
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEe-ecCCcccc---cceEEEEEeeCCchhHHHHHhhHHHHHHHHHH
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFF-FDSSYRPI---PLAQQYIGISEPNFAARNELLSEICYKKVVDS 77 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~-~~~~~rpv---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (1492)
..++..|-.+||||.|. .++++.-.... ..+|+ ......+. -+++-|+..+... +.. .++..+.+.
T Consensus 257 ~lpk~rqt~LFSAT~~~kV~~l~~~~L~~--d~~~v~~~d~~~~~The~l~Qgyvv~~~~~---~f~----ll~~~LKk~ 327 (543)
T KOG0342|consen 257 ILPKQRQTLLFSATQPSKVKDLARGALKR--DPVFVNVDDGGERETHERLEQGYVVAPSDS---RFS----LLYTFLKKN 327 (543)
T ss_pred hccccceeeEeeCCCcHHHHHHHHHhhcC--CceEeecCCCCCcchhhcccceEEeccccc---hHH----HHHHHHHHh
Confidence 45788999999999997 88888776543 22332 22222221 2444444443221 111 123333333
Q ss_pred HhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 78 LRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 78 ~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
. ....+||||+|...+...|..|... ...|--.||++++..|
T Consensus 328 ~-~~~KiiVF~sT~~~vk~~~~lL~~~-------------------------------------dlpv~eiHgk~~Q~kR 369 (543)
T KOG0342|consen 328 I-KRYKIIVFFSTCMSVKFHAELLNYI-------------------------------------DLPVLEIHGKQKQNKR 369 (543)
T ss_pred c-CCceEEEEechhhHHHHHHHHHhhc-------------------------------------CCchhhhhcCCccccc
Confidence 2 2378999999999998888777532 1225556999999999
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
..+...|++-+--||+||++.|||+|+|+++.||. |+|+. ....|+||+||+||.| ..|+++++..+.++.
T Consensus 370 T~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ----~~~P~---d~~~YIHRvGRTaR~g--k~G~alL~l~p~El~ 440 (543)
T KOG0342|consen 370 TSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQ----YDPPS---DPEQYIHRVGRTAREG--KEGKALLLLAPWELG 440 (543)
T ss_pred chHHHHHhhcccceEEecchhhccCCCCCceEEEE----eCCCC---CHHHHHHHhccccccC--CCceEEEEeChhHHH
Confidence 99999999999999999999999999999999996 66554 4456999999999998 889999999888865
Q ss_pred HH
Q 043190 238 YY 239 (1492)
Q Consensus 238 ~~ 239 (1492)
.+
T Consensus 441 Fl 442 (543)
T KOG0342|consen 441 FL 442 (543)
T ss_pred HH
Confidence 43
No 174
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.66 E-value=2.7e-14 Score=183.88 Aligned_cols=354 Identities=17% Similarity=0.206 Sum_probs=200.8
Q ss_pred CCCCCCHHHHHH---HHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 685 NFSHFNPIQTQI---FHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 685 ~~~~l~~~Q~~~---i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
||+ +++-|.+. +...+.+++.+++.|+||+|||++|++|++... .+.++++.+||++|+.|++..-...+.+.
T Consensus 243 ~~e-~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~ 318 (820)
T PRK07246 243 GLE-ERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---DQRQIIVSVPTKILQDQIMAEEVKAIQEV 318 (820)
T ss_pred CCc-cCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHHHHHHHHHh
Confidence 443 89999994 444556788999999999999999999988754 26899999999999999954333335555
Q ss_pred cCCEEEEEcC----------------------------------------CCCcc-----h-------------------
Q 043190 762 LGKEMVEMTG----------------------------------------DYTPD-----L------------------- 777 (1492)
Q Consensus 762 ~g~~v~~~~g----------------------------------------~~~~~-----~------------------- 777 (1492)
+++++..+.| |.+.- .
T Consensus 319 ~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~cp~ 398 (820)
T PRK07246 319 FHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSSLF 398 (820)
T ss_pred cCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCCCc
Confidence 5665554433 21100 0
Q ss_pred ----------hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC---C-CccH--HHHHH---------
Q 043190 778 ----------MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA---E-RGPI--LEVIV--------- 832 (1492)
Q Consensus 778 ----------~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~---~-~g~~--~~~i~--------- 832 (1492)
+....++|+|+...-|...+.. ...+...+++||||||.+.+ . .+.. +..+.
T Consensus 399 ~~~cf~~~ar~~a~~AdivItNHall~~~~~~---~~~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 475 (820)
T PRK07246 399 YDYDFWKRSYEKAKTARLLITNHAYFLTRVQD---DKDFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALSG 475 (820)
T ss_pred chhhHHHHHHHHHHhCCEEEEchHHHHHHHhh---ccCCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHHH
Confidence 0001479999998765443322 22367899999999997632 1 1110 00000
Q ss_pred -------------------------------------HH----HHHhh--------------h------c----------
Q 043190 833 -------------------------------------SR----MRYIS--------------S------Q---------- 841 (1492)
Q Consensus 833 -------------------------------------~~----l~~~~--------------~------~---------- 841 (1492)
.. +..+. . .
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~~ 555 (820)
T PRK07246 476 PLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVTY 555 (820)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcceeE
Confidence 00 00000 0 0
Q ss_pred --------------cCCceEEEEEcCCCC--ChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 842 --------------TERAVRFIGLSTALA--NAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 842 --------------~~~~~~ii~lSATl~--~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
......+|++|||++ +..++.+.+|............+............+..... .......
T Consensus 556 l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~~~~~~~~~~~i~~~~p~~~~~-~~~~~~~ 634 (820)
T PRK07246 556 LNSASKAFTHFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIEKDKKQDQLVVVDQDMPLVTET-SDEVYAE 634 (820)
T ss_pred EEeeeCcHHHHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCCCChHHccEEEeCCCCCCCCCC-ChHHHHH
Confidence 011246899999995 22247778887543222211111111111111112211100 0001111
Q ss_pred hHHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCC
Q 043190 906 PAYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAG 984 (1492)
Q Consensus 906 ~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~ 984 (1492)
.+...+.. ...++++||+++|.+..+.++..|... ...+ ...|.
T Consensus 635 ~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~----------------------------------~~~~-l~Qg~ 679 (820)
T PRK07246 635 EIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQW----------------------------------QVSH-LAQEK 679 (820)
T ss_pred HHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhc----------------------------------CCcE-EEeCC
Confidence 11111111 135689999999999998887766221 1122 22221
Q ss_pred CCHHHHHHHHHHHhcCCceEEEeccccccccCCCC---cEEEEecceeeeCc---------------cCccccC--C--H
Q 043190 985 LNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPA---HLVIIKGTEYYDGK---------------TKRYVDF--P--I 1042 (1492)
Q Consensus 985 l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~---~~~VI~~~~~~~~~---------------~~~~~~~--~--~ 1042 (1492)
-. .|..+.+.|++++-.||++|..+.+|||+|+ ..+||.+-++-.|. ...++++ | +
T Consensus 680 ~~--~~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~ 757 (820)
T PRK07246 680 NG--TAYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTI 757 (820)
T ss_pred Cc--cHHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHH
Confidence 11 2456889999998899999999999999973 33455443432221 1123333 3 4
Q ss_pred HHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCc
Q 043190 1043 TDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFP 1084 (1492)
Q Consensus 1043 ~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~p 1084 (1492)
..+.|-+||.-|.. ++.|.++++-.+-....|.+.+-+.+|
T Consensus 758 iklkQg~GRLIRs~-~D~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 758 LRLKQAIGRTMRRE-DQKSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred HHHHHHhcccccCC-CCcEEEEEECCcccccHHHHHHHHhCC
Confidence 57899999999964 567877776555444456555544444
No 175
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=6.5e-15 Score=177.02 Aligned_cols=129 Identities=17% Similarity=0.140 Sum_probs=97.4
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. |++.|.-..-.++ .|+ |....||+|||+++.+|++..... |..+-+++|+--||.+-++.+...+.. +|+
T Consensus 76 g~r-~ydvQlig~l~Ll-~G~--VaEM~TGEGKTLvA~l~a~l~AL~--G~~VhvvT~NdyLA~RDae~m~~ly~~-LGL 148 (764)
T PRK12326 76 GLR-PFDVQLLGALRLL-AGD--VIEMATGEGKTLAGAIAAAGYALQ--GRRVHVITVNDYLARRDAEWMGPLYEA-LGL 148 (764)
T ss_pred CCC-cchHHHHHHHHHh-CCC--cccccCCCCHHHHHHHHHHHHHHc--CCCeEEEcCCHHHHHHHHHHHHHHHHh-cCC
Confidence 655 7888888777776 332 779999999999999998876654 889999999999999999988775554 499
Q ss_pred EEEEEcCCCCcch-hccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDL-MALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~-~~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l 820 (1492)
+|+.++++.+.+. +..-.+||+++|...+ +.+-.+.. .....+.+.+.||||+|.+
T Consensus 149 svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSi 210 (764)
T PRK12326 149 TVGWITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSV 210 (764)
T ss_pred EEEEECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhh
Confidence 9999999876543 3344789999999875 32222211 1223456889999999943
No 176
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=1.9e-15 Score=170.93 Aligned_cols=291 Identities=20% Similarity=0.257 Sum_probs=192.0
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcch-hccCCC
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL-MALLSA 783 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~-~~~~~~ 783 (1492)
+-++-+|||.||||.-|+ +.+.. .++.+|.-|.|-||.++++++... |+.|..+||.-.... ..-..+
T Consensus 192 kIi~H~GPTNSGKTy~AL----qrl~~--aksGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~~~~~~a 260 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYRAL----QRLKS--AKSGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVLDNGNPA 260 (700)
T ss_pred eEEEEeCCCCCchhHHHH----HHHhh--hccceecchHHHHHHHHHHHhhhc-----CCCccccccceeeecCCCCCcc
Confidence 446668999999998764 44433 577899999999999999987653 899999999633211 112357
Q ss_pred cEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHH
Q 043190 784 DIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLA 862 (1492)
Q Consensus 784 ~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~ 862 (1492)
+.+=||.|+... -..+++.||||++++.+ .||..|...+--+. ...+++.|=-|.++=.+++.
T Consensus 261 ~hvScTVEM~sv----------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~------AdEiHLCGepsvldlV~~i~ 324 (700)
T KOG0953|consen 261 QHVSCTVEMVSV----------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLA------ADEIHLCGEPSVLDLVRKIL 324 (700)
T ss_pred cceEEEEEEeec----------CCceEEEEehhHHhhcCcccchHHHHHHHhhh------hhhhhccCCchHHHHHHHHH
Confidence 888899885421 23678999999999965 78888776543332 12333333333332233343
Q ss_pred HHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHh
Q 043190 863 DWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAA 942 (1492)
Q Consensus 863 ~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~ 942 (1492)
+-.|-.-. + ..-.|-.|+.+ .......+....+ |.++| |-|++....+...+.+.
T Consensus 325 k~TGd~ve-v---~~YeRl~pL~v-----------------~~~~~~sl~nlk~-GDCvV-~FSkk~I~~~k~kIE~~-- 379 (700)
T KOG0953|consen 325 KMTGDDVE-V---REYERLSPLVV-----------------EETALGSLSNLKP-GDCVV-AFSKKDIFTVKKKIEKA-- 379 (700)
T ss_pred hhcCCeeE-E---EeecccCccee-----------------hhhhhhhhccCCC-CCeEE-EeehhhHHHHHHHHHHh--
Confidence 33322110 0 01111112111 0122233333333 34444 45777776666555322
Q ss_pred cCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc--CCceEEEeccccccccCCCCc
Q 043190 943 SDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN--NKIQVLVCTSTLAWGVNLPAH 1020 (1492)
Q Consensus 943 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~--g~~~vLvaT~~l~~Gvdip~~ 1020 (1492)
.+..+++++|+|+++.|..--..|.+ ++.+|||||++.++|+|+.-.
T Consensus 380 -------------------------------g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~Ir 428 (700)
T KOG0953|consen 380 -------------------------------GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLNIR 428 (700)
T ss_pred -------------------------------cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccccee
Confidence 24568999999999999999999987 899999999999999999999
Q ss_pred EEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCC-CceEEEEEecCCcHHHHHHhhcC
Q 043190 1021 LVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD-QHGKAVILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1021 ~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~-~~G~~i~l~~~~~~~~~~~~l~~ 1081 (1492)
++|+.....|++..- .+++..+..|.+|||||-|.. ..|.+..|.. ++.....+.++.
T Consensus 429 RiiF~sl~Kysg~e~--~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~-eDL~~L~~~l~~ 487 (700)
T KOG0953|consen 429 RIIFYSLIKYSGRET--EDITVSQIKQIAGRAGRFGSKYPQGEVTTLHS-EDLKLLKRILKR 487 (700)
T ss_pred EEEEeecccCCcccc--eeccHHHHHHHhhcccccccCCcCceEEEeeH-hhHHHHHHHHhC
Confidence 999987777886543 788999999999999997643 4577666643 344555666653
No 177
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.65 E-value=4.8e-15 Score=189.88 Aligned_cols=88 Identities=22% Similarity=0.221 Sum_probs=74.8
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcC---CceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhc
Q 043190 974 LQFGIGLHHAGLNDKDRSLVEELFANN---KIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMG 1050 (1492)
Q Consensus 974 ~~~~v~~~h~~l~~~~R~~v~~~f~~g---~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~G 1050 (1492)
.+++...+||+++..+|..+++.|... ..-+|++|.+.+.|+|+...++||. || .++++....|++|
T Consensus 510 ~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi----yD------~dWNP~~d~QAid 579 (1033)
T PLN03142 510 RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL----YD------SDWNPQVDLQAQD 579 (1033)
T ss_pred cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE----eC------CCCChHHHHHHHH
Confidence 467788999999999999999999753 3467899999999999999999997 55 3456889999999
Q ss_pred ccCCCCCCCceEEEEEecCCc
Q 043190 1051 RAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1051 RagR~g~~~~G~~i~l~~~~~ 1071 (1492)
|+.|.|..+.-.+|.|+....
T Consensus 580 RaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 580 RAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred HhhhcCCCceEEEEEEEeCCc
Confidence 999999877777888887764
No 178
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.64 E-value=2.6e-15 Score=191.42 Aligned_cols=170 Identities=21% Similarity=0.311 Sum_probs=114.3
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeec--CCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFD--SSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~--~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
...++++||||. .++.++--+.... .+..++ +..| .|+...+.. .... +..++.+.+.+..++|
T Consensus 408 ~~~~iL~~SATp-~prtl~~~~~g~~--~~s~i~~~p~~r-~~i~~~~~~--~~~~--------~~~~~~i~~~~~~g~q 473 (681)
T PRK10917 408 ENPHVLVMTATP-IPRTLAMTAYGDL--DVSVIDELPPGR-KPITTVVIP--DSRR--------DEVYERIREEIAKGRQ 473 (681)
T ss_pred CCCCEEEEeCCC-CHHHHHHHHcCCC--ceEEEecCCCCC-CCcEEEEeC--cccH--------HHHHHHHHHHHHcCCc
Confidence 458999999994 5555544332221 121221 1112 244433322 1111 1123445555678899
Q ss_pred EEEEEechHHHHH--------HHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHh-cccEEEEcCCCCh
Q 043190 84 AMVFVHSRKDTVK--------TAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELF-GLAVGVHHAGMLR 154 (1492)
Q Consensus 84 ~lVF~~sr~~~~~--------~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~gv~~hhagl~~ 154 (1492)
++|||++.++.+. +++.|. +.+ ...++++||+|++
T Consensus 474 ~~v~~~~ie~s~~l~~~~~~~~~~~L~------------------------------------~~~~~~~v~~lHG~m~~ 517 (681)
T PRK10917 474 AYVVCPLIEESEKLDLQSAEETYEELQ------------------------------------EAFPELRVGLLHGRMKP 517 (681)
T ss_pred EEEEEcccccccchhHHHHHHHHHHHH------------------------------------HHCCCCcEEEEeCCCCH
Confidence 9999997654432 222222 112 2459999999999
Q ss_pred hhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCC
Q 043190 155 SDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 155 ~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~ 233 (1492)
++|..+++.|++|+++|||||+++++|||+|++++||. |+++. +....+.||+|||||.| ..|.|+++++.
T Consensus 518 ~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi----~~~~r--~gls~lhQ~~GRvGR~g--~~g~~ill~~~ 588 (681)
T PRK10917 518 AEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI----ENAER--FGLAQLHQLRGRVGRGA--AQSYCVLLYKD 588 (681)
T ss_pred HHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE----eCCCC--CCHHHHHHHhhcccCCC--CceEEEEEECC
Confidence 99999999999999999999999999999999999985 66653 22344677999999998 67999999953
No 179
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.64 E-value=4.1e-14 Score=176.72 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=100.5
Q ss_pred HHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 907 AYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 907 ~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
+...+.. ...+.++||||+|++.++.++..|.+. +..+.++||++
T Consensus 431 Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~----------------------------------gi~~~~lh~~~ 476 (655)
T TIGR00631 431 LLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL----------------------------------GIKVRYLHSEI 476 (655)
T ss_pred HHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh----------------------------------ccceeeeeCCC
Confidence 3344433 355778999999999999999877432 56788999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
+..+|..+++.|+.|++.|+|||+.+++|+|+|++.+||. ++..... .+-+..+|+||+|||||. ..|.+++
T Consensus 477 ~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi----~DadifG-~p~~~~~~iqriGRagR~---~~G~vi~ 548 (655)
T TIGR00631 477 DTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVIM 548 (655)
T ss_pred CHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE----eCccccc-CCCCHHHHHHHhcCCCCC---CCCEEEE
Confidence 9999999999999999999999999999999999998876 3322110 233578999999999996 4899999
Q ss_pred EecCCcHH
Q 043190 1066 LVHEPKKS 1073 (1492)
Q Consensus 1066 l~~~~~~~ 1073 (1492)
+++..+..
T Consensus 549 ~~~~~~~~ 556 (655)
T TIGR00631 549 YADKITDS 556 (655)
T ss_pred EEcCCCHH
Confidence 98876543
No 180
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.64 E-value=2.9e-15 Score=189.90 Aligned_cols=123 Identities=24% Similarity=0.397 Sum_probs=93.6
Q ss_pred HHHHHHHHHhcCCcEEEEEechHHHHHH----HHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHh-ccc
Q 043190 70 CYKKVVDSLRQGHQAMVFVHSRKDTVKT----AQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELF-GLA 144 (1492)
Q Consensus 70 ~~~~~~~~~~~~~~~lVF~~sr~~~~~~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g 144 (1492)
++..+.+.+..+++++|||++.++.+.+ |..+.+ .|.+.+ ...
T Consensus 437 ~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~--------------------------------~L~~~~~~~~ 484 (630)
T TIGR00643 437 VYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYE--------------------------------RLKKAFPKYN 484 (630)
T ss_pred HHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHH--------------------------------HHHhhCCCCc
Confidence 3455556667889999999987654432 111111 111111 346
Q ss_pred EEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCcc
Q 043190 145 VGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRS 224 (1492)
Q Consensus 145 v~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~ 224 (1492)
|++|||+|++++|..+++.|++|+++|||||+++++|||+|++++||. |+++. +....+.||+|||||.| ..
T Consensus 485 v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi----~~~~r--~gls~lhQ~~GRvGR~g--~~ 556 (630)
T TIGR00643 485 VGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI----EDAER--FGLSQLHQLRGRVGRGD--HQ 556 (630)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE----eCCCc--CCHHHHHHHhhhcccCC--CC
Confidence 999999999999999999999999999999999999999999999885 66543 22345778999999998 67
Q ss_pred ceEEEEeC
Q 043190 225 GEGIIITS 232 (1492)
Q Consensus 225 G~~i~~~~ 232 (1492)
|.|++++.
T Consensus 557 g~~il~~~ 564 (630)
T TIGR00643 557 SYCLLVYK 564 (630)
T ss_pred cEEEEEEC
Confidence 99999984
No 181
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.63 E-value=1.7e-15 Score=199.16 Aligned_cols=174 Identities=18% Similarity=0.295 Sum_probs=119.7
Q ss_pred CCCcccEEEEcccC-CChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATL-PNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl-~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.+.++|+++||||. |....++.....+ ..+.......| .++...+..+.. . .....+...+..++
T Consensus 745 l~~~~qvLl~SATpiprtl~l~~~gl~d--~~~I~~~p~~r-~~v~~~~~~~~~--~---------~~k~~il~el~r~g 810 (1147)
T PRK10689 745 MRADVDILTLTATPIPRTLNMAMSGMRD--LSIIATPPARR-LAVKTFVREYDS--L---------VVREAILREILRGG 810 (1147)
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHhhCCC--cEEEecCCCCC-CCceEEEEecCc--H---------HHHHHHHHHHhcCC
Confidence 46789999999995 3333333322111 11211222222 344433322111 0 01123333445688
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
|++||||+++.++.+++.|.+..+ ..+|+++||+|++++|..+++
T Consensus 811 qv~vf~n~i~~ie~la~~L~~~~p-----------------------------------~~~v~~lHG~m~q~eRe~im~ 855 (1147)
T PRK10689 811 QVYYLYNDVENIQKAAERLAELVP-----------------------------------EARIAIGHGQMRERELERVMN 855 (1147)
T ss_pred eEEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCcEEEEeCCCCHHHHHHHHH
Confidence 999999999999999988875422 235899999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
.|++|+++|||||+++++|||+|.+++||- .++.. +....|+||+||+||.| ..|.|++++...
T Consensus 856 ~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi----~~ad~--fglaq~~Qr~GRvGR~g--~~g~a~ll~~~~ 919 (1147)
T PRK10689 856 DFHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH--FGLAQLHQLRGRVGRSH--HQAYAWLLTPHP 919 (1147)
T ss_pred HHHhcCCCEEEECchhhcccccccCCEEEE----ecCCC--CCHHHHHHHhhccCCCC--CceEEEEEeCCC
Confidence 999999999999999999999999888873 22221 22234899999999998 789999998654
No 182
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.63 E-value=3.1e-15 Score=166.14 Aligned_cols=189 Identities=20% Similarity=0.248 Sum_probs=137.0
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCc--ccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSY--RPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR 79 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1492)
..|+..|.=+||||... .+|++..--.+ +-.+-+-..+. .|..|..+|+.+... .+...+-+++.. .
T Consensus 184 ~LPKQRRTGLFSATq~~~v~dL~raGLRN-pv~V~V~~k~~~~tPS~L~~~Y~v~~a~---eK~~~lv~~L~~------~ 253 (567)
T KOG0345|consen 184 FLPKQRRTGLFSATQTQEVEDLARAGLRN-PVRVSVKEKSKSATPSSLALEYLVCEAD---EKLSQLVHLLNN------N 253 (567)
T ss_pred hcccccccccccchhhHHHHHHHHhhccC-ceeeeecccccccCchhhcceeeEecHH---HHHHHHHHHHhc------c
Confidence 45778888999999865 56666554444 22222222222 455587777776542 222222222111 2
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
..+.+|||.+|...++.....+..... ...+-..||.|.+..|..
T Consensus 254 ~~kK~iVFF~TCasVeYf~~~~~~~l~-----------------------------------~~~i~~iHGK~~q~~R~k 298 (567)
T KOG0345|consen 254 KDKKCIVFFPTCASVEYFGKLFSRLLK-----------------------------------KREIFSIHGKMSQKARAK 298 (567)
T ss_pred ccccEEEEecCcchHHHHHHHHHHHhC-----------------------------------CCcEEEecchhcchhHHH
Confidence 357899999999999988877765422 223667799999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+.+.|++-.-.||+||+++|||+|+|+++.||. |||+. ...+|.||+||+||.| ..|.||++..+. .+.|
T Consensus 299 ~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ----~DpP~---~~~~FvHR~GRTaR~g--r~G~Aivfl~p~-E~aY 368 (567)
T KOG0345|consen 299 VLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ----FDPPK---DPSSFVHRCGRTARAG--REGNAIVFLNPR-EEAY 368 (567)
T ss_pred HHHHHHhccCceEEeehhhhccCCCCCceEEEe----cCCCC---ChhHHHhhcchhhhcc--CccceEEEeccc-HHHH
Confidence 999999988899999999999999999999996 88765 5677999999999999 889999999884 4455
Q ss_pred HHHhcCC
Q 043190 240 LRLLTSQ 246 (1492)
Q Consensus 240 ~~~~~~~ 246 (1492)
..++...
T Consensus 369 veFl~i~ 375 (567)
T KOG0345|consen 369 VEFLRIK 375 (567)
T ss_pred HHHHHhc
Confidence 5555443
No 183
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.62 E-value=4.2e-15 Score=167.49 Aligned_cols=192 Identities=19% Similarity=0.238 Sum_probs=143.5
Q ss_pred CCCCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEee--cCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHH
Q 043190 1 VESTQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFF--DSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDS 77 (1492)
Q Consensus 1 ~~~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~--~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (1492)
++..|.+.|.++||||-.+ ..|+|+.-..+ |.-+-+. ....-|..|.+.|+.++.... .. +++..+-.+
T Consensus 240 i~~lP~~RQTLLFSATqt~svkdLaRLsL~d-P~~vsvhe~a~~atP~~L~Q~y~~v~l~~K---i~----~L~sFI~sh 311 (758)
T KOG0343|consen 240 IENLPKKRQTLLFSATQTKSVKDLARLSLKD-PVYVSVHENAVAATPSNLQQSYVIVPLEDK---ID----MLWSFIKSH 311 (758)
T ss_pred HHhCChhheeeeeecccchhHHHHHHhhcCC-CcEEEEeccccccChhhhhheEEEEehhhH---HH----HHHHHHHhc
Confidence 4677899999999999876 77888775444 3333222 223467779888888874322 11 112222222
Q ss_pred HhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 78 LRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 78 ~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
.....|||+.|.+++..+.+.+++..+ +..+-..||+|++..|
T Consensus 312 --lk~K~iVF~SscKqvkf~~e~F~rlrp-----------------------------------g~~l~~L~G~~~Q~~R 354 (758)
T KOG0343|consen 312 --LKKKSIVFLSSCKQVKFLYEAFCRLRP-----------------------------------GIPLLALHGTMSQKKR 354 (758)
T ss_pred --cccceEEEEehhhHHHHHHHHHHhcCC-----------------------------------CCceeeeccchhHHHH
Confidence 246799999999999888877765421 1125567999999999
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
..|...|-...--||+||+++|||+|+|++++||. +|.+. ...+|+||+||+.|.+ ..|.++++..+.+.+
T Consensus 355 ~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ----~DCPe---dv~tYIHRvGRtAR~~--~~G~sll~L~psEeE 425 (758)
T KOG0343|consen 355 IEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ----VDCPE---DVDTYIHRVGRTARYK--ERGESLLMLTPSEEE 425 (758)
T ss_pred HHHHHHHHHhcceEEEeehhhhccCCCcccceEEE----ecCch---hHHHHHHHhhhhhccc--CCCceEEEEcchhHH
Confidence 99999999999999999999999999999999996 66443 5567999999999976 889999999998877
Q ss_pred HHHHHhcCC
Q 043190 238 YYLRLLTSQ 246 (1492)
Q Consensus 238 ~~~~~~~~~ 246 (1492)
.+...+...
T Consensus 426 ~~l~~Lq~k 434 (758)
T KOG0343|consen 426 AMLKKLQKK 434 (758)
T ss_pred HHHHHHHHc
Confidence 766655554
No 184
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.61 E-value=3.1e-14 Score=175.98 Aligned_cols=110 Identities=22% Similarity=0.188 Sum_probs=89.4
Q ss_pred cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHH
Q 043190 914 HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLV 993 (1492)
Q Consensus 914 ~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 993 (1492)
+..+.|+||||+|+..++.++..|... +.....+|+ .+.+|+..
T Consensus 595 ~~~grpVLIft~Sve~sE~Ls~~L~~~----------------------------------gI~h~vLna--kq~~REa~ 638 (1025)
T PRK12900 595 QKKGQPVLVGTASVEVSETLSRMLRAK----------------------------------RIAHNVLNA--KQHDREAE 638 (1025)
T ss_pred hhCCCCEEEEeCcHHHHHHHHHHHHHc----------------------------------CCCceeecC--CHHHhHHH
Confidence 456889999999999999998877542 455678887 57899999
Q ss_pred HHHHhcCCceEEEeccccccccCCC---CcE-----EEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 994 EELFANNKIQVLVCTSTLAWGVNLP---AHL-----VIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 994 ~~~f~~g~~~vLvaT~~l~~Gvdip---~~~-----~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
+..|+.+...|+|||++++||+||+ .+. +||. +. .+-+...|.|+.|||||.| .+|.++.
T Consensus 639 Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIg-te---------rhes~Rid~Ql~GRtGRqG--dpGsS~f 706 (1025)
T PRK12900 639 IVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILG-SE---------RHESRRIDRQLRGRAGRQG--DPGESVF 706 (1025)
T ss_pred HHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeC-CC---------CCchHHHHHHHhhhhhcCC--CCcceEE
Confidence 9999999999999999999999999 442 3343 21 2224667999999999988 9999999
Q ss_pred EecCCc
Q 043190 1066 LVHEPK 1071 (1492)
Q Consensus 1066 l~~~~~ 1071 (1492)
+++..+
T Consensus 707 fvSleD 712 (1025)
T PRK12900 707 YVSLED 712 (1025)
T ss_pred EechhH
Confidence 988765
No 185
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.61 E-value=5e-15 Score=177.33 Aligned_cols=116 Identities=16% Similarity=0.159 Sum_probs=90.6
Q ss_pred HHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCCh
Q 043190 75 VDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLR 154 (1492)
Q Consensus 75 ~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~ 154 (1492)
.+....++++||||+|+++|+.+++.|.+... ...+..+||+|++
T Consensus 216 ~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~-----------------------------------~~~~~~~h~~~~~ 260 (358)
T TIGR01587 216 LEFIKKGGKIAIIVNTVDRAQEFYQQLKENAP-----------------------------------EEEIMLLHSRFTE 260 (358)
T ss_pred HHHhhCCCeEEEEECCHHHHHHHHHHHHhhcC-----------------------------------CCeEEEEECCCCH
Confidence 34446688999999999999999998876421 1138899999999
Q ss_pred hhHHHH----HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCc--cceEE
Q 043190 155 SDRGLT----ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDR--SGEGI 228 (1492)
Q Consensus 155 ~~R~~v----e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~--~G~~i 228 (1492)
.+|..+ .+.|++|..+|||||+++++|||+|...||. +.. ...+|+||+||+||.|... .|.++
T Consensus 261 ~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~~~~vi~-----~~~-----~~~~~iqr~GR~gR~g~~~~~~~~~~ 330 (358)
T TIGR01587 261 KDRAKKEAELLEEMKKNEKFVIVATQVIEASLDISADVMIT-----ELA-----PIDSLIQRLGRLHRYGRKNGENFEVY 330 (358)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEECcchhceeccCCCEEEE-----cCC-----CHHHHHHHhccccCCCCCCCCCCeEE
Confidence 999775 7889999999999999999999998655544 222 1236999999999998542 35888
Q ss_pred EEeCCcc
Q 043190 229 IITSHDK 235 (1492)
Q Consensus 229 ~~~~~~~ 235 (1492)
++....+
T Consensus 331 v~~~~~~ 337 (358)
T TIGR01587 331 IITIAPE 337 (358)
T ss_pred EEeecCC
Confidence 8876543
No 186
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.59 E-value=3.1e-14 Score=175.73 Aligned_cols=129 Identities=19% Similarity=0.178 Sum_probs=94.8
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. ++++|...--.+. . --|..+.||+|||+++.+|++..... |..+-+++|+--||.+-++.+...+.. +|+
T Consensus 80 Gm~-~ydVQliGg~~Lh-~--G~iaEM~TGEGKTLvA~l~a~l~al~--G~~VhvvT~ndyLA~RD~e~m~~l~~~-lGl 152 (913)
T PRK13103 80 GMR-HFDVQLIGGMTLH-E--GKIAEMRTGEGKTLVGTLAVYLNALS--GKGVHVVTVNDYLARRDANWMRPLYEF-LGL 152 (913)
T ss_pred CCC-cchhHHHhhhHhc-c--CccccccCCCCChHHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHHHhcc-cCC
Confidence 543 6677765444443 3 34789999999999999998866554 889999999999999999988876555 499
Q ss_pred EEEEEcCCCCcch-hccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDL-MALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~-~~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l 820 (1492)
+|++++++..... +..-.++|+++|..-+ +.|-.+.. .....+.+.++||||+|.+
T Consensus 153 ~v~~i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsi 214 (913)
T PRK13103 153 SVGIVTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSI 214 (913)
T ss_pred EEEEECCCCCHHHHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhhe
Confidence 9999999876543 3344699999999874 33322211 1223478899999999954
No 187
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=5.2e-15 Score=161.72 Aligned_cols=181 Identities=26% Similarity=0.389 Sum_probs=130.5
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
..++++|++.+|||.|. ..++++-+..+ |..+.+-..+..---+.+.|+.+.... +... +.+....-
T Consensus 196 ~lp~~vQv~l~SAT~p~~vl~vt~~f~~~-pv~i~vkk~~ltl~gikq~~i~v~k~~---k~~~--------l~dl~~~~ 263 (397)
T KOG0327|consen 196 ELPSDVQVVLLSATMPSDVLEVTKKFMRE-PVRILVKKDELTLEGIKQFYINVEKEE---KLDT--------LCDLYRRV 263 (397)
T ss_pred HcCcchhheeecccCcHHHHHHHHHhccC-ceEEEecchhhhhhheeeeeeeccccc---cccH--------HHHHHHhh
Confidence 46788999999999997 77777777655 222221111111111222333332221 2111 11222355
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
.|++||||||+.+..+..+|... ...+...||.|.+.+|..+.
T Consensus 264 ~q~~if~nt~r~v~~l~~~L~~~-------------------------------------~~~~s~~~~d~~q~~R~~~~ 306 (397)
T KOG0327|consen 264 TQAVIFCNTRRKVDNLTDKLRAH-------------------------------------GFTVSAIHGDMEQNERDTLM 306 (397)
T ss_pred hcceEEecchhhHHHHHHHHhhC-------------------------------------CceEEEeecccchhhhhHHH
Confidence 78999999999998888777432 23377889999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
..|+.|..+||++|+.+|+|+|+-....||+ |+.+. ...+|+||+||+||.| .+|.++.++...+...+.+
T Consensus 307 ~ef~~gssrvlIttdl~argidv~~~slvin----ydlP~---~~~~yihR~gr~gr~g--rkg~~in~v~~~d~~~lk~ 377 (397)
T KOG0327|consen 307 REFRSGSSRVLITTDLLARGIDVQQVSLVVN----YDLPA---RKENYIHRIGRAGRFG--RKGVAINFVTEEDVRDLKD 377 (397)
T ss_pred HHhhcCCceEEeeccccccccchhhcceeee----ecccc---chhhhhhhcccccccC--CCceeeeeehHhhHHHHHh
Confidence 9999999999999999999999999999997 66443 4556999999999999 8899999998877655543
No 188
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.58 E-value=5.5e-15 Score=168.95 Aligned_cols=182 Identities=21% Similarity=0.266 Sum_probs=130.0
Q ss_pred CCCCCcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCC-chhHHHHHhhHHHHHHHHHHH
Q 043190 2 ESTQRMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEP-NFAARNELLSEICYKKVVDSL 78 (1492)
Q Consensus 2 ~~~~~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 78 (1492)
++.|...|++++|||-|. .+-+++|++.. .-+.+-..+.--.-+.++++..+.. +..+.+.... +++-+.+
T Consensus 194 ~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp--~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlkl----q~L~~vf 267 (980)
T KOG4284|consen 194 NSLPQIRQVAAFSATYPRNLDNLLSKFMRDP--ALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKL----QKLTHVF 267 (980)
T ss_pred HhcchhheeeEEeccCchhHHHHHHHHhccc--ceeecccCCceeechhheeeeccCCcchHHHHHHHH----HHHHHHH
Confidence 567888999999999995 44477777643 2111112222233455555555433 2222222221 1222222
Q ss_pred h--cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhh
Q 043190 79 R--QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSD 156 (1492)
Q Consensus 79 ~--~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~ 156 (1492)
+ +-.|+||||+....|+-+|..|...+ ..+.+..|.|++.+
T Consensus 268 ~~ipy~QAlVF~~~~sra~~~a~~L~ssG-------------------------------------~d~~~ISgaM~Q~~ 310 (980)
T KOG4284|consen 268 KSIPYVQALVFCDQISRAEPIATHLKSSG-------------------------------------LDVTFISGAMSQKD 310 (980)
T ss_pred hhCchHHHHhhhhhhhhhhHHHHHhhccC-------------------------------------CCeEEeccccchhH
Confidence 2 34689999999999999988886431 12667789999999
Q ss_pred HHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 157 RGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 157 R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
|..+.+.+|.-..+|||+|+..|||||-|.+++||+ -|+.. ...+|+||+|||||.| ..|.+|.++...+
T Consensus 311 Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN----iD~p~---d~eTY~HRIGRAgRFG--~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 311 RLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN----IDAPA---DEETYFHRIGRAGRFG--AHGAAVTLLEDER 380 (980)
T ss_pred HHHHHHHhhhceEEEEEecchhhccCCccccceEEe----cCCCc---chHHHHHHhhhccccc--ccceeEEEeccch
Confidence 999999999999999999999999999999999997 45432 5567999999999999 8899998876554
No 189
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.58 E-value=3.8e-14 Score=155.01 Aligned_cols=168 Identities=26% Similarity=0.313 Sum_probs=123.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
++..++++|.+++..+.+..+++++++|||+|||.++..+++..+...+..+++|++|+++++.|..+.+...+....+.
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGLK 84 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeE
Confidence 56779999999999998333899999999999999999999998877556899999999999999998887765443113
Q ss_pred EEEEEcCCCCcc-h-hccCCC-cEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhh
Q 043190 765 EMVEMTGDYTPD-L-MALLSA-DIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISS 840 (1492)
Q Consensus 765 ~v~~~~g~~~~~-~-~~~~~~-~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~ 840 (1492)
....+.+..... . ...... +++++|++.+........ .....++++|+||+|.+.. .+...+..++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~----- 157 (201)
T smart00487 85 VVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL----- 157 (201)
T ss_pred EEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC-----
Confidence 444454433211 1 112233 999999999877777633 3466889999999998865 4444444444332
Q ss_pred ccCCceEEEEEcCCCCChHHH
Q 043190 841 QTERAVRFIGLSTALANAGDL 861 (1492)
Q Consensus 841 ~~~~~~~ii~lSATl~~~~~~ 861 (1492)
....+++++|||+++..+.
T Consensus 158 --~~~~~~v~~saT~~~~~~~ 176 (201)
T smart00487 158 --PKNVQLLLLSATPPEEIEN 176 (201)
T ss_pred --CccceEEEEecCCchhHHH
Confidence 4578999999999764333
No 190
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.57 E-value=2.4e-13 Score=153.87 Aligned_cols=122 Identities=18% Similarity=0.247 Sum_probs=99.3
Q ss_pred HHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 907 AYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 907 ~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
++..+.. ...+.++||-+-|++.|+.+..+|.+ .+.++.++|++.
T Consensus 435 L~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e----------------------------------~gikv~YlHSdi 480 (663)
T COG0556 435 LLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKE----------------------------------LGIKVRYLHSDI 480 (663)
T ss_pred HHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHh----------------------------------cCceEEeeeccc
Confidence 3444433 45678999999999999999888844 378899999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
..-+|..+++.++.|..+|||.-+.+-+|+|+|.|.+|.. .|....+ +--|-.+++|-+|||.|. ..|.+++
T Consensus 481 dTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAI----lDADKeG-FLRse~SLIQtIGRAARN---~~GkvIl 552 (663)
T COG0556 481 DTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVIL 552 (663)
T ss_pred hHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEE----eecCccc-cccccchHHHHHHHHhhc---cCCeEEE
Confidence 9999999999999999999999999999999999998764 4443222 333677999999999995 5899887
Q ss_pred EecCC
Q 043190 1066 LVHEP 1070 (1492)
Q Consensus 1066 l~~~~ 1070 (1492)
+.+.-
T Consensus 553 YAD~i 557 (663)
T COG0556 553 YADKI 557 (663)
T ss_pred Echhh
Confidence 76543
No 191
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.56 E-value=3.6e-13 Score=170.15 Aligned_cols=115 Identities=18% Similarity=0.257 Sum_probs=96.4
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
..+.+++|||+|++.++.++..|.+ .+..+..+||+++..+|..++
T Consensus 444 ~~g~~viIf~~t~~~ae~L~~~L~~----------------------------------~gi~~~~~h~~~~~~~R~~~l 489 (652)
T PRK05298 444 AKGERVLVTTLTKRMAEDLTDYLKE----------------------------------LGIKVRYLHSDIDTLERVEII 489 (652)
T ss_pred hCCCEEEEEeCCHHHHHHHHHHHhh----------------------------------cceeEEEEECCCCHHHHHHHH
Confidence 4577899999999999999987743 256788999999999999999
Q ss_pred HHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+.|+.|.+.|+|||+.+++|+|+|++.+||. ++..... ++-+..+|+||+||+||. ..|.|+.+++..+
T Consensus 490 ~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii----~d~eifG-~~~~~~~yiqr~GR~gR~---~~G~~i~~~~~~~ 558 (652)
T PRK05298 490 RDLRLGEFDVLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---VNGKVILYADKIT 558 (652)
T ss_pred HHHHcCCceEEEEeCHHhCCccccCCcEEEE----eCCcccc-cCCCHHHHHHHhccccCC---CCCEEEEEecCCC
Confidence 9999999999999999999999999998886 3332111 223678999999999994 5899999998544
No 192
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.56 E-value=1.3e-12 Score=145.50 Aligned_cols=297 Identities=18% Similarity=0.227 Sum_probs=182.8
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHH--HhcCC
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDS--LRQGH 82 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 82 (1492)
.+++++|.||||+ .+..+..|++..+ + ..... ..|.+..|....++++... ....+++. -...+
T Consensus 189 rpdLk~vvmSatl-~a~Kfq~yf~n~P---l--l~vpg-~~PvEi~Yt~e~erDylEa-------airtV~qih~~ee~G 254 (699)
T KOG0925|consen 189 RPDLKLVVMSATL-DAEKFQRYFGNAP---L--LAVPG-THPVEIFYTPEPERDYLEA-------AIRTVLQIHMCEEPG 254 (699)
T ss_pred CCCceEEEeeccc-chHHHHHHhCCCC---e--eecCC-CCceEEEecCCCChhHHHH-------HHHHHHHHHhccCCC
Confidence 3589999999998 8889999998763 2 22232 4556555544333332211 11122221 14578
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
.+|||..+..+.+..++.+......-+. ++..-.|-..| |.++..+.+
T Consensus 255 DilvFLtgeeeIe~aC~~i~re~~~L~~----------------------------~~g~l~v~PLy----P~~qq~iFe 302 (699)
T KOG0925|consen 255 DILVFLTGEEEIEDACRKISREVDNLGP----------------------------QVGPLKVVPLY----PAQQQRIFE 302 (699)
T ss_pred CEEEEecCHHHHHHHHHHHHHHHHhhcc----------------------------ccCCceEEecC----chhhccccC
Confidence 8999999999999999998755432110 00011133444 444444433
Q ss_pred HHhC---C--CccEEEeccccccccCCCcEEEEEec----cceecCCCC-------CcccCchhhhhhccCCCCCCccce
Q 043190 163 LFSE---G--LLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAG-------GWRDLGMLDIFGRAGRPQFDRSGE 226 (1492)
Q Consensus 163 ~f~~---g--~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~-------~~~~~~~~~~~GRAGR~~~d~~G~ 226 (1492)
.... | ..||+|+|+.++..+.++.+..||.- .++|+|+.+ +.+..+..||+|||||. +.|.
T Consensus 303 p~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt---~pGk 379 (699)
T KOG0925|consen 303 PAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGK 379 (699)
T ss_pred CCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC---CCCc
Confidence 3221 2 36899999999999999999999972 467988664 34555677799999997 5899
Q ss_pred EEEEeCCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCC
Q 043190 227 GIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIAD 306 (1492)
Q Consensus 227 ~i~~~~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~ 306 (1492)
|+.+++.+ .+.+-+..+.+ ..-+.++|...++..-.+|. .++-++ ++++.
T Consensus 380 cfrLYte~---~~~~em~~~ty-peilrsNL~s~VL~LKklgI---------------------~dlvhf-----dfmDp 429 (699)
T KOG0925|consen 380 CFRLYTEE---AFEKEMQPQTY-PEILRSNLSSTVLQLKKLGI---------------------DDLVHF-----DFMDP 429 (699)
T ss_pred eEEeecHH---hhhhcCCCCCc-HHHHHHhhHHHHHHHHhcCc---------------------ccccCC-----cCCCC
Confidence 99999743 33322222222 22233344444443322221 122111 23333
Q ss_pred chHHHHHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCC
Q 043190 307 PSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFEN 386 (1492)
Q Consensus 307 ~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~ 386 (1492)
|+ -+.+.+||+.|...++++.| | .+|++|.+||.|+++|+.+++++.+-... +..++|.+-++-+ -.+
T Consensus 430 PA-----PEtLMrALE~LnYLaaLdDd---G--nLT~lG~imSEFPLdPqLAkmLi~S~efn-CsnEiLsisAMLs-vPn 497 (699)
T KOG0925|consen 430 PA-----PETLMRALEVLNYLAALDDD---G--NLTSLGEIMSEFPLDPQLAKMLIGSCEFN-CSNEILSISAMLS-VPN 497 (699)
T ss_pred CC-----hHHHHHHHHHhhhhhhhCCC---c--ccchhhhhhhcCCCChHHHHHHhhcCCCC-chHHHHHHHhccc-CCc
Confidence 33 35667899999999998633 3 59999999999999999999999854433 4556666655533 233
Q ss_pred Cccchh
Q 043190 387 IVVRDE 392 (1492)
Q Consensus 387 i~~R~~ 392 (1492)
-.+|+.
T Consensus 498 cFvRp~ 503 (699)
T KOG0925|consen 498 CFVRPT 503 (699)
T ss_pred cccCCC
Confidence 344543
No 193
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.56 E-value=7.9e-15 Score=168.64 Aligned_cols=178 Identities=24% Similarity=0.313 Sum_probs=123.5
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCccc---ccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhc-
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRP---IPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQ- 80 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rp---v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (1492)
.+++++-+||||++. .+.+|...... ++..+-...|+ ..+.+..+++.... .-+-.+.+.+..
T Consensus 319 s~~i~~a~FSat~~~--~VEE~~~~i~~-~~~~vivg~~~sa~~~V~QelvF~gse~----------~K~lA~rq~v~~g 385 (593)
T KOG0344|consen 319 SPDIRVALFSATISV--YVEEWAELIKS-DLKRVIVGLRNSANETVDQELVFCGSEK----------GKLLALRQLVASG 385 (593)
T ss_pred CcchhhhhhhccccH--HHHHHHHHhhc-cceeEEEecchhHhhhhhhhheeeecch----------hHHHHHHHHHhcc
Confidence 367889999999875 55666654311 11111111221 11222222222110 001122333333
Q ss_pred -CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 81 -GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 81 -~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
..|+|||+.|...|..+...|-. .+ .-.|++.||+.++.+|..
T Consensus 386 ~~PP~lIfVQs~eRak~L~~~L~~----~~--------------------------------~i~v~vIh~e~~~~qrde 429 (593)
T KOG0344|consen 386 FKPPVLIFVQSKERAKQLFEELEI----YD--------------------------------NINVDVIHGERSQKQRDE 429 (593)
T ss_pred CCCCeEEEEecHHHHHHHHHHhhh----cc--------------------------------CcceeeEecccchhHHHH
Confidence 46899999998888777665520 00 113899999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
..+.||.|++.||+||+.++||+|+-+++.||+ ||-+. +..+|+||+||+||+| ++|.||.+++.++..+.
T Consensus 430 ~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn----yD~p~---s~~syihrIGRtgRag--~~g~Aitfytd~d~~~i 500 (593)
T KOG0344|consen 430 TMERFRIGKIWVLICTDLLARGIDFKGVNLVIN----YDFPQ---SDLSYIHRIGRTGRAG--RSGKAITFYTDQDMPRI 500 (593)
T ss_pred HHHHHhccCeeEEEehhhhhccccccCcceEEe----cCCCc---hhHHHHHHhhccCCCC--CCcceEEEeccccchhh
Confidence 999999999999999999999999999999997 77544 7788999999999999 89999999998776654
Q ss_pred H
Q 043190 240 L 240 (1492)
Q Consensus 240 ~ 240 (1492)
.
T Consensus 501 r 501 (593)
T KOG0344|consen 501 R 501 (593)
T ss_pred h
Confidence 4
No 194
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.55 E-value=3.2e-14 Score=163.11 Aligned_cols=175 Identities=22% Similarity=0.292 Sum_probs=120.7
Q ss_pred CCcccEEEEcccCCC-hHH-HHHhcCCCCCCceEe-ec-CCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh-
Q 043190 5 QRMIRIVGLSATLPN-YLE-VAQFLRVNPEMGLFF-FD-SSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR- 79 (1492)
Q Consensus 5 ~~~~riv~lSATl~n-~~~-~a~~l~~~~~~~~~~-~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (1492)
....|-++||||.|. ... .+.|+..+ .+++ ++ ...-+..+.+.+..+.+..... .+++ + +.....
T Consensus 260 ~~~~qt~mFSAtfp~~iq~l~~~fl~~~---yi~laV~rvg~~~~ni~q~i~~V~~~~kr~--~Lld-l----l~~~~~~ 329 (482)
T KOG0335|consen 260 KNNRQTLLFSATFPKEIQRLAADFLKDN---YIFLAVGRVGSTSENITQKILFVNEMEKRS--KLLD-L----LNKDDGP 329 (482)
T ss_pred ccceeEEEEeccCChhhhhhHHHHhhcc---ceEEEEeeeccccccceeEeeeecchhhHH--HHHH-H----hhcccCC
Confidence 347899999999996 333 33444321 1211 11 1122334556666665432211 1111 1 110000
Q ss_pred -cC-----CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCC
Q 043190 80 -QG-----HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGML 153 (1492)
Q Consensus 80 -~~-----~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~ 153 (1492)
.. ..++|||.|++.+..++..|.... +..--.|+.-+
T Consensus 330 ~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~-------------------------------------~~~~sIhg~~t 372 (482)
T KOG0335|consen 330 PSDGEPKWEKTLVFVETKRGADELAAFLSSNG-------------------------------------YPAKSIHGDRT 372 (482)
T ss_pred cccCCcccceEEEEeeccchhhHHHHHHhcCC-------------------------------------CCceeecchhh
Confidence 11 269999999999999998886532 12445689999
Q ss_pred hhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCC
Q 043190 154 RSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 154 ~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~ 233 (1492)
+.+|....+.|++|.+.|||||+++|||+|+|.++.||+ ||-+. .-.+|+||+||+||.| ..|.++.+++.
T Consensus 373 q~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn----yDmP~---d~d~YvHRIGRTGR~G--n~G~atsf~n~ 443 (482)
T KOG0335|consen 373 QIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN----YDMPA---DIDDYVHRIGRTGRVG--NGGRATSFFNE 443 (482)
T ss_pred hhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE----eecCc---chhhHHHhccccccCC--CCceeEEEecc
Confidence 999999999999999999999999999999999999997 66433 3456999999999999 88999999984
Q ss_pred cc
Q 043190 234 DK 235 (1492)
Q Consensus 234 ~~ 235 (1492)
.+
T Consensus 444 ~~ 445 (482)
T KOG0335|consen 444 KN 445 (482)
T ss_pred cc
Confidence 43
No 195
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.54 E-value=2.6e-14 Score=177.10 Aligned_cols=285 Identities=16% Similarity=0.148 Sum_probs=190.6
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEE-------ee-CC--ch---hHH------HHH
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIG-------IS-EP--NF---AAR------NEL 65 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~-------~~-~~--~~---~~~------~~~ 65 (1492)
.+++++|+||||+ |++.|.+|++..+ ++....|..|+..+|.- +. .. .. ... ...
T Consensus 317 ~p~LkvILMSAT~-dae~fs~YF~~~p-----vi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (924)
T KOG0920|consen 317 NPDLKVILMSATL-DAELFSDYFGGCP-----VITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKL 390 (924)
T ss_pred CCCceEEEeeeec-chHHHHHHhCCCc-----eEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchh
Confidence 4789999999998 8999999999654 46667888888776531 11 00 00 000 000
Q ss_pred -hhHHHHHH---HHHHH---hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHH
Q 043190 66 -LSEICYKK---VVDSL---RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLI 138 (1492)
Q Consensus 66 -~~~~~~~~---~~~~~---~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 138 (1492)
..++-++. +.+++ ...+.+|||.++-.++..+...|.......+.
T Consensus 391 ~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~---------------------------- 442 (924)
T KOG0920|consen 391 WEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADS---------------------------- 442 (924)
T ss_pred ccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccc----------------------------
Confidence 01111222 22222 23578999999999998888877543221110
Q ss_pred HHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEec----cceecCCCCC-------cccC
Q 043190 139 ELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAGG-------WRDL 207 (1492)
Q Consensus 139 ~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~~-------~~~~ 207 (1492)
.+.-+-..|+.|+.++++.|.+.-..|..|||+||+.++.+|.+|++..||.. -+.||+.... .+..
T Consensus 443 --~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkA 520 (924)
T KOG0920|consen 443 --LKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKA 520 (924)
T ss_pred --cceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeecccc
Confidence 01225567999999999999999999999999999999999999999999984 3458886542 1234
Q ss_pred chhhhhhccCCCCCCccceEEEEeCCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhh
Q 043190 208 GMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSI 287 (1492)
Q Consensus 208 ~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~ 287 (1492)
...||.|||||.. .|.||-+++.. .|.+++. +.++.+.+...|.+..+..-.++ ..+..++|..
T Consensus 521 na~QR~GRAGRv~---~G~cy~L~~~~---~~~~~~~-~~q~PEilR~pL~~l~L~iK~l~----~~~~~~fLsk----- 584 (924)
T KOG0920|consen 521 NAKQRRGRAGRVR---PGICYHLYTRS---RYEKLML-AYQLPEILRTPLEELCLHIKVLE----QGSIKAFLSK----- 584 (924)
T ss_pred chHHhcccccCcc---CCeeEEeechh---hhhhccc-ccCChHHHhChHHHhhheeeecc----CCCHHHHHHH-----
Confidence 4678999999984 79999999754 3443322 23344444444544433322222 1112233222
Q ss_pred hhccCccccCCCcccccCCchHHHHHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhh
Q 043190 288 RMKLNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLR 366 (1492)
Q Consensus 288 r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~ 366 (1492)
+...| . .+.+..|+..|.+.|+++.++ .+|++|+.+|++++++.-.+++....-
T Consensus 585 -aldpP--------------~-----~~~v~~a~~~L~~igaL~~~e-----~LT~LG~~la~lPvd~~igK~ll~g~i 638 (924)
T KOG0920|consen 585 -ALDPP--------------P-----ADAVDLAIERLKQIGALDESE-----ELTPLGLHLASLPVDVRIGKLLLFGAI 638 (924)
T ss_pred -hcCCC--------------C-----hHHHHHHHHHHHHhccccCcc-----cchHHHHHHHhCCCccccchhheehhh
Confidence 22222 1 367889999999999998553 799999999999999998888776543
No 196
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.54 E-value=1.3e-12 Score=171.90 Aligned_cols=136 Identities=19% Similarity=0.318 Sum_probs=91.5
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
.++++|||++|.+..+.++..|..... ..+...+.-+++...|..+.+
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~--------------------------------~~~~~ll~Qg~~~~~r~~l~~ 798 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEE--------------------------------LEGYVLLAQGVSSGSRARLTK 798 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhccc--------------------------------ccCceEEecCCCCCCHHHHHH
Confidence 467899999999999988877743211 011222233555566889999
Q ss_pred HHhcCCceEEEeccccccccCCCCc--E-EEEecceeeeCc---------------cCccccC--C--HHHHHHhhcccC
Q 043190 996 LFANNKIQVLVCTSTLAWGVNLPAH--L-VIIKGTEYYDGK---------------TKRYVDF--P--ITDILQMMGRAG 1053 (1492)
Q Consensus 996 ~f~~g~~~vLvaT~~l~~Gvdip~~--~-~VI~~~~~~~~~---------------~~~~~~~--~--~~~~~Qr~GRag 1053 (1492)
.|+.++-.||++|..+.+|||+|+. . +||-+-++-.|. ...++++ | +..+.|-+||.-
T Consensus 799 ~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlI 878 (928)
T PRK08074 799 QFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLI 878 (928)
T ss_pred HHHhcCCeEEEecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhc
Confidence 9999988999999999999999974 3 445443332221 1123443 3 557899999999
Q ss_pred CCCCCCceEEEEEecCCcHHHHHHhhcCCCc
Q 043190 1054 RPQYDQHGKAVILVHEPKKSFYKKFLYEPFP 1084 (1492)
Q Consensus 1054 R~g~~~~G~~i~l~~~~~~~~~~~~l~~~~p 1084 (1492)
|.. ++.|.++++-.+-....|.+.+-..+|
T Consensus 879 Rs~-~D~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 879 RTE-TDRGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred ccC-CceEEEEEecCccccchHHHHHHHhCC
Confidence 975 457877777555455556666655555
No 197
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.53 E-value=3.2e-14 Score=154.44 Aligned_cols=183 Identities=20% Similarity=0.240 Sum_probs=121.9
Q ss_pred CCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 5 QRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 5 ~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
.++.|.|+-|||-|. ...+|.-...+ +--+++-.-+.-.+.--...+.+... ..+...++.+ .+.......
T Consensus 396 RPDRqtvmTSATWP~~VrrLa~sY~Ke-p~~v~vGsLdL~a~~sVkQ~i~v~~d--~~k~~~~~~f-----~~~ms~ndK 467 (629)
T KOG0336|consen 396 RPDRQTVMTSATWPEGVRRLAQSYLKE-PMIVYVGSLDLVAVKSVKQNIIVTTD--SEKLEIVQFF-----VANMSSNDK 467 (629)
T ss_pred CCcceeeeecccCchHHHHHHHHhhhC-ceEEEecccceeeeeeeeeeEEeccc--HHHHHHHHHH-----HHhcCCCce
Confidence 468899999999997 66777655444 22222211122222211222222211 1222222221 122245678
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+||||..+-.+..+...+.-.. ...-..||+-++.+|+...+.
T Consensus 468 vIiFv~~K~~AD~LSSd~~l~g-------------------------------------i~~q~lHG~r~Q~DrE~al~~ 510 (629)
T KOG0336|consen 468 VIIFVSRKVMADHLSSDFCLKG-------------------------------------ISSQSLHGNREQSDREMALED 510 (629)
T ss_pred EEEEEechhhhhhccchhhhcc-------------------------------------cchhhccCChhhhhHHHHHHh
Confidence 9999998886655544332110 012345999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
|++|.++|||||+.++||+|+|+++.|++ ||- +.....|.||+||+||+| +.|.++.+...++......
T Consensus 511 ~ksG~vrILvaTDlaSRGlDv~DiTHV~N----yDF---P~nIeeYVHRvGrtGRaG--r~G~sis~lt~~D~~~a~e 579 (629)
T KOG0336|consen 511 FKSGEVRILVATDLASRGLDVPDITHVYN----YDF---PRNIEEYVHRVGRTGRAG--RTGTSISFLTRNDWSMAEE 579 (629)
T ss_pred hhcCceEEEEEechhhcCCCchhcceeec----cCC---CccHHHHHHHhcccccCC--CCcceEEEEehhhHHHHHH
Confidence 99999999999999999999999999998 553 224456999999999999 7899999988777655443
No 198
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.53 E-value=5.8e-14 Score=156.22 Aligned_cols=333 Identities=17% Similarity=0.226 Sum_probs=187.4
Q ss_pred CCCCCCHHHHHHHHhhhcCC--CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc
Q 043190 685 NFSHFNPIQTQIFHILYHTD--NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~--~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~ 762 (1492)
+-..++|+|..++..++.+| +..+|..|.|+|||++..-++... .+++|+++.+-.-+.|..++|.. +...-
T Consensus 299 Pst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti-----kK~clvLcts~VSVeQWkqQfk~-wsti~ 372 (776)
T KOG1123|consen 299 PSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI-----KKSCLVLCTSAVSVEQWKQQFKQ-WSTIQ 372 (776)
T ss_pred cccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-----cccEEEEecCccCHHHHHHHHHh-hcccC
Confidence 34568999999999999655 478999999999999877655443 67899999988777775555543 23222
Q ss_pred CCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccC-c-----cccCcccEEEEecccccCCCCccHHHHHHHHHH
Q 043190 763 GKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHS-R-----NYVKKVGLMILDEIHLLGAERGPILEVIVSRMR 836 (1492)
Q Consensus 763 g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~-~-----~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~ 836 (1492)
...++..|+|... ....++.|+|+|+.++..--++... . ..-...+++++||+|.+... .+..+++.+.
T Consensus 373 d~~i~rFTsd~Ke--~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~---MFRRVlsiv~ 447 (776)
T KOG1123|consen 373 DDQICRFTSDAKE--RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK---MFRRVLSIVQ 447 (776)
T ss_pred ccceEEeeccccc--cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH---HHHHHHHHHH
Confidence 4456667766432 2335789999999766332222111 0 11246799999999976321 2223333332
Q ss_pred HhhhccCCceEEEEEcCCCCChHHH--------------HHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccc
Q 043190 837 YISSQTERAVRFIGLSTALANAGDL--------------ADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNS 902 (1492)
Q Consensus 837 ~~~~~~~~~~~ii~lSATl~~~~~~--------------~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~ 902 (1492)
.- . -+|++||+-..+|- ++|+.....+.+. .+...... -.
