Query 043190
Match_columns 1492
No_of_seqs 867 out of 6527
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 00:27:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/043190.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/043190hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f92_B U5 small nuclear ribonu 100.0 2E-234 6E-239 2374.2 148.4 1473 3-1485 240-1723(1724)
2 4f92_B U5 small nuclear ribonu 100.0 2E-105 7E-110 1097.8 79.6 801 669-1485 60-885 (1724)
3 2p6r_A Afuhel308 helicase; pro 100.0 2.8E-78 9.7E-83 786.9 49.4 648 684-1382 21-692 (702)
4 2zj8_A DNA helicase, putative 100.0 8.5E-77 2.9E-81 775.2 55.4 651 684-1376 19-704 (720)
5 2va8_A SSO2462, SKI2-type heli 100.0 2.5E-75 8.6E-80 762.5 59.0 649 684-1377 26-714 (715)
6 2p6r_A Afuhel308 helicase; pro 100.0 4.8E-60 1.6E-64 615.5 33.9 500 5-551 170-692 (702)
7 2zj8_A DNA helicase, putative 100.0 5.6E-59 1.9E-63 607.2 40.3 505 7-545 169-704 (720)
8 2va8_A SSO2462, SKI2-type heli 100.0 1.9E-58 6.6E-63 603.0 41.1 499 7-546 175-714 (715)
9 3im1_A Protein SNU246, PRE-mRN 100.0 3.2E-56 1.1E-60 517.2 35.8 315 1168-1488 7-328 (328)
10 2q0z_X Protein Pro2281; SEC63, 100.0 1.6E-55 5.6E-60 513.0 35.9 315 1170-1490 13-332 (339)
11 3im1_A Protein SNU246, PRE-mRN 100.0 1.5E-48 5.3E-53 452.7 31.2 306 336-650 6-326 (328)
12 2q0z_X Protein Pro2281; SEC63, 100.0 2E-48 6.9E-53 453.3 30.6 307 337-652 11-330 (339)
13 3l9o_A ATP-dependent RNA helic 100.0 4.5E-41 1.5E-45 447.3 30.2 387 684-1094 181-623 (1108)
14 2xgj_A ATP-dependent RNA helic 100.0 2.9E-40 9.9E-45 435.7 37.6 380 682-1093 81-524 (1010)
15 3i5x_A ATP-dependent RNA helic 100.0 8.3E-40 2.8E-44 416.5 32.7 359 675-1079 79-458 (563)
16 2db3_A ATP-dependent RNA helic 100.0 2.7E-39 9.1E-44 395.5 34.5 330 675-1070 63-407 (434)
17 4a4z_A Antiviral helicase SKI2 100.0 8.2E-39 2.8E-43 422.2 34.8 379 683-1091 35-516 (997)
18 3fht_A ATP-dependent RNA helic 100.0 3.2E-38 1.1E-42 