T Consensus 448 aH-------c-KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA------~VqCaEVW------------Cp 501 (776)
T KOG1123|consen 448 AH-------C-KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIA------KVQCAEVW------------CP 501 (776)
T ss_pred HH-------h-hccceeEEeeccccccccceeecchhhhccHHHHHhCCcee------EEeeeeee------------cC
Confidence 21 1 28999998553331 2333322211100 00000000 11
Q ss_pred cChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeec
Q 043190 903 MNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHH 982 (1492)
Q Consensus 903 ~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h 982 (1492)
|...-|.........++.|.++-.... .+.++.|+++....+....+...+.-.+..+ .+..+--+++
T Consensus 502 Mt~eFy~eYL~~~t~kr~lLyvMNP~K-FraCqfLI~~HE~RgDKiIVFsDnvfALk~Y-----------Aikl~KpfIY 569 (776)
T KOG1123|consen 502 MTPEFYREYLRENTRKRMLLYVMNPNK-FRACQFLIKFHERRGDKIIVFSDNVFALKEY-----------AIKLGKPFIY 569 (776)
T ss_pred CCHHHHHHHHhhhhhhhheeeecCcch-hHHHHHHHHHHHhcCCeEEEEeccHHHHHHH-----------HHHcCCceEE
Confidence 111112221111222223333221111 1122223333222222111111111111111 1234556889
Q ss_pred CCCCHHHHHHHHHHHhc-CCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCC---
Q 043190 983 AGLNDKDRSLVEELFAN-NKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD--- 1058 (1492)
Q Consensus 983 ~~l~~~~R~~v~~~f~~-g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~--- 1058 (1492)
|..++.+|..|++.|+- ..++-++-+-+...++|+|..+++|.-...|. |..+-.||.||.-|+...
T Consensus 570 G~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G---------SRRQEAQRLGRILRAKk~~de 640 (776)
T KOG1123|consen 570 GPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG---------SRRQEAQRLGRILRAKKRNDE 640 (776)
T ss_pred CCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc---------chHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999985 46889999999999999999999997444333 455678999998886421
Q ss_pred -CceEEEEEecCCcHHHH
Q 043190 1059 -QHGKAVILVHEPKKSFY 1075 (1492)
Q Consensus 1059 -~~G~~i~l~~~~~~~~~ 1075 (1492)
-....|.+++.+..++|
T Consensus 641 ~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 641 EFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred ccceeeeeeeecchHHHH
Confidence 12445666666655543
No 199
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.52 E-value=8.9e-13 Score=160.12 Aligned_cols=280 Identities=20% Similarity=0.151 Sum_probs=171.7
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+ .|+..|+--...++ .|+++-+.||||.|||+-.++..+-... .+++++||+||..|+.|.++++.+......+.
T Consensus 80 G~-~~ws~QR~WakR~~-rg~SFaiiAPTGvGKTTfg~~~sl~~a~--kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 80 GF-RPWSAQRVWAKRLV-RGKSFAIIAPTGVGKTTFGLLMSLYLAK--KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CC-CchHHHHHHHHHHH-cCCceEEEcCCCCchhHHHHHHHHHHHh--cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 77 69999998888888 8999999999999999876554443332 37999999999999999999998744333113
Q ss_pred EEEE-EcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CC---------c-
Q 043190 765 EMVE-MTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER---------G- 825 (1492)
Q Consensus 765 ~v~~-~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~---------g- 825 (1492)
.+.. ++|......+ ...+.||+|+|..-+..-... ..--++++|++|++|.+.. .+ |
T Consensus 156 ~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~----L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf 231 (1187)
T COG1110 156 DVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE----LSKLKFDFIFVDDVDAILKASKNVDRLLRLLGF 231 (1187)
T ss_pred ceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH----hcccCCCEEEEccHHHHHhccccHHHHHHHcCC
Confidence 3322 7777554331 123589999998633222211 1112689999999995421 11 0
Q ss_pred ------cHHHHHHHHH-----------HHhh--------hccCCceEEEEEcCCCCCh----HHHHHHhcCCcceeEecC
Q 043190 826 ------PILEVIVSRM-----------RYIS--------SQTERAVRFIGLSTALANA----GDLADWLGVGEIGLFNFK 876 (1492)
Q Consensus 826 ------~~~~~i~~~l-----------~~~~--------~~~~~~~~ii~lSATl~~~----~~~~~~l~~~~~~~~~~~ 876 (1492)
..++.+.-+. +... ....+..++|..|||.... .-+.+.+|....
T Consensus 232 ~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG------ 305 (1187)
T COG1110 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVG------ 305 (1187)
T ss_pred CHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccC------
Confidence 0111111111 1000 0122457899999997542 334455554332
Q ss_pred CCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecC---hHHHHHHHHHHHHHHhcCCCCcccCCC
Q 043190 877 PSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSS---RRQTRLTALDLIQFAASDETPRQFLGM 953 (1492)
Q Consensus 877 ~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s---~~~~~~~a~~L~~~~~~~~~~~~~~~~ 953 (1492)
....-+...+..+... .........+... +...|||++. +..++.++..|..
T Consensus 306 --~~~~~LRNIvD~y~~~-------~~~e~~~elvk~l--G~GgLIfV~~d~G~e~aeel~e~Lr~-------------- 360 (1187)
T COG1110 306 --SGGEGLRNIVDIYVES-------ESLEKVVELVKKL--GDGGLIFVPIDYGREKAEELAEYLRS-------------- 360 (1187)
T ss_pred --ccchhhhheeeeeccC-------ccHHHHHHHHHHh--CCCeEEEEEcHHhHHHHHHHHHHHHh--------------
Confidence 1111111111111111 1112233344444 3468999999 6677777766633
Q ss_pred ChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecc----ccccccCCCC-cEEEE-ecc
Q 043190 954 PEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTS----TLAWGVNLPA-HLVII-KGT 1027 (1492)
Q Consensus 954 ~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~----~l~~Gvdip~-~~~VI-~~~ 1027 (1492)
.++.+..+|++ +...++.|..|++++||+.. ++.||+|+|. ++++| -|.
T Consensus 361 --------------------~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~Gv 415 (1187)
T COG1110 361 --------------------HGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGV 415 (1187)
T ss_pred --------------------cCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecC
Confidence 36778888874 26789999999999999764 7899999996 45544 454
Q ss_pred e
Q 043190 1028 E 1028 (1492)
Q Consensus 1028 ~ 1028 (1492)
+
T Consensus 416 P 416 (1187)
T COG1110 416 P 416 (1187)
T ss_pred C
Confidence 4
No 200
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.51 E-value=9.6e-14 Score=156.31 Aligned_cols=140 Identities=21% Similarity=0.314 Sum_probs=105.2
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHH-hcccEEEEcCCCChhhHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIEL-FGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~gv~~hhagl~~~~R~~ 159 (1492)
...++||+.+...++.-...+.........-.. ....++.+..+ .+..+--.||+|++++|..
T Consensus 425 ~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s----------------~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts 488 (708)
T KOG0348|consen 425 KQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSS----------------GAPDSEGLPPLFMDLKFYRLHGSMEQEERTS 488 (708)
T ss_pred hceeEEEEechhHHHHHHHHHHhhhhccccccc----------------CCcccCCChhhhhcceEEEecCchhHHHHHH
Confidence 447999999999998877777665443110000 00001111222 2233666799999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+.+.|+...--||.||+++|||+|+|.+..||. ||++ .+..+|+||+||+.|.| ..|.++++..+.+.+ |
T Consensus 489 ~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ----Yd~P---~s~adylHRvGRTARaG--~kG~alLfL~P~Eae-y 558 (708)
T KOG0348|consen 489 VFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ----YDPP---FSTADYLHRVGRTARAG--EKGEALLFLLPSEAE-Y 558 (708)
T ss_pred HHHhhccccceEEEehhhhhccCCCCCcCeEEE----eCCC---CCHHHHHHHhhhhhhcc--CCCceEEEecccHHH-H
Confidence 999999999999999999999999999999996 7764 37778999999999999 789999999988877 6
Q ss_pred HHHhcCC
Q 043190 240 LRLLTSQ 246 (1492)
Q Consensus 240 ~~~~~~~ 246 (1492)
.+.+...
T Consensus 559 ~~~l~~~ 565 (708)
T KOG0348|consen 559 VNYLKKH 565 (708)
T ss_pred HHHHHhh
Confidence 6555443
No 201
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.50 E-value=1.4e-13 Score=163.03 Aligned_cols=420 Identities=16% Similarity=0.165 Sum_probs=248.3
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC---CceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCC
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS---DMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGD 772 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~ 772 (1492)
.+..+ ..++.++|-+.||+|||+.+...||+.+.++. ...+.+..|+|-.+..+++++.+.-+...|-.|+.-..-
T Consensus 386 i~q~v-~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf 464 (1282)
T KOG0921|consen 386 ILQAV-AENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRF 464 (1282)
T ss_pred HHHHH-hcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccc
Confidence 44444 36788999999999999999999999887653 246788999999888888888776555544444321110
Q ss_pred CCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEc
Q 043190 773 YTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLS 852 (1492)
Q Consensus 773 ~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lS 852 (1492)
...-......|.+||-|-+...... -+..+.++|+||+|+..- .+..+..++.-|+. +.+..++++||
T Consensus 465 --~Sa~prpyg~i~fctvgvllr~~e~-----glrg~sh~i~deiherdv-~~dfll~~lr~m~~----ty~dl~v~lms 532 (1282)
T KOG0921|consen 465 --DSATPRPYGSIMFCTVGVLLRMMEN-----GLRGISHVIIDEIHERDV-DTDFVLIVLREMIS----TYRDLRVVLMS 532 (1282)
T ss_pred --cccccccccceeeeccchhhhhhhh-----cccccccccchhhhhhcc-chHHHHHHHHhhhc----cchhhhhhhhh
Confidence 0111123457999999966544443 266889999999996532 23334444444432 34578899999
Q ss_pred CCCCChHHHHHHhcCCcceeEe-------------------cCCCccccCcEEEE-ecc---------------CCcccc
Q 043190 853 TALANAGDLADWLGVGEIGLFN-------------------FKPSVRPVPLEVHI-QGY---------------PGKFYC 897 (1492)
Q Consensus 853 ATl~~~~~~~~~l~~~~~~~~~-------------------~~~~~r~~~l~~~~-~~~---------------~~~~~~ 897 (1492)
||+ |.+.+..+|+.-+..... +.+. ++.+..... ... .+..++
T Consensus 533 atI-dTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~-~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~ 610 (1282)
T KOG0921|consen 533 ATI-DTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPS-EPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYN 610 (1282)
T ss_pred ccc-chhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCC-CcCccchhhcccccCchhhhcccccccccChhhc
Confidence 998 556666666543321100 0000 000000000 000 000000
Q ss_pred ccc-ccc--------ChhHHHH----HhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhh
Q 043190 898 PRM-NSM--------NKPAYAA----ICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQ 964 (1492)
Q Consensus 898 ~~~-~~~--------~~~~~~~----l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1492)
... .+| ...+.+. +....-.+-++||.+.......+...+..+-
T Consensus 611 ~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~----------------------- 667 (1282)
T KOG0921|consen 611 ESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQ----------------------- 667 (1282)
T ss_pred chhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhh-----------------------
Confidence 000 000 0001111 1222334678888888877766665554331
Q ss_pred cCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeee----CccC----c
Q 043190 965 VTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYD----GKTK----R 1036 (1492)
Q Consensus 965 ~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~----~~~~----~ 1036 (1492)
...+.-.+.+...|+.+...++.+|++....|..+++++|++++..+.+.++..||...+.+- .... .
T Consensus 668 ----~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~A 743 (1282)
T KOG0921|consen 668 ----EFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYA 743 (1282)
T ss_pred ----hhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeee
Confidence 112333567888899999999999999999999999999999999999999888886543221 1110 1
Q ss_pred cccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHH
Q 043190 1037 YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYL 1116 (1492)
Q Consensus 1037 ~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l 1116 (1492)
..+.+..+..||.||+||. ++|.|+.+|..-..+.++......+ +...+.+.++.. ..-...+... |+
T Consensus 744 tvw~sktn~eqr~gr~grv---R~G~~f~lcs~arF~~l~~~~t~em-----~r~plhemalTi-kll~l~SI~~---fl 811 (1282)
T KOG0921|consen 744 TVWASKTNLEQRKGRAGRV---RPGFCFHLCSRARFEALEDHGTAEM-----FRTPLHEIALTI-KLLRLGSIGE---FL 811 (1282)
T ss_pred eecccccchHhhcccCcee---cccccccccHHHHHHHHHhcCcHhh-----hcCccHHHHhhH-HHHHhhhHHH---HH
Confidence 1345678899999999997 6999999988765554444332211 111122222211 0001111111 11
Q ss_pred hhchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHh
Q 043190 1117 SWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGS 1194 (1492)
Q Consensus 1117 ~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~ 1194 (1492)
. .- +++ +.-+.|..+=..|...++.+..+.. |++|+..++.++.|.-.+++.-
T Consensus 812 ~-----ka---------l~~--------~p~dav~e~e~~l~~m~~ld~n~el---t~lg~~la~l~iep~~~k~~~l 864 (1282)
T KOG0921|consen 812 G-----KA---------LQP--------PPYDAVIEAEAVLREMGALDANDEL---TPLGRMLARLPIEPRIGKMMIL 864 (1282)
T ss_pred h-----hc---------cCC--------CchhhccCchHHHHHhhhhhccCcc---cchhhhhhhccCcccccceeee
Confidence 1 10 111 1123344455567777888766555 9999999999999988887764
No 202
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.49 E-value=9.8e-14 Score=155.29 Aligned_cols=189 Identities=20% Similarity=0.251 Sum_probs=131.2
Q ss_pred CCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeec---CCcc-cccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh
Q 043190 5 QRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFD---SSYR-PIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR 79 (1492)
Q Consensus 5 ~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~---~~~r-pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1492)
+++.+.+.+|||+.. +..++++=-.. |.-..+.. ..|+ |-.+.+.++.....-+ ....|. ++.. .
T Consensus 358 ~~~l~kL~~satLsqdP~Kl~~l~l~~-Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~k-------pl~~~~-lI~~-~ 427 (620)
T KOG0350|consen 358 YPPLWKLVFSATLSQDPSKLKDLTLHI-PRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFK-------PLAVYA-LITS-N 427 (620)
T ss_pred CchhHhhhcchhhhcChHHHhhhhcCC-CceEEeecccceeeecChhhhhceeecccccc-------hHhHHH-HHHH-h
Confidence 456778899999984 77777765444 22111111 1222 2223332222221100 111121 1111 4
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+..++|+|++|...+.++++-|.=...+. ...+..+.|+|+...|..
T Consensus 428 k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~---------------------------------~~~~s~~t~~l~~k~r~k 474 (620)
T KOG0350|consen 428 KLNRTLCFVNSVSSANRLAHVLKVEFCSD---------------------------------NFKVSEFTGQLNGKRRYK 474 (620)
T ss_pred hcceEEEEecchHHHHHHHHHHHHHhccc---------------------------------cchhhhhhhhhhHHHHHH
Confidence 67899999999999999988776222211 111344679999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
..+.|..|.++|||||+.||||+|+.+++.||+ ||++. +.-.|+||+||+||+| ..|.|+.+.+..+...+
T Consensus 475 ~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN----Yd~P~---~~ktyVHR~GRTARAg--q~G~a~tll~~~~~r~F 545 (620)
T KOG0350|consen 475 MLEKFAKGDINVLICSDALARGIDVNDVDNVIN----YDPPA---SDKTYVHRAGRTARAG--QDGYAITLLDKHEKRLF 545 (620)
T ss_pred HHHHHhcCCceEEEehhhhhcCCcccccceEee----cCCCc---hhhHHHHhhccccccc--CCceEEEeeccccchHH
Confidence 999999999999999999999999999999998 88753 6778999999999999 66999999988887777
Q ss_pred HHHhcC
Q 043190 240 LRLLTS 245 (1492)
Q Consensus 240 ~~~~~~ 245 (1492)
.++++.
T Consensus 546 ~klL~~ 551 (620)
T KOG0350|consen 546 SKLLKK 551 (620)
T ss_pred HHHHHH
Confidence 776544
No 203
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.48 E-value=1.1e-13 Score=149.20 Aligned_cols=116 Identities=22% Similarity=0.341 Sum_probs=94.2
Q ss_pred HHHHHh-cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCC
Q 043190 74 VVDSLR-QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGM 152 (1492)
Q Consensus 74 ~~~~~~-~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl 152 (1492)
+++.+. -..|+||||..+.++..+.++|.-+.- .+...|||-
T Consensus 413 lLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGV-------------------------------------EavaIHGGK 455 (610)
T KOG0341|consen 413 LLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGV-------------------------------------EAVAIHGGK 455 (610)
T ss_pred HHHHhccCCCceEEEeccccChHHHHHHHHHccc-------------------------------------eeEEeecCc
Confidence 344443 356899999999999888877643211 145678999
Q ss_pred ChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeC
Q 043190 153 LRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITS 232 (1492)
Q Consensus 153 ~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~ 232 (1492)
.+++|....++||.|+-.|||||++++-|+|+|++..||+ ||-+. ....|.||+||+||.| +.|.|-.+.+
T Consensus 456 DQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN----yDMP~---eIENYVHRIGRTGRsg--~~GiATTfIN 526 (610)
T KOG0341|consen 456 DQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN----YDMPE---EIENYVHRIGRTGRSG--KTGIATTFIN 526 (610)
T ss_pred chhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc----CCChH---HHHHHHHHhcccCCCC--Ccceeeeeec
Confidence 9999999999999999999999999999999999999998 55332 2345999999999999 7899988876
Q ss_pred Ccc
Q 043190 233 HDK 235 (1492)
Q Consensus 233 ~~~ 235 (1492)
.+.
T Consensus 527 K~~ 529 (610)
T KOG0341|consen 527 KNQ 529 (610)
T ss_pred ccc
Confidence 543
No 204
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.48 E-value=2.5e-13 Score=169.34 Aligned_cols=95 Identities=24% Similarity=0.206 Sum_probs=77.4
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||||++.|+.+++.|.+. |+...||+|++.+|.
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~---------------------------------------g~~lLHG~m~q~dR~ 310 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKE---------------------------------------KFELLTGTLRGAERD 310 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhc---------------------------------------CCeEeeCCCCHHHHh
Confidence 45689999999999999999888532 346789999999999
Q ss_pred -----HHHHHHhC----CC-------ccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCC
Q 043190 159 -----LTERLFSE----GL-------LKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD 222 (1492)
Q Consensus 159 -----~ve~~f~~----g~-------i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d 222 (1492)
.+.+.|++ |. .+|||||+++++|||++. ++||+ +... ..+|+||+||+||.|..
T Consensus 311 ~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~----d~aP-----~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 311 DLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC----DLAP-----FESMQQRFGRVNRFGEL 380 (844)
T ss_pred hHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE----CCCC-----HHHHHHHhcccCCCCCC
Confidence 78899987 54 789999999999999998 55554 2211 24699999999999854
No 205
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.47 E-value=1.3e-12 Score=162.61 Aligned_cols=327 Identities=14% Similarity=0.083 Sum_probs=178.1
Q ss_pred EEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhc-------c
Q 043190 708 LLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA-------L 780 (1492)
Q Consensus 708 li~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~-------~ 780 (1492)
+..+.+|||||.+|+-.+-..+.. ++.+|+++|..+|+.|..++++..|+ +..+..++++.+...+. .
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~--Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~ 238 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRA--GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLR 238 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHc--CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhC
Confidence 334446999999999988888775 78899999999999999999988874 15688899987765332 2
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEeccccc--CCCCccHH---HHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL--GAERGPIL---EVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l--~~~~g~~~---~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
..++|+|+|-. .....++++++|||||-|.- .+++++.+ +..+.|-+ ..+..+|+.|||+
T Consensus 239 G~~~IViGtRS---------AvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~------~~~~~lvLgSaTP 303 (665)
T PRK14873 239 GQARVVVGTRS---------AVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAH------QHGCALLIGGHAR 303 (665)
T ss_pred CCCcEEEEcce---------eEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHH------HcCCcEEEECCCC
Confidence 35799999943 22345889999999999943 33444432 23333322 2478899999997
Q ss_pred CChHHHHHHhcCCcceeEecCCC---ccccCcEEEEeccCCccc--c--ccccccChhHHHHHhhcCCCCCeeEEecChH
Q 043190 856 ANAGDLADWLGVGEIGLFNFKPS---VRPVPLEVHIQGYPGKFY--C--PRMNSMNKPAYAAICTHSPTKPVLIFVSSRR 928 (1492)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~---~r~~~l~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~ 928 (1492)
+ .+... .+........... .+...-.+.+.+...... . .....+...+...+.+....+++|||+|.+.
T Consensus 304 S-les~~---~~~~g~~~~~~~~~~~~~~~~P~v~~vd~~~~~~~~~~~~~g~~ls~~l~~~i~~~L~~gqvll~lnRrG 379 (665)
T PRK14873 304 T-AEAQA---LVESGWAHDLVAPRPVVRARAPRVRALGDSGLALERDPAARAARLPSLAFRAARDALEHGPVLVQVPRRG 379 (665)
T ss_pred C-HHHHH---HHhcCcceeeccccccccCCCCeEEEEeCchhhhccccccccCccCHHHHHHHHHHHhcCcEEEEecCCC
Confidence 4 33322 2111111101101 011111222222211000 0 0001134455666655544449999999998
Q ss_pred HHHHHHHHHHHHHhcCCCCc--------------ccCCCChHHHHHHHhhcC--------------cHHHHHHhc-cceE
Q 043190 929 QTRLTALDLIQFAASDETPR--------------QFLGMPEEDLQMVLSQVT--------------DQNLRQTLQ-FGIG 979 (1492)
Q Consensus 929 ~~~~~a~~L~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~--------------~~~l~~~~~-~~v~ 979 (1492)
.+-.+...=|.....+.+.. .+++.. .....+..+. .+.|....+ ..|.
T Consensus 380 yap~l~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~--~~p~~Cp~Cgs~~l~~~g~Gter~eeeL~~~FP~~~V~ 457 (665)
T PRK14873 380 YVPSLACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRA--APDWRCPRCGSDRLRAVVVGARRTAEELGRAFPGVPVV 457 (665)
T ss_pred CCCeeEhhhCcCeeECCCCCCceeEecCCCeeECCCCcCC--CcCccCCCCcCCcceeeeccHHHHHHHHHHHCCCCCEE
Confidence 76655433332211111110 011100 0000011110 122222222 2333
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEecc----ccccccCCCCcEEEE--ecceeeeCccCccccCCHHHHHHhhcccC
Q 043190 980 LHHAGLNDKDRSLVEELFANNKIQVLVCTS----TLAWGVNLPAHLVII--KGTEYYDGKTKRYVDFPITDILQMMGRAG 1053 (1492)
Q Consensus 980 ~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~----~l~~Gvdip~~~~VI--~~~~~~~~~~~~~~~~~~~~~~Qr~GRag 1053 (1492)
. -++..+++.|. ++.+|||+|+ +++ | +++.|+ +.......+.-+..+-....+.|-+||||
T Consensus 458 r-------~d~d~~l~~~~-~~~~IlVGTqgaepm~~-g----~~~lV~ildaD~~L~~pDfRA~Er~~qll~qvagrag 524 (665)
T PRK14873 458 T-------SGGDQVVDTVD-AGPALVVATPGAEPRVE-G----GYGAALLLDAWALLGRQDLRAAEDTLRRWMAAAALVR 524 (665)
T ss_pred E-------EChHHHHHhhc-cCCCEEEECCCCccccc-C----CceEEEEEcchhhhcCCCcChHHHHHHHHHHHHHhhc
Confidence 2 23345888896 5999999999 665 3 444433 22111111111111112567899999999
Q ss_pred CCCCCCceEEEEEecCCcHHHHH
Q 043190 1054 RPQYDQHGKAVILVHEPKKSFYK 1076 (1492)
Q Consensus 1054 R~g~~~~G~~i~l~~~~~~~~~~ 1076 (1492)
|.. ..|.+++.+ .++...++
T Consensus 525 r~~--~~G~V~iq~-~p~~~~~~ 544 (665)
T PRK14873 525 PRA--DGGQVVVVA-ESSLPTVQ 544 (665)
T ss_pred CCC--CCCEEEEEe-CCCCHHHH
Confidence 965 789999886 44433333
No 206
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.45 E-value=5.6e-13 Score=168.82 Aligned_cols=182 Identities=21% Similarity=0.298 Sum_probs=138.4
Q ss_pred ccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 8 IRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 8 ~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
+-||+|+||..- .+|+++-|+...+ . ++..++-+..|...+..-..+. . ......-......+.+.|
T Consensus 421 vP~iALTATAT~~v~~DIi~~L~l~~~-~--~~~~sfnR~NL~yeV~~k~~~~--~------~~~~~~~~~~~~~~~s~I 489 (941)
T KOG0351|consen 421 VPFIALTATATERVREDVIRSLGLRNP-E--LFKSSFNRPNLKYEVSPKTDKD--A------LLDILEESKLRHPDQSGI 489 (941)
T ss_pred CCeEEeehhccHHHHHHHHHHhCCCCc-c--eecccCCCCCceEEEEeccCcc--c------hHHHHHHhhhcCCCCCeE
Confidence 789999999854 7899999987522 2 4556665556654443222110 0 000111122225678899
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|+|.+|++|+.++..|.+.. ...+++||||++.+|..|...|-
T Consensus 490 IYC~sr~~ce~vs~~L~~~~-------------------------------------~~a~~YHAGl~~~~R~~Vq~~w~ 532 (941)
T KOG0351|consen 490 IYCLSRKECEQVSAVLRSLG-------------------------------------KSAAFYHAGLPPKERETVQKAWM 532 (941)
T ss_pred EEeCCcchHHHHHHHHHHhc-------------------------------------hhhHhhhcCCCHHHHHHHHHHHh
Confidence 99999999999999987653 23678999999999999999999
Q ss_pred CCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHHHhcC
Q 043190 166 EGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLLTS 245 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~~~ 245 (1492)
.++++|+|||=.+.+|||.|+++.||+ |+-.+ +-.+|.|-+|||||.| ....|+++++..+......++..
T Consensus 533 ~~~~~VivATVAFGMGIdK~DVR~ViH----~~lPk---s~E~YYQE~GRAGRDG--~~s~C~l~y~~~D~~~l~~ll~s 603 (941)
T KOG0351|consen 533 SDKIRVIVATVAFGMGIDKPDVRFVIH----YSLPK---SFEGYYQEAGRAGRDG--LPSSCVLLYGYADISELRRLLTS 603 (941)
T ss_pred cCCCeEEEEEeeccCCCCCCceeEEEE----CCCch---hHHHHHHhccccCcCC--CcceeEEecchhHHHHHHHHHHc
Confidence 999999999999999999999999997 54332 4566999999999999 56999999998888877777665
Q ss_pred C
Q 043190 246 Q 246 (1492)
Q Consensus 246 ~ 246 (1492)
.
T Consensus 604 ~ 604 (941)
T KOG0351|consen 604 G 604 (941)
T ss_pred c
Confidence 4
No 207
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.45 E-value=7.4e-13 Score=147.96 Aligned_cols=181 Identities=17% Similarity=0.205 Sum_probs=129.9
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
..++.|.++||||++- ++.+|+-+... +-.++..+...-.--+.+.+..+.+. ..+. +.+ ...+.+. ...+
T Consensus 398 irpdrQtllFsaTf~~kIe~lard~L~d-pVrvVqg~vgean~dITQ~V~V~~s~--~~Kl---~wl-~~~L~~f-~S~g 469 (731)
T KOG0339|consen 398 IRPDRQTLLFSATFKKKIEKLARDILSD-PVRVVQGEVGEANEDITQTVSVCPSE--EKKL---NWL-LRHLVEF-SSEG 469 (731)
T ss_pred cCCcceEEEeeccchHHHHHHHHHHhcC-CeeEEEeehhccccchhheeeeccCc--HHHH---HHH-HHHhhhh-ccCC
Confidence 4678999999999986 77777766554 33333332222223344444333322 1111 111 1222333 3456
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
.+|+||..+.+++.++..|.-. .+.|+..||.|.+.+|..+..
T Consensus 470 kvlifVTKk~~~e~i~a~Lklk-------------------------------------~~~v~llhgdkdqa~rn~~ls 512 (731)
T KOG0339|consen 470 KVLIFVTKKADAEEIAANLKLK-------------------------------------GFNVSLLHGDKDQAERNEVLS 512 (731)
T ss_pred cEEEEEeccCCHHHHHHHhccc-------------------------------------cceeeeecCchhhHHHHHHHH
Confidence 8999999999999998877532 345899999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
.|+.+...|||+|+.+|+|+|+|....||+ ||--. +...+.||+||+||+| ..|.++.++++.+.+.
T Consensus 513 ~fKkk~~~VlvatDvaargldI~~ikTVvn----yD~ar---dIdththrigrtgRag--~kGvayTlvTeKDa~f 579 (731)
T KOG0339|consen 513 KFKKKRKPVLVATDVAARGLDIPSIKTVVN----YDFAR---DIDTHTHRIGRTGRAG--EKGVAYTLVTEKDAEF 579 (731)
T ss_pred HHhhcCCceEEEeeHhhcCCCccccceeec----ccccc---hhHHHHHHhhhccccc--ccceeeEEechhhHHH
Confidence 999999999999999999999999999997 55321 3334889999999999 6799999999887653
No 208
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.45 E-value=7.7e-13 Score=161.51 Aligned_cols=168 Identities=18% Similarity=0.131 Sum_probs=111.1
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceE-EEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQ-QYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMV 86 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV 86 (1492)
++.|||||.+. .+++.++.+.. +. +-+..+|..-.. ..+.+.. ...+...+ ...+.+....+.|+||
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~----vv-~IPt~kp~~r~~~~~~v~~t--~~~K~~aL----~~~i~~~~~~~~pvLI 478 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLP----VV-RIPTNRPSQRRHLPDEVFLT--AAAKWAAV----AARVRELHAQGRPVLV 478 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCC----eE-EeCCCCCccceecCCEEEeC--HHHHHHHH----HHHHHHHHhcCCCEEE
Confidence 57899999987 56788888765 22 223444442111 1111111 11222222 2222222245789999
Q ss_pred EEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhC
Q 043190 87 FVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSE 166 (1492)
Q Consensus 87 F~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~ 166 (1492)
||+|++.++.+++.|.+. ...+...||.+...++..+. |+.
T Consensus 479 ft~t~~~se~L~~~L~~~-------------------------------------gi~~~~Lhg~~~~rE~~ii~--~ag 519 (656)
T PRK12898 479 GTRSVAASERLSALLREA-------------------------------------GLPHQVLNAKQDAEEAAIVA--RAG 519 (656)
T ss_pred EeCcHHHHHHHHHHHHHC-------------------------------------CCCEEEeeCCcHHHHHHHHH--HcC
Confidence 999999999999988653 12377889987665555555 555
Q ss_pred CCccEEEeccccccccCCC---cEE-----EEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 167 GLLKVLVCTATLAWGVNLP---AHT-----VVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 167 g~i~vlvaT~tla~Gvnlp---~~~-----vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
+..+|+|||+.++||+|++ .+. +||+ |+... +...|.||+|||||.| ..|.++.+.+.++
T Consensus 520 ~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~----~d~P~---s~r~y~hr~GRTGRqG--~~G~s~~~is~eD 587 (656)
T PRK12898 520 QRGRITVATNMAGRGTDIKLEPGVAARGGLHVIL----TERHD---SARIDRQLAGRCGRQG--DPGSYEAILSLED 587 (656)
T ss_pred CCCcEEEEccchhcccCcCCccchhhcCCCEEEE----cCCCC---CHHHHHHhcccccCCC--CCeEEEEEechhH
Confidence 5557999999999999998 554 7775 44322 3345899999999999 7799999988655
No 209
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.1e-12 Score=153.99 Aligned_cols=311 Identities=17% Similarity=0.185 Sum_probs=183.7
Q ss_pred CcccEEEEcccCCChHHHH--HhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 6 RMIRIVGLSATLPNYLEVA--QFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a--~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
+.+++|.||||+ -..||. +-|-..++. ++..+-|..|+..||-.-...++.. ..+.+.| .+.+.+ +.+-
T Consensus 413 kpLKLIIMSATL-RVsDFtenk~LFpi~pP---likVdARQfPVsIHF~krT~~DYi~--eAfrKtc--~IH~kL-P~G~ 483 (1172)
T KOG0926|consen 413 KPLKLIIMSATL-RVSDFTENKRLFPIPPP---LIKVDARQFPVSIHFNKRTPDDYIA--EAFRKTC--KIHKKL-PPGG 483 (1172)
T ss_pred CceeEEEEeeeE-EecccccCceecCCCCc---eeeeecccCceEEEeccCCCchHHH--HHHHHHH--HHhhcC-CCCc
Confidence 368899999999 333433 111112122 3455778888888875444333221 1112221 222222 4567
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhc-----------CC---------------ccccCCCCc-hhhHHHHHHHhhc----
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRY-----------ED---------------LEVFNNDTH-PQLSLIKKDVMKS---- 132 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~-----------~~---------------~~~~~~~~~-~~~~~~~~~~~~~---- 132 (1492)
+|||+....++..++++|++..+.. .. ...|...+. .+.+.........
T Consensus 484 ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~ 563 (1172)
T KOG0926|consen 484 ILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFAS 563 (1172)
T ss_pred EEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchh
Confidence 9999999999999999998874310 00 000100000 0000000000000
Q ss_pred --------Cc----------hH-----HHHHhcc--------cEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccc
Q 043190 133 --------RN----------KD-----LIELFGL--------AVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWG 181 (1492)
Q Consensus 133 --------~~----------~~-----l~~~~~~--------gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~G 181 (1492)
.| ++ +.+-... -|-..++=|+.+.+.+|++.-.+|..-++|||++++..
T Consensus 564 ~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETS 643 (1172)
T KOG0926|consen 564 LRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETS 643 (1172)
T ss_pred hhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcc
Confidence 00 01 1111111 14567899999999999999999999999999999999
Q ss_pred cCCCcEEEEEec----cceecCCCCC-------cccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHHHhcCCCccc
Q 043190 182 VNLPAHTVVIKG----TQLYDPKAGG-------WRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLLTSQLPIE 250 (1492)
Q Consensus 182 vnlp~~~vVI~~----~~~~~~~~~~-------~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~~~~~~ie 250 (1492)
+.+|.+.+||.+ ...||...|- .+..+.-||+|||||.| .|.||.+++..-..........++
T Consensus 644 LTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtg---pGHcYRLYSSAVf~~~Fe~fS~PE--- 717 (1172)
T KOG0926|consen 644 LTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTG---PGHCYRLYSSAVFSNDFEEFSLPE--- 717 (1172)
T ss_pred cccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCC---CCceeehhhhHHhhcchhhhccHH---
Confidence 999999999985 3558866552 24567788999999998 699999998643321111111111
Q ss_pred cchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHHHHHHHHHHHhccc
Q 043190 251 SQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMM 330 (1492)
Q Consensus 251 s~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i 330 (1492)
-+.....+.++..-+++. . +...-| |--+++ +..++.|.+.|...|++
T Consensus 718 -Ilk~Pve~lvLqMKsMnI-~----------------kVvnFP--FPtpPd------------~~~L~~Aer~L~~LgAL 765 (1172)
T KOG0926|consen 718 -ILKKPVESLVLQMKSMNI-D----------------KVVNFP--FPTPPD------------RSALEKAERRLKALGAL 765 (1172)
T ss_pred -HhhCcHHHHHHHHHhcCc-c----------------ceecCC--CCCCcc------------HHHHHHHHHHHHHhccc
Confidence 111122222332222221 1 111111 000111 46788999999999999
Q ss_pred cccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcC
Q 043190 331 RFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRH 368 (1492)
Q Consensus 331 ~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~ 368 (1492)
+.+ | .+|++|+.||.|+++|.-.+++.-.-..+
T Consensus 766 d~~---g--~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~ 798 (1172)
T KOG0926|consen 766 DSN---G--GLTKLGKAMSLFPLSPRFSKMLATSDQHN 798 (1172)
T ss_pred ccc---C--CcccccchhcccccChhHHHHHHHHHhhc
Confidence 753 3 69999999999999999998887654443
No 210
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=1e-11 Score=151.79 Aligned_cols=129 Identities=17% Similarity=0.153 Sum_probs=89.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. |+++|.-.--.+ +.| -|..+.||-|||+++.+|+.-.... |..+-+++..--||..=++.+.. +-.++|+
T Consensus 76 G~r-~ydVQliGglvL-h~G--~IAEMkTGEGKTLvAtLpayLnAL~--GkgVhVVTvNdYLA~RDae~mg~-vy~fLGL 148 (925)
T PRK12903 76 GKR-PYDVQIIGGIIL-DLG--SVAEMKTGEGKTITSIAPVYLNALT--GKGVIVSTVNEYLAERDAEEMGK-VFNFLGL 148 (925)
T ss_pred CCC-cCchHHHHHHHH-hcC--CeeeecCCCCccHHHHHHHHHHHhc--CCceEEEecchhhhhhhHHHHHH-HHHHhCC
Confidence 654 777777655444 344 3789999999999999988654333 67777888888888776665555 4455699
Q ss_pred EEEEEcCCCCcch-hccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDL-MALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~-~~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l 820 (1492)
+|++...+..... +..-.+||.++|...| +.|-.+.. .....+.+.+.||||+|.+
T Consensus 149 svG~i~~~~~~~~rr~aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 149 SVGINKANMDPNLKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred ceeeeCCCCChHHHHHhccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 9999988766543 3334789999999875 33332221 1233467889999999943
No 211
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.44 E-value=9.8e-12 Score=152.60 Aligned_cols=129 Identities=19% Similarity=0.151 Sum_probs=93.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. ++++|...--.+. +--|..+.||-|||+++.+|+.-.... |..+-++++..-||..=++.+.. +-.++|+
T Consensus 83 G~r-~ydVQliGgl~Lh---~G~IAEM~TGEGKTL~atlpaylnAL~--GkgVhVVTvNdYLA~RDae~m~~-vy~~LGL 155 (939)
T PRK12902 83 GMR-HFDVQLIGGMVLH---EGQIAEMKTGEGKTLVATLPSYLNALT--GKGVHVVTVNDYLARRDAEWMGQ-VHRFLGL 155 (939)
T ss_pred CCC-cchhHHHhhhhhc---CCceeeecCCCChhHHHHHHHHHHhhc--CCCeEEEeCCHHHHHhHHHHHHH-HHHHhCC
Confidence 554 6677765544443 334889999999999999988765443 78899999999999987776665 4455599
Q ss_pred EEEEEcCCCCcchh-ccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDLM-ALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l 820 (1492)
+|++..++.+...+ ..-.+||+++|+..| +.|-.+.. .....+.+.+.||||+|.+
T Consensus 156 tvg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSI 217 (939)
T PRK12902 156 SVGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSI 217 (939)
T ss_pred eEEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccce
Confidence 99999887765543 334789999999886 33322221 1234577889999999953
No 212
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.43 E-value=5.2e-12 Score=155.62 Aligned_cols=129 Identities=16% Similarity=0.104 Sum_probs=92.8
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. +++.|.-..-.+ .+.-|..+.||.|||+++.+|+.-... .|..+-+++++..||.+-++.+... -..+|+
T Consensus 74 G~r-~ydvQlig~l~L---~~G~IaEm~TGEGKTL~a~l~ayl~aL--~G~~VhVvT~NdyLA~RD~e~m~pv-y~~LGL 146 (870)
T CHL00122 74 GLR-HFDVQLIGGLVL---NDGKIAEMKTGEGKTLVATLPAYLNAL--TGKGVHIVTVNDYLAKRDQEWMGQI-YRFLGL 146 (870)
T ss_pred CCC-CCchHhhhhHhh---cCCccccccCCCCchHHHHHHHHHHHh--cCCceEEEeCCHHHHHHHHHHHHHH-HHHcCC
Confidence 665 677776654443 345688999999999999998854333 3788999999999999988877664 455599
Q ss_pred EEEEEcCCCCcchh-ccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDLM-ALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~l 820 (1492)
+|++..++.+...+ ..-.+||+++|...+ +.+-.+.. .....+.+.+.||||+|.+
T Consensus 147 svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred ceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhh
Confidence 99999887765543 334789999999764 33322211 1223467889999999943
No 213
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.42 E-value=7e-13 Score=142.84 Aligned_cols=151 Identities=25% Similarity=0.314 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHhhhc------CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 688 HFNPIQTQIFHILYH------TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~------~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
.|+++|.+++..+.+ ..+++++.+|||||||.++...+.+... ++++++|++.|+.|..+.+.......
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 389999999998773 2689999999999999999877777653 99999999999999998885533221
Q ss_pred cCCEEEEE------------cCCCCc---chhccCCCcEEEECchhhhHhhhccc---------CccccCcccEEEEecc
Q 043190 762 LGKEMVEM------------TGDYTP---DLMALLSADIIISTPEKWDGISRNWH---------SRNYVKKVGLMILDEI 817 (1492)
Q Consensus 762 ~g~~v~~~------------~g~~~~---~~~~~~~~~Iiv~Tpe~l~~l~~~~~---------~~~~l~~i~liViDEa 817 (1492)
...... ...... ........+++++|..+|........ ........++||+|||
T Consensus 78 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 78 --YNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp --EEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred --hhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 111110 000000 11123467999999999876654311 1233457789999999
Q ss_pred cccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 818 HLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 818 H~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
|+...... +..++. .....+|+||||+.
T Consensus 156 H~~~~~~~--~~~i~~---------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 156 HHYPSDSS--YREIIE---------FKAAFILGLTATPF 183 (184)
T ss_dssp GCTHHHHH--HHHHHH---------SSCCEEEEEESS-S
T ss_pred hhcCCHHH--HHHHHc---------CCCCeEEEEEeCcc
Confidence 97742211 333332 34778999999974
No 214
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.42 E-value=2.2e-12 Score=132.21 Aligned_cols=141 Identities=26% Similarity=0.343 Sum_probs=101.7
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccC
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALL 781 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~ 781 (1492)
+++++.+|||+|||.++..++.+....++.++++|++|++.++.|..+.+...... +..+..+.+....... ...
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 47899999999999999999998877656789999999999999999888775543 4667777665443322 245
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
..+|+++|++.+........ ......+++|+||+|.+......... .... .......+++++|||+
T Consensus 79 ~~~i~i~t~~~~~~~~~~~~--~~~~~~~~iiiDE~h~~~~~~~~~~~--~~~~----~~~~~~~~~i~~saTp 144 (144)
T cd00046 79 KTDIVVGTPGRLLDELERLK--LSLKKLDLLILDEAHRLLNQGFGLLG--LKIL----LKLPKDRQVLLLSATP 144 (144)
T ss_pred CCCEEEECcHHHHHHHHcCC--cchhcCCEEEEeCHHHHhhcchHHHH--HHHH----hhCCccceEEEEeccC
Confidence 78999999998765555422 23567899999999988543211111 0011 1134578899999995
No 215
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.41 E-value=1.3e-11 Score=145.21 Aligned_cols=320 Identities=22% Similarity=0.229 Sum_probs=187.2
Q ss_pred CCCHHHHHHHHh---hhcCCCcEEEecCCCCCchHHHHH--HHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc-
Q 043190 688 HFNPIQTQIFHI---LYHTDNNVLLGAPTGSGKTISAEL--AMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ- 761 (1492)
Q Consensus 688 ~l~~~Q~~~i~~---~~~~~~~vli~apTGsGKT~~~~l--~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~- 761 (1492)
.++++|.+.+.- +++++-|.|+.-..|-|||++.+. ..+.... +-.+.-+|++|.-.|.+ |...|.++
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~-~~~GPfLVi~P~StL~N-----W~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRK-GIPGPFLVIAPKSTLDN-----WMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhc-CCCCCeEEEeeHhhHHH-----HHHHHHHhC
Confidence 589999997764 457788999999999999986542 2233322 23577899999877654 44444443
Q ss_pred cCCEEEEEcCCCCcchh------ccCCCcEEEECchhhhHhhhcccCccccC--cccEEEEecccccCCCCccHHHHHHH
Q 043190 762 LGKEMVEMTGDYTPDLM------ALLSADIIISTPEKWDGISRNWHSRNYVK--KVGLMILDEIHLLGAERGPILEVIVS 833 (1492)
Q Consensus 762 ~g~~v~~~~g~~~~~~~------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~--~i~liViDEaH~l~~~~g~~~~~i~~ 833 (1492)
.++++..++|+...... .....+|+|+|+|... +. ...++ ..+++||||||++..+.. .+-.++
T Consensus 241 P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i---~d---k~~lk~~~W~ylvIDEaHRiKN~~s-~L~~~l- 312 (971)
T KOG0385|consen 241 PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAI---KD---KSFLKKFNWRYLVIDEAHRIKNEKS-KLSKIL- 312 (971)
T ss_pred CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHH---hh---HHHHhcCCceEEEechhhhhcchhh-HHHHHH-
Confidence 36889999998643211 1226799999999652 21 11122 468999999999854322 222223
Q ss_pred HHHHhhhccCCceEEEEEcCCC-CC-------------------hHHHHHHhcCCcc-----eeEecCCCcccc------
Q 043190 834 RMRYISSQTERAVRFIGLSTAL-AN-------------------AGDLADWLGVGEI-----GLFNFKPSVRPV------ 882 (1492)
Q Consensus 834 ~l~~~~~~~~~~~~ii~lSATl-~~-------------------~~~~~~~l~~~~~-----~~~~~~~~~r~~------ 882 (1492)
+.+ ....| +++++|+ .| .+++..|+..... .+.......+|.
T Consensus 313 --r~f----~~~nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K 385 (971)
T KOG0385|consen 313 --REF----KTDNR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIK 385 (971)
T ss_pred --HHh----cccce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHH
Confidence 322 22334 5667775 22 3677788865321 000000000000
Q ss_pred ---------CcEEEE-ecc-------------------CCcccccccc--------------------------------
Q 043190 883 ---------PLEVHI-QGY-------------------PGKFYCPRMN-------------------------------- 901 (1492)
Q Consensus 883 ---------~l~~~~-~~~-------------------~~~~~~~~~~-------------------------------- 901 (1492)
.-++.+ .+. .+........
T Consensus 386 ~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdeh 465 (971)
T KOG0385|consen 386 SDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEH 465 (971)
T ss_pred HhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchH
Confidence 000000 000 0000000000
Q ss_pred ----ccChhHHHHHh--hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhc
Q 043190 902 ----SMNKPAYAAIC--THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQ 975 (1492)
Q Consensus 902 ----~~~~~~~~~l~--~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 975 (1492)
+-+-.+++.+. ....+.+||||..-.+ +-..|. .....-+
T Consensus 466 Lv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~----mLDILe------------------------------Dyc~~R~ 511 (971)
T KOG0385|consen 466 LVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTR----MLDILE------------------------------DYCMLRG 511 (971)
T ss_pred HHhcCcceehHHHHHHHHHhCCCeEEEeHHHHH----HHHHHH------------------------------HHHHhcC
Confidence 00000111111 1244566777743211 111111 1123346
Q ss_pred cceEeecCCCCHHHHHHHHHHHhcC---CceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhccc
Q 043190 976 FGIGLHHAGLNDKDRSLVEELFANN---KIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRA 1052 (1492)
Q Consensus 976 ~~v~~~h~~l~~~~R~~v~~~f~~g---~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRa 1052 (1492)
+...-+-|..+.++|...++.|... +.=.|++|.+.+-|||+-+.++||. ||. |+.+..=+|..-||
T Consensus 512 y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl----yDS------DWNPQ~DLQAmDRa 581 (971)
T KOG0385|consen 512 YEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL----YDS------DWNPQVDLQAMDRA 581 (971)
T ss_pred ceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE----ecC------CCCchhhhHHHHHH
Confidence 7788889999999999999999754 3457899999999999999999997 663 33444446888888
Q ss_pred CCCCCCCceEEEEEecCCcH
Q 043190 1053 GRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1053 gR~g~~~~G~~i~l~~~~~~ 1072 (1492)
.|-|...+-.+|.|++++..
T Consensus 582 HRIGQ~K~V~V~RLitentV 601 (971)
T KOG0385|consen 582 HRIGQKKPVVVYRLITENTV 601 (971)
T ss_pred HhhCCcCceEEEEEeccchH
Confidence 88888888999999988753
No 216
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.41 E-value=6e-11 Score=145.62 Aligned_cols=56 Identities=23% Similarity=0.368 Sum_probs=49.5
Q ss_pred hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 701 YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 701 ~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
+.+++.+++.||||+|||++|++|++..+....+.++||++||++|+.|+++++..
T Consensus 13 l~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~ 68 (636)
T TIGR03117 13 LRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELER 68 (636)
T ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHH
Confidence 35788999999999999999999999876644578999999999999999998775
No 217
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.40 E-value=3.5e-12 Score=136.76 Aligned_cols=183 Identities=16% Similarity=0.222 Sum_probs=121.7
Q ss_pred cccEEEEcccCCChHHHHHhcCCCCCCceEeecC--CcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcE
Q 043190 7 MIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDS--SYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQA 84 (1492)
Q Consensus 7 ~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~--~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1492)
.--.|.||||-|+ ++.+-+... ......... ..+|.|+-..+...+-++...+ +.+...++..+.++.+.+.|+
T Consensus 233 ~g~~IylTATp~k--~l~r~~~~g-~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r-~kl~~kl~~~lekq~~~~~P~ 308 (441)
T COG4098 233 EGATIYLTATPTK--KLERKILKG-NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQR-NKLPLKLKRWLEKQRKTGRPV 308 (441)
T ss_pred cCceEEEecCChH--HHHHHhhhC-CeeEeecchhhcCCCCCCCceEEeccHHHHhhh-ccCCHHHHHHHHHHHhcCCcE
Confidence 3457899999776 333333221 111111111 2344444333322221111111 112223455666677889999
Q ss_pred EEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHH
Q 043190 85 MVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLF 164 (1492)
Q Consensus 85 lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f 164 (1492)
|||+++....+++|..|.+.... ..+++-|+. ...|....++|
T Consensus 309 liF~p~I~~~eq~a~~lk~~~~~-----------------------------------~~i~~Vhs~--d~~R~EkV~~f 351 (441)
T COG4098 309 LIFFPEIETMEQVAAALKKKLPK-----------------------------------ETIASVHSE--DQHRKEKVEAF 351 (441)
T ss_pred EEEecchHHHHHHHHHHHhhCCc-----------------------------------cceeeeecc--CccHHHHHHHH
Confidence 99999999999999888655331 125666654 56788888999
Q ss_pred hCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 165 SEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 165 ~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
|+|++++|++|++|+|||.+|.++|.+-| .+...|+..+.+|++||+||.---+.|.++.+.....
T Consensus 352 R~G~~~lLiTTTILERGVTfp~vdV~Vlg-----aeh~vfTesaLVQIaGRvGRs~~~PtGdv~FFH~G~s 417 (441)
T COG4098 352 RDGKITLLITTTILERGVTFPNVDVFVLG-----AEHRVFTESALVQIAGRVGRSLERPTGDVLFFHYGKS 417 (441)
T ss_pred HcCceEEEEEeehhhcccccccceEEEec-----CCcccccHHHHHHHhhhccCCCcCCCCcEEEEeccch
Confidence 99999999999999999999999999943 4434578888999999999987667788888865543
No 218
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.40 E-value=1.7e-12 Score=159.59 Aligned_cols=209 Identities=21% Similarity=0.324 Sum_probs=141.9
Q ss_pred CCCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccc---cceEEEEEeeCCchhHHHHHhhHHHHHHHHHH
Q 043190 2 ESTQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPI---PLAQQYIGISEPNFAARNELLSEICYKKVVDS 77 (1492)
Q Consensus 2 ~~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (1492)
+..+.+.|.|.+|||+|. .+.+|.-+... |..+. ++ +|.+ .+.+.+..+.. ...+...+.++ +..
T Consensus 541 ~nlrpdrQtvlfSatfpr~m~~la~~vl~~-Pveii-v~--~~svV~k~V~q~v~V~~~--e~eKf~kL~eL-----l~e 609 (997)
T KOG0334|consen 541 QNLRPDRQTVLFSATFPRSMEALARKVLKK-PVEII-VG--GRSVVCKEVTQVVRVCAI--ENEKFLKLLEL-----LGE 609 (997)
T ss_pred hhcchhhhhhhhhhhhhHHHHHHHHHhhcC-CeeEE-Ec--cceeEeccceEEEEEecC--chHHHHHHHHH-----HHH
Confidence 345678899999999998 77788887764 54433 22 2222 23334433331 11222222222 122
Q ss_pred HhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 78 LRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 78 ~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
..+..++||||.+...|..+.+.|.+.. +.+-..|||.++.+|
T Consensus 610 ~~e~~~tiiFv~~qe~~d~l~~~L~~ag-------------------------------------~~~~slHGgv~q~dR 652 (997)
T KOG0334|consen 610 RYEDGKTIIFVDKQEKADALLRDLQKAG-------------------------------------YNCDSLHGGVDQHDR 652 (997)
T ss_pred HhhcCCEEEEEcCchHHHHHHHHHHhcC-------------------------------------cchhhhcCCCchHHH
Confidence 2447899999999999999988887431 112236999999999
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
..+++.|++|.+.+|+||+.+|+|+|++...+||+ ||... .|.+ |.||+||+||.| +.|.|+.+.++++..
T Consensus 653 ~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvn----yd~pn-h~ed--yvhR~gRTgrag--rkg~AvtFi~p~q~~ 723 (997)
T KOG0334|consen 653 SSTIEDFKNGVVNLLVATSVVARGLDVKELILVVN----YDFPN-HYED--YVHRVGRTGRAG--RKGAAVTFITPDQLK 723 (997)
T ss_pred HhHHHHHhccCceEEEehhhhhcccccccceEEEE----cccch-hHHH--HHHHhcccccCC--ccceeEEEeChHHhh
Confidence 99999999999999999999999999999999997 77553 2333 999999999999 889999999885432
Q ss_pred HH----HHHhcCCCccccchhHhHHHHHHHHHHhC
Q 043190 238 YY----LRLLTSQLPIESQFISSLKDNLNAEVALG 268 (1492)
Q Consensus 238 ~~----~~~~~~~~~ies~l~~~l~~~l~~ei~~~ 268 (1492)
+- .++.....|.. .++..|..-..++...|
T Consensus 724 ~a~dl~~al~~~~~~~P-~~l~~l~~~f~~~~~~~ 757 (997)
T KOG0334|consen 724 YAGDLCKALELSKQPVP-KLLQALSERFKAKQKAG 757 (997)
T ss_pred hHHHHHHHHHhccCCCc-hHHHHHHHHHHhhhhcc
Confidence 21 11111122222 55566666666655544
No 219
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.40 E-value=1.3e-12 Score=167.31 Aligned_cols=197 Identities=25% Similarity=0.170 Sum_probs=138.6
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHH---HHHhhHHHHHHHHHHHhc
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAAR---NELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 80 (1492)
-+++.|+|+.|||+.|+.++++-+.... ...- ++.+..|-.....+...+..-.... ...... .-..+...+.+
T Consensus 229 ~~~~~q~i~~SAT~~np~e~~~~l~~~~-f~~~-v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~~~-~~~~~~~~~~~ 305 (851)
T COG1205 229 YGSPLQIICTSATLANPGEFAEELFGRD-FEVP-VDEDGSPRGLRYFVRREPPIRELAESIRRSALAE-LATLAALLVRN 305 (851)
T ss_pred cCCCceEEEEeccccChHHHHHHhcCCc-ceee-ccCCCCCCCceEEEEeCCcchhhhhhcccchHHH-HHHHHHHHHHc
Confidence 4578999999999999988888776542 2221 5566666666555544431111111 011111 11223334578
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
+-++|||+.||+.++.............+ .. +...+..|||||.+++|.++
T Consensus 306 ~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~----------------------------l~~~v~~~~~~~~~~er~~i 356 (851)
T COG1205 306 GIQTLVFFRSRKQVELLYLSPRRRLVREG-GK----------------------------LLDAVSTYRAGLHREERRRI 356 (851)
T ss_pred CceEEEEEehhhhhhhhhhchhHHHhhcc-hh----------------------------hhhheeeccccCCHHHHHHH
Confidence 89999999999999998766655443322 11 12238999999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
|..|+.|++.++++|++|+.|||+.+...||..-.+.. +..+++||+|||||.+ ..+..+++...+..+.|.
T Consensus 357 e~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~------s~~~~~Q~~GRaGR~~--~~~l~~~v~~~~~~d~yy 428 (851)
T COG1205 357 EAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGV------SVLSFRQRAGRAGRRG--QESLVLVVLRSDPLDSYY 428 (851)
T ss_pred HHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCc------hHHHHHHhhhhccCCC--CCceEEEEeCCCccchhh
Confidence 99999999999999999999999999999996333221 4567999999999998 667788777766666554
No 220
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.40 E-value=9.7e-12 Score=153.68 Aligned_cols=166 Identities=15% Similarity=0.175 Sum_probs=115.2
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEE--EEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQ--YIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
++.||+.|... .++|.+..+.. +. .-+..+|+-.... .+... ...+... +...+.+....+.|+|
T Consensus 361 kl~GmTGTa~~~~~Ef~~iY~l~----v~-~IPt~kp~~r~d~~d~i~~~---~~~K~~a----i~~~i~~~~~~~~pvL 428 (762)
T TIGR03714 361 KLSGMTGTGKVAEKEFIETYSLS----VV-KIPTNKPIIRIDYPDKIYAT---LPEKLMA----TLEDVKEYHETGQPVL 428 (762)
T ss_pred hhcccCCCChhHHHHHHHHhCCC----EE-EcCCCCCeeeeeCCCeEEEC---HHHHHHH----HHHHHHHHhhCCCCEE
Confidence 57899999643 44455444332 32 3355666543321 11111 1112211 1223333335688999
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|||+|++.++.++..|.+. +....+.||.+.+.+|..+.++++
T Consensus 429 Ift~s~~~se~ls~~L~~~-------------------------------------gi~~~~L~a~~~~~E~~ii~~ag~ 471 (762)
T TIGR03714 429 LITGSVEMSEIYSELLLRE-------------------------------------GIPHNLLNAQNAAKEAQIIAEAGQ 471 (762)
T ss_pred EEECcHHHHHHHHHHHHHC-------------------------------------CCCEEEecCCChHHHHHHHHHcCC
Confidence 9999999999998888653 123667899999999999988888
Q ss_pred CCCccEEEeccccccccCCC---------cEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 166 EGLLKVLVCTATLAWGVNLP---------AHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp---------~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.| +|+|||+.++||+|+| +..||++ |+++.. .. ..||+|||||.| ..|.++.+++.++
T Consensus 472 ~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit----~~~ps~---ri-d~qr~GRtGRqG--~~G~s~~~is~eD 538 (762)
T TIGR03714 472 KG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGT----ERMENS---RV-DLQLRGRSGRQG--DPGSSQFFVSLED 538 (762)
T ss_pred CC--eEEEEccccccccCCCCCccccccCCeEEEEe----cCCCCc---HH-HHHhhhcccCCC--CceeEEEEEccch
Confidence 88 7999999999999999 8999996 665432 22 489999999999 7899999988665
No 221
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.39 E-value=1.3e-12 Score=140.24 Aligned_cols=182 Identities=22% Similarity=0.379 Sum_probs=129.2
Q ss_pred CcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh---c
Q 043190 6 RMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR---Q 80 (1492)
Q Consensus 6 ~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 80 (1492)
++..++||.||..| ..|..+.|+.. ..|.|...+..-.|...+..-+.. .+-+.+.+.+.++ .
T Consensus 249 ~~~~iigltatatn~vl~d~k~il~ie---~~~tf~a~fnr~nl~yev~qkp~n---------~dd~~edi~k~i~~~f~ 316 (695)
T KOG0353|consen 249 KGAPIIGLTATATNHVLDDAKDILCIE---AAFTFRAGFNRPNLKYEVRQKPGN---------EDDCIEDIAKLIKGDFA 316 (695)
T ss_pred CCCceeeeehhhhcchhhHHHHHHhHH---hhheeecccCCCCceeEeeeCCCC---------hHHHHHHHHHHhccccC
Confidence 46789999999988 77777777754 244566666444565544433221 1122334444443 3
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
|...||||-|+++|+++|..|..... ..+.+||.|.|++|.-+
T Consensus 317 gqsgiiyc~sq~d~ekva~alkn~gi-------------------------------------~a~~yha~lep~dks~~ 359 (695)
T KOG0353|consen 317 GQSGIIYCFSQKDCEKVAKALKNHGI-------------------------------------HAGAYHANLEPEDKSGA 359 (695)
T ss_pred CCcceEEEeccccHHHHHHHHHhcCc-------------------------------------cccccccccCccccccc
Confidence 66789999999999999998876532 25678999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccce------ec---------------CCCCCcccCchhh--------
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQL------YD---------------PKAGGWRDLGMLD-------- 211 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~------~~---------------~~~~~~~~~~~~~-------- 211 (1492)
-+.+..|+|+|+|||-.+.+|||-|++++||+...+ |. ...|+-+.+.++.
T Consensus 360 hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkqknksdtggstqinilevctnfkif 439 (695)
T KOG0353|consen 360 HQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIF 439 (695)
T ss_pred cccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehhhhhccceee
Confidence 999999999999999999999999999999984322 22 1112223333222
Q ss_pred -------hhhccCCCCCCccceEEEEeCCccHHH
Q 043190 212 -------IFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 212 -------~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
-.|||||.+ ....||+.+.-.+.-+
T Consensus 440 favfsekesgragrd~--~~a~cilyy~~~difk 471 (695)
T KOG0353|consen 440 FAVFSEKESGRAGRDD--MKADCILYYGFADIFK 471 (695)
T ss_pred eeeecchhccccccCC--CcccEEEEechHHHHh
Confidence 579999987 7799999987555433
No 222
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.38 E-value=1.2e-11 Score=154.24 Aligned_cols=161 Identities=19% Similarity=0.194 Sum_probs=96.1
Q ss_pred CHHHHHHHHhhhc-------CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc
Q 043190 690 NPIQTQIFHILYH-------TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~-------~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~ 762 (1492)
..+|-+|+..+.. .|=-++--|.||||||++=.-.|...-....+.+..+-.-.|.|..|.-+.+++.++-.
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~- 488 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS- 488 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC-
Confidence 4689999887641 12234556999999999765544443333456688888889998888888877765322
Q ss_pred CCEEEEEcCC-------------------------------------------CCc-----------chhccCCCcEEEE
Q 043190 763 GKEMVEMTGD-------------------------------------------YTP-----------DLMALLSADIIIS 788 (1492)
Q Consensus 763 g~~v~~~~g~-------------------------------------------~~~-----------~~~~~~~~~Iiv~ 788 (1492)
.-.+.++.|+ ... ..+..-.+.|+||
T Consensus 489 ~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~ 568 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVC 568 (1110)
T ss_pred ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEe
Confidence 1223333221 000 0001114699999
Q ss_pred CchhhhHhhhcccC-ccccC----cccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 789 TPEKWDGISRNWHS-RNYVK----KVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 789 Tpe~l~~l~~~~~~-~~~l~----~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
|+..+......... ...+. .-+.|||||+|.++......+..++..+ .. .+.++++||||+|.
T Consensus 569 TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~----~~--lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 569 TIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLA----GL--LGSRVLLSSATLPP 636 (1110)
T ss_pred cHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHH----HH--cCCCEEEEeCCCCH
Confidence 99997655421111 11111 2368999999977544333333333322 22 36789999999987
No 223
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.37 E-value=1.6e-12 Score=131.23 Aligned_cols=106 Identities=33% Similarity=0.542 Sum_probs=88.5
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||++++.++.+++.|.+. ..++.++||+++..+|.
T Consensus 26 ~~~~~~lvf~~~~~~~~~~~~~l~~~-------------------------------------~~~~~~~~~~~~~~~~~ 68 (131)
T cd00079 26 KKGGKVLIFCPSKKMLDELAELLRKP-------------------------------------GIKVAALHGDGSQEERE 68 (131)
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhc-------------------------------------CCcEEEEECCCCHHHHH
Confidence 35789999999999999988877641 23589999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEE
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIII 230 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~ 230 (1492)
.+.+.|.+|..++|+||+.+++|+|+|..+.||. +++ .|+...+.|++||+||.| ..|.++++
T Consensus 69 ~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~----~~~---~~~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 69 EVLKDFREGEIVVLVATDVIARGIDLPNVSVVIN----YDL---PWSPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEE----eCC---CCCHHHheecccccccCC--CCceEEeC
Confidence 9999999999999999999999999997666663 332 345566999999999999 46877653
No 224
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.37 E-value=5.2e-12 Score=157.80 Aligned_cols=169 Identities=15% Similarity=0.190 Sum_probs=114.2
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++.|||.|... .+++.+..+. ++..+ +..+|+-....--.+.. ....+...+ ...+.+....+.|+|||
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y~l----~v~~I-Pt~kp~~r~d~~~~i~~-~~~~K~~al----~~~i~~~~~~~~pvLIf 434 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVYNM----EVVQI-PTNRPIIRIDYPDKVFV-TLDEKYKAV----IEEVKERHETGRPVLIG 434 (790)
T ss_pred HHhccCCCChHHHHHHHHHhCC----cEEEC-CCCCCcccccCCCeEEc-CHHHHHHHH----HHHHHHHHhcCCCEEEE
Confidence 57799999754 3344444433 23333 45566543221000101 111222211 12222222468899999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|++.++.++..|.+. ...+...||.+.+.+|..+..+++.|
T Consensus 435 ~~t~~~se~l~~~L~~~-------------------------------------gi~~~~L~~~~~~~e~~~i~~ag~~g 477 (790)
T PRK09200 435 TGSIEQSETFSKLLDEA-------------------------------------GIPHNLLNAKNAAKEAQIIAEAGQKG 477 (790)
T ss_pred eCcHHHHHHHHHHHHHC-------------------------------------CCCEEEecCCccHHHHHHHHHcCCCC
Confidence 99999999999888653 12377889999999999998888877
Q ss_pred CccEEEeccccccccCC---CcEE-----EEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 168 LLKVLVCTATLAWGVNL---PAHT-----VVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnl---p~~~-----vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
+|+|||+.++||+|+ |.+. +||+ |+... +...|.||+|||||.| ..|.++.+++.++
T Consensus 478 --~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~----~d~p~---s~r~y~qr~GRtGR~G--~~G~s~~~is~eD 542 (790)
T PRK09200 478 --AVTVATNMAGRGTDIKLGEGVHELGGLAVIG----TERME---SRRVDLQLRGRSGRQG--DPGSSQFFISLED 542 (790)
T ss_pred --eEEEEccchhcCcCCCcccccccccCcEEEe----ccCCC---CHHHHHHhhccccCCC--CCeeEEEEEcchH
Confidence 799999999999999 6887 8886 44322 3345999999999999 7899999887654
No 225
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.36 E-value=2.4e-10 Score=145.94 Aligned_cols=67 Identities=22% Similarity=0.216 Sum_probs=53.6
Q ss_pred CCCCCCHHHHHHHHhh---hcC-----CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHIL---YHT-----DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~---~~~-----~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~ 753 (1492)
||+ .++-|.+....+ +.+ ++.++|.||||+|||++|++|.+..... .+.++||-+.|++|-+|....
T Consensus 23 ~~e-~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~-~~k~vVIST~T~~LQeQL~~k 97 (697)
T PRK11747 23 GFI-PRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA-EKKKLVISTATVALQEQLVSK 97 (697)
T ss_pred CCC-cCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH-cCCeEEEEcCCHHHHHHHHhh
Confidence 554 899999965544 444 4678999999999999999998765443 378999999999999998643
No 226
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.35 E-value=2.9e-12 Score=145.45 Aligned_cols=123 Identities=24% Similarity=0.379 Sum_probs=97.8
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
++..+|||++.|..++.++..|.+...... ..|.. .+-.-|-.||++.++..
T Consensus 365 ~~~RvIVFT~yRdTae~i~~~L~~~~~~~~--~rFiG--------------------------Qa~r~~~~GMsQkeQ~e 416 (542)
T COG1111 365 GDSRVIVFTEYRDTAEEIVNFLKKIGIKAR--VRFIG--------------------------QASREGDKGMSQKEQKE 416 (542)
T ss_pred CCceEEEEehhHhHHHHHHHHHHhcCCcce--eEEee--------------------------ccccccccccCHHHHHH
Confidence 346899999999999999988876543211 12321 11123458999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc--cHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD--KLA 237 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~--~~~ 237 (1492)
+.+.|++|...||||||+.+.|+|+|.++.||- |+|-. +++-++||.||+||- +.|.++++.... +..
T Consensus 417 iI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVif----YEpvp---SeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdea 486 (542)
T COG1111 417 IIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIF----YEPVP---SEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEA 486 (542)
T ss_pred HHHHHhcCCceEEEEcccccccCCCCcccEEEE----ecCCc---HHHHHHHhhCccccC---CCCeEEEEEecCchHHH
Confidence 999999999999999999999999999999994 88754 777899999999995 679999998877 444
Q ss_pred HHH
Q 043190 238 YYL 240 (1492)
Q Consensus 238 ~~~ 240 (1492)
+|.
T Consensus 487 yy~ 489 (542)
T COG1111 487 YYY 489 (542)
T ss_pred HHH
Confidence 444
No 227
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.34 E-value=2e-12 Score=141.58 Aligned_cols=186 Identities=19% Similarity=0.258 Sum_probs=125.5
Q ss_pred CcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCc-hhHHHHHhhHHHHHHHHHH--Hh-
Q 043190 6 RMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPN-FAARNELLSEICYKKVVDS--LR- 79 (1492)
Q Consensus 6 ~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~- 79 (1492)
+++--|+|.||-.- -+|++.-|.-..|-.+| -.+.+|. +| |+.+.-++ .......+.+.+...+-.. .+
T Consensus 175 ~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiF-kTP~FR~-NL---FYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~ 249 (641)
T KOG0352|consen 175 PGVPWVALTATANAKVQEDIAFQLKLRNPVAIF-KTPTFRD-NL---FYDNHMKSFITDCLTVLADFSSSNLGKHEKASQ 249 (641)
T ss_pred CCCceEEeecccChhHHHHHHHHHhhcCcHHhc-cCcchhh-hh---hHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhc
Confidence 46778999999754 67888888655333332 1233442 11 11110000 0011112222222111100 00
Q ss_pred c----CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChh
Q 043190 80 Q----GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRS 155 (1492)
Q Consensus 80 ~----~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~ 155 (1492)
. .+=.||||.||.+||++|-.+... +-|.-.+||||-..
T Consensus 250 ~~K~~~GCGIVYCRTR~~cEq~AI~l~~~-------------------------------------Gi~A~AYHAGLK~~ 292 (641)
T KOG0352|consen 250 NKKTFTGCGIVYCRTRNECEQVAIMLEIA-------------------------------------GIPAMAYHAGLKKK 292 (641)
T ss_pred CCCCcCcceEEEeccHHHHHHHHHHhhhc-------------------------------------CcchHHHhcccccc
Confidence 0 123799999999999999766432 11233579999999
Q ss_pred hHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 156 DRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 156 ~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
+|..|.+.+.+|++.|||||..+.+|||-|.+++||+ ||+.. +...|.|-.|||||.| ....|=+.++.++
T Consensus 293 ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH----W~~~q---n~AgYYQESGRAGRDG--k~SyCRLYYsR~D 363 (641)
T KOG0352|consen 293 ERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH----WSPSQ---NLAGYYQESGRAGRDG--KRSYCRLYYSRQD 363 (641)
T ss_pred hhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe----cCchh---hhHHHHHhccccccCC--Cccceeeeecccc
Confidence 9999999999999999999999999999999999996 88764 5567999999999999 7799999999888
Q ss_pred HHHHHHH
Q 043190 236 LAYYLRL 242 (1492)
Q Consensus 236 ~~~~~~~ 242 (1492)
.....-+
T Consensus 364 ~~~i~FL 370 (641)
T KOG0352|consen 364 KNALNFL 370 (641)
T ss_pred hHHHHHH
Confidence 7665433
No 228
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.34 E-value=6.3e-12 Score=148.41 Aligned_cols=87 Identities=17% Similarity=0.293 Sum_probs=69.1
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+++++||||+|++.++.+++.|.+.. ....+..|||.+++.+|..
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~-----------------------------------~~~~~~~l~g~~~~~~R~~ 315 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQG-----------------------------------LGDDIGRITGFAPKKDRER 315 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhC-----------------------------------CCceEEeeecCCCHHHHHH
Confidence 56799999999999999999886531 0123778999999999865
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccC
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAG 217 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAG 217 (1492)
+ ++.+|||||+++++|||+|...||+ +|. +..+|+||+||+|
T Consensus 316 ~------~~~~iLVaTdv~~rGiDi~~~~vi~------~p~----~~~~yiqR~GR~g 357 (357)
T TIGR03158 316 A------MQFDILLGTSTVDVGVDFKRDWLIF------SAR----DAAAFWQRLGRLG 357 (357)
T ss_pred h------ccCCEEEEecHHhcccCCCCceEEE------CCC----CHHHHhhhcccCC
Confidence 4 4789999999999999999885553 221 3346999999998
No 229
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.34 E-value=3e-12 Score=115.50 Aligned_cols=75 Identities=28% Similarity=0.502 Sum_probs=68.0
Q ss_pred HHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcc
Q 043190 972 QTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGR 1051 (1492)
Q Consensus 972 ~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GR 1051 (1492)
+..+..+..+||+++..+|..+++.|++|..+|||||+++++|+|+|++++||. |+ .+.+..+|.|++||
T Consensus 4 ~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~----~~------~~~~~~~~~Q~~GR 73 (78)
T PF00271_consen 4 EKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF----YD------PPWSPEEYIQRIGR 73 (78)
T ss_dssp HHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE----SS------SESSHHHHHHHHTT
T ss_pred HHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc----cc------cCCCHHHHHHHhhc
Confidence 445789999999999999999999999999999999999999999999999997 33 24478999999999
Q ss_pred cCCCC
Q 043190 1052 AGRPQ 1056 (1492)
Q Consensus 1052 agR~g 1056 (1492)
+||.|
T Consensus 74 ~~R~g 78 (78)
T PF00271_consen 74 AGRIG 78 (78)
T ss_dssp SSTTT
T ss_pred CCCCC
Confidence 99975
No 230
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.32 E-value=9.1e-11 Score=151.78 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=59.2
Q ss_pred cCCCCCCHHHHHHHHh---hhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 684 YNFSHFNPIQTQIFHI---LYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~---~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
|....+++.|.+.+.. ++.+++.+++.||||+|||++|+.|++..... .+.+++|.++|+.|..|..++...
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~-~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE-EGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH-cCCcEEEECCCHHHHHHHHHhhcc
Confidence 4455699999997754 45567779999999999999999999987554 358999999999999998877544
No 231
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.32 E-value=6.8e-12 Score=157.02 Aligned_cols=122 Identities=20% Similarity=0.270 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcC
Q 043190 71 YKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHA 150 (1492)
Q Consensus 71 ~~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hha 150 (1492)
...+.+..+++.++||||+|++.++.+++.|.+.. ..+++.||
T Consensus 432 l~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g-------------------------------------i~~~~lh~ 474 (655)
T TIGR00631 432 LSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG-------------------------------------IKVRYLHS 474 (655)
T ss_pred HHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc-------------------------------------cceeeeeC
Confidence 34555556788999999999999999998887541 13788999
Q ss_pred CCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCC--cccCchhhhhhccCCCCCCccceEE
Q 043190 151 GMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGG--WRDLGMLDIFGRAGRPQFDRSGEGI 228 (1492)
Q Consensus 151 gl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~--~~~~~~~~~~GRAGR~~~d~~G~~i 228 (1492)
++++.+|..+++.|++|.+.|||||+.|++|+|+|.+.+||. +|.+..+ -+..+|+||+|||||.. .|.++
T Consensus 475 ~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~lVvi----~DadifG~p~~~~~~iqriGRagR~~---~G~vi 547 (655)
T TIGR00631 475 EIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARNV---NGKVI 547 (655)
T ss_pred CCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcEEEE----eCcccccCCCCHHHHHHHhcCCCCCC---CCEEE
Confidence 999999999999999999999999999999999999997764 5543322 24567999999999973 69999
Q ss_pred EEeCCccH
Q 043190 229 IITSHDKL 236 (1492)
Q Consensus 229 ~~~~~~~~ 236 (1492)
++++..+.
T Consensus 548 ~~~~~~~~ 555 (655)
T TIGR00631 548 MYADKITD 555 (655)
T ss_pred EEEcCCCH
Confidence 99886543
No 232
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.32 E-value=9.5e-12 Score=125.57 Aligned_cols=105 Identities=33% Similarity=0.477 Sum_probs=90.6
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
.++++||||++...++.++..|.+ ...++.++||+++..+|..+.+
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~ 72 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK----------------------------------PGIKVAALHGDGSQEEREEVLK 72 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh----------------------------------cCCcEEEEECCCCHHHHHHHHH
Confidence 578999999999999988877733 2567899999999999999999
Q ss_pred HHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 996 LFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 996 ~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
.|++|..++|++|+++++|+|+|..++||. ++ .+.+..++.|++||+||.| ..|.++++
T Consensus 73 ~f~~~~~~ili~t~~~~~G~d~~~~~~vi~----~~------~~~~~~~~~Q~~GR~~R~~--~~~~~~~~ 131 (131)
T cd00079 73 DFREGEIVVLVATDVIARGIDLPNVSVVIN----YD------LPWSPSSYLQRIGRAGRAG--QKGTAILL 131 (131)
T ss_pred HHHcCCCcEEEEcChhhcCcChhhCCEEEE----eC------CCCCHHHheecccccccCC--CCceEEeC
Confidence 999999999999999999999999888775 22 3456889999999999988 57877653
No 233
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.32 E-value=3.2e-10 Score=146.32 Aligned_cols=75 Identities=19% Similarity=0.361 Sum_probs=63.1
Q ss_pred hhcCCCCCCHHHHHHHHhh---hcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHHHHH
Q 043190 682 ALYNFSHFNPIQTQIFHIL---YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~~~---~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
..|+|..++|.|.+....+ +..++++++.||||+|||++.+.+.+...... ...+++|.+.|.+=..|..+++++
T Consensus 4 v~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 4 VYFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred eecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 4578998899999977654 35788999999999999999999999876532 237999999999999999888877
No 234
>COG4889 Predicted helicase [General function prediction only]
Probab=99.31 E-value=3.4e-12 Score=150.60 Aligned_cols=339 Identities=16% Similarity=0.236 Sum_probs=179.4
Q ss_pred CCCCHHHHHHHHhhh---cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 687 SHFNPIQTQIFHILY---HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~---~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
..|+|+|.+|+.+++ ..+...=+.+..|+|||+.++- |.+.+. ..++|+++|+.+|..|..++|...- .+.
T Consensus 160 kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala---~~~iL~LvPSIsLLsQTlrew~~~~--~l~ 233 (1518)
T COG4889 160 KKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALA---AARILFLVPSISLLSQTLREWTAQK--ELD 233 (1518)
T ss_pred CCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHh---hhheEeecchHHHHHHHHHHHhhcc--Ccc
Confidence 469999999999875 2344555667789999998754 444444 4899999999999999999998632 224
Q ss_pred CEEEEEcCCCCcch----------------------------hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEe
Q 043190 764 KEMVEMTGDYTPDL----------------------------MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILD 815 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~----------------------------~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViD 815 (1492)
++...+++|..... +...+--|+++|++.+..+-.. ...-+..+++||.|
T Consensus 234 ~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA--Qe~G~~~fDliicD 311 (1518)
T COG4889 234 FRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA--QEAGLDEFDLIICD 311 (1518)
T ss_pred ceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH--HHcCCCCccEEEec
Confidence 44444444322110 0111347999999987544332 23447889999999
Q ss_pred cccccCC-C-CccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcC-CcceeEe------cCCCccc-----
Q 043190 816 EIHLLGA-E-RGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGV-GEIGLFN------FKPSVRP----- 881 (1492)
Q Consensus 816 EaH~l~~-~-~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~-~~~~~~~------~~~~~r~----- 881 (1492)
|||+-.. . .|. =...+.++. ..+.-+..+.+-|+||+.-..+-++--.. ....+.. |.+.+..
T Consensus 312 EAHRTtGa~~a~d-d~saFt~vH--s~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl~Fge 388 (1518)
T COG4889 312 EAHRTTGATLAGD-DKSAFTRVH--SDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRLGFGE 388 (1518)
T ss_pred chhccccceeccc-Ccccceeec--CcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcccHHH
Confidence 9995411 0 000 001111110 00001123446778886322111100000 0000000 0000000
Q ss_pred -------cCcEEEEeccCCcccccccc--------ccChh-------HHHHHhhc--------------CCCCCeeEEec
Q 043190 882 -------VPLEVHIQGYPGKFYCPRMN--------SMNKP-------AYAAICTH--------------SPTKPVLIFVS 925 (1492)
Q Consensus 882 -------~~l~~~~~~~~~~~~~~~~~--------~~~~~-------~~~~l~~~--------------~~~~~~LIF~~ 925 (1492)
....+.+...........+. .+... ++..+... .+..+.+-||.
T Consensus 389 Av~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~RAIaF~k 468 (1518)
T COG4889 389 AVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQRAIAFAK 468 (1518)
T ss_pred HHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHHHHHHHH
Confidence 00111111111110000000 00000 01111110 11235677777
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHH---HhcCCc
Q 043190 926 SRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL---FANNKI 1002 (1492)
Q Consensus 926 s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~---f~~g~~ 1002 (1492)
+.+....++..+.+... .+...++++ ...+...+....|.|+..+|...+.. |...+.
T Consensus 469 ~I~tSK~i~~sFe~Vve-----------------~Y~~Elk~d--~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~nec 529 (1518)
T COG4889 469 DIKTSKQIAESFETVVE-----------------AYDEELKKD--FKNLKISIDHVDGTMNALERLDLLELKNTFEPNEC 529 (1518)
T ss_pred hhHHHHHHHHHHHHHHH-----------------HHHHHHHhc--CCCceEEeecccccccHHHHHHHHhccCCCCcchh
Confidence 77777777665533211 111111111 11223344444578999998555443 456789
Q ss_pred eEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCC-CceEEEE
Q 043190 1003 QVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD-QHGKAVI 1065 (1492)
Q Consensus 1003 ~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~-~~G~~i~ 1065 (1492)
+||---..+++|||+|+.+-||- |+|+. +.-+++|.+||+.|...+ +.|..++
T Consensus 530 kIlSNaRcLSEGVDVPaLDsViF----f~pr~------smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 530 KILSNARCLSEGVDVPALDSVIF----FDPRS------SMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred eeeccchhhhcCCCccccceEEE----ecCch------hHHHHHHHHHHHHHhCcCCccceEEE
Confidence 99999999999999999999984 77765 578999999999996432 2344443
No 235
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.31 E-value=2.3e-12 Score=116.31 Aligned_cols=73 Identities=34% Similarity=0.592 Sum_probs=65.1
Q ss_pred hcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCC
Q 043190 141 FGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQ 220 (1492)
Q Consensus 141 ~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~ 220 (1492)
....++++||++++.+|..+++.|++|..+|||||+.+++|||+|..++||. |++ +++...|.|++||+||.|
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~----~~~---~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF----YDP---PWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE----SSS---ESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc----ccc---CCCHHHHHHHhhcCCCCC
Confidence 3556999999999999999999999999999999999999999999999996 443 345666999999999986
No 236
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.28 E-value=8.5e-11 Score=144.43 Aligned_cols=169 Identities=14% Similarity=0.124 Sum_probs=115.1
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++.|||.|... .+++.+..+.. +. .-+..+|+-....--.+-.. ...+. .. +.+.+.+....|.|+|||
T Consensus 342 kl~GmTGTa~te~~E~~~iY~l~----vv-~IPtnkp~~R~d~~d~i~~t-~~~k~---~a-i~~~i~~~~~~grpvLV~ 411 (745)
T TIGR00963 342 KLSGMTGTAKTEEEEFEKIYNLE----VV-VVPTNRPVIRKDLSDLVYKT-EEEKW---KA-VVDEIKERHAKGQPVLVG 411 (745)
T ss_pred hhhccCCCcHHHHHHHHHHhCCC----EE-EeCCCCCeeeeeCCCeEEcC-HHHHH---HH-HHHHHHHHHhcCCCEEEE
Confidence 57799999865 44455555443 33 33456664322211011111 11111 11 223344444779999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|...++.+++.|.+.. ......||+ +.+|+.....|+.|
T Consensus 412 t~si~~se~ls~~L~~~g-------------------------------------i~~~~Lna~--q~~rEa~ii~~ag~ 452 (745)
T TIGR00963 412 TTSVEKSELLSNLLKERG-------------------------------------IPHNVLNAK--NHEREAEIIAQAGR 452 (745)
T ss_pred eCcHHHHHHHHHHHHHcC-------------------------------------CCeEEeeCC--hHHHHHHHHHhcCC
Confidence 999999999998887532 125677888 88999999999999
Q ss_pred CccEEEeccccccccCCCc-------EEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 168 LLKVLVCTATLAWGVNLPA-------HTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnlp~-------~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
...|+|||+.++||+|++. ..+||. |+... +...+.|+.|||||.| ..|.+..+.+.++
T Consensus 453 ~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~----t~~p~---s~ri~~q~~GRtGRqG--~~G~s~~~ls~eD 518 (745)
T TIGR00963 453 KGAVTIATNMAGRGTDIKLEEVKELGGLYVIG----TERHE---SRRIDNQLRGRSGRQG--DPGSSRFFLSLED 518 (745)
T ss_pred CceEEEEeccccCCcCCCccchhhcCCcEEEe----cCCCC---cHHHHHHHhccccCCC--CCcceEEEEeccH
Confidence 9999999999999999988 447775 32211 3345899999999999 7899999887665
No 237
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.28 E-value=2.3e-11 Score=150.58 Aligned_cols=100 Identities=16% Similarity=0.169 Sum_probs=84.0
Q ss_pred HhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 78 LRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 78 ~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
.+.++++||||++.++++.+++.|.+.. ..+.+.||++++++|
T Consensus 341 ~~~~~~~lV~~~~~~h~~~L~~~L~~~g-------------------------------------~~v~~i~G~~~~~eR 383 (501)
T PHA02558 341 AKKGENTFVMFKYVEHGKPLYEMLKKVY-------------------------------------DKVYYVSGEVDTEDR 383 (501)
T ss_pred HhcCCCEEEEEEEHHHHHHHHHHHHHcC-------------------------------------CCEEEEeCCCCHHHH
Confidence 3567889999999999988888776531 138899999999999
Q ss_pred HHHHHHHhCCCccEEEec-cccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCC
Q 043190 158 GLTERLFSEGLLKVLVCT-ATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQF 221 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT-~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~ 221 (1492)
..+++.|++|...||||| +.+++|+|+|..+.||. ++|.. +...|+||+||+||++.
T Consensus 384 ~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl----~~p~~---s~~~~~QriGR~~R~~~ 441 (501)
T PHA02558 384 NEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF----AHPSK---SKIIVLQSIGRVLRKHG 441 (501)
T ss_pred HHHHHHHhCCCCeEEEEEcceeccccccccccEEEE----ecCCc---chhhhhhhhhccccCCC
Confidence 999999999999999999 89999999999999985 44432 44569999999999873
No 238
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.27 E-value=1.8e-11 Score=154.91 Aligned_cols=120 Identities=21% Similarity=0.315 Sum_probs=98.4
Q ss_pred HHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcC
Q 043190 71 YKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHA 150 (1492)
Q Consensus 71 ~~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hha 150 (1492)
...+....+++.++||||+|++.++.+++.|.+. +..+++.||
T Consensus 436 ~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~-------------------------------------gi~~~~~h~ 478 (652)
T PRK05298 436 LSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKEL-------------------------------------GIKVRYLHS 478 (652)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhc-------------------------------------ceeEEEEEC
Confidence 3445555578899999999999999999888643 123788999
Q ss_pred CCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCC--cccCchhhhhhccCCCCCCccceEE
Q 043190 151 GMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGG--WRDLGMLDIFGRAGRPQFDRSGEGI 228 (1492)
Q Consensus 151 gl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~--~~~~~~~~~~GRAGR~~~d~~G~~i 228 (1492)
++++.+|..+++.|+.|.+.|+|||+.|++|+|+|.+.+||. +|.+..+ -+..+|+||+|||||. ..|.|+
T Consensus 479 ~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lVii----~d~eifG~~~~~~~yiqr~GR~gR~---~~G~~i 551 (652)
T PRK05298 479 DIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARN---VNGKVI 551 (652)
T ss_pred CCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEEEE----eCCcccccCCCHHHHHHHhccccCC---CCCEEE
Confidence 999999999999999999999999999999999999987774 4433222 2455799999999995 479999
Q ss_pred EEeCCc
Q 043190 229 IITSHD 234 (1492)
Q Consensus 229 ~~~~~~ 234 (1492)
++++..
T Consensus 552 ~~~~~~ 557 (652)
T PRK05298 552 LYADKI 557 (652)
T ss_pred EEecCC
Confidence 999853
No 239
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=6.8e-11 Score=146.59 Aligned_cols=250 Identities=14% Similarity=0.136 Sum_probs=148.1
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-|||.|... .+++.+..+.. +. .-+..+|+--...--.+-.. ...+.. .+.+.+.+....+.|+|||
T Consensus 377 kl~GmTGTa~~e~~Ef~~iY~l~----vv-~IPtnkp~~r~d~~d~i~~t-~~~K~~----al~~~i~~~~~~g~pvLI~ 446 (796)
T PRK12906 377 KLSGMTGTAKTEEEEFREIYNME----VI-TIPTNRPVIRKDSPDLLYPT-LDSKFN----AVVKEIKERHAKGQPVLVG 446 (796)
T ss_pred hhhccCCCCHHHHHHHHHHhCCC----EE-EcCCCCCeeeeeCCCeEEcC-HHHHHH----HHHHHHHHHHhCCCCEEEE
Confidence 57789999865 34454444432 33 33455654221110000001 111211 1223333333678999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|+..++.++..|.+.. ......||++...++..|-++++.|
T Consensus 447 t~si~~se~ls~~L~~~g-------------------------------------i~~~~Lna~~~~~Ea~ii~~ag~~g 489 (796)
T PRK12906 447 TVAIESSERLSHLLDEAG-------------------------------------IPHAVLNAKNHAKEAEIIMNAGQRG 489 (796)
T ss_pred eCcHHHHHHHHHHHHHCC-------------------------------------CCeeEecCCcHHHHHHHHHhcCCCc
Confidence 999999999998887542 1266889999999999999999988
Q ss_pred CccEEEeccccccccCCC---cEE-----EEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc-H--
Q 043190 168 LLKVLVCTATLAWGVNLP---AHT-----VVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK-L-- 236 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnlp---~~~-----vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~-~-- 236 (1492)
. |+|||+.++||.|++ .+. +||....+- +...+.|+.|||||.| ..|.+..+++-+| +
T Consensus 490 ~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pe-------s~ri~~Ql~GRtGRqG--~~G~s~~~~sleD~l~~ 558 (796)
T PRK12906 490 A--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHE-------SRRIDNQLRGRSGRQG--DPGSSRFYLSLEDDLMR 558 (796)
T ss_pred e--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCC-------cHHHHHHHhhhhccCC--CCcceEEEEeccchHHH
Confidence 7 999999999999994 667 788522221 2334899999999999 7899999988664 1
Q ss_pred ----HHHHHHh------cCCCccccchhHhHHHHHHHHH------HhCcccCHHHHHHHhhhhhhhhhhccCccccCCCc
Q 043190 237 ----AYYLRLL------TSQLPIESQFISSLKDNLNAEV------ALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGW 300 (1492)
Q Consensus 237 ----~~~~~~~------~~~~~ies~l~~~l~~~l~~ei------~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~ 300 (1492)
+...+++ ....||++.+.....+..-.-+ .....-..++.++.=+...|..|-.-
T Consensus 559 ~f~~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~~aQ~~~e~~~~~~Rk~l~~~d~v~~~QR~~iY~~R~~i--------- 629 (796)
T PRK12906 559 RFGSDRVKAFLDRLGMNDDDQVIESRMITRQVESAQKRVEGNNYDTRKQLLQYDDVMREQREVIYKQRMQV--------- 629 (796)
T ss_pred hhCcHHHHHHHHHcCCCCCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 1233333 2356788876554333321111 12223344555555555555444210
Q ss_pred ccccCCchHHHHHHHHHHHHHHHHHHh
Q 043190 301 DEVIADPSLSLKQRALVTDAARALDKA 327 (1492)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~L~~~ 327 (1492)
+..|..+.....++++.+++.+.+.
T Consensus 630 --l~~~~~l~~~i~~~~~~~i~~~i~~ 654 (796)
T PRK12906 630 --INEDKDLKEVLMPMIKRTVDRQVQM 654 (796)
T ss_pred --HcCCccHHHHHHHHHHHHHHHHHHH
Confidence 1111233444455666666655543
No 240
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.25 E-value=1e-09 Score=134.56 Aligned_cols=361 Identities=17% Similarity=0.207 Sum_probs=198.5
Q ss_pred CCCHHHHHHHHhhhc---------CCCcEEEecCCCCCchHHHHHHHHHHhccCCC-----ceEEEEcccHHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYH---------TDNNVLLGAPTGSGKTISAELAMLHLFNTQSD-----MKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~---------~~~~vli~apTGsGKT~~~~l~il~~l~~~~~-----~~~l~i~P~r~La~q~~~~ 753 (1492)
.++|+|.+.+.-+++ ...-.|++-..|+|||+.....|...+++.+. .+.+||+|. .| ...
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sL----v~n 312 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SL----VNN 312 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HH----HHH
Confidence 489999999987652 12346777788999999988888888888888 899999997 33 456
Q ss_pred HHHHhhhccCC---EEEEEcCCCCcch----------hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEeccccc
Q 043190 754 WKDRLVSQLGK---EMVEMTGDYTPDL----------MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 754 ~~~~~~~~~g~---~v~~~~g~~~~~~----------~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l 820 (1492)
|++.|.++.+. ....+.|...... ...-..-|.+.+.|.+....+. .....++++|+||.|.+
T Consensus 313 WkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~----il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 313 WKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK----ILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH----HhcCCCCeEEECCCCCc
Confidence 77777766542 3333344332200 0111346778888876544443 33568899999999988
Q ss_pred CCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhc---CCcceeEecCCCccccCcEEEEeccCCcccc
Q 043190 821 GAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLG---VGEIGLFNFKPSVRPVPLEVHIQGYPGKFYC 897 (1492)
Q Consensus 821 ~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~---~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~ 897 (1492)
-+.....+.. +.+++ -.|-|++|+|+-. .++.+++. .-.+++..-....+...-.....+... ...
T Consensus 389 kN~~s~~~ka-L~~l~--------t~rRVLLSGTp~Q-Ndl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~-~~s 457 (776)
T KOG0390|consen 389 KNSDSLTLKA-LSSLK--------TPRRVLLTGTPIQ-NDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDA-DAS 457 (776)
T ss_pred cchhhHHHHH-HHhcC--------CCceEEeeCCccc-ccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCC-Ccc
Confidence 5443322222 22221 3455889999732 34444443 222222211111111100000000000 000
Q ss_pred cc-------ccccChhH--------HHHHhhcCCC-CCeeEEecChHHHHHHHHHHHHH----------------H-hcC
Q 043190 898 PR-------MNSMNKPA--------YAAICTHSPT-KPVLIFVSSRRQTRLTALDLIQF----------------A-ASD 944 (1492)
Q Consensus 898 ~~-------~~~~~~~~--------~~~l~~~~~~-~~~LIF~~s~~~~~~~a~~L~~~----------------~-~~~ 944 (1492)
.. ...+..-. -..+..+-|+ .-.+|||+.-..=..+...|.+. + .-.
T Consensus 458 ~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~c 537 (776)
T KOG0390|consen 458 EEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLC 537 (776)
T ss_pred hhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHh
Confidence 00 00000000 0111222233 24677887655444444444332 0 000
Q ss_pred CCCcc------------cCC-----------CC---------hHHHHHHHhhc----C---------------cHHHHHH
Q 043190 945 ETPRQ------------FLG-----------MP---------EEDLQMVLSQV----T---------------DQNLRQT 973 (1492)
Q Consensus 945 ~~~~~------------~~~-----------~~---------~~~~~~~~~~~----~---------------~~~l~~~ 973 (1492)
..|.. +.. .. .-.+...+... . -+.+...
T Consensus 538 nhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~ 617 (776)
T KOG0390|consen 538 NHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW 617 (776)
T ss_pred cCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh
Confidence 01100 000 00 00111111111 0 0244455
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcCCc--e-EEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhc
Q 043190 974 LQFGIGLHHAGLNDKDRSLVEELFANNKI--Q-VLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMG 1050 (1492)
Q Consensus 974 ~~~~v~~~h~~l~~~~R~~v~~~f~~g~~--~-vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~G 1050 (1492)
.++.+..+||.++..+|..+.+.|.+..- . .|.+|-+-+.|+|+-+..-||. ||+ ++.++.=.|.++
T Consensus 618 ~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil----~D~------dWNPa~d~QAma 687 (776)
T KOG0390|consen 618 RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL----FDP------DWNPAVDQQAMA 687 (776)
T ss_pred cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE----eCC------CCCchhHHHHHH
Confidence 58889999999999999999999986432 4 4556667889999998777776 553 345666689999
Q ss_pred ccCCCCCCCceEEEEEecCC--cHHHHHHh
Q 043190 1051 RAGRPQYDQHGKAVILVHEP--KKSFYKKF 1078 (1492)
Q Consensus 1051 RagR~g~~~~G~~i~l~~~~--~~~~~~~~ 1078 (1492)
||-|.|+-+.-.+|.|.... +...|++-
T Consensus 688 R~~RdGQKk~v~iYrLlatGtiEEk~~qrq 717 (776)
T KOG0390|consen 688 RAWRDGQKKPVYIYRLLATGTIEEKIYQRQ 717 (776)
T ss_pred HhccCCCcceEEEEEeecCCCchHHHHHHH
Confidence 99999977777888887654 34444443
No 241
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.24 E-value=1.5e-11 Score=139.31 Aligned_cols=116 Identities=21% Similarity=0.273 Sum_probs=96.6
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
.+.+|||||+...+.+++-.|.... ..--..||.|.+.+|...
T Consensus 463 PGrTlVF~NsId~vKRLt~~L~~L~-------------------------------------i~p~~LHA~M~QKqRLkn 505 (731)
T KOG0347|consen 463 PGRTLVFCNSIDCVKRLTVLLNNLD-------------------------------------IPPLPLHASMIQKQRLKN 505 (731)
T ss_pred CCceEEEechHHHHHHHHHHHhhcC-------------------------------------CCCchhhHHHHHHHHHHh
Confidence 4779999999999888887765421 112245999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
.+.|++..--||+||+++|||+|+|.+..||+ |..+. +..-|+||.||+.|++ ..|.++.++.+.+...|.
T Consensus 506 LEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH----YqVPr---tseiYVHRSGRTARA~--~~Gvsvml~~P~e~~~~~ 576 (731)
T KOG0347|consen 506 LEKFKQSPSGVLIATDVAARGLDIPGVQHVIH----YQVPR---TSEIYVHRSGRTARAN--SEGVSVMLCGPQEVGPLK 576 (731)
T ss_pred HHHHhcCCCeEEEeehhhhccCCCCCcceEEE----eecCC---ccceeEeccccccccc--CCCeEEEEeChHHhHHHH
Confidence 99999999999999999999999999999997 54322 3334999999999999 679999999999987776
Q ss_pred HH
Q 043190 241 RL 242 (1492)
Q Consensus 241 ~~ 242 (1492)
++
T Consensus 577 KL 578 (731)
T KOG0347|consen 577 KL 578 (731)
T ss_pred HH
Confidence 64
No 242
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.22 E-value=3.1e-11 Score=132.84 Aligned_cols=183 Identities=20% Similarity=0.245 Sum_probs=123.9
Q ss_pred CCCCcccEEEEcccCCChHHHHHhcCCCCCCceE-eecCCcccccceE-EEEEeeCCchhHHHHHhhHHHHHHHHHHHhc
Q 043190 3 STQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLF-FFDSSYRPIPLAQ-QYIGISEPNFAARNELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~-~~~~~~rpv~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1492)
+.+...|.+.||||+|+ ++.+|-.+....++. -.+.+.+--+.-+ .+..+.+. .+...+.. ++... ..
T Consensus 191 rl~~~~QTllfSatlp~--~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a---~K~aaLl~----il~~~-~~ 260 (529)
T KOG0337|consen 191 RLPESRQTLLFSATLPR--DLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKA---EKEAALLS----ILGGR-IK 260 (529)
T ss_pred hCCCcceEEEEeccCch--hhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccH---HHHHHHHH----HHhcc-cc
Confidence 34556799999999998 666666554322211 1222222222211 22222211 11111111 11111 22
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
.++++|||.|+..++.+-..+... ..++...++.|++.-|..-
T Consensus 261 ~~~t~vf~~tk~hve~~~~ll~~~-------------------------------------g~~~s~iysslD~~aRk~~ 303 (529)
T KOG0337|consen 261 DKQTIVFVATKHHVEYVRGLLRDF-------------------------------------GGEGSDIYSSLDQEARKIN 303 (529)
T ss_pred ccceeEEecccchHHHHHHHHHhc-------------------------------------CCCccccccccChHhhhhc
Confidence 468999999999998877665542 3346677899999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
...|+.|+-.+||.|+.+|||+|+|-..-||+.+.+-+ +.-|.||+||+.|+| ..|.+|-++..++..+..
T Consensus 304 ~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~-------~klFvhRVgr~arag--rtg~aYs~V~~~~~~yl~ 374 (529)
T KOG0337|consen 304 GRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPD-------DKLFVHRVGRVARAG--RTGRAYSLVASTDDPYLL 374 (529)
T ss_pred cccccCCccceEEEehhhhccCCCccccccccccCCCC-------CceEEEEecchhhcc--ccceEEEEEecccchhhh
Confidence 99999999999999999999999999999998333333 334999999999999 789999999888776655
Q ss_pred H
Q 043190 241 R 241 (1492)
Q Consensus 241 ~ 241 (1492)
.
T Consensus 375 D 375 (529)
T KOG0337|consen 375 D 375 (529)
T ss_pred h
Confidence 4
No 243
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.21 E-value=1.5e-10 Score=137.93 Aligned_cols=179 Identities=20% Similarity=0.296 Sum_probs=122.2
Q ss_pred cccEEEEcccCCChHHHHHhcCCCCCCceEeecC--CcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcE
Q 043190 7 MIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDS--SYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQA 84 (1492)
Q Consensus 7 ~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~--~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1492)
.+-++.|||| |=|..+|=-.-...+ +..++. ..| .|+....+.. .. ..-+++.+.+.+.+|+|+
T Consensus 411 ~Ph~LvMTAT-PIPRTLAlt~fgDld--vS~IdElP~GR-kpI~T~~i~~--~~--------~~~v~e~i~~ei~~GrQa 476 (677)
T COG1200 411 NPHVLVMTAT-PIPRTLALTAFGDLD--VSIIDELPPGR-KPITTVVIPH--ER--------RPEVYERIREEIAKGRQA 476 (677)
T ss_pred CCcEEEEeCC-CchHHHHHHHhcccc--chhhccCCCCC-CceEEEEecc--cc--------HHHHHHHHHHHHHcCCEE
Confidence 5678999999 677777765544322 222222 223 3554443322 11 122345666667899999
Q ss_pred EEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHh-cccEEEEcCCCChhhHHHHHHH
Q 043190 85 MVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELF-GLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 85 lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
.|-|+-..+.+.+--.-... ....|+..+ ...||..||.|+++++..|.+.
T Consensus 477 Y~VcPLIeESE~l~l~~a~~----------------------------~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~ 528 (677)
T COG1200 477 YVVCPLIEESEKLELQAAEE----------------------------LYEELKSFLPELKVGLVHGRMKPAEKDAVMEA 528 (677)
T ss_pred EEEeccccccccchhhhHHH----------------------------HHHHHHHHcccceeEEEecCCChHHHHHHHHH
Confidence 99999877766332110000 001122222 3459999999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
|++|+++|||||++.+.|||+|+.++.| ++|++..+. ....|.-||.||.+ ..+.|++++.++.
T Consensus 529 Fk~~e~~ILVaTTVIEVGVdVPnATvMV----Ie~AERFGL--aQLHQLRGRVGRG~--~qSyC~Ll~~~~~ 592 (677)
T COG1200 529 FKEGEIDILVATTVIEVGVDVPNATVMV----IENAERFGL--AQLHQLRGRVGRGD--LQSYCVLLYKPPL 592 (677)
T ss_pred HHcCCCcEEEEeeEEEecccCCCCeEEE----EechhhhhH--HHHHHhccccCCCC--cceEEEEEeCCCC
Confidence 9999999999999999999999999887 477766442 23456889999987 6799999998765
No 244
>PRK09694 helicase Cas3; Provisional
Probab=99.21 E-value=3.3e-10 Score=144.81 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEc
Q 043190 70 CYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHH 149 (1492)
Q Consensus 70 ~~~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hh 149 (1492)
+.+.+.+.+.+++++||||||++.++.+++.|.+.... ...+..+|
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~----------------------------------~~~v~llH 594 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNT----------------------------------QVDIDLFH 594 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCC----------------------------------CceEEEEe
Confidence 34455566678899999999999999999988753210 11388999
Q ss_pred CCCChhhHHH----HHHHH-hCCC---ccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCC
Q 043190 150 AGMLRSDRGL----TERLF-SEGL---LKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQF 221 (1492)
Q Consensus 150 agl~~~~R~~----ve~~f-~~g~---i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~ 221 (1492)
|.+++.+|.. +.+.| ++|+ .+|||||.++++|||++. +++|...-+ ..+++||+||+||.+.
T Consensus 595 srf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId~-DvlItdlaP---------idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 595 ARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLDF-DWLITQLCP---------VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecCC-CeEEECCCC---------HHHHHHHHhccCCCCC
Confidence 9999999954 45567 7776 479999999999999975 677753221 1259999999999986
No 245
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.21 E-value=1.4e-10 Score=141.96 Aligned_cols=213 Identities=19% Similarity=0.194 Sum_probs=120.1
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecC--CcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDS--SYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~--~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
.+.++|++||| |..+.+....... -....... ..++.|- ..++...... ....+...+++.+.+.++.++|
T Consensus 128 ~~~~vil~SAT-Psles~~~~~~g~--~~~~~l~~r~~~~~~p~-v~vid~~~~~---~~~~ls~~l~~~i~~~l~~g~q 200 (505)
T TIGR00595 128 FNCPVVLGSAT-PSLESYHNAKQKA--YRLLVLTRRVSGRKPPE-VKLIDMRKEP---RQSFLSPELITAIEQTLAAGEQ 200 (505)
T ss_pred cCCCEEEEeCC-CCHHHHHHHhcCC--eEEeechhhhcCCCCCe-EEEEeccccc---ccCCccHHHHHHHHHHHHcCCc
Confidence 46899999999 7887776654332 01111111 1122222 2232222111 1123445566778888899999
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCcc---------------------ccC--CC--Cchh-------hHHHHHHHhh
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLE---------------------VFN--ND--THPQ-------LSLIKKDVMK 131 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~---------------------~~~--~~--~~~~-------~~~~~~~~~~ 131 (1492)
+|||+|+|.-+-.+.=.=+......+..+ .+. .+ .... .+.+
T Consensus 201 vLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~------ 274 (505)
T TIGR00595 201 SILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQV------ 274 (505)
T ss_pred EEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHH------
Confidence 99999998643211000000000000000 000 00 0000 0111
Q ss_pred cCchHHHHHhc-ccEEEEcCCCChhhH--HHHHHHHhCCCccEEEeccccccccCCCcEEEEE--eccce-ecCCCCC--
Q 043190 132 SRNKDLIELFG-LAVGVHHAGMLRSDR--GLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVI--KGTQL-YDPKAGG-- 203 (1492)
Q Consensus 132 ~~~~~l~~~~~-~gv~~hhagl~~~~R--~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI--~~~~~-~~~~~~~-- 203 (1492)
.+.|.+.+. ..|...|++++...+ +.+.+.|++|+.+|||+|..+++|+|+|.++.|+ +.+.. +.|+-..
T Consensus 275 --~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E 352 (505)
T TIGR00595 275 --EEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAE 352 (505)
T ss_pred --HHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHH
Confidence 134444443 468889999988776 8999999999999999999999999999988653 32211 1111000
Q ss_pred cccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 204 WRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 204 ~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
..-..+.|++|||||.+ ..|.+++.+...+
T Consensus 353 ~~~~ll~q~~GRagR~~--~~g~viiqt~~p~ 382 (505)
T TIGR00595 353 RGFQLLTQVAGRAGRAE--DPGQVIIQTYNPN 382 (505)
T ss_pred HHHHHHHHHHhccCCCC--CCCEEEEEeCCCC
Confidence 01123688999999987 6799998876554
No 246
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.20 E-value=1.4e-10 Score=128.47 Aligned_cols=179 Identities=16% Similarity=0.210 Sum_probs=127.9
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCccc--ccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRP--IPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR 79 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rp--v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1492)
..|+..|.++||||+.+ ...+.+.+..+ |.-+ .+....-| -.|.++++.+.+.+. .. ++|. +.+.--
T Consensus 197 ~LPr~~Q~~LmSATl~dDv~~LKkL~l~n-PviL-kl~e~el~~~dqL~Qy~v~cse~DK---fl----llya-llKL~L 266 (569)
T KOG0346|consen 197 HLPRIYQCFLMSATLSDDVQALKKLFLHN-PVIL-KLTEGELPNPDQLTQYQVKCSEEDK---FL----LLYA-LLKLRL 266 (569)
T ss_pred hCCchhhheeehhhhhhHHHHHHHHhccC-CeEE-EeccccCCCcccceEEEEEeccchh---HH----HHHH-HHHHHH
Confidence 46788999999999986 55566666555 3222 23333333 457666666653321 11 1121 111111
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
-.+.+||||||...|-++--.|...+. .-++.++.||..-|.-
T Consensus 267 I~gKsliFVNtIdr~YrLkLfLeqFGi-------------------------------------ksciLNseLP~NSR~H 309 (569)
T KOG0346|consen 267 IRGKSLIFVNTIDRCYRLKLFLEQFGI-------------------------------------KSCILNSELPANSRCH 309 (569)
T ss_pred hcCceEEEEechhhhHHHHHHHHHhCc-------------------------------------Hhhhhcccccccchhh
Confidence 246799999999999888766644321 2456799999999999
Q ss_pred HHHHHhCCCccEEEecc-----------------------------------ccccccCCCcEEEEEeccceecCCCCCc
Q 043190 160 TERLFSEGLLKVLVCTA-----------------------------------TLAWGVNLPAHTVVIKGTQLYDPKAGGW 204 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~-----------------------------------tla~Gvnlp~~~vVI~~~~~~~~~~~~~ 204 (1492)
|.+.|-.|..++++||+ -.+||||+-.+..|++ ||-+.
T Consensus 310 ii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN----FD~P~--- 382 (569)
T KOG0346|consen 310 IIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN----FDFPE--- 382 (569)
T ss_pred HHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee----cCCCC---
Confidence 99999999999999999 2579999999999998 55332
Q ss_pred ccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 205 RDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 205 ~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
+.-+|+||+||+||.+ ..|.++-++.+.+..
T Consensus 383 t~~sYIHRvGRTaRg~--n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 383 TVTSYIHRVGRTARGN--NKGTALSFVSPKEEF 413 (569)
T ss_pred chHHHHHhccccccCC--CCCceEEEecchHHh
Confidence 5667999999999998 789999999877643
No 247
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.15 E-value=2.6e-10 Score=146.58 Aligned_cols=106 Identities=19% Similarity=0.263 Sum_probs=86.9
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
+.++||||+++..+..+++.|.+.. +..++..||||++.+|..+
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~------------------------------------Gi~~~~ihG~~s~~eR~~~ 536 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALRERE------------------------------------GIRAAVFHEGMSIIERDRA 536 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhcc------------------------------------CeeEEEEECCCCHHHHHHH
Confidence 6789999999999999988875321 2236778999999999999
Q ss_pred HHHHhCC--CccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEe
Q 043190 161 ERLFSEG--LLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 161 e~~f~~g--~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
.+.|+++ ..+|||||+++++|+|++..+.||+ ||. +|++..|.||+||+||.| ..|.+.+.+
T Consensus 537 ~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VIn----fDl---P~nP~~~eQRIGR~~RiG--Q~~~V~i~~ 600 (956)
T PRK04914 537 AAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVL----FDL---PFNPDLLEQRIGRLDRIG--QKHDIQIHV 600 (956)
T ss_pred HHHHhcCCCCccEEEechhhccCCCcccccEEEE----ecC---CCCHHHHHHHhcccccCC--CCceEEEEE
Confidence 9999984 6999999999999999999999997 543 345556999999999999 556554443
No 248
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.13 E-value=4.5e-09 Score=118.14 Aligned_cols=150 Identities=20% Similarity=0.238 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC--E
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK--E 765 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~--~ 765 (1492)
.+-|+|++.+...++.|..+++.-..|-|||+.++ +|....+. ....++++|..-. ..|.+.+..+++. .
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAl-aIA~yyra--EwplliVcPAsvr-----ftWa~al~r~lps~~p 269 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQAL-AIARYYRA--EWPLLIVCPASVR-----FTWAKALNRFLPSIHP 269 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHH-HHHHHHhh--cCcEEEEecHHHh-----HHHHHHHHHhcccccc
Confidence 47799999999888899999999999999999875 45554443 5778999997432 2344444443321 2
Q ss_pred EEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCc
Q 043190 766 MVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERA 845 (1492)
Q Consensus 766 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~ 845 (1492)
+..+.+..+.-........|.|.+++.+..+-.... -..++++|+||.|++.+.+......++.-++ ..
T Consensus 270 i~vv~~~~D~~~~~~t~~~v~ivSye~ls~l~~~l~----~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk-------~a 338 (689)
T KOG1000|consen 270 IFVVDKSSDPLPDVCTSNTVAIVSYEQLSLLHDILK----KEKYRVVIFDESHMLKDSKTKRTKAATDLLK-------VA 338 (689)
T ss_pred eEEEecccCCccccccCCeEEEEEHHHHHHHHHHHh----cccceEEEEechhhhhccchhhhhhhhhHHH-------Hh
Confidence 333333322211112245788999987754333211 2358899999999996654444444444333 24
Q ss_pred eEEEEEcCCCC
Q 043190 846 VRFIGLSTALA 856 (1492)
Q Consensus 846 ~~ii~lSATl~ 856 (1492)
.++|++|.|+.
T Consensus 339 khvILLSGTPa 349 (689)
T KOG1000|consen 339 KHVILLSGTPA 349 (689)
T ss_pred hheEEecCCcc
Confidence 57899999974
No 249
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.10 E-value=3e-10 Score=124.70 Aligned_cols=110 Identities=20% Similarity=0.298 Sum_probs=92.1
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
-.++||||.|+.+|..+-+.+.+.... .+.+...|++.-|.+|+.-
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~----------------------------------~~scvclhgDrkP~Erk~n 550 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGK----------------------------------HYSCVCLHGDRKPDERKAN 550 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCc----------------------------------cceeEEEecCCChhHHHHH
Confidence 458999999999999998888765321 2236678999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCC
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~ 233 (1492)
.+.|+.+.++.|+||+++|||+|+-..-++|+-|-+-|. ..|.||+||.||+. +-|.||-++..
T Consensus 551 le~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k-------~nyvhrigrvgrae--rmglaislvat 614 (725)
T KOG0349|consen 551 LESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDK-------TNYVHRIGRVGRAE--RMGLAISLVAT 614 (725)
T ss_pred HHhhhhcCeEEEEEehhhhccccccCCceEEEEecCccc-------chhhhhhhccchhh--hcceeEEEeec
Confidence 999999999999999999999999999999987665332 23999999999987 66999877643
No 250
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.10 E-value=9.5e-10 Score=140.01 Aligned_cols=99 Identities=25% Similarity=0.261 Sum_probs=71.1
Q ss_pred HHHHHhc-ccEEEEcCCCC--hhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEE--eccceec-CCCCC--cccC
Q 043190 136 DLIELFG-LAVGVHHAGML--RSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVI--KGTQLYD-PKAGG--WRDL 207 (1492)
Q Consensus 136 ~l~~~~~-~gv~~hhagl~--~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI--~~~~~~~-~~~~~--~~~~ 207 (1492)
.|.+.+. ..|...|+++. +++|+.+.+.|++|+.+|||+|..+++|+|+|.+++|+ +....-+ |+-+. -.-.
T Consensus 445 ~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~ 524 (679)
T PRK05580 445 ELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQ 524 (679)
T ss_pred HHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHH
Confidence 3444443 46888899987 46799999999999999999999999999999998664 2111111 10000 0112
Q ss_pred chhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 208 GMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 208 ~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
.+.|++|||||.+ ..|.+++.+...+-
T Consensus 525 ~l~q~~GRagR~~--~~g~viiqT~~p~~ 551 (679)
T PRK05580 525 LLTQVAGRAGRAE--KPGEVLIQTYHPEH 551 (679)
T ss_pred HHHHHHhhccCCC--CCCEEEEEeCCCCC
Confidence 3788999999987 67999999876553
No 251
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=9e-10 Score=137.18 Aligned_cols=169 Identities=16% Similarity=0.132 Sum_probs=109.1
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-||+.|... ..+|.+..+. +++ .-+..||+--...--.+-.. ...+... +.+.+.+....+.|+|||
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~L----~Vv-~IPTnrP~~R~D~~d~vy~t-~~eK~~A----li~~I~~~~~~grpVLIf 604 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYKL----DVV-VIPTNKPIVRKDMDDLVYKT-RREKYNA----IVLKVEELQKKGQPVLVG 604 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhCC----cEE-ECCCCCCcceecCCCeEecC-HHHHHHH----HHHHHHHHhhCCCCEEEE
Confidence 46688888754 4444444433 233 33456664332210000011 1112111 223333333678999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|+..++.+++.|..... ...+.|| .+.+|+....+|+.+
T Consensus 605 t~Sve~sE~Ls~~L~~~gI-------------------------------------~h~vLna--kq~~REa~Iia~AG~ 645 (1025)
T PRK12900 605 TASVEVSETLSRMLRAKRI-------------------------------------AHNVLNA--KQHDREAEIVAEAGQ 645 (1025)
T ss_pred eCcHHHHHHHHHHHHHcCC-------------------------------------CceeecC--CHHHhHHHHHHhcCC
Confidence 9999999999988875421 1456676 588999999999999
Q ss_pred CccEEEeccccccccCCCcEE--------EEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 168 LLKVLVCTATLAWGVNLPAHT--------VVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnlp~~~--------vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
...|+|||+.++||+|++-.. +||....+. +..-+.|+.|||||.| ..|.++.+++.++
T Consensus 646 ~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhe-------s~Rid~Ql~GRtGRqG--dpGsS~ffvSleD 712 (1025)
T PRK12900 646 KGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHE-------SRRIDRQLRGRAGRQG--DPGESVFYVSLED 712 (1025)
T ss_pred CCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCc-------hHHHHHHHhhhhhcCC--CCcceEEEechhH
Confidence 999999999999999998322 234211111 2233899999999999 8899999998755
No 252
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.09 E-value=4.8e-10 Score=135.75 Aligned_cols=120 Identities=23% Similarity=0.423 Sum_probs=93.1
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+..++||||.+|..+..+-+.|.+...-.-....| ++.|-+---.||++.++..
T Consensus 412 ~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~f--------------------------iGq~~s~~~~gmtqk~Q~e 465 (746)
T KOG0354|consen 412 PDSRTIIFVETRESALALKKWLLQLHELGIKAEIF--------------------------IGQGKSTQSTGMTQKEQKE 465 (746)
T ss_pred CCccEEEEEehHHHHHHHHHHHHhhhhccccccee--------------------------eeccccccccccCHHHHHH
Confidence 34679999999999999888887522111111122 2223333347999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
+.+.|++|.++||||||+++.|+|+|..++||. ||... +++..+||.|| ||+ +.|+++++++..+.
T Consensus 466 vl~~Fr~G~~NvLVATSV~EEGLDI~ec~lVIc----Yd~~s---npIrmIQrrGR-gRa---~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 466 VLDKFRDGEINVLVATSVAEEGLDIGECNLVIC----YDYSS---NPIRMVQRRGR-GRA---RNSKCVLLTTGSEV 531 (746)
T ss_pred HHHHHhCCCccEEEEecchhccCCcccccEEEE----ecCCc---cHHHHHHHhcc-ccc---cCCeEEEEEcchhH
Confidence 999999999999999999999999999999997 88654 46778899999 997 57999999985443
No 253
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.08 E-value=5e-09 Score=130.49 Aligned_cols=125 Identities=19% Similarity=0.134 Sum_probs=81.4
Q ss_pred CCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE
Q 043190 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE 768 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~ 768 (1492)
++++|.-.--.+ +. --|..+.||-|||+++.+|+.-.... |..+-+++..--||..=++.+.. +-.++|++|++
T Consensus 170 ~yDVQliGgivL-h~--G~IAEM~TGEGKTLvAtlp~yLnAL~--GkgVHvVTVNDYLA~RDaewmgp-ly~fLGLsvg~ 243 (1112)
T PRK12901 170 HYDVQLIGGVVL-HQ--GKIAEMATGEGKTLVATLPVYLNALT--GNGVHVVTVNDYLAKRDSEWMGP-LYEFHGLSVDC 243 (1112)
T ss_pred ccchHHhhhhhh-cC--CceeeecCCCCchhHHHHHHHHHHHc--CCCcEEEEechhhhhccHHHHHH-HHHHhCCceee
Confidence 455664433333 23 34789999999999999998765554 55666667777777655554443 44556999998
Q ss_pred EcC-CCCcc-hhccCCCcEEEECchhh--hHhhhccc---CccccCcccEEEEecccc
Q 043190 769 MTG-DYTPD-LMALLSADIIISTPEKW--DGISRNWH---SRNYVKKVGLMILDEIHL 819 (1492)
Q Consensus 769 ~~g-~~~~~-~~~~~~~~Iiv~Tpe~l--~~l~~~~~---~~~~l~~i~liViDEaH~ 819 (1492)
... +.... .+..-.+||.++|..-| +.|-.+.. .....+.+.+.||||+|.
T Consensus 244 i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDS 301 (1112)
T PRK12901 244 IDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDS 301 (1112)
T ss_pred cCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhh
Confidence 865 33333 33445789999998774 33332221 123446688999999994
No 254
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.04 E-value=1.7e-09 Score=134.17 Aligned_cols=319 Identities=20% Similarity=0.253 Sum_probs=186.9
Q ss_pred CCCCHHHHHHHHhhh---cCCCcEEEecCCCCCchHHHHH---HHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 687 SHFNPIQTQIFHILY---HTDNNVLLGAPTGSGKTISAEL---AMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~---~~~~~vli~apTGsGKT~~~~l---~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
.+++.+|.+.++-++ ..++|+|+.-.-|-|||+.-.- .++.... -.+..|+++|.-.+. .|.+.|..
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~--~~gpflvvvplst~~-----~W~~ef~~ 441 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQ--IHGPFLVVVPLSTIT-----AWEREFET 441 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhh--ccCCeEEEeehhhhH-----HHHHHHHH
Confidence 568999999776443 2678999999999999975433 3333322 257789999986644 47777777
Q ss_pred ccCCEEEEEcCCCCcch------------hccCCCcEEEECchhhhHhhhcccCccccCc--ccEEEEecccccCCCCcc
Q 043190 761 QLGKEMVEMTGDYTPDL------------MALLSADIIISTPEKWDGISRNWHSRNYVKK--VGLMILDEIHLLGAERGP 826 (1492)
Q Consensus 761 ~~g~~v~~~~g~~~~~~------------~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~--i~liViDEaH~l~~~~g~ 826 (1492)
+...++.+++|+..... ....+.+++++|.|.+. . ....|+. ..+++|||||.|...-..
T Consensus 442 w~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~L---k---Dk~~L~~i~w~~~~vDeahrLkN~~~~ 515 (1373)
T KOG0384|consen 442 WTDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVL---K---DKAELSKIPWRYLLVDEAHRLKNDESK 515 (1373)
T ss_pred HhhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHh---c---cHhhhccCCcceeeecHHhhcCchHHH
Confidence 77889999999764321 11125799999999642 2 2223443 468999999999644333
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCC-CC-hHHHHHHhcCCcceeEecCC----C---------------ccccCc-
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTAL-AN-AGDLADWLGVGEIGLFNFKP----S---------------VRPVPL- 884 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl-~~-~~~~~~~l~~~~~~~~~~~~----~---------------~r~~~l- 884 (1492)
.++. +..++ ..-| ++++.|+ .| .+++...++...+.-|.... . .+|.-+
T Consensus 516 l~~~-l~~f~-------~~~r-llitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lR 586 (1373)
T KOG0384|consen 516 LYES-LNQFK-------MNHR-LLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLR 586 (1373)
T ss_pred HHHH-HHHhc-------ccce-eeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHH
Confidence 3443 22222 2334 5666665 32 56666555432221111000 0 000000
Q ss_pred ------EEEEeccCCccccccccccChhHHHHHhh---------------------------------------------
Q 043190 885 ------EVHIQGYPGKFYCPRMNSMNKPAYAAICT--------------------------------------------- 913 (1492)
Q Consensus 885 ------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------------------------------------- 913 (1492)
+..+..-........+..+.+.-|..|..
T Consensus 587 r~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~ 666 (1373)
T KOG0384|consen 587 RLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDF 666 (1373)
T ss_pred HHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhh
Confidence 00000000000000011111111111110
Q ss_pred -----------------------------cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhh
Q 043190 914 -----------------------------HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQ 964 (1492)
Q Consensus 914 -----------------------------~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 964 (1492)
...+.+||||..-.+...-++.+|
T Consensus 667 ~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL--------------------------- 719 (1373)
T KOG0384|consen 667 RDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYL--------------------------- 719 (1373)
T ss_pred hhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHH---------------------------
Confidence 122345555544333333333333
Q ss_pred cCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc---CCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCC
Q 043190 965 VTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN---NKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFP 1041 (1492)
Q Consensus 965 ~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~---g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~ 1041 (1492)
..-++..--+-|+...+-|+..++.|.. ...-.|+||.+.+-|||+-..+.||. || .|..
T Consensus 720 -------~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII----FD------SDWN 782 (1373)
T KOG0384|consen 720 -------SLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII----FD------SDWN 782 (1373)
T ss_pred -------HHcCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE----eC------CCCC
Confidence 2225566677899999999999999975 35668999999999999997766665 45 2334
Q ss_pred HHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1042 ITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1042 ~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+..=+|...||.|-|..+.-.+|.|++.+.
T Consensus 783 PQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 783 PQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred cchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 455579999999999888889999998765
No 255
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.03 E-value=6.4e-09 Score=131.35 Aligned_cols=177 Identities=19% Similarity=0.265 Sum_probs=123.6
Q ss_pred CCCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 3 STQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
+...++-++-|||| |=|..+---+..-.+-.+.. .+..+..|+..++.... ...+.+.+...+..|+
T Consensus 738 ~Lr~~VDvLTLSAT-PIPRTL~Msm~GiRdlSvI~-TPP~~R~pV~T~V~~~d-----------~~~ireAI~REl~RgG 804 (1139)
T COG1197 738 ELRANVDVLTLSAT-PIPRTLNMSLSGIRDLSVIA-TPPEDRLPVKTFVSEYD-----------DLLIREAILRELLRGG 804 (1139)
T ss_pred HHhccCcEEEeeCC-CCcchHHHHHhcchhhhhcc-CCCCCCcceEEEEecCC-----------hHHHHHHHHHHHhcCC
Confidence 45678889999999 55555433332211111111 12223345544332222 2234456666678899
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
|+-.-+|.-++.++.+..|.+..++ ..|++-||-|+..+=+.|..
T Consensus 805 QvfYv~NrV~~Ie~~~~~L~~LVPE-----------------------------------arI~vaHGQM~e~eLE~vM~ 849 (1139)
T COG1197 805 QVFYVHNRVESIEKKAERLRELVPE-----------------------------------ARIAVAHGQMRERELEEVML 849 (1139)
T ss_pred EEEEEecchhhHHHHHHHHHHhCCc-----------------------------------eEEEEeecCCCHHHHHHHHH
Confidence 9988888889999999999877543 23999999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.|-+|+..|||||++.+.|||+|..+.+| +.+++..+ -....|+-||.||.. ..|+|++++.+.+
T Consensus 850 ~F~~g~~dVLv~TTIIEtGIDIPnANTiI----Ie~AD~fG--LsQLyQLRGRVGRS~--~~AYAYfl~p~~k 914 (1139)
T COG1197 850 DFYNGEYDVLVCTTIIETGIDIPNANTII----IERADKFG--LAQLYQLRGRVGRSN--KQAYAYFLYPPQK 914 (1139)
T ss_pred HHHcCCCCEEEEeeeeecCcCCCCCceEE----Eecccccc--HHHHHHhccccCCcc--ceEEEEEeecCcc
Confidence 99999999999999999999999765544 13332222 223577999999987 7899999998654
No 256
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.02 E-value=1.3e-09 Score=123.39 Aligned_cols=192 Identities=14% Similarity=0.109 Sum_probs=132.1
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEee---CCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGIS---EPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
..++|++-.|||+-++-...+-+..- .++-.+..+..|..-...++.-+ +....++...+.+.. ..+.+.+..+
T Consensus 449 ~~~~~~~~~~~~~K~~~~~~~~~~~~--~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s-~~~~~~i~~~ 525 (1034)
T KOG4150|consen 449 SINMGVYDGDTPYKDRTRLRSELANL--SELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVS-HLFAEMVQHG 525 (1034)
T ss_pred hcCcceEeCCCCcCCHHHHHHHhcCC--cceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHH-HHHHHHHHcC
Confidence 35789999999998866555444332 23445666777766654444433 222233333333332 2455666788
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
-.+|-||.+|+-|+.+....++...+.+ +.|.+ .|.-+.||.+.++|+.||
T Consensus 526 ~R~IAFC~~R~~CEL~~~~~R~I~~ET~-------------------------~~LV~----~i~SYRGGY~A~DRRKIE 576 (1034)
T KOG4150|consen 526 LRCIAFCPSRKLCELVLCLTREILAETA-------------------------PHLVE----AITSYRGGYIAEDRRKIE 576 (1034)
T ss_pred CcEEEeccHHHHHHHHHHHHHHHHHHhh-------------------------HHHHH----HHHhhcCccchhhHHHHH
Confidence 8999999999999988766655443311 11111 245678999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
..+-.|++.-++||+.|+.|||+...+.|+.--. +++...+.|.+|||||... ...++.++...-.+
T Consensus 577 ~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GF-------P~S~aNl~QQ~GRAGRRNk--~SLavyva~~~PVD 643 (1034)
T KOG4150|consen 577 SDLFGGKLCGIIATNALELGIDIGHLDAVLHLGF-------PGSIANLWQQAGRAGRRNK--PSLAVYVAFLGPVD 643 (1034)
T ss_pred HHhhCCeeeEEEecchhhhccccccceeEEEccC-------chhHHHHHHHhccccccCC--CceEEEEEeccchh
Confidence 9999999999999999999999999999986333 3355568999999999984 46666665544443
No 257
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.01 E-value=4.5e-09 Score=101.75 Aligned_cols=135 Identities=16% Similarity=0.197 Sum_probs=80.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHH-HhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLH-LFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~-~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
.++-.++-..+|+|||.-.+--+++ .+.+ +.++|++.|||.++.++.+.++ |..+..-+.-... ....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~--~~rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~~--~~~g 71 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR--RLRVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARMR--THFG 71 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT--T--EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS------S
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc--cCeEEEecccHHHHHHHHHHHh-------cCCcccCceeeec--cccC
Confidence 4667789999999999966555554 4443 8999999999999998877653 2233332222211 2234
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
+.-|-++|...+...+.+ .....++++||+||+|..+.. --.....++.... ....++|.||||+|-
T Consensus 72 ~~~i~vMc~at~~~~~~~---p~~~~~yd~II~DEcH~~Dp~----sIA~rg~l~~~~~--~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 72 SSIIDVMCHATYGHFLLN---PCRLKNYDVIIMDECHFTDPT----SIAARGYLRELAE--SGEAKVIFMTATPPG 138 (148)
T ss_dssp SSSEEEEEHHHHHHHHHT---SSCTTS-SEEEECTTT--SHH----HHHHHHHHHHHHH--TTS-EEEEEESS-TT
T ss_pred CCcccccccHHHHHHhcC---cccccCccEEEEeccccCCHH----HHhhheeHHHhhh--ccCeeEEEEeCCCCC
Confidence 567888998877665544 233679999999999976421 1122333333332 235789999999875
No 258
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.00 E-value=1.5e-09 Score=134.71 Aligned_cols=111 Identities=17% Similarity=0.198 Sum_probs=87.5
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.+.++||||.+...+..+++.| |+.+.||++++.+|..
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L------------------------------------------~~~~I~G~ts~~ER~~ 532 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKL------------------------------------------GKPFIYGPTSQQERMQ 532 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHc------------------------------------------CCceEECCCCHHHHHH
Confidence 6789999999988776666543 2456799999999999
Q ss_pred HHHHHhCC-CccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceE-------EEEe
Q 043190 160 TERLFSEG-LLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEG-------IIIT 231 (1492)
Q Consensus 160 ve~~f~~g-~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~-------i~~~ 231 (1492)
+.+.|++| .+++||+|..+..|||+|..++||. +++..+ +...+.||+||++|++.+ |.+ |.++
T Consensus 533 il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~----~s~~~g--S~~q~iQRlGRilR~~~~--~~~~~~~A~fY~lV 604 (732)
T TIGR00603 533 ILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQ----ISSHYG--SRRQEAQRLGRILRAKKG--SDAEEYNAFFYSLV 604 (732)
T ss_pred HHHHHHhCCCccEEEEecccccccCCCCCCEEEE----eCCCCC--CHHHHHHHhcccccCCCC--CccccccceEEEEe
Confidence 99999975 8899999999999999999999995 443211 455699999999999843 443 7777
Q ss_pred CCccHHHHH
Q 043190 232 SHDKLAYYL 240 (1492)
Q Consensus 232 ~~~~~~~~~ 240 (1492)
+.+..+.+.
T Consensus 605 s~dT~E~~~ 613 (732)
T TIGR00603 605 SKDTQEMYY 613 (732)
T ss_pred cCCchHHHH
Confidence 776655443
No 259
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.00 E-value=2.4e-09 Score=118.32 Aligned_cols=167 Identities=12% Similarity=0.148 Sum_probs=143.5
Q ss_pred cchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHHHHHHhcCCcccccCCCCChhHHHHHHHHHHHcCCC
Q 043190 353 IQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVKGGPSNKHGKISILIQLYISRGW 432 (1492)
Q Consensus 353 i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~~Llqa~i~~~~ 432 (1492)
|.+.||.+|.+.+....+.+++|.+++.|+||..+. | +.+..-...||++||+|..
T Consensus 227 vh~vT~~~f~~~~~~SlTlDelLslfasskElt~~~-----------------p-------k~pk~~~ekll~dhlnr~~ 282 (610)
T COG5407 227 VHFVTMEMFYERIDGSLTLDELLSLFASSKELTRMN-----------------P-------KGPKCTLEKLLGDHLNRAR 282 (610)
T ss_pred eeeeeHHHHHHhhcccchHHHHHHHHhhhHHHHHhC-----------------C-------CCCchhHHHHHHHHHhHhh
Confidence 678899999999998899999999999999996552 1 1223335678999999987
Q ss_pred CCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCC-cccccccccCCHHHHHHHHHcCC-
Q 043190 433 IDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQ-HPLRQFDKELPAEILRKLEERGA- 510 (1492)
Q Consensus 433 ~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~-~~L~Ql~~~i~~~~~~~l~~~~~- 510 (1492)
-..++ ..+|..++.-++.|+++|+..++++..+.+.+...|||.|++.-+. -+++|+| +...+.++.+.-+.|
T Consensus 283 s~~fn----~~ri~s~~~~ll~aLL~ia~~F~f~~~~~g~~n~~q~iVqAiPld~~f~ilQlp-~~d~E~~~~~s~r~I~ 357 (610)
T COG5407 283 SVEFN----EYRIKSNVEGLLGALLRIASNFAFPLKECGKENKGQYIVQAIPLDHLFRILQLP-RSDVEYAQRVSLRLIE 357 (610)
T ss_pred cccch----heehhhhhHHHHHHHHHHHhhccCCchhhccchhhheeeEeccCCCCchhhccc-chhHHHHHHhhhhhhh
Confidence 65554 6789999999999999999999999999999999999999998774 6999999 889888888877778
Q ss_pred ChhHHhhCCHHHHHHHhc--CCchHHHHHHHhccCCceeE
Q 043190 511 DLDRLQEMEEKDIGALIR--YTPGGRLVKQYLGYFPSIQL 548 (1492)
Q Consensus 511 ~~~~l~~~~~~~~~~l~~--~~~~~~~i~~~~~~~P~~~i 548 (1492)
++.++..+.+++.++.++ .....+++.+.++++|++.+
T Consensus 358 ~~~~~~sL~~~~~g~vl~n~~~~~l~e~~~va~gIPr~~~ 397 (610)
T COG5407 358 GMKAIGSLIAKRYGNVLKNLVVLELMEIQAVADGIPRYFL 397 (610)
T ss_pred hhhhHhhHHHHHHhhhhhhHHHHHHHHHHHHhcCCCceEE
Confidence 899999999999999998 45678899999999999987
No 260
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.99 E-value=1.2e-09 Score=99.81 Aligned_cols=72 Identities=35% Similarity=0.583 Sum_probs=64.7
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCC
Q 043190 975 QFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGR 1054 (1492)
Q Consensus 975 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR 1054 (1492)
+..+..+||+++.++|..+++.|.+|...|||+|+++++|+|+|.+..||. ++ .+++..+|.|++||++|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~----~~------~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII----YD------LPWSPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE----eC------CCCCHHHHHHhhccccc
Confidence 678999999999999999999999999999999999999999998888875 33 24478999999999999
Q ss_pred CC
Q 043190 1055 PQ 1056 (1492)
Q Consensus 1055 ~g 1056 (1492)
.|
T Consensus 81 ~g 82 (82)
T smart00490 81 AG 82 (82)
T ss_pred CC
Confidence 64
No 261
>PRK14701 reverse gyrase; Provisional
Probab=98.99 E-value=1.1e-09 Score=148.29 Aligned_cols=178 Identities=18% Similarity=0.242 Sum_probs=106.7
Q ss_pred CCccc-EEEEcccCCChHHHHHhcCCCCCCceEeecCCcccc--cceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 5 QRMIR-IVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPI--PLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 5 ~~~~r-iv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
++..| .+.+|||.+.-.+...++... -+ |.++.. ++. .+.+.|+... ...+ ..+. .+++. .+
T Consensus 266 ~~~~~~ll~~SAT~~~r~~~~~l~~~~--l~-f~v~~~-~~~lr~i~~~yi~~~---~~~k-~~L~-----~ll~~--~g 330 (1638)
T PRK14701 266 GNKIGCLIVASATGKAKGDRVKLYREL--LG-FEVGSG-RSALRNIVDVYLNPE---KIIK-EHVR-----ELLKK--LG 330 (1638)
T ss_pred CCCccEEEEEecCCCchhHHHHHhhcC--eE-EEecCC-CCCCCCcEEEEEECC---HHHH-HHHH-----HHHHh--CC
Confidence 34455 577999998655666666422 11 222222 221 1323332221 1111 1111 11222 25
Q ss_pred CcEEEEEechHHH---HHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 82 HQAMVFVHSRKDT---VKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 82 ~~~lVF~~sr~~~---~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
.++||||+|++.+ +.+|+.|.+. +..++..||+ |.
T Consensus 331 ~~gIVF~~t~~~~e~ae~la~~L~~~-------------------------------------Gi~a~~~h~~-----R~ 368 (1638)
T PRK14701 331 KGGLIFVPIDEGAEKAEEIEKYLLED-------------------------------------GFKIELVSAK-----NK 368 (1638)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHC-------------------------------------CCeEEEecch-----HH
Confidence 6899999999875 6777777643 2237788886 89
Q ss_pred HHHHHHhCCCccEEEec----cccccccCCCc-EEEEEeccceecCCCCCcccC-------------chhhhhhccCCCC
Q 043190 159 LTERLFSEGLLKVLVCT----ATLAWGVNLPA-HTVVIKGTQLYDPKAGGWRDL-------------GMLDIFGRAGRPQ 220 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT----~tla~Gvnlp~-~~vVI~~~~~~~~~~~~~~~~-------------~~~~~~GRAGR~~ 220 (1492)
.+.+.|++|+++||||| ++++||||+|+ ++.||+ |+.+...++.. ..+++.|||||.|
T Consensus 369 ~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~----~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g 444 (1638)
T PRK14701 369 KGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVF----YGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEG 444 (1638)
T ss_pred HHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEE----eCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccC
Confidence 99999999999999999 48999999998 888886 55444222211 1234779999999
Q ss_pred CCccceEEEEeCCccHHHHHHHhcC
Q 043190 221 FDRSGEGIIITSHDKLAYYLRLLTS 245 (1492)
Q Consensus 221 ~d~~G~~i~~~~~~~~~~~~~~~~~ 245 (1492)
. .+.++......+.....+++..
T Consensus 445 ~--~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 445 I--PIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred C--cchhHHHhHHHHHHHHHHHhcc
Confidence 4 4555533333444444444443
No 262
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=98.97 E-value=6.1e-10 Score=101.72 Aligned_cols=72 Identities=35% Similarity=0.595 Sum_probs=61.5
Q ss_pred cccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCC
Q 043190 142 GLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQ 220 (1492)
Q Consensus 142 ~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~ 220 (1492)
..++..+||++++++|..+.+.|++|..+||++|++++.|+|+|..+.||. +++ +++...+.||+||+||.|
T Consensus 11 ~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~----~~~---~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 11 GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII----YDL---PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE----eCC---CCCHHHHHHhhcccccCC
Confidence 456899999999999999999999999999999999999999996665553 333 345667999999999975
No 263
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=98.95 E-value=1e-07 Score=113.83 Aligned_cols=114 Identities=18% Similarity=0.096 Sum_probs=83.9
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
..+.++|+|..++.....+-..|.. .-++...-+.|..+...|....
T Consensus 544 kqg~rvllFsqs~~mLdilE~fL~~---------------------------------~~~ysylRmDGtT~~~~R~~lV 590 (923)
T KOG0387|consen 544 KQGDRVLLFSQSRQMLDILESFLRR---------------------------------AKGYSYLRMDGTTPAALRQKLV 590 (923)
T ss_pred hCCCEEEEehhHHHHHHHHHHHHHh---------------------------------cCCceEEEecCCCccchhhHHH
Confidence 5667899998888765544333321 2256777889999999999999
Q ss_pred HHHhcCCc--eEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 995 ELFANNKI--QVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 995 ~~f~~g~~--~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+.|.+++. -.|++|.+.+-|+|+-..+-||. |||.- .++.=.|..-||-|.|..+.-.+|.|.+...
T Consensus 591 d~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII----fDPdW------NPStD~QAreRawRiGQkkdV~VYRL~t~gT 659 (923)
T KOG0387|consen 591 DRFNEDESIFVFLLTTRVGGLGLNLTGANRVII----FDPDW------NPSTDNQARERAWRIGQKKDVVVYRLMTAGT 659 (923)
T ss_pred HhhcCCCceEEEEEEecccccccccccCceEEE----ECCCC------CCccchHHHHHHHhhcCccceEEEEEecCCc
Confidence 99998764 36778999999999997766665 55432 2333468888999988777788888887664
No 264
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.95 E-value=1.7e-08 Score=126.15 Aligned_cols=127 Identities=13% Similarity=0.092 Sum_probs=84.9
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-||+.|... .++|.+..+.. ++ .-+..||+--..+--.+-.. ...+.. .+.+.+.+....|.|+|||
T Consensus 381 kLsGMTGTa~te~~Ef~~iY~l~----Vv-~IPtnkp~~R~d~~d~v~~t-~~~k~~----av~~~i~~~~~~g~PVLVg 450 (896)
T PRK13104 381 KLSGMTGTADTEAYEFQQIYNLE----VV-VIPTNRSMIRKDEADLVYLT-QADKFQ----AIIEDVRECGVRKQPVLVG 450 (896)
T ss_pred hhccCCCCChhHHHHHHHHhCCC----EE-ECCCCCCcceecCCCeEEcC-HHHHHH----HHHHHHHHHHhCCCCEEEE
Confidence 56788888754 44455555433 33 33456664332211001111 111111 1223344445789999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|...++.+++.|.+.. ....+.||.+...+|..|.++|+.|
T Consensus 451 t~Sie~sE~ls~~L~~~g-------------------------------------i~h~vLnak~~q~Ea~iia~Ag~~G 493 (896)
T PRK13104 451 TVSIEASEFLSQLLKKEN-------------------------------------IKHQVLNAKFHEKEAQIIAEAGRPG 493 (896)
T ss_pred eCcHHHHHHHHHHHHHcC-------------------------------------CCeEeecCCCChHHHHHHHhCCCCC
Confidence 999999999998887542 1267789999999999999999999
Q ss_pred CccEEEeccccccccCC
Q 043190 168 LLKVLVCTATLAWGVNL 184 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnl 184 (1492)
. |+|||+.++||+|+
T Consensus 494 ~--VtIATNmAGRGtDI 508 (896)
T PRK13104 494 A--VTIATNMAGRGTDI 508 (896)
T ss_pred c--EEEeccCccCCcce
Confidence 4 99999999999997
No 265
>PRK13766 Hef nuclease; Provisional
Probab=98.92 E-value=4.4e-09 Score=138.97 Aligned_cols=119 Identities=23% Similarity=0.333 Sum_probs=90.5
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
.++.++||||++++.|+.+++.|...... ...+. +.+-..-|+||++.+|.
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~~~---~~~~~--------------------------g~~~~~~~~~~~~~~r~ 413 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEGIK---AVRFV--------------------------GQASKDGDKGMSQKEQI 413 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCCCc---eEEEE--------------------------ccccccccCCCCHHHHH
Confidence 45789999999999999998888432110 00000 00000014679999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
.+.+.|++|..+|||||+.+++|+|+|..++||. ||+. ++...++||+||+||.| .|.+++++..+..
T Consensus 414 ~~~~~F~~g~~~vLvaT~~~~eGldi~~~~~VI~----yd~~---~s~~r~iQR~GR~gR~~---~~~v~~l~~~~t~ 481 (773)
T PRK13766 414 EILDKFRAGEFNVLVSTSVAEEGLDIPSVDLVIF----YEPV---PSEIRSIQRKGRTGRQE---EGRVVVLIAKGTR 481 (773)
T ss_pred HHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE----eCCC---CCHHHHHHHhcccCcCC---CCEEEEEEeCCCh
Confidence 9999999999999999999999999999999996 7763 46677999999999986 4888888766543
No 266
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.88 E-value=1.7e-07 Score=115.00 Aligned_cols=305 Identities=13% Similarity=0.139 Sum_probs=163.0
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCC
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~ 782 (1492)
.....+|-||.|||||.+..-++-..+. .++.++++++-+++|+.+.+.+++... ..|... . .+.....-....
T Consensus 48 ~~~V~vVRSpMGTGKTtaLi~wLk~~l~-~~~~~VLvVShRrSL~~sL~~rf~~~~--l~gFv~-Y--~d~~~~~i~~~~ 121 (824)
T PF02399_consen 48 KRGVLVVRSPMGTGKTTALIRWLKDALK-NPDKSVLVVSHRRSLTKSLAERFKKAG--LSGFVN-Y--LDSDDYIIDGRP 121 (824)
T ss_pred CCCeEEEECCCCCCcHHHHHHHHHHhcc-CCCCeEEEEEhHHHHHHHHHHHHhhcC--CCccee-e--eccccccccccc
Confidence 4457789999999999987665555443 358999999999999999888876521 002111 1 111111011113
Q ss_pred CcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC-Ccc---HHHHHHHHHHHhhhccCCceEEEEEcCCCCC-
Q 043190 783 ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-RGP---ILEVIVSRMRYISSQTERAVRFIGLSTALAN- 857 (1492)
Q Consensus 783 ~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~-~g~---~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~- 857 (1492)
.+-+++..+++..+. ...+.++++|||||+-..... +.+ ..+.+...+..+. ....++|+|-|++.+
T Consensus 122 ~~rLivqIdSL~R~~-----~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI---~~ak~VI~~DA~ln~~ 193 (824)
T PF02399_consen 122 YDRLIVQIDSLHRLD-----GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELI---RNAKTVIVMDADLNDQ 193 (824)
T ss_pred cCeEEEEehhhhhcc-----cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHH---HhCCeEEEecCCCCHH
Confidence 456666666553322 234778999999999733111 111 2233344444333 346789999999976
Q ss_pred -hHHHHHHhcCCcceeEecC-----CCccccCcEEEE--------eccCCccccc-------------cccccChhH-HH
Q 043190 858 -AGDLADWLGVGEIGLFNFK-----PSVRPVPLEVHI--------QGYPGKFYCP-------------RMNSMNKPA-YA 909 (1492)
Q Consensus 858 -~~~~~~~l~~~~~~~~~~~-----~~~r~~~l~~~~--------~~~~~~~~~~-------------~~~~~~~~~-~~ 909 (1492)
.+.++..-+.....++.-. ...|...+-..+ ...++..... ......... +.
T Consensus 194 tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 194 TVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH
Confidence 3444443333332222110 011111000000 0000000000 000000111 12
Q ss_pred HH-hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHH
Q 043190 910 AI-CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDK 988 (1492)
Q Consensus 910 ~l-~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 988 (1492)
.+ .....++++-||++|...++.+++.... ....|..++|.-+..
T Consensus 274 ~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~----------------------------------~~~~Vl~l~s~~~~~ 319 (824)
T PF02399_consen 274 ELLARLNAGKNICVFSSTVSFAEIVARFCAR----------------------------------FTKKVLVLNSTDKLE 319 (824)
T ss_pred HHHHHHhCCCcEEEEeChHHHHHHHHHHHHh----------------------------------cCCeEEEEcCCCCcc
Confidence 22 2235677888999888877766643321 245677777765555
Q ss_pred HHHHHHHHHhcCCceEEEeccccccccCCCCcEE--EEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 989 DRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLV--IIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 989 ~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~--VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
.++. =++.+|++=|+++..|+++....+ +.. +..+.. ..-+..+..||+||+.... ..+.++.
T Consensus 320 ---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~~f~---yvk~~~---~gpd~~s~~Q~lgRvR~l~---~~ei~v~ 384 (824)
T PF02399_consen 320 ---DVES---WKKYDVVIYTPVITVGLSFEEKHFDSMFA---YVKPMS---YGPDMVSVYQMLGRVRSLL---DNEIYVY 384 (824)
T ss_pred ---cccc---ccceeEEEEeceEEEEeccchhhceEEEE---EecCCC---CCCcHHHHHHHHHHHHhhc---cCeEEEE
Confidence 3322 356899999999999999975321 221 111111 1123668999999998874 5566666
Q ss_pred ecCC
Q 043190 1067 VHEP 1070 (1492)
Q Consensus 1067 ~~~~ 1070 (1492)
++..
T Consensus 385 ~d~~ 388 (824)
T PF02399_consen 385 IDAS 388 (824)
T ss_pred Eecc
Confidence 6543
No 267
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.87 E-value=4e-08 Score=122.50 Aligned_cols=193 Identities=17% Similarity=0.201 Sum_probs=118.5
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-||+.|... ..+|.+..+.. ++ .-+..||+--..+--.+-.. ...+. + .+.+.+.+....|.|+|||
T Consensus 386 kL~GMTGTa~te~~Ef~~iY~l~----Vv-~IPTnkp~~R~d~~d~iy~t-~~~K~---~-Aii~ei~~~~~~GrpVLV~ 455 (908)
T PRK13107 386 KLAGMTGTADTEAFEFQHIYGLD----TV-VVPTNRPMVRKDMADLVYLT-ADEKY---Q-AIIKDIKDCRERGQPVLVG 455 (908)
T ss_pred HhhcccCCChHHHHHHHHHhCCC----EE-ECCCCCCccceeCCCcEEeC-HHHHH---H-HHHHHHHHHHHcCCCEEEE
Confidence 56789999865 33444444433 33 33456664332211000011 11111 1 1223444455789999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|...++.+++.|.+.. ....++||.++..+|..|.++|+.|
T Consensus 456 t~sv~~se~ls~~L~~~g-------------------------------------i~~~vLnak~~~~Ea~ii~~Ag~~G 498 (908)
T PRK13107 456 TVSIEQSELLARLMVKEK-------------------------------------IPHEVLNAKFHEREAEIVAQAGRTG 498 (908)
T ss_pred eCcHHHHHHHHHHHHHCC-------------------------------------CCeEeccCcccHHHHHHHHhCCCCC
Confidence 999999999998876531 1256789999999999999999999
Q ss_pred CccEEEeccccccccCCCc-------------------------------------EEEEEeccceecCCCCCcccCchh
Q 043190 168 LLKVLVCTATLAWGVNLPA-------------------------------------HTVVIKGTQLYDPKAGGWRDLGML 210 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnlp~-------------------------------------~~vVI~~~~~~~~~~~~~~~~~~~ 210 (1492)
. |+|||+.++||.|+-- =..|| ||.+.+... ==.
T Consensus 499 ~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VI-gTerheSrR------ID~ 569 (908)
T PRK13107 499 A--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHIL-GTERHESRR------IDN 569 (908)
T ss_pred c--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEE-ecccCchHH------HHh
Confidence 9 9999999999999831 12333 333322111 024
Q ss_pred hhhhccCCCCCCccceEEEEeCCcc-H---------HHHHHHh--cCCCccccchhHhHHH
Q 043190 211 DIFGRAGRPQFDRSGEGIIITSHDK-L---------AYYLRLL--TSQLPIESQFISSLKD 259 (1492)
Q Consensus 211 ~~~GRAGR~~~d~~G~~i~~~~~~~-~---------~~~~~~~--~~~~~ies~l~~~l~~ 259 (1492)
|..|||||-| ..|.+..+.+-+| + ..+.+.+ .+..+|++.+.....+
T Consensus 570 QLrGRaGRQG--DPGss~f~lSlED~L~r~f~~~~~~~~~~~~~~~e~~~i~~~~~~~~i~ 628 (908)
T PRK13107 570 QLRGRAGRQG--DAGSSRFYLSMEDSLMRIFASDRVSGMMKKLGMEEGEAIEHPWVSRAIE 628 (908)
T ss_pred hhhcccccCC--CCCceeEEEEeCcHHHHHhChHHHHHHHHHcCCCCCCccccHHHHHHHH
Confidence 5789999988 6788887776544 1 2222222 2345777776654333
No 268
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=98.86 E-value=9.4e-08 Score=113.92 Aligned_cols=109 Identities=20% Similarity=0.180 Sum_probs=78.8
Q ss_pred HHhccceEeecCCCCHHHHHHHHHHHhcCC--ceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhh
Q 043190 972 QTLQFGIGLHHAGLNDKDRSLVEELFANNK--IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMM 1049 (1492)
Q Consensus 972 ~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~--~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~ 1049 (1492)
..++++..-+-|...-.+|+.+++.|...+ .-.|.+|-+.+.|||+-..++||. ||- ++.+-+=.|.-
T Consensus 798 ~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi----hD~------dFNP~dD~QAE 867 (941)
T KOG0389|consen 798 DTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII----HDI------DFNPYDDKQAE 867 (941)
T ss_pred HhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE----eec------CCCCcccchhH
Confidence 445556666788999999999999997654 346789999999999999988886 332 22223336778
Q ss_pred cccCCCCCCCceEEEEEecCCcHH-HHHHhhcCCCceeeccc
Q 043190 1050 GRAGRPQYDQHGKAVILVHEPKKS-FYKKFLYEPFPVESSLR 1090 (1492)
Q Consensus 1050 GRagR~g~~~~G~~i~l~~~~~~~-~~~~~l~~~~pies~l~ 1090 (1492)
-||.|.|..++-.++.|++.+..+ .+.++-+..+.+|+.+.
T Consensus 868 DRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt 909 (941)
T KOG0389|consen 868 DRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLT 909 (941)
T ss_pred HHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhc
Confidence 888888888899999999877643 34444455555555544
No 269
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.86 E-value=6e-08 Score=121.45 Aligned_cols=169 Identities=15% Similarity=0.159 Sum_probs=106.7
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++.|||.|... .++|.+..+.. +.. -+..+|+-....--.+.. ....+... +...+.+....+.|+|||
T Consensus 367 kl~GmTGTa~te~~E~~~iY~l~----vv~-IPtnkp~~r~d~~d~i~~-t~~~K~~a----I~~~I~~~~~~grpVLIf 436 (830)
T PRK12904 367 KLAGMTGTADTEAEEFREIYNLD----VVV-IPTNRPMIRIDHPDLIYK-TEKEKFDA----VVEDIKERHKKGQPVLVG 436 (830)
T ss_pred hhcccCCCcHHHHHHHHHHhCCC----EEE-cCCCCCeeeeeCCCeEEE-CHHHHHHH----HHHHHHHHHhcCCCEEEE
Confidence 57799999865 44455555443 333 344555433221000111 11112221 122333333678899999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|+..++.+++.|.+.. ......||. +.+|+....+|+.|
T Consensus 437 t~Si~~se~Ls~~L~~~g-------------------------------------i~~~vLnak--q~eREa~Iia~Ag~ 477 (830)
T PRK12904 437 TVSIEKSELLSKLLKKAG-------------------------------------IPHNVLNAK--NHEREAEIIAQAGR 477 (830)
T ss_pred eCcHHHHHHHHHHHHHCC-------------------------------------CceEeccCc--hHHHHHHHHHhcCC
Confidence 999999999999887531 125667885 88999999999999
Q ss_pred CccEEEeccccccccCCCcE--------------------------------------EEEEeccceecCCCCCcccCch
Q 043190 168 LLKVLVCTATLAWGVNLPAH--------------------------------------TVVIKGTQLYDPKAGGWRDLGM 209 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnlp~~--------------------------------------~vVI~~~~~~~~~~~~~~~~~~ 209 (1492)
...|+|||+.++||+|++-- ..|| ||.+.+... =-
T Consensus 478 ~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVi-gTerhesrR------id 550 (830)
T PRK12904 478 PGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVI-GTERHESRR------ID 550 (830)
T ss_pred CceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEE-ecccCchHH------HH
Confidence 99999999999999998542 1222 232222111 02
Q ss_pred hhhhhccCCCCCCccceEEEEeCCcc
Q 043190 210 LDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 210 ~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.|..|||||-| ..|.+-.+.+-+|
T Consensus 551 ~QlrGRagRQG--dpGss~f~lSleD 574 (830)
T PRK12904 551 NQLRGRSGRQG--DPGSSRFYLSLED 574 (830)
T ss_pred HHhhcccccCC--CCCceeEEEEcCc
Confidence 45789999988 6788887776544
No 270
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.84 E-value=2.6e-08 Score=113.76 Aligned_cols=170 Identities=20% Similarity=0.289 Sum_probs=123.0
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
...|+|++|||-++++ +..-=+ . ++..--||.-|-.-.+.+.+.. ..+.++ +..+.+.+..+..+|
T Consensus 385 ~~~q~i~VSATPg~~E-~e~s~~-----~--vveQiIRPTGLlDP~ievRp~~-----~QvdDL-~~EI~~r~~~~eRvL 450 (663)
T COG0556 385 KIPQTIYVSATPGDYE-LEQSGG-----N--VVEQIIRPTGLLDPEIEVRPTK-----GQVDDL-LSEIRKRVAKNERVL 450 (663)
T ss_pred hcCCEEEEECCCChHH-HHhccC-----c--eeEEeecCCCCCCCceeeecCC-----CcHHHH-HHHHHHHHhcCCeEE
Confidence 3569999999965533 222111 1 1233345554432222222211 122332 345556667889999
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|-+-|++.+|.++.+|.+.. -.+.|.|+++..-+|..+.+..|
T Consensus 451 VTtLTKkmAEdLT~Yl~e~g-------------------------------------ikv~YlHSdidTlER~eIirdLR 493 (663)
T COG0556 451 VTTLTKKMAEDLTEYLKELG-------------------------------------IKVRYLHSDIDTLERVEIIRDLR 493 (663)
T ss_pred EEeehHHHHHHHHHHHHhcC-------------------------------------ceEEeeeccchHHHHHHHHHHHh
Confidence 99999999999999987653 23899999999999999999999
Q ss_pred CCCccEEEeccccccccCCCcEEEEEeccceecCCCCC--cccCchhhhhhccCCCCCCccceEEEEeCC
Q 043190 166 EGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGG--WRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~--~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~ 233 (1492)
.|...|||--+.|-.|+|+|-+..|- ..|+++.+ -+..|.+|-+|||.|. ..|.+|+..+.
T Consensus 494 ~G~~DvLVGINLLREGLDiPEVsLVA----IlDADKeGFLRse~SLIQtIGRAARN---~~GkvIlYAD~ 556 (663)
T COG0556 494 LGEFDVLVGINLLREGLDLPEVSLVA----ILDADKEGFLRSERSLIQTIGRAARN---VNGKVILYADK 556 (663)
T ss_pred cCCccEEEeehhhhccCCCcceeEEE----EeecCccccccccchHHHHHHHHhhc---cCCeEEEEchh
Confidence 99999999999999999999998775 36665544 3677899999999996 47999988764
No 271
>PRK09401 reverse gyrase; Reviewed
Probab=98.83 E-value=1.4e-08 Score=134.84 Aligned_cols=91 Identities=29% Similarity=0.376 Sum_probs=70.7
Q ss_pred CCcEEEEEechHH---HHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 81 GHQAMVFVHSRKD---TVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 81 ~~~~lVF~~sr~~---~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
+.++||||+|++. ++.+++.|.+. +..++..||+| .|
T Consensus 328 ~~~~LIFv~t~~~~~~ae~l~~~L~~~-------------------------------------gi~v~~~hg~l---~~ 367 (1176)
T PRK09401 328 GDGGLIFVPSDKGKEYAEELAEYLEDL-------------------------------------GINAELAISGF---ER 367 (1176)
T ss_pred CCCEEEEEecccChHHHHHHHHHHHHC-------------------------------------CCcEEEEeCcH---HH
Confidence 4689999999888 88888877653 22378899999 23
Q ss_pred HHHHHHHhCCCccEEEe----ccccccccCCCc-EEEEEeccceecCCCCCc---ccCchhhhhhccC
Q 043190 158 GLTERLFSEGLLKVLVC----TATLAWGVNLPA-HTVVIKGTQLYDPKAGGW---RDLGMLDIFGRAG 217 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlva----T~tla~Gvnlp~-~~vVI~~~~~~~~~~~~~---~~~~~~~~~GRAG 217 (1492)
. .+.|++|+++|||| |++++||+|+|. ++.||+ |+.+...+ ....+.|++||+-
T Consensus 368 -~-l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~----y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 368 -K-FEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIF----YGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred -H-HHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEE----eCCCCEEEeccccccCHHHHHHHH
Confidence 3 39999999999999 689999999999 788886 66444222 2345888999985
No 272
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.75 E-value=2.9e-08 Score=113.63 Aligned_cols=101 Identities=22% Similarity=0.281 Sum_probs=81.2
Q ss_pred cEEEEcCCCChhhHHHHHHHHhC--CCccEEEeccccccccCCCcEEEEEeccceecCCCC-CcccCchhhhhhccCCCC
Q 043190 144 AVGVHHAGMLRSDRGLTERLFSE--GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG-GWRDLGMLDIFGRAGRPQ 220 (1492)
Q Consensus 144 gv~~hhagl~~~~R~~ve~~f~~--g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~-~~~~~~~~~~~GRAGR~~ 220 (1492)
.+++.+|+|||+.|..--.+|-+ +..+|||||+..+||+||..++||+.+.+.|++.+- .++.....|.+|||||.|
T Consensus 383 k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~ 462 (700)
T KOG0953|consen 383 KCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFG 462 (700)
T ss_pred ceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccc
Confidence 48999999999999999999998 899999999999999999999999999999986542 344456788999999986
Q ss_pred CC-ccceEEEEeCCccHHHHHHHhcC
Q 043190 221 FD-RSGEGIIITSHDKLAYYLRLLTS 245 (1492)
Q Consensus 221 ~d-~~G~~i~~~~~~~~~~~~~~~~~ 245 (1492)
-- ..|.+-.+. .+++..+.+.++.
T Consensus 463 s~~~~G~vTtl~-~eDL~~L~~~l~~ 487 (700)
T KOG0953|consen 463 SKYPQGEVTTLH-SEDLKLLKRILKR 487 (700)
T ss_pred cCCcCceEEEee-HhhHHHHHHHHhC
Confidence 31 236655554 4456666665554
No 273
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.66 E-value=1.3e-08 Score=104.83 Aligned_cols=147 Identities=26% Similarity=0.322 Sum_probs=95.6
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCc-ccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhc
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSY-RPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~-rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1492)
.+|..-|++.+|||+++ ...+.+.+..+ |-++|+-+... .-.-|.++|+...+.....+. .+ +++.+ +
T Consensus 213 ~tp~~KQvmmfsatlskeiRpvC~kFmQd-PmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl---~d-----LLd~L-e 282 (387)
T KOG0329|consen 213 MTPHEKQVMMFSATLSKEIRPVCHKFMQD-PMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKL---ND-----LLDVL-E 282 (387)
T ss_pred cCcccceeeeeeeecchhhHHHHHhhhcC-chhhhccchhhhhhhhHHHHHHhhhhhhhhhhh---hh-----hhhhh-h
Confidence 46788899999999997 66666666555 45555432222 122355555544433222211 11 11111 2
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
=.|++||+.|-.. |.
T Consensus 283 FNQVvIFvKsv~R-------l~---------------------------------------------------------- 297 (387)
T KOG0329|consen 283 FNQVVIFVKSVQR-------LS---------------------------------------------------------- 297 (387)
T ss_pred hcceeEeeehhhh-------hh----------------------------------------------------------
Confidence 3689999987553 10
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
| .-+ +|||+.+.||+|+..++++|+ ||-+. +..+|+||+|||||.| +.|.+|.+++.++-....
T Consensus 298 ---f---~kr-~vat~lfgrgmdiervNi~~N----Ydmp~---~~DtYlHrv~rAgrfG--tkglaitfvs~e~da~iL 361 (387)
T KOG0329|consen 298 ---F---QKR-LVATDLFGRGMDIERVNIVFN----YDMPE---DSDTYLHRVARAGRFG--TKGLAITFVSDENDAKIL 361 (387)
T ss_pred ---h---hhh-hHHhhhhccccCcccceeeec----cCCCC---CchHHHHHhhhhhccc--cccceeehhcchhhHHHh
Confidence 1 112 899999999999999999998 55332 3456999999999999 899999999876654443
No 274
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=98.64 E-value=4e-07 Score=113.16 Aligned_cols=93 Identities=22% Similarity=0.200 Sum_probs=69.9
Q ss_pred HHHHhccceE--eecCCCCHHHHHHHHHHHhcC-CceEEE-eccccccccCCCCcEEEEecceeeeCccCccccCCHHHH
Q 043190 970 LRQTLQFGIG--LHHAGLNDKDRSLVEELFANN-KIQVLV-CTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDI 1045 (1492)
Q Consensus 970 l~~~~~~~v~--~~h~~l~~~~R~~v~~~f~~g-~~~vLv-aT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~ 1045 (1492)
|.+..-..|. .+-|+.++.+|.++.++|.++ .++||+ +|-+.+-|+|+-+.+.||. ++ -|+.+..=
T Consensus 1360 L~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF----vE------HDWNPMrD 1429 (1549)
T KOG0392|consen 1360 LFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF----VE------HDWNPMRD 1429 (1549)
T ss_pred HhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEE----Ee------cCCCchhh
Confidence 3333334444 678999999999999999998 788876 6668899999998877774 33 22333333
Q ss_pred HHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 1046 LQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1046 ~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
+|.+-||.|-|..+.-.+|.+.+....
T Consensus 1430 LQAMDRAHRIGQKrvVNVyRlItrGTL 1456 (1549)
T KOG0392|consen 1430 LQAMDRAHRIGQKRVVNVYRLITRGTL 1456 (1549)
T ss_pred HHHHHHHHhhcCceeeeeeeehhcccH
Confidence 899999999997777888888877653
No 275
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.64 E-value=1e-07 Score=111.55 Aligned_cols=150 Identities=20% Similarity=0.168 Sum_probs=84.8
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCC---ceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCC---cc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSD---MKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYT---PD 776 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~---~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~---~~ 776 (1492)
..+.++++.++|+|||..++..+.......+. ..+||++|. ++..+-..++.+.+... ..++..+.|... ..
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHTT
T ss_pred CCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhccccccc-ccccccccccccccccc
Confidence 45689999999999999887666543332222 259999999 77777677766654332 457888877651 11
Q ss_pred hhccCCCcEEEECchhhhHhhhcccC-ccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 777 LMALLSADIIISTPEKWDGISRNWHS-RNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 777 ~~~~~~~~Iiv~Tpe~l~~l~~~~~~-~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
.......+++++|++.+...-..... ...--+.++||+||+|.+.+........+.. + . ....+++|||+
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~-l-------~-~~~~~lLSgTP 172 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRK-L-------R-ARYRWLLSGTP 172 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHC-C-------C-ECEEEEE-SS-
T ss_pred ccccccceeeeccccccccccccccccccccccceeEEEecccccccccccccccccc-c-------c-cceEEeecccc
Confidence 22345789999999987611111101 1111358899999999985433333332221 2 2 56678899996
Q ss_pred CC--hHHHHH
Q 043190 856 AN--AGDLAD 863 (1492)
Q Consensus 856 ~~--~~~~~~ 863 (1492)
-. ..++..
T Consensus 173 ~~n~~~dl~~ 182 (299)
T PF00176_consen 173 IQNSLEDLYS 182 (299)
T ss_dssp SSSGSHHHHH
T ss_pred cccccccccc
Confidence 44 344443
No 276
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.62 E-value=1.6e-07 Score=107.10 Aligned_cols=72 Identities=22% Similarity=0.443 Sum_probs=57.6
Q ss_pred cCCCCCCHHHHHHHHhh---hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCC----ceEEEEcccHHHHHHHHHHHHH
Q 043190 684 YNFSHFNPIQTQIFHIL---YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSD----MKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~---~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~----~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
|+|. ++|.|.+.+..+ +..++++++.||||+|||++++.|++..+...+. .+++|.++|.++..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 5676 599999955543 3478899999999999999999999876554333 3899999999998888776654
No 277
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.62 E-value=1.6e-07 Score=107.10 Aligned_cols=72 Identities=22% Similarity=0.443 Sum_probs=57.6
Q ss_pred cCCCCCCHHHHHHHHhh---hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCC----ceEEEEcccHHHHHHHHHHHHH
Q 043190 684 YNFSHFNPIQTQIFHIL---YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSD----MKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~---~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~----~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
|+|. ++|.|.+.+..+ +..++++++.||||+|||++++.|++..+...+. .+++|.++|.++..|....+++
T Consensus 5 FPy~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 5676 599999955543 3478899999999999999999999876554333 3899999999998888776654
No 278
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.56 E-value=3.7e-07 Score=121.91 Aligned_cols=76 Identities=24% Similarity=0.321 Sum_probs=63.3
Q ss_pred CCcEEEEEech---HHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 81 GHQAMVFVHSR---KDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 81 ~~~~lVF~~sr---~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
+.++||||+|+ +.|+.+++.|.+. +..++..||+|+.
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~~-------------------------------------g~~a~~lhg~~~~--- 365 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLENH-------------------------------------GVKAVAYHATKPK--- 365 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHhC-------------------------------------CceEEEEeCCCCH---
Confidence 56899999999 8898888887643 2247889999973
Q ss_pred HHHHHHHhCCCccEEEec----cccccccCCCc-EEEEEeccceecCCC
Q 043190 158 GLTERLFSEGLLKVLVCT----ATLAWGVNLPA-HTVVIKGTQLYDPKA 201 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT----~tla~Gvnlp~-~~vVI~~~~~~~~~~ 201 (1492)
.+.+.|++|+++||||| ++++||+|+|+ +++||+ |+.+.
T Consensus 366 -~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~----~~~P~ 409 (1171)
T TIGR01054 366 -EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVF----LGVPK 409 (1171)
T ss_pred -HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEE----ECCCC
Confidence 68899999999999994 89999999999 799996 66543
No 279
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.53 E-value=3.2e-07 Score=118.42 Aligned_cols=116 Identities=18% Similarity=0.277 Sum_probs=92.1
Q ss_pred HHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 72 KKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 72 ~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
..+...++++++++|=|||.+.|.++.+.++.... .+...|+-
T Consensus 431 ~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-------------------------------------~v~LlHSR 473 (733)
T COG1203 431 ELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP-------------------------------------KVLLLHSR 473 (733)
T ss_pred hcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC-------------------------------------CEEEEecc
Confidence 34445568899999999999999888888765421 27889999
Q ss_pred CChhhHHHHHHHHh----CCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceE
Q 043190 152 MLRSDRGLTERLFS----EGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEG 227 (1492)
Q Consensus 152 l~~~~R~~ve~~f~----~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~ 227 (1492)
+...+|...|+.++ .+...|+|||.+.+.|||+. .+++|....+- .+.+||+||.+|.|.+..|.+
T Consensus 474 f~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe~aPi---------dSLIQR~GRv~R~g~~~~~~~ 543 (733)
T COG1203 474 FTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITELAPI---------DSLIQRAGRVNRHGKKENGKI 543 (733)
T ss_pred cchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeecCCCH---------HHHHHHHHHHhhcccccCCce
Confidence 99999999988554 57889999999999999997 56666433222 248999999999997777888
Q ss_pred EEEeCCc
Q 043190 228 IIITSHD 234 (1492)
Q Consensus 228 i~~~~~~ 234 (1492)
++....+
T Consensus 544 ~v~~~~~ 550 (733)
T COG1203 544 YVYNDEE 550 (733)
T ss_pred eEeeccc
Confidence 8887644
No 280
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.41 E-value=2.4e-06 Score=105.91 Aligned_cols=129 Identities=18% Similarity=0.175 Sum_probs=85.4
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. +..+| .+-.+. -+..-+.-+-||-|||+++.+|+.-.... +..+.+++..--||.--+..... +-.++|.
T Consensus 78 g~~-~~dVQ--liG~i~-lh~g~iaEM~TGEGKTL~atlp~ylnaL~--gkgVhvVTvNdYLA~RDae~m~~-l~~~LGl 150 (822)
T COG0653 78 GMR-HFDVQ--LLGGIV-LHLGDIAEMRTGEGKTLVATLPAYLNALA--GKGVHVVTVNDYLARRDAEWMGP-LYEFLGL 150 (822)
T ss_pred CCC-hhhHH--Hhhhhh-hcCCceeeeecCCchHHHHHHHHHHHhcC--CCCcEEeeehHHhhhhCHHHHHH-HHHHcCC
Confidence 544 33355 444432 34456889999999999999988754443 66777777777777665555544 4455699
Q ss_pred EEEEEcCCCCcchh-ccCCCcEEEECchhh--hHhhhc---ccCccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDLM-ALLSADIIISTPEKW--DGISRN---WHSRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~-~~~~~~Iiv~Tpe~l--~~l~~~---~~~~~~l~~i~liViDEaH~l 820 (1492)
+|+....+.....+ ..-.+||..+|-..+ +.+-.+ ...........+.|+||++.+
T Consensus 151 svG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSI 212 (822)
T COG0653 151 SVGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSI 212 (822)
T ss_pred ceeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhe
Confidence 99998887765533 334789999998775 322222 112344557889999999843
No 281
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.38 E-value=1.5e-05 Score=105.07 Aligned_cols=141 Identities=16% Similarity=0.168 Sum_probs=87.9
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhcc--C
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL--L 781 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~--~ 781 (1492)
++..+|.=-||||||+......-........+++++|+-++.|-.|..+.+.. ++..... .. -..+...-.+.+ .
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~-~~~~~~~-~~-~~~s~~~Lk~~l~~~ 349 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQS-FGKVAFN-DP-KAESTSELKELLEDG 349 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHH-HHHhhhh-cc-cccCHHHHHHHHhcC
Confidence 35689999999999997766555444444578999999999999999999887 4333111 11 111111111111 2
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
...|+|||-++|............-++=-+||+||||+- ..| ....+++... ++...+|+|+|+--
T Consensus 350 ~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS--Q~G----~~~~~~~~~~----~~a~~~gFTGTPi~ 415 (962)
T COG0610 350 KGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS--QYG----ELAKLLKKAL----KKAIFIGFTGTPIF 415 (962)
T ss_pred CCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc--ccc----HHHHHHHHHh----ccceEEEeeCCccc
Confidence 458999999999777655311111223347899999954 222 2233333322 24788999999744
No 282
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.37 E-value=1.6e-05 Score=89.88 Aligned_cols=154 Identities=18% Similarity=0.207 Sum_probs=101.1
Q ss_pred CCCHHHHHHHHhhhcCC----CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 688 HFNPIQTQIFHILYHTD----NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~----~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
.+-|+|.+.+.-+.... .-.|+....|.|||..++..++.... +...++++|+.+|.+ ..+++.+.-. ..
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~---ra~tLVvaP~VAlmQ-W~nEI~~~T~--gs 257 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVD---RAPTLVVAPTVALMQ-WKNEIERHTS--GS 257 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccc---cCCeeEEccHHHHHH-HHHHHHHhcc--Cc
Confidence 36788988665432111 23478889999999998777766443 567999999999763 3444443222 24
Q ss_pred CEEEEEcCCCC-cchhccCCCcEEEECchhhhHhhhcccC-----------ccccCcc--cEEEEecccccCCCCccHHH
Q 043190 764 KEMVEMTGDYT-PDLMALLSADIIISTPEKWDGISRNWHS-----------RNYVKKV--GLMILDEIHLLGAERGPILE 829 (1492)
Q Consensus 764 ~~v~~~~g~~~-~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~-----------~~~l~~i--~liViDEaH~l~~~~g~~~~ 829 (1492)
.++..++|... .+.+.+.+.|++.+|+..+.+..|+... ...+.++ .-||+||||.+.+ |.....
T Consensus 258 lkv~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~-R~snTA 336 (791)
T KOG1002|consen 258 LKVYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKD-RQSNTA 336 (791)
T ss_pred eEEEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccc-ccccHH
Confidence 68888898643 4566778999999999988777766211 1234444 4699999998854 333444
Q ss_pred HHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 830 VIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 830 ~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
..+-.++ ..+-+++|+|+-
T Consensus 337 rAV~~L~--------tt~rw~LSGTPL 355 (791)
T KOG1002|consen 337 RAVFALE--------TTYRWCLSGTPL 355 (791)
T ss_pred HHHHhhH--------hhhhhhccCCcc
Confidence 3443343 234478999863
No 283
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.33 E-value=2.1e-05 Score=93.20 Aligned_cols=171 Identities=18% Similarity=0.169 Sum_probs=110.5
Q ss_pred CCCHHHHHHHHhhhc----CCCcEEEecCCCCCchHHHHHHHHHH-----hccC---CCceEEEEcccHHHHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYH----TDNNVLLGAPTGSGKTISAELAMLHL-----FNTQ---SDMKVVYIAPLKAIVRERMNDWK 755 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~----~~~~vli~apTGsGKT~~~~l~il~~-----l~~~---~~~~~l~i~P~r~La~q~~~~~~ 755 (1492)
.+-|+|..++.-+.. .+.-.|+...-|-|||+..+-.|+.. .... ...+.|||||- +|..|...++.
T Consensus 325 ~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~ 403 (901)
T KOG4439|consen 325 ELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVA 403 (901)
T ss_pred ecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHH
Confidence 477899998876652 23457889999999999766555542 1111 12259999997 67788888888
Q ss_pred HHhhhccCCEEEEEcCCCC--cchhccCCCcEEEECchhhhH----hhhcccCccccCc--ccEEEEecccccCCCCccH
Q 043190 756 DRLVSQLGKEMVEMTGDYT--PDLMALLSADIIISTPEKWDG----ISRNWHSRNYVKK--VGLMILDEIHLLGAERGPI 827 (1492)
Q Consensus 756 ~~~~~~~g~~v~~~~g~~~--~~~~~~~~~~Iiv~Tpe~l~~----l~~~~~~~~~l~~--i~liViDEaH~l~~~~g~~ 827 (1492)
+++... -++|..++|.-. ...+.+..+||+|+|+.-... -+........+-+ .+.||+||||.+-+ +...
T Consensus 404 ~rl~~n-~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN-~~tq 481 (901)
T KOG4439|consen 404 RRLEQN-ALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRN-SNTQ 481 (901)
T ss_pred HHHhhc-ceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcc-cchh
Confidence 888776 789999999752 345567789999999864322 1111122222333 35799999998843 2334
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCC-----hHHHHHHhcCCc
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALAN-----AGDLADWLGVGE 869 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-----~~~~~~~l~~~~ 869 (1492)
-...+.+++.. . -.++|+|+-. .-.+..|+++++
T Consensus 482 ~S~AVC~L~a~-------~-RWclTGTPiqNn~~DvysLlrFLr~~p 520 (901)
T KOG4439|consen 482 CSKAVCKLSAK-------S-RWCLTGTPIQNNLWDVYSLLRFLRCPP 520 (901)
T ss_pred HHHHHHHHhhc-------c-eeecccCccccchhHHHHHHHHhcCCC
Confidence 44455555432 2 3678888632 233556666654
No 284
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.23 E-value=2.1e-06 Score=105.33 Aligned_cols=346 Identities=18% Similarity=0.237 Sum_probs=179.7
Q ss_pred CCCHHHHHHHH---hhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcccHHHHHHHHHHHHHHhhhcc-
Q 043190 688 HFNPIQTQIFH---ILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAPLKAIVRERMNDWKDRLVSQL- 762 (1492)
Q Consensus 688 ~l~~~Q~~~i~---~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~- 762 (1492)
.+.++|...+. .+++++=|-|+.-.+|-|||.+-+-.|...+.. .-.+.-++|||+-.|.+ |...|..+.
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~N-----W~~Ef~kWaP 468 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVN-----WSSEFPKWAP 468 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCC-----chhhcccccc
Confidence 57788888765 467777799999999999998765444332221 12467799999988775 666676652
Q ss_pred CCEEEEEcCCCCcc-----hhccCCCcEEEECchhhhHhhhcccCccccCc--ccEEEEecccccCCCCccHHHHHHHHH
Q 043190 763 GKEMVEMTGDYTPD-----LMALLSADIIISTPEKWDGISRNWHSRNYVKK--VGLMILDEIHLLGAERGPILEVIVSRM 835 (1492)
Q Consensus 763 g~~v~~~~g~~~~~-----~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~--i~liViDEaH~l~~~~g~~~~~i~~~l 835 (1492)
.+..+.+.|.-... .....+.+|+++|+|.+. + .+..|+. ..++||||-|.|....+.....+-
T Consensus 469 Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyii---k---dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~--- 539 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYII---K---DKALLSKISWKYMIIDEGHRMKNAICKLTDTLN--- 539 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhc---C---CHHHHhccCCcceeecccccccchhhHHHHHhh---
Confidence 33444445532111 011247899999998542 2 2334444 458999999988543322211111
Q ss_pred HHhhhccCCceEEEEEcCCCCC--------------------hHHHHHHhcCCcc--e-eEec------------CCCcc
Q 043190 836 RYISSQTERAVRFIGLSTALAN--------------------AGDLADWLGVGEI--G-LFNF------------KPSVR 880 (1492)
Q Consensus 836 ~~~~~~~~~~~~ii~lSATl~~--------------------~~~~~~~l~~~~~--~-~~~~------------~~~~r 880 (1492)
.... ..+-+++++|+.. ...+..|++.+-. + -... ..-.|
T Consensus 540 ----t~y~-~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLR 614 (1157)
T KOG0386|consen 540 ----THYR-AQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLR 614 (1157)
T ss_pred ----cccc-chhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhh
Confidence 1122 2333566666421 2446667654311 0 0000 00011
Q ss_pred ccCcEEEEec----cCCcc---ccccccccChhHHHHHhhcCCCCCeeEEecC---h---HHHHHHHHHHHHHHhcCCCC
Q 043190 881 PVPLEVHIQG----YPGKF---YCPRMNSMNKPAYAAICTHSPTKPVLIFVSS---R---RQTRLTALDLIQFAASDETP 947 (1492)
Q Consensus 881 ~~~l~~~~~~----~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s---~---~~~~~~a~~L~~~~~~~~~~ 947 (1492)
|+-+...-.. .|++. ....+.+..+..|..+... ..+++.+ + +....+...|++.|. .|
T Consensus 615 PFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~-----g~l~~d~~~g~~g~k~L~N~imqLRKiCN---HP 686 (1157)
T KOG0386|consen 615 PFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNK-----GQLLKDTAKGKKGYKPLFNTIMQLRKLCN---HP 686 (1157)
T ss_pred HHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhC-----CCCCcCchhccccchhhhhHhHHHHHhcC---Cc
Confidence 2111100000 01100 0011111112222222211 1112111 1 112222233333321 11
Q ss_pred ccc----------------CC--CChHHHHHHHhhcCc------------------HHHHHHhccceEeecCCCCHHHHH
Q 043190 948 RQF----------------LG--MPEEDLQMVLSQVTD------------------QNLRQTLQFGIGLHHAGLNDKDRS 991 (1492)
Q Consensus 948 ~~~----------------~~--~~~~~~~~~~~~~~~------------------~~l~~~~~~~v~~~h~~l~~~~R~ 991 (1492)
-.| .. -..+-++..+..++. +.....-.+.-.-+-|....++|-
T Consensus 687 ~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg 766 (1157)
T KOG0386|consen 687 YLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERG 766 (1157)
T ss_pred hhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHH
Confidence 111 00 012333333333321 111222345566778889999999
Q ss_pred HHHHHHhcCC---ceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 992 LVEELFANNK---IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 992 ~v~~~f~~g~---~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
..++.|..-. ...|.+|...+.|+|+...+.||. ||. |..+....|+.-||.|-|.-+.-.++.+.+
T Consensus 767 ~ll~~FN~Pds~yf~FllstragglglNlQtadtvii----fds------dwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 767 DLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVII----FDS------DWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred HHHHHhcCCCCceeeeeeeecccccccchhhcceEEE----ecC------CCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 9999998644 457889999999999997766665 553 334567789999999988666677777665
Q ss_pred CC
Q 043190 1069 EP 1070 (1492)
Q Consensus 1069 ~~ 1070 (1492)
-.
T Consensus 837 v~ 838 (1157)
T KOG0386|consen 837 VN 838 (1157)
T ss_pred hh
Confidence 43
No 285
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=98.19 E-value=1.5e-05 Score=106.01 Aligned_cols=103 Identities=15% Similarity=0.141 Sum_probs=76.2
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhc-CCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRY-EDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
++++||||.|+..|+.+++.|.+..... +.. -...+...||+.+ +|..
T Consensus 698 ~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~-----------------------------~~~~v~~itg~~~--~~~~ 746 (1123)
T PRK11448 698 EGKTLIFAATDAHADMVVRLLKEAFKKKYGQV-----------------------------EDDAVIKITGSID--KPDQ 746 (1123)
T ss_pred CCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCc-----------------------------CccceEEEeCCcc--chHH
Confidence 3689999999999999998887653221 000 0112445677764 5678
Q ss_pred HHHHHhCCCc-cEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCC
Q 043190 160 TERLFSEGLL-KVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQF 221 (1492)
Q Consensus 160 ve~~f~~g~i-~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~ 221 (1492)
+.+.|++|.. +|+||++.|..|+|+|.+..||- +.|.. +..-|+||+||+.|.-.
T Consensus 747 li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf----~rpvk---S~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 747 LIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVF----LRRVR---SRILYEQMLGRATRLCP 802 (1123)
T ss_pred HHHHHhCCCCCeEEEEecccccCCCcccccEEEE----ecCCC---CHHHHHHHHhhhccCCc
Confidence 9999999987 68999999999999998887773 33322 44568999999999753
No 286
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.18 E-value=3.1e-05 Score=102.52 Aligned_cols=201 Identities=19% Similarity=0.236 Sum_probs=112.8
Q ss_pred cccEEEEcccCC---ChHHHHHhcCCCCCCceEeecCCcccccc-eEEEEEeeC----CchhHHHHHhhHHHHHHHHHHH
Q 043190 7 MIRIVGLSATLP---NYLEVAQFLRVNPEMGLFFFDSSYRPIPL-AQQYIGISE----PNFAARNELLSEICYKKVVDSL 78 (1492)
Q Consensus 7 ~~riv~lSATl~---n~~~~a~~l~~~~~~~~~~~~~~~rpv~l-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 78 (1492)
.-.+|++|||+. +.+-+++.+|-. +.....+. ..|.+. ++..+.++. .......... +.+...+.+.+
T Consensus 595 ~~~~il~SATL~~~~~~~~~~~~lGl~-~~~~~~~~--~spf~~~~~~~l~v~~d~~~~~~~~~~~~~-~~ia~~i~~l~ 670 (850)
T TIGR01407 595 FKSLIFTSATLKFSHSFESFPQLLGLT-DVHFNTIE--PTPLNYAENQRVLIPTDAPAIQNKSLEEYA-QEIASYIIEIT 670 (850)
T ss_pred CCeEEEEecccccCCChHHHHHhcCCC-ccccceec--CCCCCHHHcCEEEecCCCCCCCCCChHHHH-HHHHHHHHHHH
Confidence 356899999998 567788888864 21111121 112221 111111111 1111111111 11122233333
Q ss_pred -hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 79 -RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 79 -~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
..++++|||++|.+..+.++..|...... .++.++..|.. ..|
T Consensus 671 ~~~~g~~LVlftS~~~l~~v~~~L~~~~~~-----------------------------------~~~~~l~q~~~-~~r 714 (850)
T TIGR01407 671 AITSPKILVLFTSYEMLHMVYDMLNELPEF-----------------------------------EGYEVLAQGIN-GSR 714 (850)
T ss_pred HhcCCCEEEEeCCHHHHHHHHHHHhhhccc-----------------------------------cCceEEecCCC-ccH
Confidence 24578999999999999998887642111 12223333433 578
Q ss_pred HHHHHHHhCCCccEEEeccccccccCCCcE---EEEEeccceecCCC---------------CCccc-------Cchhhh
Q 043190 158 GLTERLFSEGLLKVLVCTATLAWGVNLPAH---TVVIKGTQLYDPKA---------------GGWRD-------LGMLDI 212 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~---~vVI~~~~~~~~~~---------------~~~~~-------~~~~~~ 212 (1492)
..+.+.|++|.-.||+||+.++.|||+|+. .|||-+...-+|.. .++.. ..+.|-
T Consensus 715 ~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa 794 (850)
T TIGR01407 715 AKIKKRFNNGEKAILLGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQA 794 (850)
T ss_pred HHHHHHHHhCCCeEEEEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHh
Confidence 999999999999999999999999999864 45665543222221 12222 224568
Q ss_pred hhccCCCCCCccceEEEEeCCccHHHHHHHhcCCCc
Q 043190 213 FGRAGRPQFDRSGEGIIITSHDKLAYYLRLLTSQLP 248 (1492)
Q Consensus 213 ~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~~~~~~ 248 (1492)
+||.=|...| .|..+++-..-....|-+.+-...|
T Consensus 795 ~GRlIRs~~D-~G~v~ilD~R~~~~~Yg~~~~~sLp 829 (850)
T TIGR01407 795 LGRLIRREND-RGSIVILDRRLVGKRYGKRFEKSLP 829 (850)
T ss_pred hccccccCCc-eEEEEEEccccccchHHHHHHHhCC
Confidence 8999998765 5766666433233345443333333
No 287
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.15 E-value=1.1e-05 Score=89.29 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=89.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. |++.|..+.-.+. .|+ |+...||-|||+++.+|..-.... |..+=+++...-||..=++.+...+. .+|+
T Consensus 75 g~~-p~~vQll~~l~L~-~G~--laEm~TGEGKTli~~l~a~~~AL~--G~~V~vvT~NdyLA~RD~~~~~~~y~-~LGl 147 (266)
T PF07517_consen 75 GLR-PYDVQLLGALALH-KGR--LAEMKTGEGKTLIAALPAALNALQ--GKGVHVVTSNDYLAKRDAEEMRPFYE-FLGL 147 (266)
T ss_dssp S-----HHHHHHHHHHH-TTS--EEEESTTSHHHHHHHHHHHHHHTT--SS-EEEEESSHHHHHHHHHHHHHHHH-HTT-
T ss_pred CCc-ccHHHHhhhhhcc-cce--eEEecCCCCcHHHHHHHHHHHHHh--cCCcEEEeccHHHhhccHHHHHHHHH-Hhhh
Confidence 544 8888888776664 443 999999999999988876655443 78899999999999998888887665 4599
Q ss_pred EEEEEcCCCCcch-hccCCCcEEEECchhh--hHhhhcccC---ccccCcccEEEEeccccc
Q 043190 765 EMVEMTGDYTPDL-MALLSADIIISTPEKW--DGISRNWHS---RNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 765 ~v~~~~g~~~~~~-~~~~~~~Iiv~Tpe~l--~~l~~~~~~---~~~l~~i~liViDEaH~l 820 (1492)
+++..+++.+.+. +..-.++|+++|...+ +.+..+... ....+.+.++||||||.+
T Consensus 148 sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~ 209 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSI 209 (266)
T ss_dssp -EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHH
T ss_pred ccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceE
Confidence 9999998876443 2334679999999986 323222211 223568899999999944
No 288
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.07 E-value=2.2e-05 Score=99.91 Aligned_cols=143 Identities=16% Similarity=0.200 Sum_probs=87.2
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHH-----HHhhhcc-C--CEEEEEcCCC---
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWK-----DRLVSQL-G--KEMVEMTGDY--- 773 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~-----~~~~~~~-g--~~v~~~~g~~--- 773 (1492)
.++.+.++||+|||.+|+-.|+......+..+.|++||+.++-..+.+.+. ..|.... | +....+.+..
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 589999999999999999999988777667899999999998877765543 3343322 2 2333343321
Q ss_pred ------Ccchh--------ccCCCcEEEECchhhhHh-h-hccc-------CccccCcc----cEEEEecccccCCCCcc
Q 043190 774 ------TPDLM--------ALLSADIIISTPEKWDGI-S-RNWH-------SRNYVKKV----GLMILDEIHLLGAERGP 826 (1492)
Q Consensus 774 ------~~~~~--------~~~~~~Iiv~Tpe~l~~l-~-~~~~-------~~~~l~~i----~liViDEaH~l~~~~g~ 826 (1492)
....+ .....+|+|+|.+.|..- . +... ....+..+ -.||+||.|.+..+ +.
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~-~k 218 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD-NK 218 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc-hH
Confidence 11100 111458999999987542 1 1110 00111111 27999999998532 22
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
.++.+ ..+. +.-++..|||.++
T Consensus 219 ~~~~i----~~ln-----pl~~lrysAT~~~ 240 (986)
T PRK15483 219 FYQAI----EALK-----PQMIIRFGATFPD 240 (986)
T ss_pred HHHHH----HhcC-----cccEEEEeeecCC
Confidence 34333 2221 2235669999976
No 289
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.03 E-value=0.0008 Score=79.43 Aligned_cols=258 Identities=14% Similarity=0.118 Sum_probs=144.7
Q ss_pred CCcEEEECchhhhHhhhc----ccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHh-----------------hh
Q 043190 782 SADIIISTPEKWDGISRN----WHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYI-----------------SS 840 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~----~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~-----------------~~ 840 (1492)
++|||||+|=-|..++.. .....+|+.+.++|+|.||.+....-..+..++..+... ..
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 579999999766555442 234567999999999999976432222333333333211 11
Q ss_pred ccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCcc--------ccCcEEEEeccCCcccccc----ccccChhH
Q 043190 841 QTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVR--------PVPLEVHIQGYPGKFYCPR----MNSMNKPA 907 (1492)
Q Consensus 841 ~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r--------~~~l~~~~~~~~~~~~~~~----~~~~~~~~ 907 (1492)
+...-.|.|++|+.... ...+-.--..+..+......... .+++...+..++....... .....+.+
T Consensus 211 ~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~i 290 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKI 290 (442)
T ss_pred cchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHH
Confidence 11224789999987632 12221110011111111111111 1223333333332221111 11111223
Q ss_pred HHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCH
Q 043190 908 YAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLND 987 (1492)
Q Consensus 908 ~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 987 (1492)
+..+......+.+|||+||--+-..+-+.|.+ -....+.+|--.+.
T Consensus 291 LP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~----------------------------------~~~sF~~i~EYts~ 336 (442)
T PF06862_consen 291 LPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKK----------------------------------ENISFVQISEYTSN 336 (442)
T ss_pred HHHhhhccCCCcEEEEecchhhhHHHHHHHHh----------------------------------cCCeEEEecccCCH
Confidence 33333245667899999998776666555532 13456677878888
Q ss_pred HHHHHHHHHHhcCCceEEEeccccc--cccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCC-CCCCCceEEE
Q 043190 988 KDRSLVEELFANNKIQVLVCTSTLA--WGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGR-PQYDQHGKAV 1064 (1492)
Q Consensus 988 ~~R~~v~~~f~~g~~~vLvaT~~l~--~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR-~g~~~~G~~i 1064 (1492)
.+-...-..|..|+.++|+-|-=+- +-..+.++..||- |.+|.+. .=..+++.+++.... .+....+.|.
T Consensus 337 ~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viF----Y~~P~~p---~fY~El~n~~~~~~~~~~~~~~~~~~ 409 (442)
T PF06862_consen 337 SDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIF----YGPPENP---QFYSELLNMLDESSGGEVDAADATVT 409 (442)
T ss_pred HHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEE----ECCCCCh---hHHHHHHhhhcccccccccccCceEE
Confidence 8888899999999999999997432 5566777777774 7766531 014566666665443 1123467888
Q ss_pred EEecCCcHHHHHHhhc
Q 043190 1065 ILVHEPKKSFYKKFLY 1080 (1492)
Q Consensus 1065 ~l~~~~~~~~~~~~l~ 1080 (1492)
++++.-+.-.+++++.
T Consensus 410 ~lysk~D~~~LErIVG 425 (442)
T PF06862_consen 410 VLYSKYDALRLERIVG 425 (442)
T ss_pred EEecHhHHHHHHHHhC
Confidence 8888776655555543
No 290
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.98 E-value=3.8e-05 Score=86.22 Aligned_cols=68 Identities=22% Similarity=0.396 Sum_probs=50.3
Q ss_pred CCCHHHHHHHHhhhcCCCc-EEEecCCCCCchHHHHHHHHHHh------ccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYHTDNN-VLLGAPTGSGKTISAELAMLHLF------NTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~-vli~apTGsGKT~~~~l~il~~l------~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
++|+-|.+|+..++ +... .+|.||.|+|||......+.... ....+.++++++|+.+.+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~-~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSAL-SSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHC-TSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH-cCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 47899999999998 4555 99999999999976554444441 234689999999999999999888776
No 291
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.96 E-value=7.3e-05 Score=93.51 Aligned_cols=216 Identities=21% Similarity=0.192 Sum_probs=117.4
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecCC-cccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcE
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSS-YRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQA 84 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1492)
-++.+|+-||| |..|.+..-.... - ....+... .+..+....++.......... ..+...+++.+.+.+..|.|+
T Consensus 348 ~~~pvvLgSAT-PSLES~~~~~~g~-y-~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~-~~lS~~Ll~~i~~~l~~geQ~ 423 (730)
T COG1198 348 ENAPVVLGSAT-PSLESYANAESGK-Y-KLLRLTNRAGRARLPRVEIIDMRKEPLETG-RSLSPALLEAIRKTLERGEQV 423 (730)
T ss_pred hCCCEEEecCC-CCHHHHHhhhcCc-e-EEEEccccccccCCCcceEEeccccccccC-ccCCHHHHHHHHHHHhcCCeE
Confidence 46789999999 6666665553321 1 11112111 233344445554432211110 014566778888888999999
Q ss_pred EEEEechHHH--------HHHHH------HH----------HHHHHhcCCccccCCCCchh---------hHHHHHHHhh
Q 043190 85 MVFVHSRKDT--------VKTAQ------KL----------VDLARRYEDLEVFNNDTHPQ---------LSLIKKDVMK 131 (1492)
Q Consensus 85 lVF~~sr~~~--------~~~a~------~l----------~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 131 (1492)
|+|+|.|--+ ..+++ .| +.++..... .....+.-.+ .+.+
T Consensus 424 llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~-~p~~Cp~Cgs~~L~~~G~Gteri------ 496 (730)
T COG1198 424 LLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEP-IPQSCPECGSEHLRAVGPGTERI------ 496 (730)
T ss_pred EEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCC-CCCCCCCCCCCeeEEecccHHHH------
Confidence 9999987533 22211 00 000000000 0000000000 0111
Q ss_pred cCchHHHHHh-cccEEEEcCCCChhh--HHHHHHHHhCCCccEEEeccccccccCCCcEEEEE--e-ccceecCCCCC--
Q 043190 132 SRNKDLIELF-GLAVGVHHAGMLRSD--RGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVI--K-GTQLYDPKAGG-- 203 (1492)
Q Consensus 132 ~~~~~l~~~~-~~gv~~hhagl~~~~--R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI--~-~~~~~~~~~~~-- 203 (1492)
.++|..++ ...|...-++..... =+...+.|.+|+..|||-|-.+|-|.|+|+++.|. + ++-.+.++-+.
T Consensus 497 --eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~E 574 (730)
T COG1198 497 --EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASE 574 (730)
T ss_pred --HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHH
Confidence 23455555 345665555544433 34667899999999999999999999999988654 2 11222222110
Q ss_pred cccCchhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 204 WRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 204 ~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
..---+.|-+|||||.+ ..|.+++=|...+-
T Consensus 575 r~fqll~QvaGRAgR~~--~~G~VvIQT~~P~h 605 (730)
T COG1198 575 RTFQLLMQVAGRAGRAG--KPGEVVIQTYNPDH 605 (730)
T ss_pred HHHHHHHHHHhhhccCC--CCCeEEEEeCCCCc
Confidence 00112567899999987 67999999876653
No 292
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=97.95 E-value=2.9e-05 Score=94.57 Aligned_cols=95 Identities=23% Similarity=0.351 Sum_probs=78.6
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.+.+++|||.+...+..++..+... -++....+..++.+|..
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~~--------------------------------------~~~~~it~~t~~~eR~~ 323 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLAP--------------------------------------GIVEAITGETPKEEREA 323 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcCC--------------------------------------CceEEEECCCCHHHHHH
Confidence 4679999999999998888766421 12556789999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCC
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRP 219 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~ 219 (1492)
+.+.|+.|.+++||++..|.-|||+|..+++|- -.|.. +...|.||+||.=|+
T Consensus 324 il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~----~~~t~---S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 324 ILERFRTGGIKVLVTVKVLDEGVDIPDADVLII----LRPTG---SRRLFIQRLGRGLRP 376 (442)
T ss_pred HHHHHHcCCCCEEEEeeeccceecCCCCcEEEE----eCCCC---cHHHHHHHhhhhccC
Confidence 999999999999999999999999999998884 22211 445599999999996
No 293
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.92 E-value=7.2e-05 Score=79.39 Aligned_cols=57 Identities=26% Similarity=0.313 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
-.|+.|..++.+++ ..+.+++.||.|||||+.+....++.+..+.-.+++|+-|..+
T Consensus 4 p~~~~Q~~~~~al~-~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~ 60 (205)
T PF02562_consen 4 PKNEEQKFALDALL-NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVE 60 (205)
T ss_dssp --SHHHHHHHHHHH-H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--
T ss_pred CCCHHHHHHHHHHH-hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 46889999999998 6789999999999999999999999888766789999999875
No 294
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.88 E-value=6e-05 Score=88.72 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=65.3
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
+++..||.-|..|+.+++ +..-.||.||+|+|||....--+++.... ..+.+|+++|+...+.|+++.+.+. |
T Consensus 406 ~~lpkLN~SQ~~AV~~VL-~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~~~~VLvcApSNiAVDqLaeKIh~t-----g 478 (935)
T KOG1802|consen 406 PNLPKLNASQSNAVKHVL-QRPLSLIQGPPGTGKTVTSATIVYHLARQ-HAGPVLVCAPSNIAVDQLAEKIHKT-----G 478 (935)
T ss_pred CCchhhchHHHHHHHHHH-cCCceeeecCCCCCceehhHHHHHHHHHh-cCCceEEEcccchhHHHHHHHHHhc-----C
Confidence 488899999999999999 67788999999999999876555555444 5889999999999999988876653 6
Q ss_pred CEEEEEc
Q 043190 764 KEMVEMT 770 (1492)
Q Consensus 764 ~~v~~~~ 770 (1492)
++|.-+.
T Consensus 479 LKVvRl~ 485 (935)
T KOG1802|consen 479 LKVVRLC 485 (935)
T ss_pred ceEeeee
Confidence 7766553
No 295
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.85 E-value=6.7e-05 Score=97.92 Aligned_cols=87 Identities=20% Similarity=0.207 Sum_probs=68.4
Q ss_pred ccEEEEcCCCChhhHHHHHHHHhCC---CccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCC
Q 043190 143 LAVGVHHAGMLRSDRGLTERLFSEG---LLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRP 219 (1492)
Q Consensus 143 ~gv~~hhagl~~~~R~~ve~~f~~g---~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~ 219 (1492)
++....||+++.++|..+.+.|.+. ..-+|+||...+.||||...++||. ||+ .|.+....|++|||-|.
T Consensus 512 ~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi----yD~---dWNP~~d~QAidRaHRI 584 (1033)
T PLN03142 512 YQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL----YDS---DWNPQVDLQAQDRAHRI 584 (1033)
T ss_pred CcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE----eCC---CCChHHHHHHHHHhhhc
Confidence 4567789999999999999999753 3467899999999999988777775 554 35666689999999999
Q ss_pred CCCccceEEEEeCCccH
Q 043190 220 QFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 220 ~~d~~G~~i~~~~~~~~ 236 (1492)
|....=.++.++.....
T Consensus 585 GQkk~V~VyRLIt~gTI 601 (1033)
T PLN03142 585 GQKKEVQVFRFCTEYTI 601 (1033)
T ss_pred CCCceEEEEEEEeCCcH
Confidence 96655556666665544
No 296
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.00067 Score=78.33 Aligned_cols=338 Identities=16% Similarity=0.172 Sum_probs=173.9
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEe-cCCCCCc--hHHHHHHHHHHhccC-----------------------------CC
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLG-APTGSGK--TISAELAMLHLFNTQ-----------------------------SD 734 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~-apTGsGK--T~~~~l~il~~l~~~-----------------------------~~ 734 (1492)
..+++.|.+.+..+. +-++++.. ..-|.|+ +-+|.+-+++++.+. ..
T Consensus 215 ~pltalQ~~L~~~m~-~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tR 293 (698)
T KOG2340|consen 215 EPLTALQKELFKIMF-NYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTR 293 (698)
T ss_pred CcchHHHHHHHHHHH-hhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCC
Confidence 468999999998876 66776642 2223455 456667676654210 24
Q ss_pred ceEEEEcccHHHHHHHHHHHHHHhhhc-cCCE--------EEEEcCCCCc---------chh------------------
Q 043190 735 MKVVYIAPLKAIVRERMNDWKDRLVSQ-LGKE--------MVEMTGDYTP---------DLM------------------ 778 (1492)
Q Consensus 735 ~~~l~i~P~r~La~q~~~~~~~~~~~~-~g~~--------v~~~~g~~~~---------~~~------------------ 778 (1492)
+++|+++|+|+-|..+.+.+...+... -|.. -+.+.|+... +-+
T Consensus 294 pkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ft 373 (698)
T KOG2340|consen 294 PKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFT 373 (698)
T ss_pred ceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHH
Confidence 799999999999999998887764311 0100 1122221110 000
Q ss_pred --------ccCCCcEEEECchhhhHhhhcc----cCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccC---
Q 043190 779 --------ALLSADIIISTPEKWDGISRNW----HSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTE--- 843 (1492)
Q Consensus 779 --------~~~~~~Iiv~Tpe~l~~l~~~~----~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~--- 843 (1492)
...++||+||+|=-|..++.+. ....+++.+.++|||-+|.+... .|+.++..+.++..+..
T Consensus 374 kKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~Q---NwEhl~~ifdHLn~~P~k~h 450 (698)
T KOG2340|consen 374 KKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQ---NWEHLLHIFDHLNLQPSKQH 450 (698)
T ss_pred HHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHh---hHHHHHHHHHHhhcCccccc
Confidence 0115799999997776555522 22457899999999999976432 34444444433322111
Q ss_pred ----CceEEEEE-------------cCCCCChHHHHHHhcC---CcceeEecCC-----Cccc--cCcEEEEeccCCccc
Q 043190 844 ----RAVRFIGL-------------STALANAGDLADWLGV---GEIGLFNFKP-----SVRP--VPLEVHIQGYPGKFY 896 (1492)
Q Consensus 844 ----~~~~ii~l-------------SATl~~~~~~~~~l~~---~~~~~~~~~~-----~~r~--~~l~~~~~~~~~~~~ 896 (1492)
..+|...+ |+-. + .++...+.. +-.+.+.+.+ .... +++...+..+.....
T Consensus 451 ~~DfSRVR~wyL~~qsr~~rQtl~Fs~y~-~-~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si 528 (698)
T KOG2340|consen 451 DVDFSRVRMWYLDGQSRYFRQTLLFSRYS-H-PLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSI 528 (698)
T ss_pred CCChhheehheeccHHHHHHHHHHHHhhc-c-HHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCc
Confidence 12333333 2221 1 111111110 0001110000 0111 111111111111110
Q ss_pred cc----cccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHH
Q 043190 897 CP----RMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQ 972 (1492)
Q Consensus 897 ~~----~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 972 (1492)
.. +...........+.. .....+|||.|+--+-.++-..+.+..
T Consensus 529 ~~~~D~RFkyFv~~ImPq~~k-~t~s~~LiyIPSYfDFVRvRNy~K~e~------------------------------- 576 (698)
T KOG2340|consen 529 IETPDARFKYFVDKIMPQLIK-RTESGILIYIPSYFDFVRVRNYMKKEE------------------------------- 576 (698)
T ss_pred ccCchHHHHHHHHhhchhhcc-cccCceEEEecchhhHHHHHHHhhhhh-------------------------------
Confidence 00 000000000111111 123468999999877666665553321
Q ss_pred HhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccc--cccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhc
Q 043190 973 TLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLA--WGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMG 1050 (1492)
Q Consensus 973 ~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~--~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~G 1050 (1492)
.....+|---+...-...-+.|-.|..+||+-|--+- +-.++.++.-||. |.++.+ +.=..+++.|.|
T Consensus 577 ---i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVf----YqpP~~---P~FYsEiinm~~ 646 (698)
T KOG2340|consen 577 ---ISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVF----YQPPNN---PHFYSEIINMSD 646 (698)
T ss_pred ---cchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEE----ecCCCC---cHHHHHHHhhhh
Confidence 0011112122233334455678899999999997543 6678888888886 777754 111678999999
Q ss_pred ccCCCC--CCCceEEEEEecCCcH
Q 043190 1051 RAGRPQ--YDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1051 RagR~g--~~~~G~~i~l~~~~~~ 1072 (1492)
|+.-.| ....-.|.++++.-+.
T Consensus 647 k~~~~gn~d~d~~t~~ilytKyD~ 670 (698)
T KOG2340|consen 647 KTTSQGNTDLDIFTVRILYTKYDR 670 (698)
T ss_pred hhhccCCccccceEEEEEeechhh
Confidence 875433 4455677888776553
No 297
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=97.77 E-value=0.00051 Score=85.83 Aligned_cols=167 Identities=18% Similarity=0.172 Sum_probs=92.5
Q ss_pred HHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 72 KKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 72 ~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
..+.+....|.|+||.|.|...++.++..|.+.... -.+.+|.
T Consensus 417 ~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~-------------------------------------h~vLNAk 459 (925)
T PRK12903 417 KEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIP-------------------------------------HTVLNAK 459 (925)
T ss_pred HHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCC-------------------------------------ceeeccc
Confidence 344444467999999999999999999888754211 1122332
Q ss_pred CChhhHHHHHHHHhCCC-ccEEEeccccccccCCCcE--------EEEEeccceecCCCCCcccCchhhhhhccCCCCCC
Q 043190 152 MLRSDRGLTERLFSEGL-LKVLVCTATLAWGVNLPAH--------TVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD 222 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~-i~vlvaT~tla~Gvnlp~~--------~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d 222 (1492)
-...+-..|- ..|. -.|.|||+.++||.|+--- .+|| ||.+.+... =-.|..|||||-|
T Consensus 460 ~~e~EA~IIa---~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVI-gTerheSrR------IDnQLrGRaGRQG-- 527 (925)
T PRK12903 460 QNAREAEIIA---KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVL-GTDKAESRR------IDNQLRGRSGRQG-- 527 (925)
T ss_pred chhhHHHHHH---hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEE-ecccCchHH------HHHHHhcccccCC--
Confidence 1112222221 4453 4789999999999998422 1444 343322211 0246889999998
Q ss_pred ccceEEEEeCCcc-H-------HHHHHHhcC--CCccccchhHhHHHHH-------HHHHHhCcccCHHHHHHHhhhhhh
Q 043190 223 RSGEGIIITSHDK-L-------AYYLRLLTS--QLPIESQFISSLKDNL-------NAEVALGTVTNVKEACAWLGYTYL 285 (1492)
Q Consensus 223 ~~G~~i~~~~~~~-~-------~~~~~~~~~--~~~ies~l~~~l~~~l-------~~ei~~~~i~~~~~~~~~~~~t~~ 285 (1492)
..|.+-.+.+-+| + +.+.+++.. ..||++.......+.- |..+ ...+-..++.++.=+...|
T Consensus 528 DpGss~f~lSLeD~L~r~f~~~~ri~~~~~~l~~~~i~~~~i~~~ie~AQkkvE~~nfdi-RK~ll~yDdV~n~QR~~IY 606 (925)
T PRK12903 528 DVGESRFFISLDDQLFRRFSNFDKIKEAFKKLGDDEIKSKFFSKALLNAQKKIEGFNFDT-RKNVLDYDDVIRQQRDLIY 606 (925)
T ss_pred CCCcceEEEecchHHHHHhCCHHHHHHHHHhcCCCcccchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 6788777766443 1 222322221 2377777655433322 2111 2223345555555555555
Q ss_pred hhh
Q 043190 286 SIR 288 (1492)
Q Consensus 286 ~~r 288 (1492)
..|
T Consensus 607 ~~R 609 (925)
T PRK12903 607 AQR 609 (925)
T ss_pred HHH
Confidence 444
No 298
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.77 E-value=0.00012 Score=78.12 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=91.8
Q ss_pred CCCHHHHHHHHhhhc--CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 688 HFNPIQTQIFHILYH--TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~--~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
.+++.|.++...+.+ ++.|.+...-+|.|||.+. .|++..+..++..-+.+++| ++|..|.++.+..+++..+|.+
T Consensus 23 liR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~lg~l~~r~ 100 (229)
T PF12340_consen 23 LIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVI-VPMLALALADGSRLVRVIVP-KALLEQMRQMLRSRLGGLLNRR 100 (229)
T ss_pred eeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchH-HHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHhCCe
Confidence 489999999988874 3579999999999999885 57776665544555666666 5899999999999999888888
Q ss_pred EEEEcCCCC--cch-----------hccCCCcEEEECchhhhHhhhcccC----------------ccccCcccEEEEec
Q 043190 766 MVEMTGDYT--PDL-----------MALLSADIIISTPEKWDGISRNWHS----------------RNYVKKVGLMILDE 816 (1492)
Q Consensus 766 v~~~~g~~~--~~~-----------~~~~~~~Iiv~Tpe~l~~l~~~~~~----------------~~~l~~i~liViDE 816 (1492)
+..+.=+.. .+. .......|+++|||.+.++.-.+.. ..++.+...=|+||
T Consensus 101 i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~rdilDE 180 (229)
T PF12340_consen 101 IYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHSRDILDE 180 (229)
T ss_pred eEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCeEeEC
Confidence 776643322 111 1112568999999986544322110 12344556679999
Q ss_pred cccc
Q 043190 817 IHLL 820 (1492)
Q Consensus 817 aH~l 820 (1492)
+|..
T Consensus 181 sDe~ 184 (229)
T PF12340_consen 181 SDEI 184 (229)
T ss_pred chhc
Confidence 9954
No 299
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.71 E-value=0.00018 Score=77.38 Aligned_cols=63 Identities=21% Similarity=0.324 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHhhhcCC-CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYHTD-NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMN 752 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~-~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~ 752 (1492)
+|++-|.+++..++.++ +-.++.||.|+|||.+. ..+...+.. .+.++++++||...+.+..+
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~-~g~~v~~~apT~~Aa~~L~~ 64 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLL-KALAEALEA-AGKRVIGLAPTNKAAKELRE 64 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHH-HHHHHHHHH-TT--EEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHH-HHHHHHHHh-CCCeEEEECCcHHHHHHHHH
Confidence 47899999999997555 45778899999999864 445555555 36899999999988776443
No 300
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.66 E-value=0.0011 Score=88.40 Aligned_cols=204 Identities=17% Similarity=0.157 Sum_probs=114.4
Q ss_pred cccEEEEcccCCC---hHHHHHhcCCCCC-CceEeecCCcccccceEEEEE--eeCCchhHHHHHhhHHHHHHHHHHH-h
Q 043190 7 MIRIVGLSATLPN---YLEVAQFLRVNPE-MGLFFFDSSYRPIPLAQQYIG--ISEPNFAARNELLSEICYKKVVDSL-R 79 (1492)
Q Consensus 7 ~~riv~lSATl~n---~~~~a~~l~~~~~-~~~~~~~~~~rpv~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (1492)
.-.+|++|||+.. ..-+++.+|-... .....+.+.+..-.-...++. .+......... ..+.+.+.+.+.+ .
T Consensus 672 ~~~~iltSATL~~~~~f~~~~~~lGl~~~~~~~~~~~SpF~~~~q~~l~vp~d~p~~~~~~~~~-~~~~la~~i~~l~~~ 750 (928)
T PRK08074 672 KKSVILTSATLTVNGSFDYIIERLGLEDFYPRTLQIPSPFSYEEQAKLMIPTDMPPIKDVPIEE-YIEEVAAYIAKIAKA 750 (928)
T ss_pred CCcEEEEeeecccCCCcHHHHHhcCCCCCCccEEEeCCCCCHHHhcEEEeecCCCCCCCCChHH-HHHHHHHHHHHHHHh
Confidence 4568999999983 4455677876421 112334443321011111221 11111111111 1122223333433 3
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++|||++|.+..+.++..|...... .++.+.-=|+....|..
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~-----------------------------------~~~~ll~Qg~~~~~r~~ 795 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEEL-----------------------------------EGYVLLAQGVSSGSRAR 795 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccc-----------------------------------cCceEEecCCCCCCHHH
Confidence 4678999999999999998888643211 01111122555567889
Q ss_pred HHHHHhCCCccEEEeccccccccCCCc---EEEEEeccceec-CCC---------------CCcccC-------chhhhh
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPA---HTVVIKGTQLYD-PKA---------------GGWRDL-------GMLDIF 213 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~---~~vVI~~~~~~~-~~~---------------~~~~~~-------~~~~~~ 213 (1492)
+.+.|+++.-.||++|..+..|||+|. ..|||-+. +|. |.. .+|... .+.|-+
T Consensus 796 l~~~F~~~~~~iLlG~~sFwEGVD~pg~~l~~viI~kL-PF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~ 874 (928)
T PRK08074 796 LTKQFQQFDKAILLGTSSFWEGIDIPGDELSCLVIVRL-PFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGF 874 (928)
T ss_pred HHHHHHhcCCeEEEecCcccCccccCCCceEEEEEecC-CCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhh
Confidence 999999998899999999999999986 45667654 343 221 123222 235678
Q ss_pred hccCCCCCCccceEEEEeCCccHHHHHHHhcCCCc
Q 043190 214 GRAGRPQFDRSGEGIIITSHDKLAYYLRLLTSQLP 248 (1492)
Q Consensus 214 GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~~~~~~ 248 (1492)
||.=|...| .|..+++-..-....|-+.+-...|
T Consensus 875 GRlIRs~~D-~G~v~ilD~R~~~k~Yg~~~l~sLP 908 (928)
T PRK08074 875 GRLIRTETD-RGTVFVLDRRLTTTSYGKYFLESLP 908 (928)
T ss_pred hhhcccCCc-eEEEEEecCccccchHHHHHHHhCC
Confidence 999998765 5766665444333445443333333
No 301
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.60 E-value=0.00069 Score=83.48 Aligned_cols=193 Identities=18% Similarity=0.167 Sum_probs=104.0
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-||+.|... .++|.+..+.. +. .-+..+|+-....--.+-.. ...+. . .+.+.+.+....|.|+||.
T Consensus 364 kLsGMTGTa~t~~~Ef~~iY~l~----Vv-~IPtnkp~~R~d~~d~iy~t-~~~k~---~-Aii~ei~~~~~~GrPVLVg 433 (764)
T PRK12326 364 TVCGMTGTAVAAGEQLRQFYDLG----VS-VIPPNKPNIREDEADRVYAT-AAEKN---D-AIVEHIAEVHETGQPVLVG 433 (764)
T ss_pred hheeecCCChhHHHHHHHHhCCc----EE-ECCCCCCceeecCCCceEeC-HHHHH---H-HHHHHHHHHHHcCCCEEEE
Confidence 57799999865 55566655543 33 33455664332210000011 11111 1 1223444445789999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
+.|-...+.++..|.+.... .-+++|.=...+=..|- ..|
T Consensus 434 t~sI~~SE~ls~~L~~~gI~-------------------------------------h~vLNAk~~~~EA~IIa---~AG 473 (764)
T PRK12326 434 THDVAESEELAERLRAAGVP-------------------------------------AVVLNAKNDAEEARIIA---EAG 473 (764)
T ss_pred eCCHHHHHHHHHHHHhCCCc-------------------------------------ceeeccCchHhHHHHHH---hcC
Confidence 99999999999888754211 12233331222222222 234
Q ss_pred C-ccEEEeccccccccCCC---------------cEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEe
Q 043190 168 L-LKVLVCTATLAWGVNLP---------------AHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 168 ~-i~vlvaT~tla~Gvnlp---------------~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
. -.|.|||+.+.||.|+- .=..|| ||.+.+... --.|..|||||-| ..|.+-.+.
T Consensus 474 ~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLhVI-gTerheSrR------ID~QLrGRaGRQG--DpGss~f~l 544 (764)
T PRK12326 474 KYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLHVI-GTGRHRSER------LDNQLRGRAGRQG--DPGSSVFFV 544 (764)
T ss_pred CCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcEEE-eccCCchHH------HHHHHhcccccCC--CCCceeEEE
Confidence 3 36889999999998873 122344 343332211 1346889999988 678888777
Q ss_pred CCcc-HH-H------HHHHhcCCCccccchhHhHHHH
Q 043190 232 SHDK-LA-Y------YLRLLTSQLPIESQFISSLKDN 260 (1492)
Q Consensus 232 ~~~~-~~-~------~~~~~~~~~~ies~l~~~l~~~ 260 (1492)
+-+| +- . ....+.+..||++.......++
T Consensus 545 SleDdl~~~f~~~~~~~~~~~~~~~i~~~~~~~~i~~ 581 (764)
T PRK12326 545 SLEDDVVAANLAGEKLPAQPDEDGRITSPKAADLVDH 581 (764)
T ss_pred EcchhHHHhcCchhhhhcCCCCCCcCcChhHHHHHHH
Confidence 6443 11 1 1111223456777665544443
No 302
>PF13245 AAA_19: Part of AAA domain
Probab=97.53 E-value=0.00028 Score=62.32 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=43.1
Q ss_pred HHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhc--cCCCceEEEEcccHHHHHHHHHHH
Q 043190 696 IFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFN--TQSDMKVVYIAPLKAIVRERMNDW 754 (1492)
Q Consensus 696 ~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~--~~~~~~~l~i~P~r~La~q~~~~~ 754 (1492)
++...+.++..++|.||.|||||....-.+...+. ..++.++++++|++..+.++.+++
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34433433556677999999999877766666653 223779999999999999877765
No 303
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.53 E-value=0.0002 Score=84.56 Aligned_cols=67 Identities=18% Similarity=0.287 Sum_probs=57.1
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHH
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWK 755 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~ 755 (1492)
+.+++-|++|+..+.+...-.++.||+|+|||.....-|.+.+.+ +.++|+++||...+.-+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--KKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--CCeEEEEcCchHHHHHHHHHhc
Confidence 368999999999988655778999999999999888888887775 7999999999998888777543
No 304
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.53 E-value=0.00072 Score=74.94 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=98.7
Q ss_pred CCCHHHHHHHHhhh-------c--CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 688 HFNPIQTQIFHILY-------H--TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~-------~--~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
.+...|.+++--+. . ...-+++.-.||.||-....-.|++.+.++ ..+.|+++.+-.|-....++|+. +
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G-r~r~vwvS~s~dL~~Da~RDl~D-I 114 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG-RKRAVWVSVSNDLKYDAERDLRD-I 114 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-CCceEEEECChhhhhHHHHHHHH-h
Confidence 46788888664332 1 234678888999999988777788877663 46799999999999998888887 3
Q ss_pred hhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcc-cCcccc---------CcccEEEEecccccCCC-----
Q 043190 759 VSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNW-HSRNYV---------KKVGLMILDEIHLLGAE----- 823 (1492)
Q Consensus 759 ~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~-~~~~~l---------~~i~liViDEaH~l~~~----- 823 (1492)
+.. .+.+..+.. .........+..|+++|+..|..-.+.. .....+ ..=.+||+||||.....
T Consensus 115 G~~-~i~v~~l~~-~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~ 192 (303)
T PF13872_consen 115 GAD-NIPVHPLNK-FKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSK 192 (303)
T ss_pred CCC-cccceechh-hccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCc
Confidence 322 223332221 1111111235579999998775553211 011111 12359999999977432
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
........+..++.. -++.|++.+|||-
T Consensus 193 ~~sk~g~avl~LQ~~----LP~ARvvY~SATg 220 (303)
T PF13872_consen 193 KPSKTGIAVLELQNR----LPNARVVYASATG 220 (303)
T ss_pred cccHHHHHHHHHHHh----CCCCcEEEecccc
Confidence 123334444444432 2467899999995
No 305
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.46 E-value=0.0016 Score=88.70 Aligned_cols=87 Identities=18% Similarity=0.129 Sum_probs=71.6
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcC--CceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhccc
Q 043190 975 QFGIGLHHAGLNDKDRSLVEELFANN--KIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRA 1052 (1492)
Q Consensus 975 ~~~v~~~h~~l~~~~R~~v~~~f~~g--~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRa 1052 (1492)
+.....++|+++.++|...++.|.++ ..-++++|.+.+.|+|+-...+||. ||+ +..++...|...||
T Consensus 735 ~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~----~d~------~wnp~~~~Qa~dRa 804 (866)
T COG0553 735 GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL----FDP------WWNPAVELQAIDRA 804 (866)
T ss_pred CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE----ecc------ccChHHHHHHHHHH
Confidence 35788999999999999999999986 4556778889999999999999998 442 23467778999999
Q ss_pred CCCCCCCceEEEEEecCCc
Q 043190 1053 GRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1053 gR~g~~~~G~~i~l~~~~~ 1071 (1492)
.|.|..+.-.++.+...+.
T Consensus 805 ~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 805 HRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred HHhcCcceeEEEEeecCCc
Confidence 9988778888888887766
No 306
>PRK10536 hypothetical protein; Provisional
Probab=97.37 E-value=0.00038 Score=75.87 Aligned_cols=60 Identities=12% Similarity=0.148 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
++.-.|..|...+..+. ++..+++.||+|+|||+.+....++.+..+.-.++++.-|...
T Consensus 56 ~i~p~n~~Q~~~l~al~-~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAIE-SKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 55667889999998876 5679999999999999999888887665444566777777754
No 307
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.37 E-value=0.00088 Score=87.18 Aligned_cols=200 Identities=20% Similarity=0.192 Sum_probs=107.6
Q ss_pred cccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEE-EEEeeCCchhHHH-HHhhHHHHHHHHHHHh-cCCc
Q 043190 7 MIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQ-YIGISEPNFAARN-ELLSEICYKKVVDSLR-QGHQ 83 (1492)
Q Consensus 7 ~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~ 83 (1492)
..-.|++||||.....+..+++.......+.+-.-..|.+-... ...++. ...... ..........+.+.+. .++.
T Consensus 403 ~~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~spf~~~~~~~~~v~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 481 (654)
T COG1199 403 VASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSPFNYEEQGQLYVPT-DLPEPREPELLAKLAAYLREILKASPGG 481 (654)
T ss_pred cCcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCCCChhhcceEeccc-cCCCCCChHHHHHHHHHHHHHHhhcCCC
Confidence 34589999999987777777766532222101111112111111 112211 111111 1111222233334332 3458
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+|||++|.+....+++.+...... . .-.-++. ..+....+.
T Consensus 482 ~lvlF~Sy~~l~~~~~~~~~~~~~---~---------------------------------~v~~q~~---~~~~~~l~~ 522 (654)
T COG1199 482 VLVLFPSYEYLKRVAERLKDERST---L---------------------------------PVLTQGE---DEREELLEK 522 (654)
T ss_pred EEEEeccHHHHHHHHHHHhhcCcc---c---------------------------------eeeecCC---CcHHHHHHH
Confidence 999999999998888877643110 0 1112333 333455555
Q ss_pred HhCCCc-cEEEeccccccccCCCc---EEEEEeccceecCCC---------------CCccc-------CchhhhhhccC
Q 043190 164 FSEGLL-KVLVCTATLAWGVNLPA---HTVVIKGTQLYDPKA---------------GGWRD-------LGMLDIFGRAG 217 (1492)
Q Consensus 164 f~~g~i-~vlvaT~tla~Gvnlp~---~~vVI~~~~~~~~~~---------------~~~~~-------~~~~~~~GRAG 217 (1492)
|+.+.= .++|+|..++.|||+|. ..|||-|...-+|.. .+|.. ..+.|-+||+=
T Consensus 523 f~~~~~~~~lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlI 602 (654)
T COG1199 523 FKASGEGLILVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLI 602 (654)
T ss_pred HHHhcCCeEEEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhcccc
Confidence 665444 99999999999999986 467776644322221 11222 23467899999
Q ss_pred CCCCCccceEEEEeCCccHHHHHHHhcCCC
Q 043190 218 RPQFDRSGEGIIITSHDKLAYYLRLLTSQL 247 (1492)
Q Consensus 218 R~~~d~~G~~i~~~~~~~~~~~~~~~~~~~ 247 (1492)
|. .+..|..+++=..-....|.+.+....
T Consensus 603 R~-~~D~G~ivllD~R~~~~~y~~~l~~~l 631 (654)
T COG1199 603 RS-EDDRGVIVLLDKRYATKRYGKLLLDSL 631 (654)
T ss_pred cc-CCCceEEEEecccchhhhHHHHHHHhC
Confidence 95 455788888865544444655544433
No 308
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.36 E-value=0.0045 Score=79.93 Aligned_cols=188 Identities=20% Similarity=0.180 Sum_probs=101.4
Q ss_pred ccEEEEcccCCCh---HHHHHhcCCCC--CCceEeecCCcccccceEEEEEeeCC--chhHHHHHhhHHHHHHHHHHHhc
Q 043190 8 IRIVGLSATLPNY---LEVAQFLRVNP--EMGLFFFDSSYRPIPLAQQYIGISEP--NFAARNELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 8 ~riv~lSATl~n~---~~~a~~l~~~~--~~~~~~~~~~~rpv~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 80 (1492)
.-+|++|||++.. ..+.+.+|-.. ......+.+.+.. . .+..+.++.. ........ .+.+.+.+.+.+..
T Consensus 457 ~~vIltSATL~~~~~f~~~~~~lGL~~~~~~~~~~~~SpF~~-~-~q~~l~vp~~~~~p~~~~~~-~~~~~~~i~~l~~~ 533 (697)
T PRK11747 457 PGAVLTSATLRSLNSFDRFQEQSGLPEKDGDRFLALPSPFDY-P-NQGKLVIPKMRAEPDNEEAH-TAEMAEFLPELLEK 533 (697)
T ss_pred CEEEEEeeeCCCCCchHHHHHHcCCCCCCCceEEEcCCCCCH-H-HccEEEeCCCCCCCCCcHHH-HHHHHHHHHHHHhc
Confidence 4689999999854 44555566541 1222333333311 1 1111112211 11011111 12222333344444
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
++.+|||++|.+..+.++..+.... ...+-.+ +. ..|..+
T Consensus 534 ~gg~LVlFtSy~~l~~v~~~l~~~~------------------------------------~~~ll~Q-~~---~~~~~l 573 (697)
T PRK11747 534 HKGSLVLFASRRQMQKVADLLPRDL------------------------------------RLMLLVQ-GD---QPRQRL 573 (697)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHhc------------------------------------CCcEEEe-CC---chHHHH
Confidence 4558999999999998888775421 0113333 32 246667
Q ss_pred HHHHh----CCCccEEEeccccccccCCCc---EEEEEeccceecCCC---------------CCccc-------Cchhh
Q 043190 161 ERLFS----EGLLKVLVCTATLAWGVNLPA---HTVVIKGTQLYDPKA---------------GGWRD-------LGMLD 211 (1492)
Q Consensus 161 e~~f~----~g~i~vlvaT~tla~Gvnlp~---~~vVI~~~~~~~~~~---------------~~~~~-------~~~~~ 211 (1492)
.+.|+ .|.-.||++|..+..|||+|+ ..|||-+...-.|.. .+|.. +.+.|
T Consensus 574 l~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Q 653 (697)
T PRK11747 574 LEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQ 653 (697)
T ss_pred HHHHHHHhccCCCeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 76676 467789999999999999986 567776543322221 11211 12456
Q ss_pred hhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 212 IFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 212 ~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
-+||.=|...| .|..+++-..-.-..|
T Consensus 654 g~GRlIRs~~D-~G~i~ilD~R~~~~~Y 680 (697)
T PRK11747 654 AVGRLIRSEQD-RGRVTILDRRLLTKRY 680 (697)
T ss_pred HhccccccCCc-eEEEEEEcccccchhH
Confidence 78999997655 6776666443233344
No 309
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=97.34 E-value=0.0039 Score=79.21 Aligned_cols=168 Identities=15% Similarity=0.138 Sum_probs=92.2
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++.||+.|... .++|.+..+.. ++ .-+..+|+-...+--.+-.. ...+. . .+...+.+....|.|+||-
T Consensus 505 kl~GmTGTa~~e~~Ef~~iY~l~----v~-~iPt~kp~~r~d~~d~iy~t-~~~k~---~-ai~~ei~~~~~~grPvLig 574 (970)
T PRK12899 505 KLAGMTGTAITESREFKEIYNLY----VL-QVPTFKPCLRIDHNDEFYMT-EREKY---H-AIVAEIASIHRKGNPILIG 574 (970)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC----EE-ECCCCCCceeeeCCCcEecC-HHHHH---H-HHHHHHHHHHhCCCCEEEE
Confidence 67899999865 34454444432 32 34566664432210000011 11111 1 1223344444788999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|.|-...+.++..|.+.... -.+.+|.=...+-..|- ..|
T Consensus 575 t~si~~se~ls~~L~~~gi~-------------------------------------h~vLNak~~~~Ea~iia---~AG 614 (970)
T PRK12899 575 TESVEVSEKLSRILRQNRIE-------------------------------------HTVLNAKNHAQEAEIIA---GAG 614 (970)
T ss_pred eCcHHHHHHHHHHHHHcCCc-------------------------------------ceecccchhhhHHHHHH---hcC
Confidence 99999998888887653211 11122221122222222 234
Q ss_pred C-ccEEEeccccccccCCCc--------EEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 168 L-LKVLVCTATLAWGVNLPA--------HTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 168 ~-i~vlvaT~tla~Gvnlp~--------~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
. -.|.|||+.++||.|+-- =.+|| ||.+.+.. .--.|..|||||-| ..|.+..+.+-+|
T Consensus 615 ~~g~VTIATNmAGRGTDIkl~~~v~~~GGLhVI-gTer~es~------Rid~Ql~GRagRQG--dpGss~f~lSlED 682 (970)
T PRK12899 615 KLGAVTVATNMAGRGTDIKLDEEAVAVGGLYVI-GTSRHQSR------RIDRQLRGRCARLG--DPGAAKFFLSFED 682 (970)
T ss_pred CCCcEEEeeccccCCcccccCchHHhcCCcEEE-eeccCchH------HHHHHHhcccccCC--CCCceeEEEEcch
Confidence 4 368999999999999831 12333 23332211 11456889999998 7798888876544
No 310
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.33 E-value=0.00039 Score=86.55 Aligned_cols=136 Identities=16% Similarity=0.212 Sum_probs=92.1
Q ss_pred CCCHHHHHHHH---hhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCC--ceEEEEcccHHHHHHHHHHHHHHhhhc-
Q 043190 688 HFNPIQTQIFH---ILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSD--MKVVYIAPLKAIVRERMNDWKDRLVSQ- 761 (1492)
Q Consensus 688 ~l~~~Q~~~i~---~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~--~~~l~i~P~r~La~q~~~~~~~~~~~~- 761 (1492)
.++.||...++ .+|+.+-|.|+.-..|-|||... +.++.++.+.++ +-=||+|||-.+.+ |.-.|+.+
T Consensus 615 qLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQt-ISllAhLACeegnWGPHLIVVpTsviLn-----WEMElKRwc 688 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQT-ISLLAHLACEEGNWGPHLIVVPTSVILN-----WEMELKRWC 688 (1958)
T ss_pred HHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHH-HHHHHHHHhcccCCCCceEEeechhhhh-----hhHHHhhhC
Confidence 47889998776 46777789999999999999875 455666665433 56689999977554 55445444
Q ss_pred cCCEEEEEcCCCCcchhc------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHH
Q 043190 762 LGKEMVEMTGDYTPDLMA------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVS 833 (1492)
Q Consensus 762 ~g~~v~~~~g~~~~~~~~------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~ 833 (1492)
.|+++..+.|.-...... -+..+|.|+++..+..-++.. .-.+..++|+||+|.+..-....|+.++.
T Consensus 689 PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AF----krkrWqyLvLDEaqnIKnfksqrWQAlln 762 (1958)
T KOG0391|consen 689 PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAF----KRKRWQYLVLDEAQNIKNFKSQRWQALLN 762 (1958)
T ss_pred CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHH----HhhccceeehhhhhhhcchhHHHHHHHhc
Confidence 388999998865432221 123589999887542222211 12467899999999986655556766654
No 311
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.16 E-value=0.0033 Score=78.83 Aligned_cols=150 Identities=15% Similarity=0.132 Sum_probs=82.7
Q ss_pred HhhhcCCC-CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHH--HHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 680 YEALYNFS-HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAM--LHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 680 ~~~~~~~~-~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~i--l~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
+..+|+.. ...++|++|+...+ .++.++|.|++|+|||++....+ +......+..++++.+||...|....+....
T Consensus 143 l~~lf~~~~~~~d~Qk~Av~~a~-~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 143 LDALFGPVTDEVDWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred HHHhcCcCCCCCHHHHHHHHHHh-cCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 34455433 23589999999887 67899999999999998753322 2222222346789999999888776665544
Q ss_pred HhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcc----cCccccCcccEEEEecccccCCCCccHHHHHH
Q 043190 757 RLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNW----HSRNYVKKVGLMILDEIHLLGAERGPILEVIV 832 (1492)
Q Consensus 757 ~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~----~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~ 832 (1492)
..... +. ..... .....-..|-.++....... ......-..+++||||+-+++- ..+..++
T Consensus 222 ~~~~~-~~---------~~~~~--~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~---~lm~~ll 286 (615)
T PRK10875 222 ALRQL-PL---------TDEQK--KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVDL---PMMARLI 286 (615)
T ss_pred hhhcc-cc---------chhhh--hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcccH---HHHHHHH
Confidence 33221 11 00000 00011223444433221110 0111233568999999998842 1222233
Q ss_pred HHHHHhhhccCCceEEEEEc
Q 043190 833 SRMRYISSQTERAVRFIGLS 852 (1492)
Q Consensus 833 ~~l~~~~~~~~~~~~ii~lS 852 (1492)
. ..+...|+|++-
T Consensus 287 ~-------al~~~~rlIlvG 299 (615)
T PRK10875 287 D-------ALPPHARVIFLG 299 (615)
T ss_pred H-------hcccCCEEEEec
Confidence 3 234577888874
No 312
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.14 E-value=0.015 Score=73.63 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=49.5
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++.||+.|... .++|.+..+.. +. .-+..||+-....--.+-.. ...+.. .+.+.+.+....|.|+||-
T Consensus 361 kL~GMTGTa~te~~Ef~~iY~l~----vv-~IPtnkp~~R~d~~d~v~~t-~~~K~~----AI~~ei~~~~~~grPVLIg 430 (870)
T CHL00122 361 KLSGMTGTAKTEELEFEKIYNLE----VV-CIPTHRPMLRKDLPDLIYKD-ELSKWR----AIADECLQMHQTGRPILIG 430 (870)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC----EE-ECCCCCCccceeCCCeEEeC-HHHHHH----HHHHHHHHHHhcCCCEEEe
Confidence 57899999865 33455555443 33 34556665433221011111 111111 1223444555789999999
Q ss_pred EechHHHHHHHHHHHHH
Q 043190 88 VHSRKDTVKTAQKLVDL 104 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~ 104 (1492)
|.|-...+.+++.|.+.
T Consensus 431 T~SIe~SE~ls~~L~~~ 447 (870)
T CHL00122 431 TTTIEKSELLSQLLKEY 447 (870)
T ss_pred eCCHHHHHHHHHHHHHc
Confidence 99999999988888654
No 313
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.12 E-value=0.0097 Score=78.03 Aligned_cols=132 Identities=14% Similarity=0.161 Sum_probs=80.3
Q ss_pred HHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChh
Q 043190 76 DSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRS 155 (1492)
Q Consensus 76 ~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~ 155 (1492)
.....++++||+++|.+..+.++..|... . . .+-....+.+
T Consensus 642 ~~~~~~g~~LVLFtS~~~l~~v~~~l~~~--~---~--------------------------------~~l~Qg~~~~-- 682 (820)
T PRK07246 642 ELKQLQQPILVLFNSKKHLLAVSDLLDQW--Q---V--------------------------------SHLAQEKNGT-- 682 (820)
T ss_pred HHHhcCCCEEEEECcHHHHHHHHHHHhhc--C---C--------------------------------cEEEeCCCcc--
Confidence 33345789999999999998887777421 0 0 0211111222
Q ss_pred hHHHHHHHHhCCCccEEEeccccccccCCC---cEEEEEeccceecCCC---------------CCcccCc-------hh
Q 043190 156 DRGLTERLFSEGLLKVLVCTATLAWGVNLP---AHTVVIKGTQLYDPKA---------------GGWRDLG-------ML 210 (1492)
Q Consensus 156 ~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp---~~~vVI~~~~~~~~~~---------------~~~~~~~-------~~ 210 (1492)
|..+.+.|+++.-.||++|..+..|||+| ...|||.+...-.|.. .++...+ +.
T Consensus 683 -~~~l~~~F~~~~~~vLlG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklk 761 (820)
T PRK07246 683 -AYNIKKRFDRGEQQILLGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLK 761 (820)
T ss_pred -HHHHHHHHHcCCCeEEEecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHH
Confidence 45578889999889999999999999997 3566776543222211 1232222 34
Q ss_pred hhhhccCCCCCCccceEEEEeCCccHHHHHHHhcCCCc
Q 043190 211 DIFGRAGRPQFDRSGEGIIITSHDKLAYYLRLLTSQLP 248 (1492)
Q Consensus 211 ~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~~~~~~~~ 248 (1492)
|-+||.=|...| .|.++++=..-.-..|-+.+-...|
T Consensus 762 Qg~GRLIRs~~D-~Gvv~ilD~R~~~k~Yg~~~l~sLP 798 (820)
T PRK07246 762 QAIGRTMRREDQ-KSAVLILDRRILTKSYGKQILASLA 798 (820)
T ss_pred HHhcccccCCCC-cEEEEEECCcccccHHHHHHHHhCC
Confidence 578999997755 6866655433222334333333344
No 314
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.09 E-value=0.0049 Score=77.26 Aligned_cols=140 Identities=14% Similarity=0.200 Sum_probs=77.8
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHH--HHHhccC-CCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAM--LHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~i--l~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
.+.|++++..++ .++.++|+|+.|+|||++....+ +...... ...++++.+||-..|..+.+......... +..
T Consensus 147 ~~~Qk~A~~~al-~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l-~~~- 223 (586)
T TIGR01447 147 QNWQKVAVALAL-KSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL-AAA- 223 (586)
T ss_pred cHHHHHHHHHHh-hCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc-ccc-
Confidence 379999999988 57899999999999998654322 2221111 12579999999887776555544332211 100
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhhhHhhhcc----cCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhcc
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKWDGISRNW----HSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~----~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~ 842 (1492)
.+ ......+-..|-.++....... ........+++|||||+=+++. +.+..++.. .
T Consensus 224 ----~~------~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~---~l~~~ll~a-------l 283 (586)
T TIGR01447 224 ----EA------LIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL---PLMAKLLKA-------L 283 (586)
T ss_pred ----hh------hhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH---HHHHHHHHh-------c
Confidence 00 0001112234444443221110 0011223678999999998842 233333333 2
Q ss_pred CCceEEEEEc
Q 043190 843 ERAVRFIGLS 852 (1492)
Q Consensus 843 ~~~~~ii~lS 852 (1492)
+...|+|++-
T Consensus 284 ~~~~rlIlvG 293 (586)
T TIGR01447 284 PPNTKLILLG 293 (586)
T ss_pred CCCCEEEEEC
Confidence 4567888764
No 315
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=97.07 E-value=0.0046 Score=78.77 Aligned_cols=190 Identities=16% Similarity=0.184 Sum_probs=102.2
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
.+-||+.|... ..+|.+..+.. +. .-+..||+--..+--.+-.. ...+. + .+.+.+.+....|.|+||=
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~L~----Vv-~IPTnrP~~R~D~~D~vy~t-~~eK~---~-Aii~ei~~~~~~GrPVLVG 634 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYKLD----VV-VIPTNRPIARKDKEDLVYKT-KREKY---N-AVIEEITELSEAGRPVLVG 634 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhCCC----EE-ECCCCCCcceecCCCeEecC-HHHHH---H-HHHHHHHHHHHCCCCEEEE
Confidence 45688888754 44454444432 33 33456664322110000001 11111 1 1223444555789999999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
+.|-...+.+++.|....... . +.+|.....+-..|-++=+.|
T Consensus 635 T~SVe~SE~lS~~L~~~gI~H-----------------------------------~--VLNAK~h~~EAeIVA~AG~~G 677 (1112)
T PRK12901 635 TTSVEISELLSRMLKMRKIPH-----------------------------------N--VLNAKLHQKEAEIVAEAGQPG 677 (1112)
T ss_pred eCcHHHHHHHHHHHHHcCCcH-----------------------------------H--HhhccchhhHHHHHHhcCCCC
Confidence 999999998888886532110 0 112222233344444333333
Q ss_pred CccEEEeccccccccCCC--------cEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc-H--
Q 043190 168 LLKVLVCTATLAWGVNLP--------AHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK-L-- 236 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnlp--------~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~-~-- 236 (1492)
.|-|||+.++||-|+- .=.+|| ||.+.+... --.|..|||||-| ..|.+-.+.+-+| +
T Consensus 678 --aVTIATNMAGRGTDIkLg~~V~e~GGL~VI-gTerheSrR------ID~QLrGRaGRQG--DPGsS~f~lSLEDdLmr 746 (1112)
T PRK12901 678 --TVTIATNMAGRGTDIKLSPEVKAAGGLAII-GTERHESRR------VDRQLRGRAGRQG--DPGSSQFYVSLEDNLMR 746 (1112)
T ss_pred --cEEEeccCcCCCcCcccchhhHHcCCCEEE-EccCCCcHH------HHHHHhcccccCC--CCCcceEEEEcccHHHH
Confidence 6889999999999984 223444 344332211 1356889999988 6788877776443 2
Q ss_pred -------HHHHHHhc--CCCccccchhHh
Q 043190 237 -------AYYLRLLT--SQLPIESQFISS 256 (1492)
Q Consensus 237 -------~~~~~~~~--~~~~ies~l~~~ 256 (1492)
..+...++ +..+|++.+...
T Consensus 747 ~Fgs~ri~~~m~~~g~~ege~I~~~~i~k 775 (1112)
T PRK12901 747 LFGSERIAKVMDRMGLKEGEVIQHSMISK 775 (1112)
T ss_pred hhCcHHHHHHHHHcCCCCCCccccHHHHH
Confidence 22222222 345788776543
No 316
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.05 E-value=0.0046 Score=78.53 Aligned_cols=86 Identities=9% Similarity=0.122 Sum_probs=49.0
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-||+.|... .++|.+..+.. ++ .-+..||+-...+--.+-.. ...+. ..+.+.+.+....|.|+||-
T Consensus 386 kLsGMTGTa~te~~Ef~~iY~l~----Vv-~IPTnkP~~R~D~~d~vy~t-~~eK~----~Ai~~ei~~~~~~GrPVLVG 455 (913)
T PRK13103 386 KLSGMTGTADTEAFEFRQIYGLD----VV-VIPPNKPLARKDFNDLVYLT-AEEKY----AAIITDIKECMALGRPVLVG 455 (913)
T ss_pred hhccCCCCCHHHHHHHHHHhCCC----EE-ECCCCCCcccccCCCeEEcC-HHHHH----HHHHHHHHHHHhCCCCEEEE
Confidence 56789999864 44455555443 33 33556665432210000011 11111 11223444455789999999
Q ss_pred EechHHHHHHHHHHHHH
Q 043190 88 VHSRKDTVKTAQKLVDL 104 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~ 104 (1492)
+.|-...+.+++.|.+.
T Consensus 456 T~SVe~SE~ls~~L~~~ 472 (913)
T PRK13103 456 TATIETSEHMSNLLKKE 472 (913)
T ss_pred eCCHHHHHHHHHHHHHc
Confidence 99999999999888754
No 317
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.98 E-value=0.025 Score=71.60 Aligned_cols=86 Identities=13% Similarity=0.120 Sum_probs=48.2
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-||+.|... .++|.+..+.. ++ .-+..||+-...+--.+-.. ...+. . .+.+.+.+....|.|+||-
T Consensus 376 kLsGMTGTa~te~~Ef~~iY~l~----Vv-~IPTnkP~~R~d~~d~vy~t-~~~K~---~-Ai~~ei~~~~~~GrPVLIg 445 (939)
T PRK12902 376 KLAGMTGTAKTEEVEFEKTYKLE----VT-VIPTNRPRRRQDWPDQVYKT-EIAKW---R-AVANETAEMHKQGRPVLVG 445 (939)
T ss_pred hhcccCCCCHHHHHHHHHHhCCc----EE-EcCCCCCeeeecCCCeEEcC-HHHHH---H-HHHHHHHHHHhCCCCEEEe
Confidence 57789999754 33455555443 22 33456664432211001111 11111 1 1223444445789999999
Q ss_pred EechHHHHHHHHHHHHH
Q 043190 88 VHSRKDTVKTAQKLVDL 104 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~ 104 (1492)
+.|-...+.+++.|.+.
T Consensus 446 T~SVe~SE~ls~~L~~~ 462 (939)
T PRK12902 446 TTSVEKSELLSALLQEQ 462 (939)
T ss_pred eCCHHHHHHHHHHHHHc
Confidence 99999999999888754
No 318
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.94 E-value=0.0018 Score=77.02 Aligned_cols=96 Identities=19% Similarity=0.213 Sum_probs=61.0
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSAD 784 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~ 784 (1492)
..++|.|..|||||+++.-.+.+......+.+++++++..+|.....+.+...... ....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~--------------------~~~~ 61 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP--------------------KLKK 61 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc--------------------chhh
Confidence 35799999999999998765555422335789999999999988776666543200 0011
Q ss_pred EEEECchhhhHhhhcccCccccCcccEEEEecccccCC
Q 043190 785 IIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA 822 (1492)
Q Consensus 785 Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~ 822 (1492)
..+..+..+..-.. ........+++|||||||.+..
T Consensus 62 ~~~~~~~~~i~~~~--~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 62 SDFRKPTSFINNYS--ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhhhhhHHHHhhcc--cccccCCcCCEEEEehhHhhhh
Confidence 22333333221111 1223356889999999998854
No 319
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.88 E-value=0.0014 Score=68.55 Aligned_cols=129 Identities=25% Similarity=0.348 Sum_probs=75.1
Q ss_pred CCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHH
Q 043190 917 TKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL 996 (1492)
Q Consensus 917 ~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 996 (1492)
++.+|||++|.+..+.+...+.... ...++.++.. ...++..+++.
T Consensus 9 ~g~~lv~f~Sy~~l~~~~~~~~~~~--------------------------------~~~~~~v~~q--~~~~~~~~l~~ 54 (167)
T PF13307_consen 9 PGGVLVFFPSYRRLEKVYERLKERL--------------------------------EEKGIPVFVQ--GSKSRDELLEE 54 (167)
T ss_dssp SSEEEEEESSHHHHHHHHTT-TSS---------------------------------E-ETSCEEES--TCCHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhhc--------------------------------ccccceeeec--CcchHHHHHHH
Confidence 4889999999998888776552210 0112223333 35678899999
Q ss_pred HhcCCceEEEecc--ccccccCCCC--c-EEEEecceeeeCcc---------------CccccC--C--HHHHHHhhccc
Q 043190 997 FANNKIQVLVCTS--TLAWGVNLPA--H-LVIIKGTEYYDGKT---------------KRYVDF--P--ITDILQMMGRA 1052 (1492)
Q Consensus 997 f~~g~~~vLvaT~--~l~~Gvdip~--~-~~VI~~~~~~~~~~---------------~~~~~~--~--~~~~~Qr~GRa 1052 (1492)
|+++.-.||+|+. .+.+|||+|+ . .+||.|-++-.+.. ..+.++ + ...+.|.+||+
T Consensus 55 ~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~ 134 (167)
T PF13307_consen 55 FKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRL 134 (167)
T ss_dssp HCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC
T ss_pred HHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcc
Confidence 9999999999999 9999999996 3 45666655433211 000111 1 45789999999
Q ss_pred CCCCCCCceEEEEEecCCcHHHHHHhhc
Q 043190 1053 GRPQYDQHGKAVILVHEPKKSFYKKFLY 1080 (1492)
Q Consensus 1053 gR~g~~~~G~~i~l~~~~~~~~~~~~l~ 1080 (1492)
-|.. ++.|..+++-..-....|.+.+.
T Consensus 135 iR~~-~D~g~i~llD~R~~~~~y~~~l~ 161 (167)
T PF13307_consen 135 IRSE-DDYGVIILLDSRFLSKRYGKYLP 161 (167)
T ss_dssp --ST-T-EEEEEEESGGGGGHHHHHH-T
T ss_pred eecc-CCcEEEEEEcCccccchhhhcCc
Confidence 9964 45677666644433344544443
No 320
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.84 E-value=0.0033 Score=63.06 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=16.9
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHL 728 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~ 728 (1492)
+++.++|.||+|+|||.+....+-..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999876555443
No 321
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=96.80 E-value=0.041 Score=71.07 Aligned_cols=53 Identities=13% Similarity=0.264 Sum_probs=47.8
Q ss_pred ccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhcCCchHHHHHHHhcc
Q 043190 489 PLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVKQYLGY 542 (1492)
Q Consensus 489 ~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~~ 542 (1492)
-|+.|| +||+..++.|-.+--|+.++.+++.+++.+++|+++.|+.|.++++.
T Consensus 758 ~L~~lP-gI~~~~a~~ll~~f~si~~l~~as~eeL~~~iG~~~~A~~i~~fl~~ 810 (814)
T TIGR00596 758 FLLKLP-GVTKKNYRNLRKKVKSIRELAKLSQNELNELIGDEEAAKRLYDFLRT 810 (814)
T ss_pred HHHHCC-CCCHHHHHHHHHHcCCHHHHHhCCHHHHHHHhCCHHHHHHHHHHhcc
Confidence 377899 99999999998864599999999999999999988999999999875
No 322
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.70 E-value=0.011 Score=76.45 Aligned_cols=60 Identities=22% Similarity=0.239 Sum_probs=46.2
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC-CceEEEEcccHHHHHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS-DMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~-~~~~l~i~P~r~La~q 749 (1492)
.+++-|.+++..+. .++.++|.|+.|+|||++. -.++..+.... ...++.++||-..|..
T Consensus 323 ~l~~~Q~~Ai~~~~-~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~ 383 (720)
T TIGR01448 323 GLSEEQKQALDTAI-QHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKR 383 (720)
T ss_pred CCCHHHHHHHHHHH-hCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHH
Confidence 48999999999987 6779999999999999865 34455444321 2678889999876653
No 323
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.69 E-value=0.015 Score=62.30 Aligned_cols=123 Identities=17% Similarity=0.180 Sum_probs=69.5
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEE--EEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCC
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVV--YIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l--~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~ 782 (1492)
+.+++.||||+|||+...-...+...+ +.++. -+=..|.=|.++.+.+.+.+ |+.+.......
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l----~vp~~~~~~~~--------- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEIL----GVPFYVARTES--------- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHH----TEEEEESSTTS---------
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHh----ccccchhhcch---------
Confidence 357899999999998776555444433 33333 33346777777777766654 65544322111
Q ss_pred CcEEEECchh-hhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 783 ADIIISTPEK-WDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 783 ~~Iiv~Tpe~-l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
.|.. +...++. ...++.++|+||-+-+ .+.-...+..++.+.....+.-.++.+|||...
T Consensus 67 ------~~~~~~~~~l~~----~~~~~~D~vlIDT~Gr-----~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 67 ------DPAEIAREALEK----FRKKGYDLVLIDTAGR-----SPRDEELLEELKKLLEALNPDEVHLVLSATMGQ 127 (196)
T ss_dssp ------CHHHHHHHHHHH----HHHTTSSEEEEEE-SS-----SSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGG
T ss_pred ------hhHHHHHHHHHH----HhhcCCCEEEEecCCc-----chhhHHHHHHHHHHhhhcCCccceEEEecccCh
Confidence 1111 1122221 1124578999999863 333444555555555444556677888999854
No 324
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.68 E-value=0.023 Score=67.25 Aligned_cols=126 Identities=15% Similarity=0.214 Sum_probs=68.9
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhcc--CCCceEEE--EcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNT--QSDMKVVY--IAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~--~~~~~~l~--i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~ 779 (1492)
+..+++.||||+|||+.+.-.+...... ..+.++.+ +=+.|.-+.++...|.+. +|+.+..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~----lgvpv~~----------- 238 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDI----MGIPVKA----------- 238 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhc----CCcceEe-----------
Confidence 4678999999999998765443332211 12334433 334566666555554443 2544321
Q ss_pred cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCc-eEEEEEcCCCCCh
Q 043190 780 LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERA-VRFIGLSTALANA 858 (1492)
Q Consensus 780 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~-~~ii~lSATl~~~ 858 (1492)
+-+++.+...+.+ +.+.++|+||++.....+ .. -+.+++.+......+ -.++.+|||.. .
T Consensus 239 -------~~~~~~l~~~L~~------~~~~DlVLIDTaGr~~~~----~~-~l~el~~~l~~~~~~~e~~LVlsat~~-~ 299 (388)
T PRK12723 239 -------IESFKDLKEEITQ------SKDFDLVLVDTIGKSPKD----FM-KLAEMKELLNACGRDAEFHLAVSSTTK-T 299 (388)
T ss_pred -------eCcHHHHHHHHHH------hCCCCEEEEcCCCCCccC----HH-HHHHHHHHHHhcCCCCeEEEEEcCCCC-H
Confidence 1134444443333 357899999999866321 11 144444443333323 46788999975 4
Q ss_pred HHHHH
Q 043190 859 GDLAD 863 (1492)
Q Consensus 859 ~~~~~ 863 (1492)
.++.+
T Consensus 300 ~~~~~ 304 (388)
T PRK12723 300 SDVKE 304 (388)
T ss_pred HHHHH
Confidence 44443
No 325
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.56 E-value=0.0052 Score=72.36 Aligned_cols=70 Identities=20% Similarity=0.244 Sum_probs=55.5
Q ss_pred CCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
+|+-|.+++.. .+.+++|.|..|||||.+...-+...+... +..+++++++|++.|.++.+++...+...
T Consensus 1 l~~eQ~~~i~~---~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~ 72 (315)
T PF00580_consen 1 LTDEQRRIIRS---TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEE 72 (315)
T ss_dssp S-HHHHHHHHS----SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHhC---CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCcc
Confidence 57889999987 367999999999999999887777766543 45789999999999999988888766543
No 326
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.53 E-value=0.015 Score=74.78 Aligned_cols=71 Identities=15% Similarity=0.149 Sum_probs=52.9
Q ss_pred EEEEcCCCChhhHHHHHHHH----------------------h----CCCccEEEeccccccccCCCcEEEEEeccceec
Q 043190 145 VGVHHAGMLRSDRGLTERLF----------------------S----EGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYD 198 (1492)
Q Consensus 145 v~~hhagl~~~~R~~ve~~f----------------------~----~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~ 198 (1492)
+.++|+--+..+|..+|+.. + .+...|+|||.+.+.|+|+...-+|.. ..
T Consensus 789 ~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~dfd~~~~~-~~--- 864 (1110)
T TIGR02562 789 LCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHDYDWAIAD-PS--- 864 (1110)
T ss_pred EEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecccCCeeeec-cC---
Confidence 77789999999999888664 1 257899999999999999976544441 11
Q ss_pred CCCCCcccCchhhhhhccCCCCCCccc
Q 043190 199 PKAGGWRDLGMLDIFGRAGRPQFDRSG 225 (1492)
Q Consensus 199 ~~~~~~~~~~~~~~~GRAGR~~~d~~G 225 (1492)
...+.+|++||.-|.|....+
T Consensus 865 ------~~~sliQ~aGR~~R~~~~~~~ 885 (1110)
T TIGR02562 865 ------SMRSIIQLAGRVNRHRLEKVQ 885 (1110)
T ss_pred ------cHHHHHHHhhcccccccCCCC
Confidence 223589999999998865543
No 327
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.51 E-value=0.022 Score=66.67 Aligned_cols=123 Identities=14% Similarity=0.165 Sum_probs=66.4
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc--cHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhc
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP--LKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P--~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~ 779 (1492)
..+..+++.||||+|||+.+...........+..++.++.. .|.-+.++...|.+.+ |+.+..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~----gv~~~~----------- 199 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKIL----GVPVHA----------- 199 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHc----CCceEe-----------
Confidence 35789999999999999977655544433322234444432 2444555555554433 443322
Q ss_pred cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 780 LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 780 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
+.+++.+...+.+ +.+.++|+||++-... +...+...+..+. ......-+++.+|||...
T Consensus 200 -------~~~~~~l~~~l~~------l~~~DlVLIDTaG~~~--~d~~l~e~La~L~---~~~~~~~~lLVLsAts~~ 259 (374)
T PRK14722 200 -------VKDGGDLQLALAE------LRNKHMVLIDTIGMSQ--RDRTVSDQIAMLH---GADTPVQRLLLLNATSHG 259 (374)
T ss_pred -------cCCcccHHHHHHH------hcCCCEEEEcCCCCCc--ccHHHHHHHHHHh---ccCCCCeEEEEecCccCh
Confidence 2233333333333 4456899999996431 2222223333332 222234567888999744
No 328
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.47 E-value=0.009 Score=66.92 Aligned_cols=66 Identities=24% Similarity=0.289 Sum_probs=50.3
Q ss_pred hhcCCCCCCHHHHHHHHhhhcCC-CcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcccHHHH
Q 043190 682 ALYNFSHFNPIQTQIFHILYHTD-NNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~~~~~~~-~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P~r~La 747 (1492)
..+|+.-.|..|+-|+..+++.+ +-|.+.|+-|||||+.++.+.+.... .....++++.=|+..+.
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG 289 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVG 289 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcc
Confidence 55688888899999999998443 34677899999999999887776543 33457888888886643
No 329
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.47 E-value=0.021 Score=74.15 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q 749 (1492)
.|++-|.+++..++.+++.++|.|+.|+|||+..- ++...+.. .+.+++.++||-..|..
T Consensus 352 ~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~-~i~~~~~~-~g~~V~~~ApTg~Aa~~ 411 (744)
T TIGR02768 352 RLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLK-AAREAWEA-AGYRVIGAALSGKAAEG 411 (744)
T ss_pred CCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHH-HHHHHHHh-CCCeEEEEeCcHHHHHH
Confidence 48999999999988656788999999999998643 34444433 37889999999765543
No 330
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.45 E-value=0.0073 Score=76.83 Aligned_cols=68 Identities=19% Similarity=0.286 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
..+++.|.+++..++.+...++|.||+|+|||....-.+.+.+.. +.++++++|+...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~--g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKR--GLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEEcCcHHHHHHHHHHHHh
Confidence 468999999999988555789999999999998776555555543 66999999999999888777654
No 331
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=96.41 E-value=0.019 Score=75.49 Aligned_cols=60 Identities=10% Similarity=-0.002 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q 749 (1492)
.|++-|.+++..++.+++.++|.|+.|+|||++ +-++.+.+.. .+.+++.++||-..|..
T Consensus 346 ~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-~G~~V~~~ApTGkAA~~ 405 (988)
T PRK13889 346 VLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-AGYEVRGAALSGIAAEN 405 (988)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-cCCeEEEecCcHHHHHH
Confidence 489999999999885566789999999999986 3445554443 47889999999765543
No 332
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.36 E-value=0.013 Score=72.17 Aligned_cols=49 Identities=24% Similarity=0.265 Sum_probs=40.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~ 751 (1492)
+.-|+=|.+.||+|||.||+-.|+..-+..+-.+.+++||+.|.-..++
T Consensus 73 ~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~ 121 (985)
T COG3587 73 DKLNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVF 121 (985)
T ss_pred CcceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhH
Confidence 3347889999999999999999998776666789999999998765533
No 333
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.30 E-value=0.017 Score=71.66 Aligned_cols=71 Identities=21% Similarity=0.342 Sum_probs=49.7
Q ss_pred CCCCCCHHHHHHHHhhh---cCCCcEEEecCCCCCchHHHHHHHH---HHhccC--------------------------
Q 043190 685 NFSHFNPIQTQIFHILY---HTDNNVLLGAPTGSGKTISAELAML---HLFNTQ-------------------------- 732 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~---~~~~~vli~apTGsGKT~~~~l~il---~~l~~~-------------------------- 732 (1492)
+|. |+|.|...+..++ ....+.++.+|||+|||++.+-..+ +.....
T Consensus 19 P~q-pY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s 97 (945)
T KOG1132|consen 19 PFQ-PYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKS 97 (945)
T ss_pred cCC-cchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCch
Confidence 444 7999988666543 4667899999999999986654333 333200
Q ss_pred -----C------CceEEEEcccHHHHHHHHHHHHH
Q 043190 733 -----S------DMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 733 -----~------~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
+ -+++.|-.-|..-..|+.+++++
T Consensus 98 ~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrr 132 (945)
T KOG1132|consen 98 EEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRR 132 (945)
T ss_pred hhhcCccccccCCceEEEecchHHHHHHHHHHHhh
Confidence 1 24678888888878888888876
No 334
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.28 E-value=0.036 Score=72.32 Aligned_cols=186 Identities=15% Similarity=0.122 Sum_probs=102.2
Q ss_pred ccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeC--C-------chhHH--HHHhhHHHHHHHHH
Q 043190 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISE--P-------NFAAR--NELLSEICYKKVVD 76 (1492)
Q Consensus 8 ~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~--~-------~~~~~--~~~~~~~~~~~~~~ 76 (1492)
--+|++||||+-.+.+++.|+...+... ....++|-++....+.. + .+..+ ...+.. +.+.+.+
T Consensus 442 ~svil~SgTL~p~~~~~~~Lg~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~-l~~~i~~ 516 (705)
T TIGR00604 442 RSVILASGTLSPLDAFPRNLGFNPVSQD----SPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRN-LGELLVE 516 (705)
T ss_pred CEEEEecccCCcHHHHHHHhCCCCccce----ecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHH-HHHHHHH
Confidence 3589999999999999999987522111 11233343332222211 1 11111 111111 2223333
Q ss_pred HHh-cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChh
Q 043190 77 SLR-QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRS 155 (1492)
Q Consensus 77 ~~~-~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~ 155 (1492)
..+ -++.+|||.+|-..-+.++..+.+..... .+.. .+.+-+-.-+. .
T Consensus 517 ~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~-------------------~i~~----------~k~i~~E~~~~--~ 565 (705)
T TIGR00604 517 FSKIIPDGIVVFFPSYSYLENIVSTWKEMGILE-------------------NIEK----------KKLIFVETKDA--Q 565 (705)
T ss_pred HhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHH-------------------HHhc----------CCCEEEeCCCc--c
Confidence 333 35679999999998888887765421100 0000 00122211121 5
Q ss_pred hHHHHHHHHhC----CCccEEEec--cccccccCCCc---EEEEEeccceecCCC----------------CCc---cc-
Q 043190 156 DRGLTERLFSE----GLLKVLVCT--ATLAWGVNLPA---HTVVIKGTQLYDPKA----------------GGW---RD- 206 (1492)
Q Consensus 156 ~R~~ve~~f~~----g~i~vlvaT--~tla~Gvnlp~---~~vVI~~~~~~~~~~----------------~~~---~~- 206 (1492)
++..+.+.|+. |.-.||+|+ ..++.|||+|+ +.|||-|...-++.. +++ -.
T Consensus 566 ~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 645 (705)
T TIGR00604 566 ETSDALERYKQAVSEGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEF 645 (705)
T ss_pred hHHHHHHHHHHHHhcCCceEEEEecCCcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHH
Confidence 67888888864 455699999 89999999986 678887754322211 011 00
Q ss_pred ---CchhhhhhccCCCCCCccceEEEE
Q 043190 207 ---LGMLDIFGRAGRPQFDRSGEGIII 230 (1492)
Q Consensus 207 ---~~~~~~~GRAGR~~~d~~G~~i~~ 230 (1492)
..+.|-+||+=|...| .|..+++
T Consensus 646 ~a~~~v~QaiGR~IR~~~D-~G~iill 671 (705)
T TIGR00604 646 DAMRAVNQAIGRVIRHKDD-YGSIVLL 671 (705)
T ss_pred HHHHHHHHHhCccccCcCc-eEEEEEE
Confidence 1234678999998765 6765555
No 335
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=96.23 E-value=0.047 Score=70.38 Aligned_cols=116 Identities=18% Similarity=0.137 Sum_probs=70.8
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcC-Ccc-ccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCC--hhh
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYE-DLE-VFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGML--RSD 156 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~--~~~ 156 (1492)
+++++|||.+|..|....+.|.+...... ... ..+...... ..+ +...+.+.. .+ +.. .+.
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~-~~~---------~~~~~~~~~----~~-~~~~~~~~ 578 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDD-AEI---------RDYNKHIRT----KF-DKSDGFEI 578 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccch-hHH---------HHHHHHhcc----cc-ccchhhhH
Confidence 47899999999999999988876544321 110 011000000 000 001111110 01 011 123
Q ss_pred HHHHHHHHhC-CCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCC
Q 043190 157 RGLTERLFSE-GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRP 219 (1492)
Q Consensus 157 R~~ve~~f~~-g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~ 219 (1492)
+..+.+.|++ +.+++||+++-|..|.|.|...+++ .| .++.....+|++||+-|+
T Consensus 579 ~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLy-----ld---Kplk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 579 YYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLY-----LD---KPLKYHGLLQAIARTNRI 634 (667)
T ss_pred HHHHHHHhcCCCCceEEEEEcccccccCCCccceEE-----Ee---ccccccHHHHHHHHhccc
Confidence 4567888976 7899999999999999999988887 33 223444589999999995
No 336
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.22 E-value=0.029 Score=65.13 Aligned_cols=74 Identities=18% Similarity=0.304 Sum_probs=51.5
Q ss_pred hhcCCCCCCHHHHHHHH---hhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHH
Q 043190 682 ALYNFSHFNPIQTQIFH---ILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWK 755 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~---~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~ 755 (1492)
-+|+|...+|-|-+-.. ..++.+.+.++.+|+|+|||.+.+-.++...... ...+.+|..-|..=++....+++
T Consensus 10 v~FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 10 VYFPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred EecCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHH
Confidence 45788889999988543 4566778999999999999987665555543332 35688888777654444444443
No 337
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=96.19 E-value=0.0061 Score=63.75 Aligned_cols=124 Identities=22% Similarity=0.249 Sum_probs=73.2
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++.+|||++|.+..+.+...+.+... ..++.+... ....+..
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~-----------------------------------~~~~~v~~q--~~~~~~~ 50 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLE-----------------------------------EKGIPVFVQ--GSKSRDE 50 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E------------------------------------ETSCEEES--TCCHHHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcc-----------------------------------cccceeeec--CcchHHH
Confidence 357899999999998888776643211 011223332 3667888
Q ss_pred HHHHHhCCCccEEEecc--ccccccCCC---cEEEEEeccceecCCCC---------------Cccc-------Cchhhh
Q 043190 160 TERLFSEGLLKVLVCTA--TLAWGVNLP---AHTVVIKGTQLYDPKAG---------------GWRD-------LGMLDI 212 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~--tla~Gvnlp---~~~vVI~~~~~~~~~~~---------------~~~~-------~~~~~~ 212 (1492)
+.+.|+++.-.||+|+. .++.|||+| ...|||-|...-.+..- .+.. ....|-
T Consensus 51 ~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa 130 (167)
T PF13307_consen 51 LLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQA 130 (167)
T ss_dssp HHHHHCCSSSEEEEEETTSCCGSSS--ECESEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHH
T ss_pred HHHHHHhccCeEEEEEecccEEEeecCCCchhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhh
Confidence 88999999999999999 999999999 56788877554333210 0111 113457
Q ss_pred hhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 213 FGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 213 ~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
+||+=|...| .|..+++-..-....|.+
T Consensus 131 ~GR~iR~~~D-~g~i~llD~R~~~~~y~~ 158 (167)
T PF13307_consen 131 IGRLIRSEDD-YGVIILLDSRFLSKRYGK 158 (167)
T ss_dssp HHCC--STT--EEEEEEESGGGGGHHHHH
T ss_pred cCcceeccCC-cEEEEEEcCccccchhhh
Confidence 8999997654 576666644333334443
No 338
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.10 E-value=0.021 Score=68.15 Aligned_cols=124 Identities=22% Similarity=0.352 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHhhh-----cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHH-H-HHHHHHhhh
Q 043190 688 HFNPIQTQIFHILY-----HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRER-M-NDWKDRLVS 760 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~-----~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~-~-~~~~~~~~~ 760 (1492)
+||+-|++++..++ ..+.++.|.||-|+|||.++- .+...+.. .+..+++++||-..|..+ - ..+...|
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~-~~~~~~~~a~tg~AA~~i~~G~T~hs~f-- 76 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS-RGKKVLVTAPTGIAAFNIPGGRTIHSFF-- 76 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc-ccceEEEecchHHHHHhccCCcchHHhc--
Confidence 47889999988772 367899999999999998753 34444443 467899999997755543 1 1111111
Q ss_pred ccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhh
Q 043190 761 QLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISS 840 (1492)
Q Consensus 761 ~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~ 840 (1492)
++.+.. . ..... .+++-. .....+..++++||||+=+++. ..++.+-.+++.+..
T Consensus 77 --~i~~~~-------~----~~~~~---~~~~~~------~~~~~l~~~~~lIiDEism~~~---~~l~~i~~~lr~i~~ 131 (364)
T PF05970_consen 77 --GIPINN-------N----EKSQC---KISKNS------RLRERLRKADVLIIDEISMVSA---DMLDAIDRRLRDIRK 131 (364)
T ss_pred --Cccccc-------c----ccccc---cccccc------hhhhhhhhheeeecccccchhH---HHHHHHHHhhhhhhc
Confidence 221110 0 00000 221111 1234477899999999998843 355566566665543
No 339
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.09 E-value=0.025 Score=57.72 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=25.0
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
+..+++.||+|+|||..+.... ..+.. .+..++++...
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~-~~~~~-~~~~v~~~~~~ 56 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIA-NELFR-PGAPFLYLNAS 56 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHH-HHhhc-CCCCeEEEehh
Confidence 6789999999999998654433 33322 24556665544
No 340
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=96.00 E-value=0.0064 Score=51.06 Aligned_cols=52 Identities=21% Similarity=0.345 Sum_probs=45.5
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhc
Q 043190 1321 ALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQ 1372 (1492)
Q Consensus 1321 ~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~ 1372 (1492)
.|.++||+|+..+++|.+.|+.|+++|...+.+++..+ +++...+.|...++
T Consensus 6 ~L~~I~Gig~~~a~~L~~~G~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 6 DLLSIPGIGPKRAEKLYEAGIKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHTSTTCHHHHHHHHHHTTCSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred hhccCCCCCHHHHHHHHhcCCCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 37899999999999999999999999999999998887 66777788877654
No 341
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.98 E-value=0.14 Score=59.52 Aligned_cols=126 Identities=14% Similarity=0.247 Sum_probs=75.2
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCce-EEEEcc-cHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMK-VVYIAP-LKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~-~l~i~P-~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
++.+.+.||||.|||+...-...+.....+..+ .++..- .|.=|.++.+.+.+. +|+.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~i----m~vp~--------------- 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADI----MGVPL--------------- 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHH----hCCce---------------
Confidence 789999999999998865544444432222333 344444 455566666654443 35443
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHH
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDL 861 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~ 861 (1492)
.++-+|.-|...+.. +.+.++|.||=+- +++.=...++.|+.+.......-..+.+|||. ..+++
T Consensus 264 ---~vv~~~~el~~ai~~------l~~~d~ILVDTaG-----rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~~dl 328 (407)
T COG1419 264 ---EVVYSPKELAEAIEA------LRDCDVILVDTAG-----RSQYDKEKIEELKELIDVSHSIEVYLVLSATT-KYEDL 328 (407)
T ss_pred ---EEecCHHHHHHHHHH------hhcCCEEEEeCCC-----CCccCHHHHHHHHHHHhccccceEEEEEecCc-chHHH
Confidence 244566666554443 5677899999875 33333345566665555444555677889996 55555
Q ss_pred HH
Q 043190 862 AD 863 (1492)
Q Consensus 862 ~~ 863 (1492)
.+
T Consensus 329 ke 330 (407)
T COG1419 329 KE 330 (407)
T ss_pred HH
Confidence 54
No 342
>PRK06526 transposase; Provisional
Probab=95.81 E-value=0.058 Score=60.38 Aligned_cols=37 Identities=24% Similarity=0.319 Sum_probs=26.5
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI 740 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i 740 (1492)
..+.|++++||+|+|||..+.......... +.+++|+
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~--g~~v~f~ 132 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQA--GHRVLFA 132 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHC--CCchhhh
Confidence 467899999999999998776544444432 5566554
No 343
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.81 E-value=0.058 Score=71.48 Aligned_cols=123 Identities=15% Similarity=0.202 Sum_probs=76.1
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV 767 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~ 767 (1492)
.|++-|.+++..+..+++-++|.|+.|+|||++.- ++.+.+.. .+.+++-++||-.-|... .+ ..|+...
T Consensus 381 ~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~-~~~~~~e~-~G~~V~g~ApTgkAA~~L----~e----~~Gi~a~ 450 (1102)
T PRK13826 381 RLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMK-AAREAWEA-AGYRVVGGALAGKAAEGL----EK----EAGIQSR 450 (1102)
T ss_pred CCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHH-HHHHHHHH-cCCeEEEEcCcHHHHHHH----HH----hhCCCee
Confidence 48999999999886567789999999999998643 34444433 478999999997765442 22 1143322
Q ss_pred EEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceE
Q 043190 768 EMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVR 847 (1492)
Q Consensus 768 ~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ 847 (1492)
|-.+|. ++-......+..-+++||||+.+++. ..+..++.... ....+
T Consensus 451 ---------------------TIas~l--l~~~~~~~~l~~~~vlVIDEAsMv~~---~~m~~Ll~~~~------~~gar 498 (1102)
T PRK13826 451 ---------------------TLSSWE--LRWNQGRDQLDNKTVFVLDEAGMVAS---RQMALFVEAVT------RAGAK 498 (1102)
T ss_pred ---------------------eHHHHH--hhhccCccCCCCCcEEEEECcccCCH---HHHHHHHHHHH------hcCCE
Confidence 222211 01001123356678999999999853 23444444332 23567
Q ss_pred EEEEc
Q 043190 848 FIGLS 852 (1492)
Q Consensus 848 ii~lS 852 (1492)
+|++-
T Consensus 499 vVLVG 503 (1102)
T PRK13826 499 LVLVG 503 (1102)
T ss_pred EEEEC
Confidence 77764
No 344
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.75 E-value=0.16 Score=59.03 Aligned_cols=122 Identities=16% Similarity=0.199 Sum_probs=62.4
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
.+.+.+.||||+|||+.+........ . .+.++.++. |.|.-+.++...+.+. .|+.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~-~-~GkkVglI~aDt~RiaAvEQLk~yae~----lgipv~-------------- 300 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH-G-KKKTVGFITTDHSRIGTVQQLQDYVKT----IGFEVI-------------- 300 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-H-cCCcEEEEecCCcchHHHHHHHHHhhh----cCCcEE--------------
Confidence 46889999999999987655444433 2 244554443 4454444444443332 133222
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
...+|..+...+..... -.++++|+||-+=....+ ...+..+..+.....+...++.+|||...
T Consensus 301 ----v~~d~~~L~~aL~~lk~---~~~~DvVLIDTaGRs~kd-----~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 301 ----AVRDEAAMTRALTYFKE---EARVDYILIDTAGKNYRA-----SETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred ----ecCCHHHHHHHHHHHHh---ccCCCEEEEeCccccCcC-----HHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 12356555444433111 125789999988643211 12233333332222334445668998643
No 345
>PRK14974 cell division protein FtsY; Provisional
Probab=95.64 E-value=0.12 Score=59.93 Aligned_cols=124 Identities=15% Similarity=0.234 Sum_probs=64.6
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc--cHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP--LKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P--~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
...+++.||+|+|||+.....+. .+.. .+.+++++.. .|.-+.++...+...+ |+.+.. +....
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~-~l~~-~g~~V~li~~Dt~R~~a~eqL~~~a~~l----gv~v~~--~~~g~------ 205 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY-YLKK-NGFSVVIAAGDTFRAGAIEQLEEHAERL----GVKVIK--HKYGA------ 205 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH-HHHH-cCCeEEEecCCcCcHHHHHHHHHHHHHc----CCceec--ccCCC------
Confidence 35688999999999986554333 3333 3556666653 3454554455444433 554432 11111
Q ss_pred CCcEEEECchh-hhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 782 SADIIISTPEK-WDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 782 ~~~Iiv~Tpe~-l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
.|.. +...++.. .....++|+||.++.+..+ ..++..++.+.....+...++.++||..+
T Consensus 206 -------dp~~v~~~ai~~~----~~~~~DvVLIDTaGr~~~~-----~~lm~eL~~i~~~~~pd~~iLVl~a~~g~ 266 (336)
T PRK14974 206 -------DPAAVAYDAIEHA----KARGIDVVLIDTAGRMHTD-----ANLMDELKKIVRVTKPDLVIFVGDALAGN 266 (336)
T ss_pred -------CHHHHHHHHHHHH----HhCCCCEEEEECCCccCCc-----HHHHHHHHHHHHhhCCceEEEeeccccch
Confidence 1111 11111110 1235679999999976322 12233333333333456777888998754
No 346
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.61 E-value=0.032 Score=69.92 Aligned_cols=122 Identities=19% Similarity=0.169 Sum_probs=78.4
Q ss_pred CCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
+..+|..|++|+..++...+-.+|.|=+|+|||+.....+--... .++++|..+=|...+.-+.-.++. . |+.
T Consensus 667 ~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~--~gkkVLLtsyThsAVDNILiKL~~----~-~i~ 739 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA--LGKKVLLTSYTHSAVDNILIKLKG----F-GIY 739 (1100)
T ss_pred HhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH--cCCeEEEEehhhHHHHHHHHHHhc----c-Ccc
Confidence 457999999999998877778889999999999876544433333 389999999998877766655543 2 332
Q ss_pred EEEEcCCC--Ccc------------------hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEeccccc
Q 043190 766 MVEMTGDY--TPD------------------LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 766 v~~~~g~~--~~~------------------~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l 820 (1492)
+.-+..+. .++ ......+.|+.||-=-+...+ ...+.++++|||||-.+
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~pl------f~~R~FD~cIiDEASQI 808 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPL------FVNRQFDYCIIDEASQI 808 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchh------hhccccCEEEEcccccc
Confidence 22221110 000 122346788888743221111 11346899999999865
No 347
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=95.61 E-value=0.052 Score=54.64 Aligned_cols=87 Identities=24% Similarity=0.337 Sum_probs=57.7
Q ss_pred EeecCCCCHHHHHHHHHHHhcCC-ceEEEeccccccccCCCCc---EEEEecceeeeCcc---------------C-ccc
Q 043190 979 GLHHAGLNDKDRSLVEELFANNK-IQVLVCTSTLAWGVNLPAH---LVIIKGTEYYDGKT---------------K-RYV 1038 (1492)
Q Consensus 979 ~~~h~~l~~~~R~~v~~~f~~g~-~~vLvaT~~l~~Gvdip~~---~~VI~~~~~~~~~~---------------~-~~~ 1038 (1492)
.++.-+.+..+...+++.|++.. ..||++|..+++|||+|+. .+||.|-++-.+.. . .+.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 44455566666788999998754 3799999889999999974 45666655432221 0 011
Q ss_pred c--CC--HHHHHHhhcccCCCCCCCceEEEEE
Q 043190 1039 D--FP--ITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 1039 ~--~~--~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
. ++ ...+.|.+||+-|.. ++.|..+++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~-~D~g~i~l~ 135 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGA-NDYGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCc-CceEEEEEE
Confidence 1 12 457899999999965 456765554
No 348
>PRK04296 thymidine kinase; Provisional
Probab=95.57 E-value=0.08 Score=56.74 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=28.2
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
|.-.++.||+|+|||+.+...+.+.... +.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 3457899999999999887776665443 678888866
No 349
>PHA02533 17 large terminase protein; Provisional
Probab=95.53 E-value=0.18 Score=62.54 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=53.7
Q ss_pred CCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
|+|+|.+.+..+. .++-.++..+=..|||.+....++......++..+++++|++.-|..+++.++..+..
T Consensus 60 L~p~Q~~i~~~~~-~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~ 130 (534)
T PHA02533 60 MRDYQKDMLKIMH-KNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIEL 130 (534)
T ss_pred CcHHHHHHHHHHh-cCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 8899999988875 4555578888899999987754443332335679999999999999998888765543
No 350
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.47 E-value=0.025 Score=66.91 Aligned_cols=150 Identities=17% Similarity=0.201 Sum_probs=79.2
Q ss_pred EecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcch-------hccC
Q 043190 709 LGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL-------MALL 781 (1492)
Q Consensus 709 i~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~-------~~~~ 781 (1492)
..+.||||||++..-.|+....+ +-...++.|..-.........+...+....-.+-.+..+|..... ....
T Consensus 2 f~matgsgkt~~ma~lil~~y~k-gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd 80 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKK-GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHND 80 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHh-chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCC
Confidence 35789999999988888887665 346677777776666555444432221110000000111111111 0223
Q ss_pred CCcEEEECchhhhH-hhhcccCc---cccCcccE-EEEecccccCCC-C---------ccHHHHHHHHHHHhhhccCCce
Q 043190 782 SADIIISTPEKWDG-ISRNWHSR---NYVKKVGL-MILDEIHLLGAE-R---------GPILEVIVSRMRYISSQTERAV 846 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~-l~~~~~~~---~~l~~i~l-iViDEaH~l~~~-~---------g~~~~~i~~~l~~~~~~~~~~~ 846 (1492)
...|.++|.+.|-. +.+..... ..+.+.++ .+-||+|+++.. . -..|+..+.. .-...++-
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~l----a~~~nkd~ 156 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKL----ALEQNKDN 156 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHH----HHhcCCCc
Confidence 45899999998743 44432222 23445554 466999998531 1 1123322211 11224455
Q ss_pred EEEEEcCCCCChHHHHH
Q 043190 847 RFIGLSTALANAGDLAD 863 (1492)
Q Consensus 847 ~ii~lSATl~~~~~~~~ 863 (1492)
-++..|||++...++..
T Consensus 157 ~~lef~at~~k~k~v~~ 173 (812)
T COG3421 157 LLLEFSATIPKEKSVED 173 (812)
T ss_pred eeehhhhcCCccccHHH
Confidence 66778999886555544
No 351
>PRK08181 transposase; Validated
Probab=95.46 E-value=0.12 Score=58.24 Aligned_cols=59 Identities=22% Similarity=0.300 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHh---hhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHH
Q 043190 688 HFNPIQTQIFHI---LYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 688 ~l~~~Q~~~i~~---~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q 749 (1492)
.+++.|..++.. ..+.++|+++.||+|+|||..+......... .+.+++|+. ...|..+
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~--~g~~v~f~~-~~~L~~~ 148 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE--NGWRVLFTR-TTDLVQK 148 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH--cCCceeeee-HHHHHHH
Confidence 355666666643 3457789999999999999876543333333 255666654 3445444
No 352
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=95.44 E-value=0.12 Score=64.55 Aligned_cols=135 Identities=17% Similarity=0.207 Sum_probs=80.1
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+.+||||.+..+|+.++..+.+..++.+.. =+...- |=....+..|-
T Consensus 427 ~KTIvFa~n~dHAe~i~~~~~~~ype~~~~--------------------------------~a~~IT-~d~~~~q~~Id 473 (875)
T COG4096 427 GKTIVFAKNHDHAERIREALVNEYPEYNGR--------------------------------YAMKIT-GDAEQAQALID 473 (875)
T ss_pred CceEEEeeCcHHHHHHHHHHHHhCccccCc--------------------------------eEEEEe-ccchhhHHHHH
Confidence 579999999999999999887765431100 012222 22334445555
Q ss_pred HHHhCC-CccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCcc-----ceEEEEeCCcc
Q 043190 162 RLFSEG-LLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRS-----GEGIIITSHDK 235 (1492)
Q Consensus 162 ~~f~~g-~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~-----G~~i~~~~~~~ 235 (1492)
+.+.+. -=+|.++.+.|..|||+|-+..++ |+.. -.+..-|.||+||+-|.-.+-. -.-+.+.+--+
T Consensus 474 ~f~~ke~~P~IaitvdlL~TGiDvpev~nlV-----F~r~--VrSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~ 546 (875)
T COG4096 474 NFIDKEKYPRIAITVDLLTTGVDVPEVVNLV-----FDRK--VRSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVD 546 (875)
T ss_pred HHHhcCCCCceEEehhhhhcCCCchheeeee-----ehhh--hhhHHHHHHHhcCccccCccccCccccceeEEEEEhhh
Confidence 555533 446778889999999998877666 3321 1245569999999999854433 23444444333
Q ss_pred HHHHHHHhcCCCccccchhHhHH
Q 043190 236 LAYYLRLLTSQLPIESQFISSLK 258 (1492)
Q Consensus 236 ~~~~~~~~~~~~~ies~l~~~l~ 258 (1492)
...|.+ ..+++.+......+.
T Consensus 547 ~~~~~~--~~~~~~e~~~~~~l~ 567 (875)
T COG4096 547 NTEYFE--MDPEMREGRVRVSLE 567 (875)
T ss_pred hhhhhc--cCcccccccccchHH
Confidence 333332 344454444444333
No 353
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.39 E-value=0.097 Score=63.61 Aligned_cols=136 Identities=14% Similarity=0.196 Sum_probs=82.7
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHH-HHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC-C
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKA-IVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL-S 782 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~-La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~-~ 782 (1492)
-.++.|..|||||.+..+.++..+... ++.+++++-|+.. |-..++..+...+... |+....-..+......... +
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~~i~~~~~g 81 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSMEIKILNTG 81 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCccEEEecCCC
Confidence 467899999999999888877766664 6789999999876 6667777777666554 5432111111110111112 3
Q ss_pred CcEEEECc-hhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 783 ADIIISTP-EKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 783 ~~Iiv~Tp-e~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
..|++..- +....+. ....+.++.+|||..+.. ..++.+..|++.- .....+.+|.++..
T Consensus 82 ~~i~f~g~~d~~~~ik-------~~~~~~~~~idEa~~~~~---~~~~~l~~rlr~~-----~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 82 KKFIFKGLNDKPNKLK-------SGAGIAIIWFEEASQLTF---EDIKELIPRLRET-----GGKKFIIFSSNPES 142 (396)
T ss_pred eEEEeecccCChhHhh-------CcceeeeehhhhhhhcCH---HHHHHHHHHhhcc-----CCccEEEEEcCcCC
Confidence 44555443 2221111 123468999999998742 3777888776531 12124778888765
No 354
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.27 E-value=0.35 Score=59.62 Aligned_cols=154 Identities=15% Similarity=0.249 Sum_probs=94.0
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHH-HhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLH-LFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~-~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
..++..|+...++.-= +. .+ ..+-.++..|=-.|||.+.. +++. .+...++.+++|++|.+..+...++++..
T Consensus 233 ~~lk~~Fdi~~~s~~~---~~-~f-kqk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~ 306 (738)
T PHA03368 233 RFLRTVFNTPLFSDAA---VR-HF-RQRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGA 306 (738)
T ss_pred HHHHHHcCCccccHHH---HH-Hh-hccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHH
Confidence 4456666766665432 22 33 45677889999999999766 4444 34334689999999999999999999998
Q ss_pred HhhhccCCE-EEEEcCCCCcchhccCC--CcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHH
Q 043190 757 RLVSQLGKE-MVEMTGDYTPDLMALLS--ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVS 833 (1492)
Q Consensus 757 ~~~~~~g~~-v~~~~g~~~~~~~~~~~--~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~ 833 (1492)
.+..+.+.. +....|+ .....-..+ ..|.+++. ++. +...=..++++|||||+.+.+ ..+..++-
T Consensus 307 ~le~~f~~~~v~~vkGe-~I~i~f~nG~kstI~FaSa-------rnt-NsiRGqtfDLLIVDEAqFIk~---~al~~ilp 374 (738)
T PHA03368 307 RLRQWFGASRVDHVKGE-TISFSFPDGSRSTIVFASS-------HNT-NGIRGQDFNLLFVDEANFIRP---DAVQTIMG 374 (738)
T ss_pred HHhhhcchhheeeecCc-EEEEEecCCCccEEEEEec-------cCC-CCccCCcccEEEEechhhCCH---HHHHHHHH
Confidence 877653222 2223342 110011111 24555532 110 101113789999999998843 34555554
Q ss_pred HHHHhhhccCCceEEEEEcCCC
Q 043190 834 RMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 834 ~l~~~~~~~~~~~~ii~lSATl 855 (1492)
.+. ..+.++|.+|.|-
T Consensus 375 ~l~------~~n~k~I~ISS~N 390 (738)
T PHA03368 375 FLN------QTNCKIIFVSSTN 390 (738)
T ss_pred HHh------ccCccEEEEecCC
Confidence 332 3488899999884
No 355
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A ....
Probab=95.25 E-value=0.015 Score=48.87 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=46.0
Q ss_pred ccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhc
Q 043190 489 PLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLG 541 (1492)
Q Consensus 489 ~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~ 541 (1492)
.|.++| +||+..+++|.+.|+ |++++.+.+++++.++-| +++.++++.+.++
T Consensus 6 ~L~~I~-Gig~~~a~~L~~~G~~t~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 59 (60)
T PF14520_consen 6 DLLSIP-GIGPKRAEKLYEAGIKTLEDLANADPEELAEIPGIGEKTAEKIIEAAR 59 (60)
T ss_dssp HHHTST-TCHHHHHHHHHHTTCSSHHHHHTSHHHHHHTSTTSSHHHHHHHHHHHH
T ss_pred hhccCC-CCCHHHHHHHHhcCCCcHHHHHcCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 467899 999999999999999 999999999999999866 6888888887764
No 356
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.22 E-value=0.23 Score=60.17 Aligned_cols=122 Identities=16% Similarity=0.232 Sum_probs=63.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~ 780 (1492)
.++.+++.||||+|||+.....+........+.++.++. |.|.-+.++...|.+.+ |+.+.
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~----~vp~~------------- 282 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIM----GIPVE------------- 282 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHh----CCceE-------------
Confidence 356889999999999987664444332111244554443 34554555555555432 33221
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
.+.+++.+...++. +.+.++|+||.+-....+ ...++.+...+.. .......++.+|||..
T Consensus 283 -----~~~~~~~l~~~l~~------~~~~DlVlIDt~G~~~~d-~~~~~~L~~ll~~---~~~~~~~~LVl~a~~~ 343 (424)
T PRK05703 283 -----VVYDPKELAKALEQ------LRDCDVILIDTAGRSQRD-KRLIEELKALIEF---SGEPIDVYLVLSATTK 343 (424)
T ss_pred -----ccCCHHhHHHHHHH------hCCCCEEEEeCCCCCCCC-HHHHHHHHHHHhc---cCCCCeEEEEEECCCC
Confidence 11244444444443 346799999999654211 1122222222220 1123345677899864
No 357
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.15 E-value=0.044 Score=71.80 Aligned_cols=108 Identities=20% Similarity=0.183 Sum_probs=73.6
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
..|||-|.+++.. .+.+++|.|..|||||.+...-+...+... +..++++++.|+..|.++.+++.+.+ |.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~----~~ 75 (715)
T TIGR01075 3 DGLNDKQREAVAA---PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL----GT 75 (715)
T ss_pred cccCHHHHHHHcC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh----cc
Confidence 4599999999875 356899999999999998877776666432 45789999999999998877776643 21
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhh-hHhhhcccCccccCcccEEEEeccc
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKW-DGISRNWHSRNYVKKVGLMILDEIH 818 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~i~liViDEaH 818 (1492)
. ...+.|+|...+ ..+++.......+. -.+-|+|+.+
T Consensus 76 ~----------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d 113 (715)
T TIGR01075 76 S----------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDD 113 (715)
T ss_pred c----------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHH
Confidence 0 125788999886 34555422111111 1245677765
No 358
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.04 E-value=0.2 Score=54.98 Aligned_cols=106 Identities=21% Similarity=0.305 Sum_probs=58.9
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCc
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSAD 784 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~ 784 (1492)
.+++.||+|+|||-. +.++...+. ..++.+++|+... +........ +..
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~----~~~------------------------ 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADA----LRD------------------------ 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHH----HHT------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHH----HHc------------------------
Confidence 589999999999984 445555443 3456788887653 322222211 110
Q ss_pred EEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 785 IIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 785 Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
...+ .+... +...++++||.+|.+.... ..-+.+...+..+.. .+.++|+.|...|.
T Consensus 86 ---~~~~---~~~~~------~~~~DlL~iDDi~~l~~~~-~~q~~lf~l~n~~~~---~~k~li~ts~~~P~ 142 (219)
T PF00308_consen 86 ---GEIE---EFKDR------LRSADLLIIDDIQFLAGKQ-RTQEELFHLFNRLIE---SGKQLILTSDRPPS 142 (219)
T ss_dssp ---TSHH---HHHHH------HCTSSEEEEETGGGGTTHH-HHHHHHHHHHHHHHH---TTSEEEEEESS-TT
T ss_pred ---ccch---hhhhh------hhcCCEEEEecchhhcCch-HHHHHHHHHHHHHHh---hCCeEEEEeCCCCc
Confidence 0111 22222 4578899999999986432 123444444443332 35678888766654
No 359
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.02 E-value=0.41 Score=53.12 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=30.7
Q ss_pred CCHHHHHHHHhhh------cC-CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE
Q 043190 689 FNPIQTQIFHILY------HT-DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI 740 (1492)
Q Consensus 689 l~~~Q~~~i~~~~------~~-~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i 740 (1492)
.++.|.+++..+. .. ...+++.|++|+|||..+. ++...+.. .+..++|+
T Consensus 77 ~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~-aia~~l~~-~g~~v~~i 133 (244)
T PRK07952 77 ECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAA-AICNELLL-RGKSVLII 133 (244)
T ss_pred CCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHH-HHHHHHHh-cCCeEEEE
Confidence 3455666554432 11 2479999999999998765 34444433 25566665
No 360
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=95.02 E-value=0.023 Score=70.06 Aligned_cols=125 Identities=14% Similarity=0.171 Sum_probs=85.8
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+-++||.+.=.....+..++...-.-. .+-.+.+-..|.-+...+.+.|.
T Consensus 644 gailvflpgwa~i~~L~~~ll~~~~fg------------------------------~~~~y~ilp~Hsq~~~~eqrkvf 693 (1282)
T KOG0921|consen 644 GAVLVFLPGWAEIMTLCNRLLEHQEFG------------------------------QANKYEILPLHSQLTSQEQRKVF 693 (1282)
T ss_pred cceeeecCchHHhhhhhhhhhhhhhhc------------------------------cchhcccccchhhcccHhhhhcc
Confidence 458899888887777777665432110 01122355568889999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceec---CCCC--------CcccCchhhhhhccCCCCCCccceEEEE
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYD---PKAG--------GWRDLGMLDIFGRAGRPQFDRSGEGIII 230 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~---~~~~--------~~~~~~~~~~~GRAGR~~~d~~G~~i~~ 230 (1492)
+....|..++|++|.++...+.+.++..||...+.|- .+.. -.+..+..|+-|||||- +.|.|..+
T Consensus 694 ~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv---R~G~~f~l 770 (1282)
T KOG0921|consen 694 EPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV---RPGFCFHL 770 (1282)
T ss_pred CcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee---cccccccc
Confidence 9999999999999999999999988666665332221 1111 12344567788888885 57999999
Q ss_pred eCCccHHHH
Q 043190 231 TSHDKLAYY 239 (1492)
Q Consensus 231 ~~~~~~~~~ 239 (1492)
|+.-..+.+
T Consensus 771 cs~arF~~l 779 (1282)
T KOG0921|consen 771 CSRARFEAL 779 (1282)
T ss_pred cHHHHHHHH
Confidence 975544433
No 361
>PRK12377 putative replication protein; Provisional
Probab=94.99 E-value=0.19 Score=55.80 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=27.6
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRER 750 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~ 750 (1492)
..++++.||+|+|||..+.. +...+.. .+..++| ++..+|..++
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~-~g~~v~~-i~~~~l~~~l 144 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLA-KGRSVIV-VTVPDVMSRL 144 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH-cCCCeEE-EEHHHHHHHH
Confidence 46899999999999987654 4444333 2444544 4445555543
No 362
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.90 E-value=0.1 Score=66.96 Aligned_cols=113 Identities=22% Similarity=0.252 Sum_probs=80.1
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEE--EEcCCCChhhHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVG--VHHAGMLRSDRG 158 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~--~hhagl~~~~R~ 158 (1492)
++.+||||.-+....-+-+.|.+... ..|. -.-|..++.+|.
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~m------------------------------------psVtymRLDGSVpp~~R~ 1383 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYM------------------------------------PSVTYMRLDGSVPPGDRQ 1383 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhc------------------------------------CceeEEEecCCCCcHHHH
Confidence 46799999988877766666654311 1144 346999999999
Q ss_pred HHHHHHhCC-CccEE-EeccccccccCC-CcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 159 LTERLFSEG-LLKVL-VCTATLAWGVNL-PAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 159 ~ve~~f~~g-~i~vl-vaT~tla~Gvnl-p~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.+.+.|-++ .|.|| .+|-+-+.|+|| .|.+||+ ++ ..|.++.-+|-+-||-|-|.-+.=.++.+.+...
T Consensus 1384 kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVF-----vE---HDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1384 KIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVF-----VE---HDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred HHHHHhcCCCceeEEEEeeeccccccccCCCceEEE-----Ee---cCCCchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 999999999 89987 566799999999 6777776 32 3344444577667777777555566776666555
Q ss_pred HH
Q 043190 236 LA 237 (1492)
Q Consensus 236 ~~ 237 (1492)
++
T Consensus 1456 LE 1457 (1549)
T KOG0392|consen 1456 LE 1457 (1549)
T ss_pred HH
Confidence 43
No 363
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.87 E-value=0.055 Score=62.31 Aligned_cols=59 Identities=20% Similarity=0.267 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcccHHH
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAPLKAI 746 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P~r~L 746 (1492)
..+++.|.+.+..+...+.|++|+|+||||||+.. -+++..+.. .++.+++.+-.+.+|
T Consensus 127 g~~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 127 KIMTEAQASVIRSAIDSRLNIVISGGTGSGKTTLA-NAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCCCCceEEEecCCccc
Confidence 34778899888888878889999999999999865 456665532 245688888877775
No 364
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=94.81 E-value=0.053 Score=70.04 Aligned_cols=90 Identities=23% Similarity=0.245 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
.||+-|.+++.. .+..++|.|..|||||.+...-+...+... +..++++++.|+..|.++.+++...+ |..
T Consensus 2 ~Ln~~Q~~av~~---~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l----~~~ 74 (672)
T PRK10919 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL----GRK 74 (672)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh----Ccc
Confidence 489999999876 346788999999999999887777766432 35689999999999998777776543 210
Q ss_pred EEEEcCCCCcchhccCCCcEEEECchhh-hHhhhc
Q 043190 766 MVEMTGDYTPDLMALLSADIIISTPEKW-DGISRN 799 (1492)
Q Consensus 766 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~ 799 (1492)
....+.|+|...| ..+++.
T Consensus 75 ---------------~~~~v~i~TfHS~~~~iLr~ 94 (672)
T PRK10919 75 ---------------EARGLMISTFHTLGLDIIKR 94 (672)
T ss_pred ---------------cccCcEEEcHHHHHHHHHHH
Confidence 0125789999886 344544
No 365
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.70 E-value=0.12 Score=57.87 Aligned_cols=116 Identities=19% Similarity=0.177 Sum_probs=67.2
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCC-----CceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQS-----DMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~-----~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~ 779 (1492)
.++++.|+||.|||.+..-..-.+-.... -+-+++-+|...-....|..+-..+ |.... ..+
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l----gaP~~--~~~------- 128 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL----GAPYR--PRD------- 128 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh----CcccC--CCC-------
Confidence 58999999999999976544333221111 1234555676665555555544444 22110 000
Q ss_pred cCCCcEEEECchh----hhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEE
Q 043190 780 LLSADIIISTPEK----WDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGL 851 (1492)
Q Consensus 780 ~~~~~Iiv~Tpe~----l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~l 851 (1492)
+..+ ...+++. -.++++||||+|.+..+....-..++..+|.+...+ ...+|+.
T Consensus 129 ---------~~~~~~~~~~~llr~-------~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL--~ipiV~v 186 (302)
T PF05621_consen 129 ---------RVAKLEQQVLRLLRR-------LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNEL--QIPIVGV 186 (302)
T ss_pred ---------CHHHHHHHHHHHHHH-------cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhcc--CCCeEEe
Confidence 1111 1234443 367899999999876666666777888888887655 4445544
No 366
>PRK11054 helD DNA helicase IV; Provisional
Probab=94.63 E-value=0.075 Score=68.12 Aligned_cols=88 Identities=24% Similarity=0.245 Sum_probs=64.7
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
..||+-|.+++.. ...+++|.|..|||||.+..--+...+... .+.++++++.++..|.++.+++...+ |
T Consensus 195 ~~L~~~Q~~av~~---~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l----g- 266 (684)
T PRK11054 195 SPLNPSQARAVVN---GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL----G- 266 (684)
T ss_pred CCCCHHHHHHHhC---CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc----C-
Confidence 3699999998874 345788999999999998776555444332 35699999999999998887776543 2
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhh-Hhhhc
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWD-GISRN 799 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~-~l~~~ 799 (1492)
..+|-|+|-..|. .+++.
T Consensus 267 -----------------~~~v~v~TFHSlal~Il~~ 285 (684)
T PRK11054 267 -----------------TEDITARTFHALALHIIQQ 285 (684)
T ss_pred -----------------CCCcEEEeHHHHHHHHHHH
Confidence 0257889988873 44554
No 367
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.58 E-value=0.12 Score=58.05 Aligned_cols=66 Identities=18% Similarity=0.201 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHh------hhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHI------LYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~------~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~ 753 (1492)
.|......+..++.. .++.+.++++.||+|+|||..+.....+.+ . .+.-++.+++.+|+.++...
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~--~g~sv~f~~~~el~~~Lk~~ 151 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELL-K--AGISVLFITAPDLLSKLKAA 151 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHH-H--cCCeEEEEEHHHHHHHHHHH
Confidence 344344455554443 235678999999999999998765544444 3 35556667777777765443
No 368
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=94.58 E-value=0.14 Score=64.88 Aligned_cols=65 Identities=28% Similarity=0.390 Sum_probs=48.3
Q ss_pred CCcEEEEEec---hHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhH
Q 043190 81 GHQAMVFVHS---RKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDR 157 (1492)
Q Consensus 81 ~~~~lVF~~s---r~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R 157 (1492)
|.-.||||+. +..++.+++.|.++.. .+...|++ +
T Consensus 335 G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi-------------------------------------~a~~~~a~-----~ 372 (1187)
T COG1110 335 GDGGLIFVPIDYGREKAEELAEYLRSHGI-------------------------------------NAELIHAE-----K 372 (1187)
T ss_pred CCCeEEEEEcHHhHHHHHHHHHHHHhcCc-------------------------------------eEEEeecc-----c
Confidence 4457999999 6667777776654321 25556663 3
Q ss_pred HHHHHHHhCCCccEEEec----cccccccCCCcE
Q 043190 158 GLTERLFSEGLLKVLVCT----ATLAWGVNLPAH 187 (1492)
Q Consensus 158 ~~ve~~f~~g~i~vlvaT----~tla~Gvnlp~~ 187 (1492)
+...+.|..|+++|||.. .+|-||+|||.+
T Consensus 373 ~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~r 406 (1187)
T COG1110 373 EEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHR 406 (1187)
T ss_pred hhhhhhhccCceeEEEEecccccceeecCCchhh
Confidence 677889999999999875 579999999963
No 369
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.52 E-value=0.0098 Score=61.64 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=42.9
Q ss_pred EEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEE
Q 043190 708 LLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIII 787 (1492)
Q Consensus 708 li~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv 787 (1492)
++.|+=|-|||.+.-+++...+.. ...++++.+|+.+-+...++.....+... |.+............-...+..|-+
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-~~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~i~f 78 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-GKIRILVTAPSPENVQTLFEFAEKGLKAL-GYKEEKKKRIGQIIKLRFNKQRIEF 78 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------EEEE-SS--S-HHHHHCC---------------------------CCC--B
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-cCceEEEecCCHHHHHHHHHHHHhhcccc-ccccccccccccccccccccceEEE
Confidence 578999999999877666555443 23689999999998877666554433222 2222000000000001112456777
Q ss_pred ECchhhhHhhhcccCccccCcccEEEEeccccc
Q 043190 788 STPEKWDGISRNWHSRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 788 ~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l 820 (1492)
..|+.+. .. -...+++|||||=.+
T Consensus 79 ~~Pd~l~---~~------~~~~DlliVDEAAaI 102 (177)
T PF05127_consen 79 VAPDELL---AE------KPQADLLIVDEAAAI 102 (177)
T ss_dssp --HHHHC---CT----------SCEEECTGGGS
T ss_pred ECCHHHH---hC------cCCCCEEEEechhcC
Confidence 7776432 11 123489999999876
No 370
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.50 E-value=0.27 Score=59.68 Aligned_cols=90 Identities=19% Similarity=0.257 Sum_probs=49.6
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~ 780 (1492)
.++.+.++||||+|||+.+...+......+.+.++.++. +.+..+.++... ++..+|+.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~----ya~iLgv~v~~------------ 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHS----YGRQLGIAVHE------------ 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHH----hhcccCceeEe------------
Confidence 578999999999999987654444333332234454443 345444333332 22222332221
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEeccccc
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l 820 (1492)
..+++.+...+++ +.+.++|+||.+-..
T Consensus 413 ------a~d~~~L~~aL~~------l~~~DLVLIDTaG~s 440 (559)
T PRK12727 413 ------ADSAESLLDLLER------LRDYKLVLIDTAGMG 440 (559)
T ss_pred ------cCcHHHHHHHHHH------hccCCEEEecCCCcc
Confidence 1133445455543 346789999999754
No 371
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=94.46 E-value=0.072 Score=61.65 Aligned_cols=59 Identities=22% Similarity=0.234 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcccHHH
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAPLKAI 746 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P~r~L 746 (1492)
..+++.|.+.+..+...+.+++++|+||||||+.. .+++..+. ..+..+++.+-.+.++
T Consensus 131 g~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 131 GIMTAAQREAIIAAVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhcCCCceEEEEcCCCcc
Confidence 34678899988887778899999999999999654 45554432 2245688888888775
No 372
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.44 E-value=0.2 Score=62.87 Aligned_cols=165 Identities=10% Similarity=0.111 Sum_probs=97.6
Q ss_pred CCCHHHHHHHHhhhcCC-CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHH-HHHHHhhhccCCE
Q 043190 688 HFNPIQTQIFHILYHTD-NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMN-DWKDRLVSQLGKE 765 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~-~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~-~~~~~~~~~~g~~ 765 (1492)
..+|+|.+....+-..+ +.++++.++-+|||.+.+..+...+.. ....++++.||..+|....+ ++...+.....++
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~-~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~ 94 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQ-DPGPMLYVQPTDDAAKDFSKERLDPMIRASPVLR 94 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEe-CCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHH
Confidence 57899999999875322 589999999999999766555544444 46889999999999987653 3333332211111
Q ss_pred --EEE---EcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC---CCCccHHHHHHHHHHH
Q 043190 766 --MVE---MTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG---AERGPILEVIVSRMRY 837 (1492)
Q Consensus 766 --v~~---~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~---~~~g~~~~~i~~~l~~ 837 (1492)
+.. -.++.+...+...+..+.++....-..+ .-..++++++||++.+. ...|..++.+..|.+.
T Consensus 95 ~~~~~~~~~~~~~t~~~k~f~gg~l~~~ga~S~~~l--------~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~t 166 (557)
T PF05876_consen 95 RKLSPSKSRDSGNTILYKRFPGGFLYLVGANSPSNL--------RSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKT 166 (557)
T ss_pred HHhCchhhcccCCchhheecCCCEEEEEeCCCCccc--------ccCCcCEEEEechhhccccCccCCCHHHHHHHHHhh
Confidence 000 0111122222333455665543322111 12367899999999884 3578888888888875
Q ss_pred hhhccCCceEEEEEc-CCCCChHHHHHHh
Q 043190 838 ISSQTERAVRFIGLS-TALANAGDLADWL 865 (1492)
Q Consensus 838 ~~~~~~~~~~ii~lS-ATl~~~~~~~~~l 865 (1492)
. ....+++..| .|......+...+
T Consensus 167 f----~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 167 F----GSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred h----ccCcEEEEeCCCCCCCCCHHHHHH
Confidence 4 1234444444 4444333444433
No 373
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.43 E-value=0.098 Score=52.26 Aligned_cols=17 Identities=47% Similarity=0.729 Sum_probs=14.3
Q ss_pred EEEecCCCCCchHHHHH
Q 043190 707 VLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 707 vli~apTGsGKT~~~~l 723 (1492)
+++.||.|+|||..+..
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 58999999999987643
No 374
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.43 E-value=0.099 Score=60.18 Aligned_cols=59 Identities=25% Similarity=0.289 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcccHHHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P~r~La 747 (1492)
.+++-|.+.+..++..+.+++++||||||||+.. -+++..+.. .+..+++.+-...++.
T Consensus 116 ~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 116 IMTAAQRDVLREAVLARKNILVVGGTGSGKTTLA-NALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHH-HHHHHHhhccCCCceEEEECCchhhc
Confidence 4677788888877777889999999999999875 455666543 2367889988888763
No 375
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.37 E-value=0.034 Score=56.19 Aligned_cols=42 Identities=26% Similarity=0.339 Sum_probs=28.4
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La 747 (1492)
+..+++.||+|+|||+.+...+.. +.. ....++++.+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~-~~~-~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARE-LGP-PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhc-cCC-CCCCEEEECCEEccc
Confidence 568999999999999986544333 222 123678888776543
No 376
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.33 E-value=0.15 Score=58.51 Aligned_cols=27 Identities=30% Similarity=0.472 Sum_probs=19.9
Q ss_pred HHhhhcCC--CcEEEecCCCCCchHHHHH
Q 043190 697 FHILYHTD--NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 697 i~~~~~~~--~~vli~apTGsGKT~~~~l 723 (1492)
+..+++++ .++|+-||+|+|||+.+.+
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARL 67 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHH
Confidence 34444333 4899999999999998754
No 377
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.30 E-value=0.37 Score=56.04 Aligned_cols=129 Identities=18% Similarity=0.281 Sum_probs=66.0
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE-c-ccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI-A-PLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i-~-P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~ 780 (1492)
.++.++++||||+|||+.+.-........ +.++.++ + |.|.-|.++.+.+.+ ..|+.+.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~--g~~V~lItaDtyR~gAveQLk~yae----~lgvpv~------------- 265 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQ--NRTVGFITTDTFRSGAVEQFQGYAD----KLDVELI------------- 265 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCccCccHHHHHHHHhh----cCCCCEE-------------
Confidence 46788999999999998765544443332 4444433 3 445544443333332 2233221
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHH
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGD 860 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~ 860 (1492)
...+|+.+...+.... ..++.++|+||=+-... .-...+..+..+.....+..-++.+||+. ...+
T Consensus 266 -----~~~dp~dL~~al~~l~---~~~~~D~VLIDTAGr~~-----~d~~~l~EL~~l~~~~~p~~~~LVLsag~-~~~d 331 (407)
T PRK12726 266 -----VATSPAELEEAVQYMT---YVNCVDHILIDTVGRNY-----LAEESVSEISAYTDVVHPDLTCFTFSSGM-KSAD 331 (407)
T ss_pred -----ecCCHHHHHHHHHHHH---hcCCCCEEEEECCCCCc-----cCHHHHHHHHHHhhccCCceEEEECCCcc-cHHH
Confidence 1235655544333211 12457899999885432 22233344443333333344456678875 3444
Q ss_pred HHHH
Q 043190 861 LADW 864 (1492)
Q Consensus 861 ~~~~ 864 (1492)
+.+.
T Consensus 332 ~~~i 335 (407)
T PRK12726 332 VMTI 335 (407)
T ss_pred HHHH
Confidence 4443
No 378
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.29 E-value=0.24 Score=55.23 Aligned_cols=50 Identities=20% Similarity=0.209 Sum_probs=37.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWK 755 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~ 755 (1492)
.+..++|.||+|+|||+.+...+...+.. +.+++|++-. +-..++.+++.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~e-e~~~~i~~~~~ 69 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALE-EHPVQVRRNMA 69 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEee-CCHHHHHHHHH
Confidence 57899999999999999988888877643 7888888743 34455555443
No 379
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.26 E-value=0.18 Score=55.96 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=17.4
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.++.++++||+|+|||..+..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~a 61 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQA 61 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999987653
No 380
>PRK08727 hypothetical protein; Validated
Probab=94.25 E-value=0.22 Score=55.33 Aligned_cols=35 Identities=23% Similarity=0.302 Sum_probs=23.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA 741 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~ 741 (1492)
+.+++.||+|+|||..+... ...+.. .+.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~-~~~~~~-~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALAL-CAAAEQ-AGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHH-HHHHHH-cCCcEEEEe
Confidence 46999999999999765533 333322 255677764
No 381
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.22 E-value=0.65 Score=58.69 Aligned_cols=143 Identities=17% Similarity=0.173 Sum_probs=84.1
Q ss_pred CCHHHHH---HHHhhhcCCC-cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 689 FNPIQTQ---IFHILYHTDN-NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 689 l~~~Q~~---~i~~~~~~~~-~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.+.-|.+ .+..+++.+. -+++.|.=|=|||.+.-+++...........+++.+|+.+-+...++-..+.+... |.
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~l-g~ 290 (758)
T COG1444 212 LTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFL-GY 290 (758)
T ss_pred cChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHh-CC
Confidence 4455555 4555664444 78899999999999888777433332224699999999998888777666555444 54
Q ss_pred EEEEEcCC-CCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccC
Q 043190 765 EMVEMTGD-YTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 765 ~v~~~~g~-~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
+-...... ............|=+-+|.... ..-+++|||||=.+. -+.++.++.
T Consensus 291 ~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~------------~~~DllvVDEAAaIp---lplL~~l~~---------- 345 (758)
T COG1444 291 KRKVAPDALGEIREVSGDGFRIEYVPPDDAQ------------EEADLLVVDEAAAIP---LPLLHKLLR---------- 345 (758)
T ss_pred ccccccccccceeeecCCceeEEeeCcchhc------------ccCCEEEEehhhcCC---hHHHHHHHh----------
Confidence 32211111 0000011112235566665211 115799999998663 223333333
Q ss_pred CceEEEEEcCCCCCh
Q 043190 844 RAVRFIGLSTALANA 858 (1492)
Q Consensus 844 ~~~~ii~lSATl~~~ 858 (1492)
..+.++||.|+..+
T Consensus 346 -~~~rv~~sTTIhGY 359 (758)
T COG1444 346 -RFPRVLFSTTIHGY 359 (758)
T ss_pred -hcCceEEEeeeccc
Confidence 33458999999664
No 382
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=94.20 E-value=0.22 Score=60.06 Aligned_cols=87 Identities=24% Similarity=0.210 Sum_probs=69.5
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCc-eEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccC
Q 043190 975 QFGIGLHHAGLNDKDRSLVEELFANNKI-QVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAG 1053 (1492)
Q Consensus 975 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~-~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRag 1053 (1492)
++.-.-+.|+....+|+.+...|....+ -.|++|.+.+-|||+.+.+.||- ||. |..+.-=.|...||.
T Consensus 1068 ~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViF----YdS------DWNPT~D~QAMDRAH 1137 (1185)
T KOG0388|consen 1068 GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIF----YDS------DWNPTADQQAMDRAH 1137 (1185)
T ss_pred ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEEE----ecC------CCCcchhhHHHHHHH
Confidence 5666778899999999999999998655 46789999999999999888884 663 333444468889999
Q ss_pred CCCCCCceEEEEEecCCc
Q 043190 1054 RPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1054 R~g~~~~G~~i~l~~~~~ 1071 (1492)
|.|..+.-++|.+.....
T Consensus 1138 RLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1138 RLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred hccCccceeeeeeccccc
Confidence 998888888888877654
No 383
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=94.18 E-value=0.064 Score=50.79 Aligned_cols=66 Identities=23% Similarity=0.094 Sum_probs=42.3
Q ss_pred HHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCC
Q 043190 1152 NTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRH 1222 (1492)
Q Consensus 1152 ~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~ 1222 (1492)
++++.|...|+|+.++ .+|++|+.++.+|++|+-+++++.+....+ ...++.++|..++ .++..+.
T Consensus 1 ~A~~~L~~Lgald~~~---~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~-~~~~~~iaa~ls~-~~~f~~~ 66 (102)
T PF04408_consen 1 KALELLKSLGALDENG---NLTPLGRKMSQLPLDPRLAKMLLYGIQFGC-LDEALIIAAILSV-RSPFINP 66 (102)
T ss_dssp -HHHHHHHTTSB-TTS----B-HHHHHHTTSSS-HHHHHHHHHHHHCT--HHHHHHHHHHHTS-S--B---
T ss_pred CHHHHHHHCCCCCCCC---CcCHHHHHHHHCCCchHhHhHhhhcccccc-HHHHHHHHHHHcC-CCcccCc
Confidence 3788999999995443 679999999999999999999987765554 4555555554444 5555554
No 384
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.17 E-value=0.35 Score=59.12 Aligned_cols=45 Identities=27% Similarity=0.387 Sum_probs=30.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcccHHHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P~r~La~q~~ 751 (1492)
+.+++.|++|+|||... .++...+.. .++.+++|+.+ ..+..+..
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~ 187 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNFSDLKVSYMSG-DEFARKAV 187 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH-HHHHHHHH
Confidence 46899999999999765 455555443 34677887766 44444433
No 385
>PRK06893 DNA replication initiation factor; Validated
Probab=94.04 E-value=0.4 Score=53.18 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=22.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA 741 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~ 741 (1492)
..+++.||+|+|||..+....-..... +.+++|+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~--~~~~~y~~ 74 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN--QRTAIYIP 74 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEee
Confidence 457999999999998654333332222 44555544
No 386
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.02 E-value=0.21 Score=51.90 Aligned_cols=39 Identities=38% Similarity=0.430 Sum_probs=28.0
Q ss_pred EEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHH
Q 043190 707 VLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 707 vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La 747 (1492)
++|.||+|+|||..+...+..... .+..++|+.......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCcchH
Confidence 689999999999977655554433 367888887765543
No 387
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.95 E-value=1.3 Score=54.97 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=86.8
Q ss_pred CCHHHHHHHHhhhc--CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc-----
Q 043190 689 FNPIQTQIFHILYH--TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ----- 761 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~--~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~----- 761 (1492)
++|.=.+-++.+++ ..+-.++.+|=|.|||.+..+.+...+.. .+.+|+|.+|...-+.++++++...+...
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~ 248 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISF-LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPW 248 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHh-cCCeEEEECCChhhHHHHHHHHHHHHHHhccccc
Confidence 44444444444321 44667888999999999877665544432 36899999999999999999988877632
Q ss_pred cC--CEEEEEcCCCCc------chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHH
Q 043190 762 LG--KEMVEMTGDYTP------DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVS 833 (1492)
Q Consensus 762 ~g--~~v~~~~g~~~~------~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~ 833 (1492)
.+ ..+....|+... .........|.+++-. .....-..++++|+|||+.+.. ..++.++-
T Consensus 249 fp~~~~iv~vkgg~E~I~f~~p~gak~G~sti~F~Ars---------~~s~RG~~~DLLIVDEAAfI~~---~~l~aIlP 316 (752)
T PHA03333 249 FPEEFKIVTLKGTDENLEYISDPAAKEGKTTAHFLASS---------PNAARGQNPDLVIVDEAAFVNP---GALLSVLP 316 (752)
T ss_pred cCCCceEEEeeCCeeEEEEecCcccccCcceeEEeccc---------CCCcCCCCCCEEEEECcccCCH---HHHHHHHH
Confidence 11 112222222110 0000011233333221 0111112568999999998854 34444443
Q ss_pred HHHHhhhccCCceEEEEEcCCCCChHHHHHHh
Q 043190 834 RMRYISSQTERAVRFIGLSTALANAGDLADWL 865 (1492)
Q Consensus 834 ~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l 865 (1492)
-+. ..+.+++.+|.+- ..+....++
T Consensus 317 ~l~------~~~~k~IiISS~~-~~~s~tS~L 341 (752)
T PHA03333 317 LMA------VKGTKQIHISSPV-DADSWISRV 341 (752)
T ss_pred HHc------cCCCceEEEeCCC-CcchHHHHh
Confidence 332 2366777887774 234444444
No 388
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.90 E-value=0.27 Score=54.57 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=19.6
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLH 727 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~ 727 (1492)
.+.++++.||+|+|||..+....-+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~ 61 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAA 61 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999987554433
No 389
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=93.86 E-value=0.15 Score=66.67 Aligned_cols=89 Identities=22% Similarity=0.219 Sum_probs=66.2
Q ss_pred CCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
|||-|.+++.. .+.+++|.|..|||||.+...-+...+... +..++++++.|+..|.++-+++.+.+ |..
T Consensus 2 Ln~~Q~~av~~---~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l----~~~- 73 (664)
T TIGR01074 2 LNPQQQEAVEY---VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL----GKG- 73 (664)
T ss_pred CCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh----Ccc-
Confidence 78999998875 356899999999999999888777777532 45789999999999998877776544 210
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhhh-Hhhhc
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKWD-GISRN 799 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~-~l~~~ 799 (1492)
...++.|+|-.+|. .+++.
T Consensus 74 --------------~~~~v~v~TfHs~a~~il~~ 93 (664)
T TIGR01074 74 --------------EARGLTISTFHTLGLDIIKR 93 (664)
T ss_pred --------------ccCCeEEEeHHHHHHHHHHH
Confidence 12357899998873 34443
No 390
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.83 E-value=0.47 Score=57.29 Aligned_cols=121 Identities=16% Similarity=0.244 Sum_probs=61.6
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
...++++|++|+|||+.+...+.. +.. .+.+++++. +.|.-+.++...+...+ |+.+......
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~-L~~-~g~kV~lV~~D~~R~aa~eQL~~la~~~----gvp~~~~~~~--------- 159 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARY-FKK-KGLKVGLVAADTYRPAAYDQLKQLAEKI----GVPFYGDPDN--------- 159 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH-HHH-cCCeEEEecCCCCCHHHHHHHHHHHHHc----CCcEEecCCc---------
Confidence 457889999999999877654433 333 244555443 33554555555544432 4332211000
Q ss_pred CCcEEEECchh-hhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 782 SADIIISTPEK-WDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 782 ~~~Iiv~Tpe~-l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
..|.. +...++. ....++||||.+-... .-+.++..++.+.....+..-++.++||..
T Consensus 160 ------~d~~~i~~~al~~------~~~~DvVIIDTAGr~~-----~d~~lm~El~~l~~~~~pdevlLVvda~~g 218 (437)
T PRK00771 160 ------KDAVEIAKEGLEK------FKKADVIIVDTAGRHA-----LEEDLIEEMKEIKEAVKPDEVLLVIDATIG 218 (437)
T ss_pred ------cCHHHHHHHHHHH------hhcCCEEEEECCCccc-----chHHHHHHHHHHHHHhcccceeEEEecccc
Confidence 01111 1222222 2234899999995432 222344444444333344566777788764
No 391
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.76 E-value=0.16 Score=57.44 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=47.5
Q ss_pred hhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHH
Q 043190 682 ALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La 747 (1492)
.+..|..+++-|...+..+.....|++++|.||||||+.. -+++..+. +..+++.+--+.+|.
T Consensus 151 dli~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlL-Nal~~~i~--~~eRvItiEDtaELq 213 (355)
T COG4962 151 DLIIFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLL-NALSGFID--SDERVITIEDTAELQ 213 (355)
T ss_pred HHHHcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHH-HHHHhcCC--CcccEEEEeehhhhc
Confidence 4447889999999999988866679999999999999842 22222222 245999998887764
No 392
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.72 E-value=0.36 Score=66.35 Aligned_cols=63 Identities=17% Similarity=0.269 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHhhhc-CCCcEEEecCCCCCchHHHH--HHHHHHhccCCCceEEEEcccHHHHHHH
Q 043190 688 HFNPIQTQIFHILYH-TDNNVLLGAPTGSGKTISAE--LAMLHLFNTQSDMKVVYIAPLKAIVRER 750 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~-~~~~vli~apTGsGKT~~~~--l~il~~l~~~~~~~~l~i~P~r~La~q~ 750 (1492)
.|++-|.+++..++. .++.++|.|..|+|||+..- +.++..+....+..++.++||-.-+.++
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 589999999998874 35789999999999998742 2333333333467899999998766543
No 393
>PRK08116 hypothetical protein; Validated
Probab=93.70 E-value=1.6 Score=49.52 Aligned_cols=40 Identities=20% Similarity=0.414 Sum_probs=26.6
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~ 748 (1492)
.+++.|++|+|||..+. ++.+.+... +..++|+. ...+..
T Consensus 116 gl~l~G~~GtGKThLa~-aia~~l~~~-~~~v~~~~-~~~ll~ 155 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAA-CIANELIEK-GVPVIFVN-FPQLLN 155 (268)
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHHHc-CCeEEEEE-HHHHHH
Confidence 49999999999998765 455555443 45555554 444443
No 394
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=93.64 E-value=0.29 Score=52.45 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=15.3
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
.++++.||+|+|||+.+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 479999999999999764
No 395
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.64 E-value=0.49 Score=60.41 Aligned_cols=120 Identities=13% Similarity=0.173 Sum_probs=63.0
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc--cHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP--LKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P--~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
++.+.+.||||+|||+.............++.++.++.- .|.=+.++.+.+.+.+ |+.+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~----gvpv~-------------- 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRIL----GVPVH-------------- 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhC----CCCcc--------------
Confidence 457889999999998876544433322222235544432 3433444444444332 43221
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
.+.+|+.+...++. +.+.++|+||=+=+...+ ..+...+..+.....+.-.++.+|||..
T Consensus 247 ----~~~~~~~l~~al~~------~~~~D~VLIDTAGRs~~d-----~~l~eel~~l~~~~~p~e~~LVLsAt~~ 306 (767)
T PRK14723 247 ----AVKDAADLRFALAA------LGDKHLVLIDTVGMSQRD-----RNVSEQIAMLCGVGRPVRRLLLLNAASH 306 (767)
T ss_pred ----ccCCHHHHHHHHHH------hcCCCEEEEeCCCCCccC-----HHHHHHHHHHhccCCCCeEEEEECCCCc
Confidence 12256655444443 345678999988644221 2233333333333344556778888863
No 396
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.64 E-value=0.34 Score=55.00 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.6
Q ss_pred CCcEEEecCCCCCchHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~ 724 (1492)
..++++.||+|+|||..+-..
T Consensus 42 ~~~vll~GppGtGKTtlA~~i 62 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARIL 62 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHH
Confidence 358999999999999987544
No 397
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.62 E-value=0.32 Score=60.07 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=27.7
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q 749 (1492)
+.+++.||+|+|||..+....-......++.+++|+.. ..+..+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~-~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS-EKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHH
Confidence 46999999999999876443333333333567777744 344443
No 398
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.51 E-value=0.14 Score=67.16 Aligned_cols=108 Identities=19% Similarity=0.169 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc--CCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT--QSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~--~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
..|||-|.+++.. ...+++|.|..|||||.+...-+...+.. -+..++++++-|+..|.++-+++.+.+ |.
T Consensus 8 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~----~~ 80 (721)
T PRK11773 8 DSLNDKQREAVAA---PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL----GT 80 (721)
T ss_pred HhcCHHHHHHHhC---CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh----cc
Confidence 3599999999875 34688999999999999887766666542 245789999999999998877776643 21
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhh-hHhhhcccCccccCcccEEEEeccc
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKW-DGISRNWHSRNYVKKVGLMILDEIH 818 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~i~liViDEaH 818 (1492)
. ...+.|+|...| ..+++.......+ .-++-|+|+.+
T Consensus 81 ~----------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d 118 (721)
T PRK11773 81 S----------------QGGMWVGTFHGLAHRLLRAHWQDANL-PQDFQILDSDD 118 (721)
T ss_pred C----------------CCCCEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHH
Confidence 0 124678999886 3345542111111 11245677765
No 399
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.43 E-value=0.26 Score=56.34 Aligned_cols=87 Identities=18% Similarity=0.278 Sum_probs=47.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE--cccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI--APLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i--~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~ 780 (1492)
.++.++++||||+|||+.....+......+++.++.++ =|.|.-+.++...|.+.+ |+.+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~----~~p~~~------------ 256 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKIL----GVPVKV------------ 256 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHh----CCceec------------
Confidence 35688999999999998765444333222112344333 233544555555554432 332211
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEecc
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEI 817 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEa 817 (1492)
+.+++.+...+.. +.+.++|+||.+
T Consensus 257 ------~~~~~~l~~~l~~------~~~~d~vliDt~ 281 (282)
T TIGR03499 257 ------ARDPKELRKALDR------LRDKDLILIDTA 281 (282)
T ss_pred ------cCCHHHHHHHHHH------ccCCCEEEEeCC
Confidence 1244445444443 345789999975
No 400
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=93.39 E-value=0.78 Score=51.46 Aligned_cols=142 Identities=17% Similarity=0.223 Sum_probs=73.2
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE-EEcCCCCcc-----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV-EMTGDYTPD----- 776 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~-~~~g~~~~~----- 776 (1492)
.|+-++|+|++|+|||..+...+.+.... .+.+++|+..--. ..++..++.... .|.... ...+.....
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~~-~~~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~~ 86 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEMS-KEQLLQRLLASE---SGISLSKLRTGSLSDEDWERL 86 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCCC-HHHHHHHHHHHh---cCCCHHHHhcCCCCHHHHHHH
Confidence 67889999999999999877766666543 2678888874321 112222221111 121111 111111110
Q ss_pred ---hhccCCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCCC-----CccHHHHHHHHHHHhhhccC
Q 043190 777 ---LMALLSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-----RGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 777 ---~~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~-----~g~~~~~i~~~l~~~~~~~~ 843 (1492)
........+.+. |++.+...++.... -.++++||||=++.+... +...+..++..++.+....
T Consensus 87 ~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~---~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~L~~la~~~- 162 (242)
T cd00984 87 AEAIGELKELPIYIDDSSSLTVSDIRSRARRLKK---EHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKEL- 162 (242)
T ss_pred HHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH---hcCCCEEEEcCchhcCCCCCCCCHHHHHHHHHHHHHHHHHHh-
Confidence 001112234442 33434333333211 127899999999976322 2234556677777665533
Q ss_pred CceEEEEEcCC
Q 043190 844 RAVRFIGLSTA 854 (1492)
Q Consensus 844 ~~~~ii~lSAT 854 (1492)
+..++++|-.
T Consensus 163 -~~~ii~~~q~ 172 (242)
T cd00984 163 -NVPVIALSQL 172 (242)
T ss_pred -CCeEEEeccc
Confidence 6666776643
No 401
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=93.36 E-value=0.31 Score=63.31 Aligned_cols=157 Identities=17% Similarity=0.122 Sum_probs=94.0
Q ss_pred hcCCCcEEEecCCCCCchHHHHHHHHHHhccC----------------CCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 701 YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ----------------SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 701 ~~~~~~vli~apTGsGKT~~~~l~il~~l~~~----------------~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
+..|+.++.+-.-|.|||.+-+...+...... ..+-+|||+|. ++..|.+.++...... ++
T Consensus 371 ~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~--~l 447 (1394)
T KOG0298|consen 371 KKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISS--LL 447 (1394)
T ss_pred ccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccc--cc
Confidence 34567888889999999987765554432111 24678999997 5667777777654332 46
Q ss_pred EEEEEcCCCC---cchhccCCCcEEEECchhhhHhhhcc---cCc-------------cccCcc--cEEEEecccccCCC
Q 043190 765 EMVEMTGDYT---PDLMALLSADIIISTPEKWDGISRNW---HSR-------------NYVKKV--GLMILDEIHLLGAE 823 (1492)
Q Consensus 765 ~v~~~~g~~~---~~~~~~~~~~Iiv~Tpe~l~~l~~~~---~~~-------------~~l~~i--~liViDEaH~l~~~ 823 (1492)
+|..+.|-.. .....+.++|||+||+..|..=+... ..+ ..|-.+ =-|++|||+++.+
T Consensus 448 Kv~~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMves- 526 (1394)
T KOG0298|consen 448 KVLLYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVES- 526 (1394)
T ss_pred eEEEEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcc-
Confidence 7887777322 12255668999999998763222111 000 011111 2489999999854
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCC----CChHHHHHHhcCCc
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTAL----ANAGDLADWLGVGE 869 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl----~~~~~~~~~l~~~~ 869 (1492)
........+.++. .....+.|+|+ .+.--+-.||+..+
T Consensus 527 ssS~~a~M~~rL~--------~in~W~VTGTPiq~Iddl~~Ll~fLk~~P 568 (1394)
T KOG0298|consen 527 SSSAAAEMVRRLH--------AINRWCVTGTPIQKIDDLFPLLEFLKLPP 568 (1394)
T ss_pred hHHHHHHHHHHhh--------hhceeeecCCchhhhhhhHHHHHHhcCCC
Confidence 2233334444443 34568999994 33333555665544
No 402
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.32 E-value=0.27 Score=54.40 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=28.2
Q ss_pred cccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 804 NYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 804 ~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
...+.++.+|+||||.|..+- ...+++.........++++..--+.
T Consensus 125 ~~~~~fKiiIlDEcdsmtsda-------q~aLrr~mE~~s~~trFiLIcnyls 170 (346)
T KOG0989|consen 125 YPCPPFKIIILDECDSMTSDA-------QAALRRTMEDFSRTTRFILICNYLS 170 (346)
T ss_pred CCCCcceEEEEechhhhhHHH-------HHHHHHHHhccccceEEEEEcCChh
Confidence 345677999999999885432 1222222233455788888766553
No 403
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=93.29 E-value=0.33 Score=62.79 Aligned_cols=119 Identities=20% Similarity=0.229 Sum_probs=86.2
Q ss_pred HHHHHH-hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 73 KVVDSL-RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 73 ~~~~~~-~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
+++--+ ..|+.||||..--+.-.-+|.+|..... ..--.-|+
T Consensus 690 KLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~y-------------------------------------pfQRLDGs 732 (1373)
T KOG0384|consen 690 KLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGY-------------------------------------PFQRLDGS 732 (1373)
T ss_pred HHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCC-------------------------------------cceeccCC
Confidence 333333 4578999998777777777777754321 12223689
Q ss_pred CChhhHHHHHHHHhCC---CccEEEeccccccccCC-CcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceE
Q 043190 152 MLRSDRGLTERLFSEG---LLKVLVCTATLAWGVNL-PAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEG 227 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g---~i~vlvaT~tla~Gvnl-p~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~ 227 (1492)
+..+.|+...+.|..- ..-.|.||-.-+.|||| .|.+||| ||. .|.+-.=+|-.-||-|-|.-..=.+
T Consensus 733 vrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVII-----FDS---DWNPQNDLQAqARaHRIGQkk~VnV 804 (1373)
T KOG0384|consen 733 VRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVII-----FDS---DWNPQNDLQAQARAHRIGQKKHVNV 804 (1373)
T ss_pred cchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEE-----eCC---CCCcchHHHHHHHHHhhcccceEEE
Confidence 9999999999999864 35679999999999999 6777888 663 3555557886677777776566778
Q ss_pred EEEeCCccH
Q 043190 228 IIITSHDKL 236 (1492)
Q Consensus 228 i~~~~~~~~ 236 (1492)
|.+++.+..
T Consensus 805 YRLVTk~Tv 813 (1373)
T KOG0384|consen 805 YRLVTKNTV 813 (1373)
T ss_pred EEEecCCch
Confidence 888877654
No 404
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.24 E-value=0.35 Score=55.39 Aligned_cols=39 Identities=28% Similarity=0.286 Sum_probs=29.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
.+..+++.||||+|||..+...+...... .+.+++|+.-
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~ 67 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISL 67 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEc
Confidence 67899999999999998777665555432 2677888764
No 405
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.23 E-value=1.3 Score=53.87 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=33.1
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE--cccHHHHHHHHHHHHHHh
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI--APLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i--~P~r~La~q~~~~~~~~~ 758 (1492)
.+..+.+.||||+|||+......-......+..++.++ -+.|.-+.++...|.+.+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~Aeil 312 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKIL 312 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHh
Confidence 45688999999999998765544333222222344333 234555666666665543
No 406
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.21 E-value=0.68 Score=52.52 Aligned_cols=53 Identities=26% Similarity=0.421 Sum_probs=34.7
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHHHh
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~~~ 758 (1492)
.+.++++||+|+|||+.+.-..... .. .+.+++++. +.|.-+.++...|.+..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l-~~-~g~~V~li~~D~~r~~a~~ql~~~~~~~ 126 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKL-KK-QGKSVLLAAGDTFRAAAIEQLEEWAKRL 126 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH-Hh-cCCEEEEEeCCCCCHHHHHHHHHHHHhC
Confidence 4567888999999998665544433 22 356666654 45666666676666644
No 407
>PRK05973 replicative DNA helicase; Provisional
Probab=93.16 E-value=0.51 Score=51.87 Aligned_cols=129 Identities=19% Similarity=0.229 Sum_probs=68.6
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
..|.-++|.|++|+|||+.++..+...... +.+++|++---. ..|+.+++.. + |...... .
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes-~~~i~~R~~s-~----g~d~~~~-----------~ 122 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYT-EQDVRDRLRA-L----GADRAQF-----------A 122 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCC-HHHHHHHHHH-c----CCChHHh-----------c
Confidence 467899999999999999888877776653 677888864432 3455555443 2 2211000 0
Q ss_pred CCcEEEEC-chhhhHhhhcccCccccCcccEEEEecccccCCC-CccHHHHHHHHHHHhhhccCCceEEEEEcCC
Q 043190 782 SADIIIST-PEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-RGPILEVIVSRMRYISSQTERAVRFIGLSTA 854 (1492)
Q Consensus 782 ~~~Iiv~T-pe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~-~g~~~~~i~~~l~~~~~~~~~~~~ii~lSAT 854 (1492)
..-++... +...+.++++... -.+.++||||=+..+... ..+.+..++..++.+... .+.-+|++|-.
T Consensus 123 ~~~~~d~~d~~~~~~ii~~l~~---~~~~~lVVIDsLq~l~~~~~~~el~~~~~~Lk~~Ak~--~gitvIl~sQl 192 (237)
T PRK05973 123 DLFEFDTSDAICADYIIARLAS---APRGTLVVIDYLQLLDQRREKPDLSVQVRALKSFARE--RGLIIVFISQI 192 (237)
T ss_pred cceEeecCCCCCHHHHHHHHHH---hhCCCEEEEEcHHHHhhcccchhHHHHHHHHHHHHHh--CCCeEEEEecC
Confidence 00011111 1111122222111 124589999999977422 223344444445555442 36666666544
No 408
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=93.16 E-value=0.69 Score=58.28 Aligned_cols=122 Identities=13% Similarity=0.138 Sum_probs=76.3
Q ss_pred HHHHHHH-hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcC
Q 043190 72 KKVVDSL-RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHA 150 (1492)
Q Consensus 72 ~~~~~~~-~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hha 150 (1492)
+.+...+ ..++.+||-+.|++..+.++..|.... .+.+-+. |
T Consensus 460 ~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l------------------------------------~~~~l~q-g 502 (636)
T TIGR03117 460 LSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGI------------------------------------PAEIVIQ-S 502 (636)
T ss_pred HHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhc------------------------------------CCCEEEe-C
Confidence 3344444 356789999999999999998775432 1113333 3
Q ss_pred CCChhhHHHHHHHHhC----CCccEEEeccccccccCC------C-----cEEEEEeccceecCCC-----------C--
Q 043190 151 GMLRSDRGLTERLFSE----GLLKVLVCTATLAWGVNL------P-----AHTVVIKGTQLYDPKA-----------G-- 202 (1492)
Q Consensus 151 gl~~~~R~~ve~~f~~----g~i~vlvaT~tla~Gvnl------p-----~~~vVI~~~~~~~~~~-----------~-- 202 (1492)
..+ .|....+.|++ |.-.||++|+.+-.|||+ | -..|||... +|.+.. |
T Consensus 503 ~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI~kL-PF~~~dp~a~~~~~~~~g~~ 579 (636)
T TIGR03117 503 EKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLIITCA-PFGLNRSLSMLKRIRKTSVR 579 (636)
T ss_pred CCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCCCCCCcccEEEEEeC-CCCcCChHHHHHHHHhcCCC
Confidence 322 34557778887 478999999999999999 2 355777532 233211 1
Q ss_pred CcccC-----chhhhhhccCCCCCC-ccceEEEEeCC
Q 043190 203 GWRDL-----GMLDIFGRAGRPQFD-RSGEGIIITSH 233 (1492)
Q Consensus 203 ~~~~~-----~~~~~~GRAGR~~~d-~~G~~i~~~~~ 233 (1492)
++... .+.|-+||-=|..-| ..|..+++-..
T Consensus 580 ~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 580 PWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred hHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 12222 234678999998766 25766666444
No 409
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.16 E-value=1.2 Score=53.47 Aligned_cols=127 Identities=12% Similarity=0.162 Sum_probs=64.4
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEccc-HHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPL-KAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMAL 780 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~-r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~ 780 (1492)
.++.+.+.||||+|||+......-...... .....++...+ |.-+.++...+.+ .+|+.+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~----ilGvp~~~v----------- 254 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGK----LLGVSVRSI----------- 254 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHH----HcCCceecC-----------
Confidence 567899999999999987653332222221 12334444444 3334444443333 335443221
Q ss_pred CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHH
Q 043190 781 LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGD 860 (1492)
Q Consensus 781 ~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~ 860 (1492)
.++..+...+.. +++.++++||.+- +......+...+..+.......-.++.+|||.. .++
T Consensus 255 -------~~~~dl~~al~~------l~~~d~VLIDTaG-----rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~-~~~ 315 (420)
T PRK14721 255 -------KDIADLQLMLHE------LRGKHMVLIDTVG-----MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS-GDT 315 (420)
T ss_pred -------CCHHHHHHHHHH------hcCCCEEEecCCC-----CCcchHHHHHHHHHHhccCCCceEEEEEcCCCC-HHH
Confidence 123333222222 4567889999863 222223344444444332233456778999963 344
Q ss_pred HHH
Q 043190 861 LAD 863 (1492)
Q Consensus 861 ~~~ 863 (1492)
+.+
T Consensus 316 ~~~ 318 (420)
T PRK14721 316 LDE 318 (420)
T ss_pred HHH
Confidence 433
No 410
>PRK08084 DNA replication initiation factor; Provisional
Probab=93.08 E-value=0.37 Score=53.65 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=24.4
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
.+.+++++||+|+|||..+....-.. .. .+.+++|+.-
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~-~~-~~~~v~y~~~ 81 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAEL-SQ-RGRAVGYVPL 81 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH-Hh-CCCeEEEEEH
Confidence 34689999999999998765333222 22 2556666543
No 411
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.96 E-value=0.69 Score=52.48 Aligned_cols=143 Identities=21% Similarity=0.252 Sum_probs=81.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEE-cCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEM-TGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~-~g~~~~~~---- 777 (1492)
.++-++|.|+||.|||..++..+......+ +..++|++.--. ..+++.++-.... ++....+ .|....+.
T Consensus 18 ~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlEm~-~~~l~~R~la~~s---~v~~~~i~~g~l~~~e~~~~ 92 (259)
T PF03796_consen 18 PGELTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLEMS-EEELAARLLARLS---GVPYNKIRSGDLSDEEFERL 92 (259)
T ss_dssp TT-EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESSS--HHHHHHHHHHHHH---TSTHHHHHCCGCHHHHHHHH
T ss_pred cCcEEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCCCC-HHHHHHHHHHHhh---cchhhhhhccccCHHHHHHH
Confidence 567899999999999998887777766542 478888877422 2233333322221 2211111 12222111
Q ss_pred ----hccCCCcEEE-EC----chhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhhccC
Q 043190 778 ----MALLSADIII-ST----PEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 778 ----~~~~~~~Iiv-~T----pe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
..+....+.+ .+ ++.+...++..... ...+++||||=+|.+.. .+...+..+...++.+....
T Consensus 93 ~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~--~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~lA~~~- 169 (259)
T PF03796_consen 93 QAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKRE--GKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKALAKEL- 169 (259)
T ss_dssp HHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHH--STTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhh--ccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHc-
Confidence 1112333443 33 33444444432222 26789999999998853 24455667788888777644
Q ss_pred CceEEEEEcCC
Q 043190 844 RAVRFIGLSTA 854 (1492)
Q Consensus 844 ~~~~ii~lSAT 854 (1492)
++.++++|..
T Consensus 170 -~i~vi~~sQl 179 (259)
T PF03796_consen 170 -NIPVIALSQL 179 (259)
T ss_dssp -TSEEEEEEEB
T ss_pred -CCeEEEcccc
Confidence 7778888765
No 412
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=92.91 E-value=0.55 Score=59.48 Aligned_cols=90 Identities=19% Similarity=0.158 Sum_probs=67.6
Q ss_pred HHHHhcccEEEEcCCCChhhHHHHHHHHhCCCc--cE-EEeccccccccCC-CcEEEEEeccceecCCCCCcccCchhhh
Q 043190 137 LIELFGLAVGVHHAGMLRSDRGLTERLFSEGLL--KV-LVCTATLAWGVNL-PAHTVVIKGTQLYDPKAGGWRDLGMLDI 212 (1492)
Q Consensus 137 l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i--~v-lvaT~tla~Gvnl-p~~~vVI~~~~~~~~~~~~~~~~~~~~~ 212 (1492)
+..+.++.+-..||.|+..+|..+.+.|-+-.- +| |.+|-.-+-|+|| .|.+||+ ||+. |.+..-.|-
T Consensus 614 ~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil-----~D~d---WNPa~d~QA 685 (776)
T KOG0390|consen 614 LCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL-----FDPD---WNPAVDQQA 685 (776)
T ss_pred HHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE-----eCCC---CCchhHHHH
Confidence 334446668889999999999999999997443 44 5666677899999 7777887 6653 556667889
Q ss_pred hhccCCCCCCccceEEEEeCCc
Q 043190 213 FGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 213 ~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
++||=|+|.-+.-.+|.+....
T Consensus 686 maR~~RdGQKk~v~iYrLlatG 707 (776)
T KOG0390|consen 686 MARAWRDGQKKPVYIYRLLATG 707 (776)
T ss_pred HHHhccCCCcceEEEEEeecCC
Confidence 9999999966556666665544
No 413
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.90 E-value=0.41 Score=58.24 Aligned_cols=36 Identities=31% Similarity=0.456 Sum_probs=23.9
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEE
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYI 740 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i 740 (1492)
..+++|.||+|+|||.+.-.. ++.+... ++..++++
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~v-~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKKV-FEELEEIAVKVVYVYI 91 (394)
T ss_pred CCeEEEECCCCCCHHHHHHHH-HHHHHHhcCCcEEEEE
Confidence 368999999999999976543 3433322 23556666
No 414
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=92.89 E-value=0.28 Score=49.46 Aligned_cols=79 Identities=20% Similarity=0.385 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhcCCc---eEEEeccc--cccccCCCCc---EEEEecceeeeCcc----------------Ccccc--C
Q 043190 987 DKDRSLVEELFANNKI---QVLVCTST--LAWGVNLPAH---LVIIKGTEYYDGKT----------------KRYVD--F 1040 (1492)
Q Consensus 987 ~~~R~~v~~~f~~g~~---~vLvaT~~--l~~Gvdip~~---~~VI~~~~~~~~~~----------------~~~~~--~ 1040 (1492)
..+...+++.|++..- .||+++.- +++|||+|+. .+||.|.++-.+.. ..+.+ .
T Consensus 30 ~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 109 (142)
T smart00491 30 SGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYL 109 (142)
T ss_pred CchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 3455788888987543 69998887 9999999984 46666665433221 00001 1
Q ss_pred C--HHHHHHhhcccCCCCCCCceEEEEE
Q 043190 1041 P--ITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 1041 ~--~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
+ ...+.|.+||+-|.. ++.|..+++
T Consensus 110 ~~a~~~~~Qa~GR~iR~~-~D~g~i~l~ 136 (142)
T smart00491 110 FDAMRALAQAIGRAIRHK-NDYGVVVLL 136 (142)
T ss_pred HHHHHHHHHHhCccccCc-cceEEEEEE
Confidence 1 457899999999975 556765554
No 415
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=92.88 E-value=0.38 Score=60.14 Aligned_cols=137 Identities=16% Similarity=0.239 Sum_probs=74.8
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhcc-------CCEEEEEcCCCCc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQL-------GKEMVEMTGDYTP 775 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~-------g~~v~~~~g~~~~ 775 (1492)
--+|+.=-.|-|||+...-.+...+.+. +-.++||++|...+. .|.+.|.+++ .+.|..+..-...
T Consensus 697 sGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~-----NW~~EFekWm~~~e~~~~leV~eL~~vkr~ 771 (1567)
T KOG1015|consen 697 SGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTAL-----NWMNEFEKWMEGLEDDEKLEVSELATVKRP 771 (1567)
T ss_pred cchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHH-----HHHHHHHHhcccccccccceeehhhhccCh
Confidence 3456666679999997665544444332 357899999987644 3444454442 2333333222121
Q ss_pred ch------hccCCCcEEEECchhhhHhhhcccC--c---------cccCcccEEEEecccccCCCCccHHHHHHHHHHHh
Q 043190 776 DL------MALLSADIIISTPEKWDGISRNWHS--R---------NYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYI 838 (1492)
Q Consensus 776 ~~------~~~~~~~Iiv~Tpe~l~~l~~~~~~--~---------~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~ 838 (1492)
.. .+.....|.|.-++.+..|...... . ..-...++||.||+|.+-.+-. .+...+.+++
T Consensus 772 e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeks-a~Skam~~ir-- 848 (1567)
T KOG1015|consen 772 EERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKS-AVSKAMNSIR-- 848 (1567)
T ss_pred HHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchH-HHHHHHHHHH--
Confidence 11 2233567888777776555432111 0 0112458999999999865432 3333444443
Q ss_pred hhccCCceEEEEEcCCC
Q 043190 839 SSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 839 ~~~~~~~~~ii~lSATl 855 (1492)
..|-|+|++|+
T Consensus 849 ------tkRRI~LTGTP 859 (1567)
T KOG1015|consen 849 ------TKRRIILTGTP 859 (1567)
T ss_pred ------hheeEEeecCc
Confidence 22446667775
No 416
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=92.79 E-value=0.84 Score=56.60 Aligned_cols=123 Identities=21% Similarity=0.173 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcC
Q 043190 71 YKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHA 150 (1492)
Q Consensus 71 ~~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hha 150 (1492)
...+....++|..+|+|..||..-.-+-..|... . ++...-.-|
T Consensus 536 ~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~-~-----------------------------------~ysylRmDG 579 (923)
T KOG0387|consen 536 AKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRA-K-----------------------------------GYSYLRMDG 579 (923)
T ss_pred HHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhc-C-----------------------------------CceEEEecC
Confidence 3344455578889999999998766555544420 0 111233457
Q ss_pred CCChhhHHHHHHHHhCCCc-c-EEEeccccccccCC-CcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceE
Q 043190 151 GMLRSDRGLTERLFSEGLL-K-VLVCTATLAWGVNL-PAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEG 227 (1492)
Q Consensus 151 gl~~~~R~~ve~~f~~g~i-~-vlvaT~tla~Gvnl-p~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~ 227 (1492)
.-+...|....+.|.++.- . .|.+|-+-..|+|| .|.+||| |||. |.+..=.|-.-||-|.|.-+.=.+
T Consensus 580 tT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII-----fDPd---WNPStD~QAreRawRiGQkkdV~V 651 (923)
T KOG0387|consen 580 TTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII-----FDPD---WNPSTDNQARERAWRIGQKKDVVV 651 (923)
T ss_pred CCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE-----ECCC---CCCccchHHHHHHHhhcCccceEE
Confidence 7788999999999998764 3 47899999999999 7888888 8875 566666776667777775444556
Q ss_pred EEEeCCccHH
Q 043190 228 IIITSHDKLA 237 (1492)
Q Consensus 228 i~~~~~~~~~ 237 (1492)
|.+.+...++
T Consensus 652 YRL~t~gTIE 661 (923)
T KOG0387|consen 652 YRLMTAGTIE 661 (923)
T ss_pred EEEecCCcHH
Confidence 6666655443
No 417
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.74 E-value=0.65 Score=56.79 Aligned_cols=120 Identities=18% Similarity=0.240 Sum_probs=66.8
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCC
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~ 782 (1492)
.+..+++.|++|+|||+.....+..... .+.+++|+.-.- -..|+..+..+ + |... +
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a~--~g~~vlYvs~Ee-s~~qi~~ra~r-l----g~~~---------~------ 135 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLAA--AGGKVLYVSGEE-SASQIKLRAER-L----GLPS---------D------ 135 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEEccc-cHHHHHHHHHH-c----CCCh---------h------
Confidence 4678899999999999987776665543 267899988543 33444443322 2 3210 0
Q ss_pred CcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-C----Cc--cHHHHHHHHHHHhhhccCCceEEEEEc
Q 043190 783 ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E----RG--PILEVIVSRMRYISSQTERAVRFIGLS 852 (1492)
Q Consensus 783 ~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~----~g--~~~~~i~~~l~~~~~~~~~~~~ii~lS 852 (1492)
++.+.....+..+..... -.+.++||||+++.+.. + .| .++..++..+..+.+.. +..+++.+
T Consensus 136 -~l~~~~e~~l~~i~~~i~----~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~--~itvilv~ 205 (446)
T PRK11823 136 -NLYLLAETNLEAILATIE----EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQR--GIAVFLVG 205 (446)
T ss_pred -cEEEeCCCCHHHHHHHHH----hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHc--CCEEEEEe
Confidence 133333333444433211 13578999999996532 1 12 23444555565554433 55555553
No 418
>smart00847 HA2 Helicase associated domain (HA2) Add an annotation. This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.
Probab=92.72 E-value=0.14 Score=47.58 Aligned_cols=57 Identities=19% Similarity=0.093 Sum_probs=44.6
Q ss_pred HHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCC
Q 043190 1153 TFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGA 1212 (1492)
Q Consensus 1153 ~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a 1212 (1492)
++..|...|+|+.++ .+|++|+.++.+|++|+.+++++.+.....+..+++.+++..
T Consensus 2 A~~~L~~LgAld~~~---~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~l 58 (92)
T smart00847 2 ALELLYELGALDDDG---RLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAML 58 (92)
T ss_pred HHHHHHHCCCcCCCC---CcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHh
Confidence 678899999996542 689999999999999999999987654214566777666543
No 419
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=92.70 E-value=1.2 Score=51.77 Aligned_cols=53 Identities=23% Similarity=0.352 Sum_probs=33.0
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc-c-cHHHHHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA-P-LKAIVRERMNDWKDR 757 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~-P-~r~La~q~~~~~~~~ 757 (1492)
.+..+.+.||+|+|||+.+...... +.. .+.+++++. . .|+.+.++...|...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~-l~~-~g~~V~Li~~D~~r~~a~eql~~~a~~ 167 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK-YKA-QGKKVLLAAGDTFRAAAIEQLQVWGER 167 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH-HHh-cCCeEEEEecCccchhhHHHHHHHHHH
Confidence 4567889999999999865443322 222 255666554 3 466666666666554
No 420
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.67 E-value=0.71 Score=64.57 Aligned_cols=61 Identities=20% Similarity=0.246 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHh---ccCCCceEEEEcccHHHHHH
Q 043190 688 HFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLF---NTQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l---~~~~~~~~l~i~P~r~La~q 749 (1492)
.|++.|.+++..++.+ ++.++|.|..|+|||+..- ++...+ ....+.+++.++||-.-|.+
T Consensus 967 ~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 967 GLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFR-AVMSAVNTLPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHH-HHHHHHHHhhcccCceEEEECCcHHHHHH
Confidence 5899999999998854 5689999999999998743 333332 23345678999999876654
No 421
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=92.66 E-value=0.2 Score=53.30 Aligned_cols=53 Identities=23% Similarity=0.314 Sum_probs=48.9
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhc
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQ 1372 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~ 1372 (1492)
..|.++||||+..+++|.++|+.|+.+|..++.+++..+ +++..+..|.+++.
T Consensus 3 ~~L~~IpGIG~krakkLl~~GF~Sve~Ik~AS~eEL~~V~GIg~k~AekI~e~l~ 57 (232)
T PRK12766 3 EELEDISGVGPSKAEALREAGFESVEDVRAADQSELAEVDGIGNALAARIKADVG 57 (232)
T ss_pred cccccCCCcCHHHHHHHHHcCCCCHHHHHhCCHHHHHHccCCCHHHHHHHHHHhc
Confidence 568899999999999999999999999999999999988 77888888988887
No 422
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=92.64 E-value=0.5 Score=57.53 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=25.6
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAP 742 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P 742 (1492)
+.+++.||+|+|||..+. ++...+.. .++.+++|+..
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHhCCCCcEEEEEH
Confidence 468999999999998764 44444433 33567788753
No 423
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.60 E-value=0.65 Score=55.14 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=23.8
Q ss_pred HHHHHHHhhhcCCC--cEEEecCCCCCchHHHHHHH
Q 043190 692 IQTQIFHILYHTDN--NVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 692 ~Q~~~i~~~~~~~~--~vli~apTGsGKT~~~~l~i 725 (1492)
...+.+..++.+++ ++++.||+|+|||..+....
T Consensus 22 ~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~ 57 (337)
T PRK12402 22 EVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALA 57 (337)
T ss_pred HHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHH
Confidence 34444555554555 79999999999999875443
No 424
>CHL00181 cbbX CbbX; Provisional
Probab=92.56 E-value=0.93 Score=51.96 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=17.7
Q ss_pred CCcEEEecCCCCCchHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~ 724 (1492)
+-++++.||+|+|||.++-..
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 457999999999999987654
No 425
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.54 E-value=0.76 Score=56.22 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=26.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAP 742 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P 742 (1492)
+.+++.||+|+|||..+. ++...+. ..++.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhCCCCeEEEEEH
Confidence 469999999999998764 4444433 334567888764
No 426
>PRK05642 DNA replication initiation factor; Validated
Probab=92.52 E-value=0.59 Score=51.92 Aligned_cols=36 Identities=19% Similarity=0.251 Sum_probs=23.8
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
+.++++||+|+|||..+. ++...+.. .+.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~-a~~~~~~~-~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQ-AACLRFEQ-RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHh-CCCcEEEeeH
Confidence 578999999999998643 44433332 2566776553
No 427
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.44 E-value=0.92 Score=57.73 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=15.3
Q ss_pred EEEecCCCCCchHHHHHHH
Q 043190 707 VLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 707 vli~apTGsGKT~~~~l~i 725 (1492)
++|.|+||+|||.+.-..+
T Consensus 784 LYIyG~PGTGKTATVK~VL 802 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYSVI 802 (1164)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4599999999999876543
No 428
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.43 E-value=0.53 Score=67.66 Aligned_cols=62 Identities=29% Similarity=0.415 Sum_probs=46.4
Q ss_pred CCCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHH---HHHHHHhccCCCceEEEEcccHHHHHH
Q 043190 687 SHFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAE---LAMLHLFNTQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~---l~il~~l~~~~~~~~l~i~P~r~La~q 749 (1492)
..|++.|.+++..++.+ ++.++|.|+.|+|||+... -++.+.+.. .+.+++.++||-.-+.+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-~g~~v~glApT~~Aa~~ 1083 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-EQLQVIGLAPTHEAVGE 1083 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-cCCeEEEEeChHHHHHH
Confidence 35899999999998743 4677889999999998762 234444433 46789999999776654
No 429
>PRK06921 hypothetical protein; Provisional
Probab=92.32 E-value=0.9 Score=51.41 Aligned_cols=44 Identities=23% Similarity=0.206 Sum_probs=28.8
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~ 748 (1492)
.+.++++.||||+|||..+. +|...+....+..++|+.. ..+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~~~g~~v~y~~~-~~l~~ 159 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMRKKGVPVLYFPF-VEGFG 159 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhhhcCceEEEEEH-HHHHH
Confidence 36789999999999998764 4555544322566666653 34433
No 430
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.26 E-value=0.69 Score=66.56 Aligned_cols=62 Identities=18% Similarity=0.268 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~ 751 (1492)
.|++-|.+++..++.+ ++-.+|.|+.|+|||.+. -.+...+.. .+.+++.++|+-.-+....
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l-~~l~~~~~~-~G~~V~~lAPTgrAA~~L~ 491 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIA-QLLLHLASE-QGYEIQIITAGSLSAQELR 491 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHH-HHHHHHHHh-cCCeEEEEeCCHHHHHHHH
Confidence 4889999999998844 478899999999999864 344444443 4789999999987665433
No 431
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.23 E-value=1.9 Score=48.61 Aligned_cols=121 Identities=17% Similarity=0.236 Sum_probs=60.6
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccH-HHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLK-AIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA 779 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r-~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~ 779 (1492)
.+..+.+.||+|+|||+.+......... .+.++.++. +.| +.+. +|+... ...+..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~--~~~~v~~i~~D~~ri~~~~----ql~~~~-~~~~~~~~~----------- 135 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHG--KKKTVGFITTDHSRIGTVQ----QLQDYV-KTIGFEVIA----------- 135 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEecCCCCHHHHH----HHHHHh-hhcCceEEe-----------
Confidence 4578999999999999976654443322 234444443 333 2333 233322 111322211
Q ss_pred cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 780 LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 780 ~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
..+|+.+...++.... ..++++++||-+=.... ....++.+.. +.....+...++.+|||..
T Consensus 136 -------~~~~~~l~~~l~~l~~---~~~~D~ViIDt~Gr~~~-~~~~l~el~~----~~~~~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 136 -------VRDEAAMTRALTYFKE---EARVDYILIDTAGKNYR-ASETVEEMIE----TMGQVEPDYICLTLSASMK 197 (270)
T ss_pred -------cCCHHHHHHHHHHHHh---cCCCCEEEEECCCCCcC-CHHHHHHHHH----HHhhhCCCeEEEEEcCccC
Confidence 1245444433332111 23678999999864421 1123333333 2222334455777899863
No 432
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.22 E-value=0.23 Score=53.02 Aligned_cols=54 Identities=28% Similarity=0.464 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
...+++-|.+.+...+..+.+++++||||||||+.. -+++..+. +..+++.+--
T Consensus 7 ~g~~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll-~aL~~~i~--~~~~~i~ied 60 (186)
T cd01130 7 QGTFSPLQAAYLWLAVEARKNILISGGTGSGKTTLL-NALLAFIP--PDERIITIED 60 (186)
T ss_pred cCCCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH-HHHHhhcC--CCCCEEEECC
Confidence 345788899999988888999999999999999865 33444443 2345555433
No 433
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.16 E-value=0.18 Score=58.94 Aligned_cols=53 Identities=23% Similarity=0.291 Sum_probs=38.2
Q ss_pred HHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHH
Q 043190 692 IQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 692 ~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La 747 (1492)
-..+.+..+...+.|++|+||||||||+.. -+++..+.. ..+++.+-.+.+|.
T Consensus 150 ~~~~~l~~~v~~~~nilI~G~tGSGKTTll-~aLl~~i~~--~~rivtiEd~~El~ 202 (344)
T PRK13851 150 DLEAFLHACVVGRLTMLLCGPTGSGKTTMS-KTLISAIPP--QERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCccHHHHH-HHHHcccCC--CCCEEEECCCcccc
Confidence 344555666667899999999999999864 455555543 56788888887763
No 434
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.05 E-value=0.35 Score=63.70 Aligned_cols=90 Identities=29% Similarity=0.341 Sum_probs=66.2
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
..|||-|.+++.. ...+++|.|..|||||.+...-+...+... ...++++++-|+..|.++.+++.+.+ |.
T Consensus 3 ~~Ln~~Q~~av~~---~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~----~~ 75 (726)
T TIGR01073 3 AHLNPEQREAVKT---TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLL----GP 75 (726)
T ss_pred cccCHHHHHHHhC---CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHh----cc
Confidence 4599999999975 356899999999999998887777666432 34689999999999988777776543 21
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhh-hHhhhc
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKW-DGISRN 799 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~ 799 (1492)
...++.|+|-..| ..+++.
T Consensus 76 ----------------~~~~~~i~TFHs~~~~iLr~ 95 (726)
T TIGR01073 76 ----------------VAEDIWISTFHSMCVRILRR 95 (726)
T ss_pred ----------------ccCCcEEEcHHHHHHHHHHH
Confidence 0135788998886 334443
No 435
>PRK06904 replicative DNA helicase; Validated
Probab=92.04 E-value=0.71 Score=56.79 Aligned_cols=143 Identities=17% Similarity=0.179 Sum_probs=78.5
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcC-CCCcch--
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTG-DYTPDL-- 777 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g-~~~~~~-- 777 (1492)
..|+-++|.|.||.|||..++-.+...... .+..++|.+.- --..|+..++-.... ++.... ..| ..+.+.
T Consensus 219 ~~G~LiiIaarPg~GKTafalnia~~~a~~-~g~~Vl~fSlE-Ms~~ql~~Rlla~~s---~v~~~~i~~g~~l~~~e~~ 293 (472)
T PRK06904 219 QPSDLIIVAARPSMGKTTFAMNLCENAAMA-SEKPVLVFSLE-MPAEQIMMRMLASLS---RVDQTKIRTGQNLDQQDWA 293 (472)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEecc-CCHHHHHHHHHHhhC---CCCHHHhccCCCCCHHHHH
Confidence 377889999999999998765444443322 25667776554 234555555443322 222111 123 222211
Q ss_pred ------hcc-CCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhh
Q 043190 778 ------MAL-LSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISS 840 (1492)
Q Consensus 778 ------~~~-~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~ 840 (1492)
... ...++.|- |+..+....++.... ...+++||||=.+++.. .+...+..+...++.+..
T Consensus 294 ~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~--~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAk 371 (472)
T PRK06904 294 KISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRE--NGGLSLIMVDYLQLMRAPGFEDNRTLEIAEISRSLKALAK 371 (472)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEecHHhcCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 111 13345553 344443333332111 12578999999998742 233446677777777766
Q ss_pred ccCCceEEEEEcC
Q 043190 841 QTERAVRFIGLST 853 (1492)
Q Consensus 841 ~~~~~~~ii~lSA 853 (1492)
.. ++.+|++|-
T Consensus 372 el--~ipVi~lsQ 382 (472)
T PRK06904 372 EL--KVPVVALSQ 382 (472)
T ss_pred Hh--CCeEEEEEe
Confidence 43 777888874
No 436
>PLN03025 replication factor C subunit; Provisional
Probab=92.04 E-value=1.3 Score=51.91 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=16.8
Q ss_pred CcEEEecCCCCCchHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~ 724 (1492)
.+++++||+|+|||..+...
T Consensus 35 ~~lll~Gp~G~GKTtla~~l 54 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILAL 54 (319)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 47999999999999876543
No 437
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=0.92 Score=53.70 Aligned_cols=27 Identities=26% Similarity=0.599 Sum_probs=19.7
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhcc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNT 731 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~ 731 (1492)
..|+++.||||+|||.+.-. +.+.+..
T Consensus 42 p~n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 42 PSNIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred CccEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 35799999999999987654 4444443
No 438
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=91.99 E-value=0.54 Score=59.82 Aligned_cols=111 Identities=20% Similarity=0.210 Sum_probs=65.2
Q ss_pred HHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCC
Q 043190 73 KVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGM 152 (1492)
Q Consensus 73 ~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl 152 (1492)
.+.+....|+|+||-..|-...+.+.+.|.+.......+ -|-+|
T Consensus 421 ~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VL---------------------------------NAk~h--- 464 (822)
T COG0653 421 DIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVL---------------------------------NAKNH--- 464 (822)
T ss_pred HHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceee---------------------------------ccccH---
Confidence 344444789999999999999988888776432110000 12233
Q ss_pred ChhhHHHHHHHHhCCCc-cEEEeccccccccCC--CcE---------EEEEeccceecCCCCCcccCchh-hhhhccCCC
Q 043190 153 LRSDRGLTERLFSEGLL-KVLVCTATLAWGVNL--PAH---------TVVIKGTQLYDPKAGGWRDLGML-DIFGRAGRP 219 (1492)
Q Consensus 153 ~~~~R~~ve~~f~~g~i-~vlvaT~tla~Gvnl--p~~---------~vVI~~~~~~~~~~~~~~~~~~~-~~~GRAGR~ 219 (1492)
.|+.-+-+ ..|.. -|-+||+-+.||-|| +.. ..|| ||.+-.+.. +- |.-|||||-
T Consensus 465 ---~~EA~Iia-~AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VI-gTERhESRR-------IDnQLRGRsGRQ 532 (822)
T COG0653 465 ---AREAEIIA-QAGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVI-GTERHESRR-------IDNQLRGRAGRQ 532 (822)
T ss_pred ---HHHHHHHh-hcCCCCccccccccccCCcccccCCCHHHHHHhCCcEEE-ecccchhhH-------HHHHhhcccccC
Confidence 22222222 23333 467999999999997 333 1233 343322211 22 577999998
Q ss_pred CCCccceEEEEeCC
Q 043190 220 QFDRSGEGIIITSH 233 (1492)
Q Consensus 220 ~~d~~G~~i~~~~~ 233 (1492)
| ..|.+-.+.+-
T Consensus 533 G--DpG~S~F~lSl 544 (822)
T COG0653 533 G--DPGSSRFYLSL 544 (822)
T ss_pred C--Ccchhhhhhhh
Confidence 8 46777666653
No 439
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.97 E-value=0.61 Score=56.42 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=16.5
Q ss_pred cEEEecCCCCCchHHHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~i 725 (1492)
.++++||.|+|||.++-..+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999999876543
No 440
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=91.96 E-value=0.42 Score=48.17 Aligned_cols=84 Identities=23% Similarity=0.262 Sum_probs=55.2
Q ss_pred EEEcCCCChhhHHHHHHHHhCCC-ccEEEeccccccccCCCc---EEEEEeccceecCCC----------------CCcc
Q 043190 146 GVHHAGMLRSDRGLTERLFSEGL-LKVLVCTATLAWGVNLPA---HTVVIKGTQLYDPKA----------------GGWR 205 (1492)
Q Consensus 146 ~~hhagl~~~~R~~ve~~f~~g~-i~vlvaT~tla~Gvnlp~---~~vVI~~~~~~~~~~----------------~~~~ 205 (1492)
.+..-+....+...+.+.|++.. -.||++|..++.|||+|. +.|||-|...-+|.. .++.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~ 104 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFD 104 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchh
Confidence 34445566666788888898754 379999988999999986 478887754332221 1122
Q ss_pred c-------CchhhhhhccCCCCCCccceEEEE
Q 043190 206 D-------LGMLDIFGRAGRPQFDRSGEGIII 230 (1492)
Q Consensus 206 ~-------~~~~~~~GRAGR~~~d~~G~~i~~ 230 (1492)
. ....|.+||+=|...| .|..+++
T Consensus 105 ~~~~~~a~~~l~Qa~GR~iR~~~D-~g~i~l~ 135 (141)
T smart00492 105 FVSLPDAMRTLAQCVGRLIRGAND-YGVVVIA 135 (141)
T ss_pred HHHHHHHHHHHHHHhCccccCcCc-eEEEEEE
Confidence 1 1234578999997765 5765554
No 441
>PRK04328 hypothetical protein; Provisional
Probab=91.92 E-value=0.96 Score=50.83 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=30.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA 741 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~ 741 (1492)
.+..++|.||+|+|||..+...+.+.+.. +.+++|+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis 58 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVA 58 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEE
Confidence 57789999999999999888888776654 67788876
No 442
>PRK08506 replicative DNA helicase; Provisional
Probab=91.87 E-value=0.6 Score=57.63 Aligned_cols=142 Identities=18% Similarity=0.229 Sum_probs=79.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g~~~~~~---- 777 (1492)
.|.-++|.|+||.|||..++-.+..... .+.+++|++.- .-..|+..++..... |+.... ..|+.+.+.
T Consensus 191 ~G~LivIaarpg~GKT~fal~ia~~~~~--~g~~V~~fSlE-Ms~~ql~~Rlla~~s---~v~~~~i~~~~l~~~e~~~~ 264 (472)
T PRK08506 191 KGDLIIIAARPSMGKTTLCLNMALKALN--QDKGVAFFSLE-MPAEQLMLRMLSAKT---SIPLQNLRTGDLDDDEWERL 264 (472)
T ss_pred CCceEEEEcCCCCChHHHHHHHHHHHHh--cCCcEEEEeCc-CCHHHHHHHHHHHhc---CCCHHHHhcCCCCHHHHHHH
Confidence 6788999999999999988776666543 25677777554 234555555433221 222111 123333211
Q ss_pred ----hccCCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCCC-----CccHHHHHHHHHHHhhhccC
Q 043190 778 ----MALLSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-----RGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 778 ----~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~-----~g~~~~~i~~~l~~~~~~~~ 843 (1492)
....+..+.|- |+..+....++.... ...+++||||=.+++... +...+..+...++.+...+
T Consensus 265 ~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~--~~~~~lvvIDyLql~~~~~~~~~r~~ev~~isr~LK~lAkel- 341 (472)
T PRK08506 265 SDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQ--HPEIGLAVIDYLQLMSGSGNFKDRHLQISEISRGLKLLAREL- 341 (472)
T ss_pred HHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEcChhhccCCCCCCCHHHHHHHHHHHHHHHHHHh-
Confidence 11223455553 333444444432211 235899999999988522 2233455666677666543
Q ss_pred CceEEEEEcCC
Q 043190 844 RAVRFIGLSTA 854 (1492)
Q Consensus 844 ~~~~ii~lSAT 854 (1492)
++.+|++|-.
T Consensus 342 -~ipVi~lsQL 351 (472)
T PRK08506 342 -DIPIIALSQL 351 (472)
T ss_pred -CCcEEEEeec
Confidence 6777877754
No 443
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=91.86 E-value=1.6 Score=54.35 Aligned_cols=70 Identities=17% Similarity=0.256 Sum_probs=49.7
Q ss_pred HHHHHHHHhhhc----CC----CcEEEecCCCCCchHHHHHHHHHHh-cc-CCCceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 691 PIQTQIFHILYH----TD----NNVLLGAPTGSGKTISAELAMLHLF-NT-QSDMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 691 ~~Q~~~i~~~~~----~~----~~vli~apTGsGKT~~~~l~il~~l-~~-~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
|+|.-++..++. .+ +.+++.-|=|.|||.......+-.+ .. ..+..++++++++.-|...++.+...+..
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 567766666651 11 3578888999999986655444333 22 24678999999999999999988876654
No 444
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.84 E-value=1 Score=55.06 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=17.0
Q ss_pred CcEEEecCCCCCchHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~ 724 (1492)
+.++++||.|+|||+++.+.
T Consensus 36 ha~Lf~Gp~G~GKTT~Aril 55 (491)
T PRK14964 36 QSILLVGASGVGKTTCARII 55 (491)
T ss_pred ceEEEECCCCccHHHHHHHH
Confidence 46999999999999987644
No 445
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.83 E-value=0.92 Score=56.52 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=27.0
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcccHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P~r~La~q 749 (1492)
+.++|.|++|+|||.... ++...+. ..++.+++|+.- ..++.+
T Consensus 315 NpL~LyG~sGsGKTHLL~-AIa~~a~~~~~g~~V~Yita-eef~~e 358 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLH-AIGHYARRLYPGTRVRYVSS-EEFTNE 358 (617)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEeeH-HHHHHH
Confidence 348999999999998654 3444333 234567777654 344443
No 446
>PRK05748 replicative DNA helicase; Provisional
Probab=91.81 E-value=0.59 Score=57.62 Aligned_cols=143 Identities=18% Similarity=0.159 Sum_probs=79.2
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE-EEcCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV-EMTGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~-~~~g~~~~~~---- 777 (1492)
.|.-++|.|+||.|||..++..+...... .+..++|++.- .-..|+..++....+ ++... ...|......
T Consensus 202 ~G~livIaarpg~GKT~~al~ia~~~a~~-~g~~v~~fSlE-ms~~~l~~R~l~~~~---~v~~~~i~~~~l~~~e~~~~ 276 (448)
T PRK05748 202 PNDLIIVAARPSVGKTAFALNIAQNVATK-TDKNVAIFSLE-MGAESLVMRMLCAEG---NIDAQRLRTGQLTDDDWPKL 276 (448)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHh-CCCeEEEEeCC-CCHHHHHHHHHHHhc---CCCHHHhhcCCCCHHHHHHH
Confidence 67889999999999999877666554332 25566666543 224455555433222 21111 1123333211
Q ss_pred ----hccCCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCC------CCccHHHHHHHHHHHhhhcc
Q 043190 778 ----MALLSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA------ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 778 ----~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~------~~g~~~~~i~~~l~~~~~~~ 842 (1492)
....+..+.|. |++.+....++.... ...+++||||=.|.+.. .+...+..+...++.+...+
T Consensus 277 ~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~--~~~~~~vvIDyL~li~~~~~~~~~r~~~i~~i~~~LK~lAke~ 354 (448)
T PRK05748 277 TIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQE--HGGLGLILIDYLQLIQGSGRSGENRQQEVSEISRSLKALAKEL 354 (448)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEccchhcCCCCCCCcCHHHHHHHHHHHHHHHHHHh
Confidence 11224456554 333343333332211 12688999999998842 12234556777777776543
Q ss_pred CCceEEEEEcCC
Q 043190 843 ERAVRFIGLSTA 854 (1492)
Q Consensus 843 ~~~~~ii~lSAT 854 (1492)
++.+|++|-.
T Consensus 355 --~i~vi~lsQl 364 (448)
T PRK05748 355 --KVPVIALSQL 364 (448)
T ss_pred --CCeEEEeccc
Confidence 7778888765
No 447
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=91.79 E-value=1.1 Score=53.35 Aligned_cols=120 Identities=16% Similarity=0.214 Sum_probs=64.6
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCC
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~ 782 (1492)
.+.-+++.|++|+|||+.....+..... .+.+++|+.-... ..|+..+..+ + |...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~--~g~~VlYvs~EEs-~~qi~~Ra~r-l----g~~~---------------- 136 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAK--RGGKVLYVSGEES-PEQIKLRADR-L----GIST---------------- 136 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHh--cCCeEEEEECCcC-HHHHHHHHHH-c----CCCc----------------
Confidence 4678999999999999987766555433 2578999876433 3343333222 2 2211
Q ss_pred CcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-C----Cc--cHHHHHHHHHHHhhhccCCceEEEEEc
Q 043190 783 ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E----RG--PILEVIVSRMRYISSQTERAVRFIGLS 852 (1492)
Q Consensus 783 ~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~----~g--~~~~~i~~~l~~~~~~~~~~~~ii~lS 852 (1492)
.++.+.....+..+..... -.+.++||||+++.+.. + .| .++..++..+..+.+.. +.-+++.+
T Consensus 137 ~~l~l~~e~~le~I~~~i~----~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~--~itvilvg 207 (372)
T cd01121 137 ENLYLLAETNLEDILASIE----ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKER--NIPIFIVG 207 (372)
T ss_pred ccEEEEccCcHHHHHHHHH----hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 0122222222333333211 13578999999996621 1 11 23455556666555433 45555543
No 448
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.77 E-value=1.9 Score=51.70 Aligned_cols=123 Identities=11% Similarity=0.144 Sum_probs=62.9
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCC
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~ 782 (1492)
..+.++|++|+|||+.+.-.... +.. .+.++++++ |.|.-|.++.+.+.+. .++.+....+..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~-l~~-~G~kV~lV~~D~~R~aA~eQLk~~a~~----~~vp~~~~~~~~--------- 165 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYY-YQR-KGFKPCLVCADTFRAGAFDQLKQNATK----ARIPFYGSYTES--------- 165 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHH-CCCCEEEEcCcccchhHHHHHHHHhhc----cCCeEEeecCCC---------
Confidence 46789999999998765543332 222 245555543 3566666555554443 244443222111
Q ss_pred CcEEEECchhh-hHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 783 ADIIISTPEKW-DGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 783 ~~Iiv~Tpe~l-~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
.|..+ ...+.... -..+++||||=+-.+. .-+.++..+..+.....+.-.++.++||...
T Consensus 166 ------dp~~i~~~~l~~~~----~~~~DvViIDTaGr~~-----~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq 226 (429)
T TIGR01425 166 ------DPVKIASEGVEKFK----KENFDIIIVDTSGRHK-----QEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQ 226 (429)
T ss_pred ------CHHHHHHHHHHHHH----hCCCCEEEEECCCCCc-----chHHHHHHHHHHhhhcCCcEEEEEeccccCh
Confidence 11110 00111100 1356788888886432 2233445555444444455667778888764
No 449
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.69 E-value=0.4 Score=66.45 Aligned_cols=123 Identities=19% Similarity=0.128 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
++|+-|.+++.. .++|++|+|.-|||||.+..--+++.+..+ ...++++++=|++.|.++-.++.+.+.+......
T Consensus 1 ~~t~~Q~~ai~~---~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~~~p 77 (1232)
T TIGR02785 1 QWTDEQWQAIYT---RGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKALQQEP 77 (1232)
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHHHhcCc
Confidence 368999999984 688999999999999999887777766543 2257999999999999999998887765421100
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhh-hHhhhcccCccccCcccEEEEeccc
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKW-DGISRNWHSRNYVKKVGLMILDEIH 818 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~i~liViDEaH 818 (1492)
...........-...-|+|-..+ ..++++......+ +.++=|.||..
T Consensus 78 ----~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~l-dP~F~i~de~e 125 (1232)
T TIGR02785 78 ----NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDL-DPSFRILTDTE 125 (1232)
T ss_pred ----hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCC-CCCceeCCHHH
Confidence 00000011111235578888886 4555553221111 12344578776
No 450
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=91.67 E-value=1.2 Score=51.20 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=16.9
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
+.++++.||+|+|||+++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 34899999999999998743
No 451
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.53 E-value=0.76 Score=57.38 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=16.8
Q ss_pred CcEEEecCCCCCchHHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~i 725 (1492)
..+|++||.|+|||.++....
T Consensus 38 HAyLF~GPpGvGKTTlAriLA 58 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARILA 58 (702)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 356999999999999875443
No 452
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.52 E-value=1.2 Score=46.85 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=26.5
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMN 752 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~ 752 (1492)
.+++.||+|+|||+.....+... .. .+.+++++. +.+.-..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~-~~-~g~~v~~i~~D~~~~~~~~~l~ 48 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYL-KK-KGKKVLLVAADTYRPAAIEQLR 48 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-HH-CCCcEEEEEcCCCChHHHHHHH
Confidence 36789999999999865544433 22 245665544 44433333333
No 453
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=91.46 E-value=1.1 Score=55.16 Aligned_cols=21 Identities=38% Similarity=0.444 Sum_probs=17.4
Q ss_pred CcEEEecCCCCCchHHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~i 725 (1492)
+.++++||.|+|||+++-+..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 379999999999999876543
No 454
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.34 E-value=0.52 Score=53.88 Aligned_cols=40 Identities=18% Similarity=0.178 Sum_probs=26.4
Q ss_pred CCHHHHHHHHhhh---cC-CCcEEEecCCCCCchHHHHHHHHHHh
Q 043190 689 FNPIQTQIFHILY---HT-DNNVLLGAPTGSGKTISAELAMLHLF 729 (1492)
Q Consensus 689 l~~~Q~~~i~~~~---~~-~~~vli~apTGsGKT~~~~l~il~~l 729 (1492)
+++.+.+++..+- .. ...+++.||+|+|||+.+-.. ...+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l-~~~l 67 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNL-LKRL 67 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHH-HHhc
Confidence 4556666665442 23 347899999999999876543 3433
No 455
>PRK08006 replicative DNA helicase; Provisional
Probab=91.23 E-value=1.1 Score=55.23 Aligned_cols=143 Identities=17% Similarity=0.168 Sum_probs=80.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEE-cCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEM-TGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~-~g~~~~~~---- 777 (1492)
.|+-++|.|.+|.|||..++-.+...... .+..++|.+.-- -..|+..++-.... ++....+ .|..+.+.
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlEM-~~~ql~~Rlla~~~---~v~~~~i~~~~l~~~e~~~~ 297 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLEM-PGEQIMMRMLASLS---RVDQTRIRTGQLDDEDWARI 297 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccC-CHHHHHHHHHHHhc---CCCHHHhhcCCCCHHHHHHH
Confidence 67889999999999998877655554332 256677775542 24455555443222 2221111 23332211
Q ss_pred ----hcc-CCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhhcc
Q 043190 778 ----MAL-LSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 778 ----~~~-~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~~~ 842 (1492)
... .+..+.|- |+..+....++.... ...+++||||=.|++.. .+...+..+...++.+...+
T Consensus 298 ~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~--~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lAkel 375 (471)
T PRK08006 298 SGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFRE--HGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKEL 375 (471)
T ss_pred HHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 011 34455554 333343334332111 13589999999998742 23344667777788777644
Q ss_pred CCceEEEEEcCC
Q 043190 843 ERAVRFIGLSTA 854 (1492)
Q Consensus 843 ~~~~~ii~lSAT 854 (1492)
++.+|++|-.
T Consensus 376 --~ipVi~LsQL 385 (471)
T PRK08006 376 --QVPVVALSQL 385 (471)
T ss_pred --CCeEEEEEec
Confidence 7788888743
No 456
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=91.16 E-value=2.4 Score=51.87 Aligned_cols=161 Identities=14% Similarity=0.193 Sum_probs=95.2
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
+.++.+|++..+..-=.+. + ..+-.+.--|=-.|||-.. .||+..+. .-.+-++.|++.-|-.++-+++++..
T Consensus 181 ~~lk~~Fdi~~~s~~~l~~----F-KQkaTVFLVPRRHGKTWf~-VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~ 254 (668)
T PHA03372 181 EYLLHVFDIEFLSESSLNI----F-KQKATVFLVPRRHGKTWFI-IPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEF 254 (668)
T ss_pred HHHHHHcCCcccCHHHHHH----h-hccceEEEecccCCceehH-HHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHH
Confidence 4556667777666433332 3 3455667779999999743 34444333 34588999999999998888888887
Q ss_pred HhhhccCCE-EEEEcCCCCcchhccCCCcEEEECchhhh---HhhhcccCccccCcccEEEEecccccCCCCccHHHHHH
Q 043190 757 RLVSQLGKE-MVEMTGDYTPDLMALLSADIIISTPEKWD---GISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIV 832 (1492)
Q Consensus 757 ~~~~~~g~~-v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~---~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~ 832 (1492)
++.++.+-+ +.... +..|.+.-|+.=. -......+...=++++++++||||.+. ...+..++
T Consensus 255 ~lrrwF~~~~vi~~k-----------~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~---~~a~~til 320 (668)
T PHA03372 255 RCRRMFPRKHTIENK-----------DNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIK---KDAFNTIL 320 (668)
T ss_pred HHhhhcCccceeeec-----------CcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccC---HHHHHHhh
Confidence 777665533 21111 1233333333210 000000111112478899999999883 34566666
Q ss_pred HHHHHhhhccCCceEEEEEcCCCCChHHHHHHh
Q 043190 833 SRMRYISSQTERAVRFIGLSTALANAGDLADWL 865 (1492)
Q Consensus 833 ~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l 865 (1492)
..|. +.+.++|..|.|= ..++-..|+
T Consensus 321 gfm~------q~~~KiIfISS~N-sg~~sTSfL 346 (668)
T PHA03372 321 GFLA------QNTTKIIFISSTN-TTNDATCFL 346 (668)
T ss_pred hhhc------ccCceEEEEeCCC-CCCccchHH
Confidence 6553 5688999999883 223334455
No 457
>PRK07004 replicative DNA helicase; Provisional
Probab=91.14 E-value=0.78 Score=56.35 Aligned_cols=143 Identities=16% Similarity=0.161 Sum_probs=78.0
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE-EEcCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV-EMTGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~-~~~g~~~~~~---- 777 (1492)
.|+-++|.|.||+|||..++-.+...... .+..+++.+.-- -..|++.++-.... ++... ...|....+.
T Consensus 212 ~g~liviaarpg~GKT~~al~ia~~~a~~-~~~~v~~fSlEM-~~~ql~~R~la~~~---~v~~~~i~~g~l~~~e~~~~ 286 (460)
T PRK07004 212 GGELIIVAGRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSMEM-PGTQLAMRMLGSVG---RLDQHRMRTGRLTDEDWPKL 286 (460)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCCC-CHHHHHHHHHHhhc---CCCHHHHhcCCCCHHHHHHH
Confidence 67889999999999998776555544322 255666664432 23444444432221 11111 1123333211
Q ss_pred ----hccCCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhhccC
Q 043190 778 ----MALLSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 778 ----~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
..+.+..+.|. |+..+....++.... ...+++||||=.+.+.. .+...+..+...++.+...+
T Consensus 287 ~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~--~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lAkel- 363 (460)
T PRK07004 287 THAVQKMSEAQLFIDETGGLNPMELRSRARRLARQ--CGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLAKEL- 363 (460)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--CCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHHHHh-
Confidence 12234566664 333333333332111 23578999999998852 13334567777777776543
Q ss_pred CceEEEEEcCC
Q 043190 844 RAVRFIGLSTA 854 (1492)
Q Consensus 844 ~~~~ii~lSAT 854 (1492)
++.+|++|--
T Consensus 364 -~ipVi~lsQL 373 (460)
T PRK07004 364 -DVPVIALSQL 373 (460)
T ss_pred -CCeEEEEecc
Confidence 7778888754
No 458
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=91.04 E-value=1.1 Score=57.61 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=61.4
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcCC--ceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcc
Q 043190 974 LQFGIGLHHAGLNDKDRSLVEELFANNK--IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGR 1051 (1492)
Q Consensus 974 ~~~~v~~~h~~l~~~~R~~v~~~f~~g~--~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GR 1051 (1492)
.++-..-+.|...-++|...++.|.... .-.|++|..-+.|||+-+.+.||- ||..-+..+|--..+--||+|+
T Consensus 1299 HgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvF----YDsDwNPtMDaQAQDrChRIGq 1374 (1958)
T KOG0391|consen 1299 HGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVF----YDSDWNPTMDAQAQDRCHRIGQ 1374 (1958)
T ss_pred cceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEE----ecCCCCchhhhHHHHHHHhhcC
Confidence 3445556678899999999999998654 356789999999999998888774 7754432233223344444444
Q ss_pred cCCCCCCCceEEEEEecCCc
Q 043190 1052 AGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1052 agR~g~~~~G~~i~l~~~~~ 1071 (1492)
+ +.-..|.|+++..
T Consensus 1375 t------RDVHIYRLISe~T 1388 (1958)
T KOG0391|consen 1375 T------RDVHIYRLISERT 1388 (1958)
T ss_pred c------cceEEEEeeccch
Confidence 4 5678888887654
No 459
>PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length. It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B.
Probab=91.03 E-value=0.2 Score=47.36 Aligned_cols=65 Identities=15% Similarity=0.077 Sum_probs=42.5
Q ss_pred HHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccc
Q 043190 319 DAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVR 390 (1492)
Q Consensus 319 ~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R 390 (1492)
+|++.|...|+|+.+ + .+|++|+.|+.++++|.-++++......++ ...++.+.|...+ .++..+
T Consensus 1 ~A~~~L~~Lgald~~---~--~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~-~~~~~~iaa~ls~-~~~f~~ 65 (102)
T PF04408_consen 1 KALELLKSLGALDEN---G--NLTPLGRKMSQLPLDPRLAKMLLYGIQFGC-LDEALIIAAILSV-RSPFIN 65 (102)
T ss_dssp -HHHHHHHTTSB-TT---S---B-HHHHHHTTSSS-HHHHHHHHHHHHCT--HHHHHHHHHHHTS-S--B--
T ss_pred CHHHHHHHCCCCCCC---C--CcCHHHHHHHHCCCchHhHhHhhhcccccc-HHHHHHHHHHHcC-CCcccC
Confidence 368899999999533 2 799999999999999999999998766554 4455555555544 555444
No 460
>PRK08760 replicative DNA helicase; Provisional
Probab=91.00 E-value=0.78 Score=56.55 Aligned_cols=142 Identities=18% Similarity=0.165 Sum_probs=79.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE-EEcCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV-EMTGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~-~~~g~~~~~~---- 777 (1492)
.|.-++|.|+||.|||..++-.+...... .+..++|.+.--. ..|+..++..... ++... ...|......
T Consensus 228 ~G~LivIaarPg~GKTafal~iA~~~a~~-~g~~V~~fSlEMs-~~ql~~Rl~a~~s---~i~~~~i~~g~l~~~e~~~~ 302 (476)
T PRK08760 228 PTDLIILAARPAMGKTTFALNIAEYAAIK-SKKGVAVFSMEMS-ASQLAMRLISSNG---RINAQRLRTGALEDEDWARV 302 (476)
T ss_pred CCceEEEEeCCCCChhHHHHHHHHHHHHh-cCCceEEEeccCC-HHHHHHHHHHhhC---CCcHHHHhcCCCCHHHHHHH
Confidence 67889999999999999877665554332 2456766654322 3455555433221 11111 1123322211
Q ss_pred ----hccCCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhhccC
Q 043190 778 ----MALLSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 778 ----~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
..+.+..+.|. |++.+....++... -..+++||||=.+.+.. .+...+..+...++.+...+
T Consensus 303 ~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~---~~~~~lVvIDyLql~~~~~~~~~r~~ei~~Isr~LK~lAkel- 378 (476)
T PRK08760 303 TGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKR---EHDLGLIVIDYLQLMSVPGNSENRATEISEISRSLKGLAKEL- 378 (476)
T ss_pred HHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHH---hcCCCEEEEecHHhcCCCCCCcccHHHHHHHHHHHHHHHHHh-
Confidence 12223455554 33444333443221 23588999999998741 23344667777788776644
Q ss_pred CceEEEEEcCC
Q 043190 844 RAVRFIGLSTA 854 (1492)
Q Consensus 844 ~~~~ii~lSAT 854 (1492)
++.+|++|-.
T Consensus 379 -~ipVi~lsQL 388 (476)
T PRK08760 379 -NVPVIALSQL 388 (476)
T ss_pred -CCEEEEeecc
Confidence 7778888744
No 461
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=90.93 E-value=4 Score=48.65 Aligned_cols=52 Identities=25% Similarity=0.312 Sum_probs=31.6
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKD 756 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~ 756 (1492)
+..++++||||+|||+.+...+...... .+.++.++. +.|..+.++...+.+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~-~G~~V~Lit~Dt~R~aA~eQLk~yAe 276 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH-MGKSVSLYTTDNYRIAAIEQLKRYAD 276 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh-cCCeEEEecccchhhhHHHHHHHHHH
Confidence 4568899999999998877655443222 244443332 446666665555443
No 462
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=90.91 E-value=1.4 Score=54.59 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=62.4
Q ss_pred cEEEEcCCCChhhHHHHHHHHhCCC---ccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCC
Q 043190 144 AVGVHHAGMLRSDRGLTERLFSEGL---LKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQ 220 (1492)
Q Consensus 144 gv~~hhagl~~~~R~~ve~~f~~g~---i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~ 220 (1492)
...-.-|..+-++|....+.|-.-. .-.|++|-..+.||||-+.++||- ||.. |.+-.-+|-.-||-|-|
T Consensus 513 ~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIl----yDSD---WNPQ~DLQAmDRaHRIG 585 (971)
T KOG0385|consen 513 EYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVIL----YDSD---WNPQVDLQAMDRAHRIG 585 (971)
T ss_pred eeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEE----ecCC---CCchhhhHHHHHHHhhC
Confidence 3555679999999999999998654 456899999999999977777664 6643 33333455555555555
Q ss_pred CCccceEEEEeCCccHH
Q 043190 221 FDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 221 ~d~~G~~i~~~~~~~~~ 237 (1492)
.-..=.++.+++.+..+
T Consensus 586 Q~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 586 QKKPVVVYRLITENTVE 602 (971)
T ss_pred CcCceEEEEEeccchHH
Confidence 54667888888776644
No 463
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=90.81 E-value=1 Score=56.77 Aligned_cols=21 Identities=33% Similarity=0.419 Sum_probs=17.0
Q ss_pred CcEEEecCCCCCchHHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~i 725 (1492)
..+|++||.|+|||+++....
T Consensus 39 Ha~Lf~GP~GvGKTTlAriLA 59 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARILA 59 (709)
T ss_pred eEEEEECCCCCcHHHHHHHHH
Confidence 368999999999999876433
No 464
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=90.78 E-value=1.3 Score=46.15 Aligned_cols=94 Identities=19% Similarity=0.153 Sum_probs=51.3
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSA 783 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~ 783 (1492)
+.-.+++||-.||||.-.+..+-+.-. .+.++++..|... .+++.. .|..-.|-. ..
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~--~g~~v~vfkp~iD----------~R~~~~---~V~Sr~G~~--------~~ 60 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKE--AGMKVLVFKPAID----------TRYGVG---KVSSRIGLS--------SE 60 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHH--cCCeEEEEecccc----------cccccc---eeeeccCCc--------cc
Confidence 445689999999999965554444333 3778888888632 122111 122222211 11
Q ss_pred cEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC
Q 043190 784 DIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE 823 (1492)
Q Consensus 784 ~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~ 823 (1492)
-+.|-.+..+...+..... ...+++|.||||+.++.+
T Consensus 61 A~~i~~~~~i~~~i~~~~~---~~~~~~v~IDEaQF~~~~ 97 (201)
T COG1435 61 AVVIPSDTDIFDEIAALHE---KPPVDCVLIDEAQFFDEE 97 (201)
T ss_pred ceecCChHHHHHHHHhccc---CCCcCEEEEehhHhCCHH
Confidence 2344444443333332111 122789999999988643
No 465
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=90.68 E-value=0.64 Score=55.93 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=18.8
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHh
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLF 729 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l 729 (1492)
..+++|+||+|+|||.++-. +++.+
T Consensus 40 ~~~i~I~G~~GtGKT~l~~~-~~~~l 64 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTKY-VMKEL 64 (365)
T ss_pred CCcEEEECCCCCCHHHHHHH-HHHHH
Confidence 36899999999999987643 44433
No 466
>PRK08840 replicative DNA helicase; Provisional
Probab=90.64 E-value=1.6 Score=53.53 Aligned_cols=143 Identities=16% Similarity=0.174 Sum_probs=77.6
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcCCCCcch---
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTGDYTPDL--- 777 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g~~~~~~--- 777 (1492)
..|+-++|.|.||.|||..++-.+...... .+..++|.+.--. ..|+..++-.... ++.... ..|....+.
T Consensus 215 ~~g~LiviaarPg~GKTafalnia~~~a~~-~~~~v~~fSlEMs-~~ql~~Rlla~~s---~v~~~~i~~~~l~~~e~~~ 289 (464)
T PRK08840 215 QGSDLIIVAARPSMGKTTFAMNLCENAAMD-QDKPVLIFSLEMP-AEQLMMRMLASLS---RVDQTKIRTGQLDDEDWAR 289 (464)
T ss_pred CCCceEEEEeCCCCchHHHHHHHHHHHHHh-CCCeEEEEeccCC-HHHHHHHHHHhhC---CCCHHHHhcCCCCHHHHHH
Confidence 367889999999999998775544444322 2566777755422 4455555433222 221111 123222111
Q ss_pred -----hcc-CCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhhc
Q 043190 778 -----MAL-LSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISSQ 841 (1492)
Q Consensus 778 -----~~~-~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~~ 841 (1492)
..+ ....+.|- |+..+....++.... ...+++||||=.|++.. .+...+..+...++.+...
T Consensus 290 ~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~--~~~~~lvvIDYLql~~~~~~~~~r~~ei~~isr~LK~lAke 367 (464)
T PRK08840 290 ISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIARE--HGGLSMIMVDYLQLMRVPALSDNRTLEIAEISRSLKALAKE 367 (464)
T ss_pred HHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEccHHhcCCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 111 23455553 233333333332111 12588999999998841 2333456677777777664
Q ss_pred cCCceEEEEEcC
Q 043190 842 TERAVRFIGLST 853 (1492)
Q Consensus 842 ~~~~~~ii~lSA 853 (1492)
+ ++.+|++|-
T Consensus 368 l--~ipVi~LsQ 377 (464)
T PRK08840 368 L--NVPVVALSQ 377 (464)
T ss_pred h--CCeEEEEEe
Confidence 4 777888874
No 467
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=90.59 E-value=0.33 Score=56.66 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=35.8
Q ss_pred HHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHH
Q 043190 695 QIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 695 ~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La 747 (1492)
+.+..+...+.|++|+|+||||||+.. -+++..+.. ..+++.+--+.+|.
T Consensus 151 ~~L~~~v~~~~nili~G~tgSGKTTll-~aL~~~ip~--~~ri~tiEd~~El~ 200 (332)
T PRK13900 151 EFLEHAVISKKNIIISGGTSTGKTTFT-NAALREIPA--IERLITVEDAREIV 200 (332)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHH-HHHHhhCCC--CCeEEEecCCCccc
Confidence 445555567899999999999999864 456666543 56777776666653
No 468
>PRK10867 signal recognition particle protein; Provisional
Probab=90.50 E-value=1.8 Score=52.30 Aligned_cols=52 Identities=17% Similarity=0.241 Sum_probs=31.8
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE--cccHHHHHHHHHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI--APLKAIVRERMNDWKDR 757 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i--~P~r~La~q~~~~~~~~ 757 (1492)
..++++||+|+|||+.+.-.+...... .+.+++++ =+.|+.+.++.+.|.+.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~-~G~kV~lV~~D~~R~aa~eQL~~~a~~ 154 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKK-KKKKVLLVAADVYRPAAIEQLKTLGEQ 154 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHh-cCCcEEEEEccccchHHHHHHHHHHhh
Confidence 467899999999998766544433222 24444443 34666666666655543
No 469
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=90.48 E-value=1.5 Score=51.22 Aligned_cols=36 Identities=31% Similarity=0.396 Sum_probs=29.4
Q ss_pred CCHHHHHHHHhhhcCCC---cEEEecCCCCCchHHHHHH
Q 043190 689 FNPIQTQIFHILYHTDN---NVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~---~vli~apTGsGKT~~~~l~ 724 (1492)
.+|+|...+..++..++ -.+++||.|.|||..+...
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~ 42 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERL 42 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHH
Confidence 57999999999886553 5889999999999877543
No 470
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=90.40 E-value=3.8 Score=42.53 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=30.4
Q ss_pred HhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 795 GISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 795 ~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
.+.........-...+++||||||.|..+ ....++..| ...+....+|++|..+
T Consensus 89 ~i~~~~~~~~~~~~~KviiI~~ad~l~~~---a~NaLLK~L----Eepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 89 EIIEFLSLSPSEGKYKVIIIDEADKLTEE---AQNALLKTL----EEPPENTYFILITNNP 142 (162)
T ss_dssp HHHHHCTSS-TTSSSEEEEEETGGGS-HH---HHHHHHHHH----HSTTTTEEEEEEES-G
T ss_pred HHHHHHHHHHhcCCceEEEeehHhhhhHH---HHHHHHHHh----cCCCCCEEEEEEECCh
Confidence 33333333333467899999999988432 223333333 3445678888887654
No 471
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=90.40 E-value=0.29 Score=55.93 Aligned_cols=54 Identities=26% Similarity=0.354 Sum_probs=37.5
Q ss_pred HHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHH
Q 043190 691 PIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAI 746 (1492)
Q Consensus 691 ~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~L 746 (1492)
+...+.+......+.+++++||||||||+.. .+++..+... ..+++.+....++
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l-~all~~i~~~-~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLL-NALLEEIPPE-DERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHH-HHHHHHCHTT-TSEEEEEESSS-S
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHH-HHHhhhcccc-ccceEEeccccce
Confidence 3444555555556889999999999999876 5556655542 4788888777663
No 472
>PRK14873 primosome assembly protein PriA; Provisional
Probab=90.26 E-value=0.98 Score=57.71 Aligned_cols=72 Identities=26% Similarity=0.252 Sum_probs=59.5
Q ss_pred HHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCC
Q 043190 73 KVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGM 152 (1492)
Q Consensus 73 ~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl 152 (1492)
.+.+.+..|+|+||-++....+..+.+.+.+.... ..|+..|++|
T Consensus 180 ~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~-----------------------------------~~v~~lhS~l 224 (665)
T PRK14873 180 AAAATLRAGRGALVVVPDQRDVDRLEAALRALLGA-----------------------------------GDVAVLSAGL 224 (665)
T ss_pred HHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCC-----------------------------------CcEEEECCCC
Confidence 44555678999999999999999888888754320 2389999999
Q ss_pred ChhhHHHHHHHHhCCCccEEEeccccc
Q 043190 153 LRSDRGLTERLFSEGLLKVLVCTATLA 179 (1492)
Q Consensus 153 ~~~~R~~ve~~f~~g~i~vlvaT~tla 179 (1492)
++.+|.......++|+.+|+|-|-.+.
T Consensus 225 ~~~~R~~~w~~~~~G~~~IViGtRSAv 251 (665)
T PRK14873 225 GPADRYRRWLAVLRGQARVVVGTRSAV 251 (665)
T ss_pred CHHHHHHHHHHHhCCCCcEEEEcceeE
Confidence 999999999999999999999996543
No 473
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=90.24 E-value=0.48 Score=50.02 Aligned_cols=46 Identities=24% Similarity=0.365 Sum_probs=28.4
Q ss_pred hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHH
Q 043190 701 YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRE 749 (1492)
Q Consensus 701 ~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q 749 (1492)
++.++++++.||+|+|||..+...+-..+. .+..++|+ +..+|..+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFI-TASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEE-EHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEe-ecCceecc
Confidence 356789999999999999987655444444 35666664 44455544
No 474
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=90.22 E-value=0.93 Score=55.83 Aligned_cols=142 Identities=17% Similarity=0.172 Sum_probs=76.9
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g~~~~~~---- 777 (1492)
.|.-++|.|+||+|||..+...+...... .+..++|++.-- -..|+..++..... ++.... ..|......
T Consensus 194 ~G~l~vi~g~pg~GKT~~~l~~a~~~a~~-~g~~vl~~SlEm-~~~~i~~R~~~~~~---~v~~~~~~~g~l~~~~~~~~ 268 (434)
T TIGR00665 194 PSDLIILAARPSMGKTAFALNIAENAAIK-EGKPVAFFSLEM-SAEQLAMRMLSSES---RVDSQKLRTGKLSDEDWEKL 268 (434)
T ss_pred CCeEEEEEeCCCCChHHHHHHHHHHHHHh-CCCeEEEEeCcC-CHHHHHHHHHHHhc---CCCHHHhccCCCCHHHHHHH
Confidence 67889999999999998877666654432 256677775532 23444444433221 222111 123332211
Q ss_pred ----hccCCCcEEEE-----CchhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhhccC
Q 043190 778 ----MALLSADIIIS-----TPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISSQTE 843 (1492)
Q Consensus 778 ----~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~~~~ 843 (1492)
....+..+.|. |++.+...+++.... ..+++||||=.+.+.. .+...+..+...++.+...+
T Consensus 269 ~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~---~~~~~vvID~l~~i~~~~~~~~r~~~i~~i~~~Lk~lA~e~- 344 (434)
T TIGR00665 269 TSAAGKLSEAPLYIDDTPGLTITELRAKARRLKRE---HGLGLIVIDYLQLMSGSGRSENRQQEVSEISRSLKALAKEL- 344 (434)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh---cCCCEEEEcchHhcCCCCCCCCHHHHHHHHHHHHHHHHHHh-
Confidence 11223345542 333333333332211 2478999999998742 12233556667777666543
Q ss_pred CceEEEEEcCC
Q 043190 844 RAVRFIGLSTA 854 (1492)
Q Consensus 844 ~~~~ii~lSAT 854 (1492)
++.++++|-.
T Consensus 345 -~i~vi~lsql 354 (434)
T TIGR00665 345 -NVPVIALSQL 354 (434)
T ss_pred -CCeEEEEecc
Confidence 6777777754
No 475
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=90.08 E-value=1.8 Score=52.95 Aligned_cols=36 Identities=36% Similarity=0.544 Sum_probs=25.7
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
+.+++.||+|+|||..+. ++...+.. .+.+++|+..
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~-~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRE-SGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHH-cCCCEEEeeH
Confidence 468999999999998654 44444433 2677888764
No 476
>PRK13342 recombination factor protein RarA; Reviewed
Probab=90.06 E-value=0.87 Score=55.50 Aligned_cols=19 Identities=37% Similarity=0.662 Sum_probs=16.3
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
.++++.||+|+|||+.+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4799999999999987654
No 477
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.91 E-value=0.35 Score=53.36 Aligned_cols=41 Identities=27% Similarity=0.403 Sum_probs=30.1
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
..=++|.||||||||+. +.+|+..+.++....++=|---.+
T Consensus 125 ~GLILVTGpTGSGKSTT-lAamId~iN~~~~~HIlTIEDPIE 165 (353)
T COG2805 125 RGLILVTGPTGSGKSTT-LAAMIDYINKHKAKHILTIEDPIE 165 (353)
T ss_pred CceEEEeCCCCCcHHHH-HHHHHHHHhccCCcceEEecCchH
Confidence 45788999999999876 457888888776666665544433
No 478
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=89.91 E-value=2.3 Score=53.94 Aligned_cols=40 Identities=20% Similarity=0.468 Sum_probs=24.6
Q ss_pred CcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcC
Q 043190 807 KKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLST 853 (1492)
Q Consensus 807 ~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSA 853 (1492)
.+.+++||||+|+|... ....++..|. ......++|+.+-
T Consensus 118 gr~KVIIIDEah~LT~~---A~NALLKtLE----EPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH---AFNAMLKTLE----EPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHH---HHHHHHHHHH----hcCCCeEEEEEEC
Confidence 46789999999998532 3344444443 2234566666553
No 479
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.86 E-value=1.2 Score=53.78 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=20.0
Q ss_pred HHhhhcCC---CcEEEecCCCCCchHHHHHH
Q 043190 697 FHILYHTD---NNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 697 i~~~~~~~---~~vli~apTGsGKT~~~~l~ 724 (1492)
+...+.++ ..+|++||.|+|||+++...
T Consensus 28 L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 28 IQNSLRMGRVGHGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred HHHHHHhCCcceeEEEECCCCCCHHHHHHHH
Confidence 44444444 24889999999999987654
No 480
>PRK12766 50S ribosomal protein L32e; Provisional
Probab=89.84 E-value=0.53 Score=50.25 Aligned_cols=53 Identities=11% Similarity=0.201 Sum_probs=48.4
Q ss_pred cccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhc
Q 043190 488 HPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLG 541 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~ 541 (1492)
.+|.++| +||+..+++|.++|+ |++++..++.++|..+-| ++..+..|++.++
T Consensus 3 ~~L~~Ip-GIG~krakkLl~~GF~Sve~Ik~AS~eEL~~V~GIg~k~AekI~e~l~ 57 (232)
T PRK12766 3 EELEDIS-GVGPSKAEALREAGFESVEDVRAADQSELAEVDGIGNALAARIKADVG 57 (232)
T ss_pred cccccCC-CcCHHHHHHHHHcCCCCHHHHHhCCHHHHHHccCCCHHHHHHHHHHhc
Confidence 4688999 999999999999999 999999999999999966 6788999999887
No 481
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=89.83 E-value=1.1 Score=54.86 Aligned_cols=143 Identities=17% Similarity=0.191 Sum_probs=77.1
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g~~~~~~---- 777 (1492)
.|.-++|.|+||+|||..++..+...... .+..++|+..- .-..|+..++.... .|+.... ..|......
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~-~g~~v~~fSlE-m~~~~l~~Rl~~~~---~~v~~~~~~~~~l~~~~~~~~ 267 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALR-EGKPVLFFSLE-MSAEQLGERLLASK---SGINTGNIRTGRFNDSDFNRL 267 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECC-CCHHHHHHHHHHHH---cCCCHHHHhcCCCCHHHHHHH
Confidence 68899999999999998877665554322 25677777632 22334444432211 1222211 123332111
Q ss_pred ----hccCCCcEEEECc-----hhhhHhhhcccCccccCcccEEEEecccccCC----CCccHHHHHHHHHHHhhhccCC
Q 043190 778 ----MALLSADIIISTP-----EKWDGISRNWHSRNYVKKVGLMILDEIHLLGA----ERGPILEVIVSRMRYISSQTER 844 (1492)
Q Consensus 778 ----~~~~~~~Iiv~Tp-----e~l~~l~~~~~~~~~l~~i~liViDEaH~l~~----~~g~~~~~i~~~l~~~~~~~~~ 844 (1492)
....+.++.|.-. +.+....++.... ...+++||||=.|.+.. .+...+..+...++.+...+
T Consensus 268 ~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~--~~~~~lvvIDyLql~~~~~~~~~~~~~~~i~~~Lk~lAke~-- 343 (421)
T TIGR03600 268 LNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRK--KGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKEL-- 343 (421)
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh--cCCCCEEEEecccccCCCCCCCHHHHHHHHHHHHHHHHHHh--
Confidence 1122345555433 2233333322111 12588999999998753 23334456666777766543
Q ss_pred ceEEEEEcCC
Q 043190 845 AVRFIGLSTA 854 (1492)
Q Consensus 845 ~~~ii~lSAT 854 (1492)
++.+|++|-.
T Consensus 344 ~i~Vi~lsQl 353 (421)
T TIGR03600 344 DVPVVLLAQL 353 (421)
T ss_pred CCcEEEeccc
Confidence 6778888754
No 482
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=89.83 E-value=0.54 Score=54.13 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=34.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~ 748 (1492)
.+.-+.|.||+|||||+.++..+...... +.+++|+..-..+-.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~--g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP 97 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEcccchhHH
Confidence 56789999999999999988777766543 788889877655544
No 483
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.83 E-value=1.9 Score=51.09 Aligned_cols=40 Identities=20% Similarity=0.224 Sum_probs=27.3
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
.+.+++.||+|+|||-.....--......+..+++|+...
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se 152 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSE 152 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHH
Confidence 4679999999999998654444444444455677776653
No 484
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=89.79 E-value=1 Score=57.16 Aligned_cols=108 Identities=18% Similarity=0.197 Sum_probs=69.7
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccC-------CCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQ-------SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM 778 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~-------~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~ 778 (1492)
-.|+.-.-|-|||......++..-... ..+..++++|+ ++..|...++ ....+.....+..++| ...+..
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~el-ek~~~~~~l~v~v~~g-r~kd~~ 230 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTEL-EKVTEEDKLSIYVYHG-RTKDKS 230 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHH-hccCCccceEEEEecc-cccccc
Confidence 457888899999998776665432221 34567888887 4455544444 2233333456777888 555666
Q ss_pred ccCCCcEEEECchhhhH-hhhcccCccccCcccEEEEecccccCCC
Q 043190 779 ALLSADIIISTPEKWDG-ISRNWHSRNYVKKVGLMILDEIHLLGAE 823 (1492)
Q Consensus 779 ~~~~~~Iiv~Tpe~l~~-l~~~~~~~~~l~~i~liViDEaH~l~~~ 823 (1492)
.+.+.+|+++||+.+.. -+. --..-.+|+||+|.+...
T Consensus 231 el~~~dVVltTy~il~~~~l~-------~i~w~Riildea~~ikn~ 269 (674)
T KOG1001|consen 231 ELNSYDVVLTTYDILKNSPLV-------KIKWLRIVLDEAHTIKNK 269 (674)
T ss_pred hhcCCceEEeeHHHhhccccc-------ceeEEEEEeccccccCCc
Confidence 77788999999987652 111 123346999999988543
No 485
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.76 E-value=1.2 Score=55.46 Aligned_cols=42 Identities=19% Similarity=0.449 Sum_probs=25.7
Q ss_pred cCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCC
Q 043190 806 VKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTA 854 (1492)
Q Consensus 806 l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSAT 854 (1492)
..+.+++||||+|+|+.. ..+.+++-|. ..+...++|+.|.-
T Consensus 122 ~gr~KViIIDEah~Ls~~---AaNALLKTLE----EPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNH---AFNAMLKTLE----EPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHH---HHHHHHHhhc----cCCCCceEEEEeCC
Confidence 456889999999998532 3344443332 23446677776543
No 486
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=89.68 E-value=0.64 Score=49.98 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=24.3
Q ss_pred cccEEEEecccccCCCCcc---HHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 808 KVGLMILDEIHLLGAERGP---ILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 808 ~i~liViDEaH~l~~~~g~---~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
.-+++||||||..-..+.. .....+..+ ..+...+..++++|-.+..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l---~~hRh~g~diiliTQ~~~~ 128 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFL---AQHRHYGWDIILITQSPSQ 128 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGG---GGCCCTT-EEEEEES-GGG
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHH---HHhCcCCcEEEEEeCCHHH
Confidence 5579999999977543332 222333333 2333457788888877654
No 487
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=89.68 E-value=0.63 Score=51.02 Aligned_cols=18 Identities=50% Similarity=0.643 Sum_probs=15.7
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
+++++.||+|-|||+.+.
T Consensus 53 DHvLl~GPPGlGKTTLA~ 70 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAH 70 (332)
T ss_pred CeEEeeCCCCCcHHHHHH
Confidence 589999999999998653
No 488
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=89.67 E-value=2.5 Score=46.95 Aligned_cols=38 Identities=21% Similarity=0.214 Sum_probs=29.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
.+..+++.||+|+|||..+...+.+.+.. +..++|+.-
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~ 56 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTT 56 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEc
Confidence 57899999999999999877666555543 667788764
No 489
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.62 E-value=5.3 Score=45.49 Aligned_cols=127 Identities=17% Similarity=0.232 Sum_probs=70.9
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc--cHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCC
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP--LKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P--~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~ 782 (1492)
..+++.|-.|+|||+...-....... .+.++++.+- .||-|.++.+.|.+++ |..+..-. ...+ .
T Consensus 140 ~Vil~vGVNG~GKTTTIaKLA~~l~~--~g~~VllaA~DTFRAaAiEQL~~w~er~----gv~vI~~~--~G~D-----p 206 (340)
T COG0552 140 FVILFVGVNGVGKTTTIAKLAKYLKQ--QGKSVLLAAGDTFRAAAIEQLEVWGERL----GVPVISGK--EGAD-----P 206 (340)
T ss_pred EEEEEEecCCCchHhHHHHHHHHHHH--CCCeEEEEecchHHHHHHHHHHHHHHHh----CCeEEccC--CCCC-----c
Confidence 46788999999999875543333322 3666666653 6899999999998875 65554321 1111 1
Q ss_pred CcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhcc-C--CceEEEEEcCCCCC
Q 043190 783 ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQT-E--RAVRFIGLSTALAN 857 (1492)
Q Consensus 783 ~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~-~--~~~~ii~lSATl~~ 857 (1492)
+.|++ +.+ .. ..-+++++|++|=|-++... ..+..=+.++.++.... . +.--++.+-||.++
T Consensus 207 AaVaf------DAi-~~----Akar~~DvvliDTAGRLhnk--~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGq 271 (340)
T COG0552 207 AAVAF------DAI-QA----AKARGIDVVLIDTAGRLHNK--KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQ 271 (340)
T ss_pred HHHHH------HHH-HH----HHHcCCCEEEEeCcccccCc--hhHHHHHHHHHHHhccccCCCCceEEEEEEcccCh
Confidence 11222 111 11 12357889999999877432 22333333333333211 1 11244555788876
No 490
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.53 E-value=0.64 Score=55.65 Aligned_cols=42 Identities=36% Similarity=0.460 Sum_probs=30.9
Q ss_pred CCHHHHHHHHhhhcCC-CcEEEecCCCCCchHHHHHHHHHHhcc
Q 043190 689 FNPIQTQIFHILYHTD-NNVLLGAPTGSGKTISAELAMLHLFNT 731 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~-~~vli~apTGsGKT~~~~l~il~~l~~ 731 (1492)
+++.|.+.+..+++.. .=+++.||||||||+. +..++..+..
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTT-LY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTT-LYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHH-HHHHHHHhcC
Confidence 4688888888877443 4678899999999986 3456665554
No 491
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=89.53 E-value=1.5 Score=53.29 Aligned_cols=148 Identities=22% Similarity=0.259 Sum_probs=88.7
Q ss_pred ecCCcccccceEEEEEeeCCc-hhH---HHHHhhHHHHHHHHHHH-hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCcc
Q 043190 38 FDSSYRPIPLAQQYIGISEPN-FAA---RNELLSEICYKKVVDSL-RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLE 112 (1492)
Q Consensus 38 ~~~~~rpv~l~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~-~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~ 112 (1492)
++.+.++.||...+. +++.+ +.. +... .+.++.-+ .+|+.+|+|..--+....+-.+|...
T Consensus 1002 Id~E~~~~pLn~~i~-~Ppm~~FitdSgKL~~-----LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr-------- 1067 (1185)
T KOG0388|consen 1002 IDLENRHIPLNTTIY-VPPMNTFITDSGKLVV-----LDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYR-------- 1067 (1185)
T ss_pred CCccccCccccccee-cCcHHhhhccccceee-----HHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhh--------
Confidence 556678889877665 33221 111 1111 12222222 46889999987666554444444321
Q ss_pred ccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCcc-EEEeccccccccCCCcEEEEE
Q 043190 113 VFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLK-VLVCTATLAWGVNLPAHTVVI 191 (1492)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~-vlvaT~tla~Gvnlp~~~vVI 191 (1492)
++.---.-|...-.+|+.+...|....+- .|.+|-.-+.||||.|.+.||
T Consensus 1068 -----------------------------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTVi 1118 (1185)
T KOG0388|consen 1068 -----------------------------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVI 1118 (1185)
T ss_pred -----------------------------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccceEE
Confidence 11122345888889999999999987664 579999999999996655555
Q ss_pred eccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 192 KGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
- ||.. |.+---.|-+.||-|-|.-+.-.++.+.....
T Consensus 1119 F----YdSD---WNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1119 F----YDSD---WNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred E----ecCC---CCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 2 6643 33333455556666666545556666655444
No 492
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.49 E-value=1.4 Score=55.69 Aligned_cols=39 Identities=15% Similarity=0.418 Sum_probs=24.4
Q ss_pred cCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEE
Q 043190 806 VKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGL 851 (1492)
Q Consensus 806 l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~l 851 (1492)
....+++||||+|+|.. ...+.++.-+. ..+...++|+.
T Consensus 117 ~g~~KV~IIDEah~Ls~---~a~NALLKtLE----EPp~~v~FIL~ 155 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSR---HSFNALLKTLE----EPPEHVKFLLA 155 (647)
T ss_pred cCCCEEEEEechHhCCH---HHHHHHHHHHH----cCCCCeEEEEe
Confidence 35788999999999853 23445554443 23345566665
No 493
>PF05729 NACHT: NACHT domain
Probab=89.45 E-value=2 Score=44.60 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=26.0
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccCCCc---eEEEEcccHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDM---KVVYIAPLKAIVR 748 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~~~~---~~l~i~P~r~La~ 748 (1492)
-++|.|+.|+|||......+.......... .+++..+.+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 578999999999997654444433332212 3455555555444
No 494
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.44 E-value=1.4 Score=54.66 Aligned_cols=39 Identities=18% Similarity=0.475 Sum_probs=24.3
Q ss_pred CcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEc
Q 043190 807 KKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLS 852 (1492)
Q Consensus 807 ~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lS 852 (1492)
.+.+++||||+|++... ....++..+. ..+....+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~---a~naLLk~LE----epp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH---SFNALLKTLE----EPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH---HHHHHHHHHh----ccCCCeEEEEEE
Confidence 46789999999998532 3344444333 334566666654
No 495
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=89.36 E-value=0.54 Score=54.21 Aligned_cols=44 Identities=23% Similarity=0.176 Sum_probs=35.0
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~ 748 (1492)
.++-+.|.||+|||||+.++..+...... +.+++|+.+-.++-.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~--g~~~vyId~E~~~~~ 97 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKL--GGTVAFIDAEHALDP 97 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCCEEEECccccHHH
Confidence 46788999999999999888777766543 788999988766554
No 496
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.24 E-value=2 Score=53.36 Aligned_cols=24 Identities=38% Similarity=0.573 Sum_probs=17.9
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhc
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFN 730 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~ 730 (1492)
.++++||.|+|||+++.. +.+.+.
T Consensus 38 a~Lf~GppGtGKTTlA~~-lA~~l~ 61 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL-IAMAVN 61 (504)
T ss_pred EEEEECCCCCCHHHHHHH-HHHHHh
Confidence 359999999999998754 444443
No 497
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.21 E-value=1.9 Score=48.71 Aligned_cols=38 Identities=11% Similarity=0.175 Sum_probs=31.1
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
.+.-++|+||+|+|||..+...+.+.+.. +.+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEe
Confidence 56789999999999999888877776553 678888874
No 498
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.16 E-value=1 Score=58.18 Aligned_cols=38 Identities=16% Similarity=0.460 Sum_probs=23.8
Q ss_pred CcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEE
Q 043190 807 KKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGL 851 (1492)
Q Consensus 807 ~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~l 851 (1492)
.+.+++||||||+|.. ...+.++.-|. ..+...++|+.
T Consensus 118 gk~KViIIDEAh~LT~---eAqNALLKtLE----EPP~~vrFILa 155 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR---SSFNALLKTLE----EPPEHVKFLLA 155 (944)
T ss_pred CCcEEEEEechHhcCH---HHHHHHHHHHh----ccCCCeEEEEE
Confidence 4678999999999842 23444444333 23445677665
No 499
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=89.13 E-value=1.2 Score=49.65 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=35.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDW 754 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~ 754 (1492)
.+..+++.|++|+|||..+...+...+.+ +.+++|+.=... ..+..+++
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--g~~~~y~~~e~~-~~~~~~~~ 72 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--GKKVYVITTENT-SKSYLKQM 72 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--CCEEEEEEcCCC-HHHHHHHH
Confidence 56789999999999999888777776553 778888876433 23444443
No 500
>PRK09354 recA recombinase A; Provisional
Probab=89.04 E-value=0.67 Score=53.86 Aligned_cols=44 Identities=23% Similarity=0.166 Sum_probs=35.9
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~ 748 (1492)
.+.-+.|.||+|||||+.++..+...... +.+++|+..-.++-.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~--G~~~~yId~E~s~~~ 102 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKA--GGTAAFIDAEHALDP 102 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEECCccchHH
Confidence 46788999999999999988887776553 789999988776654
Done!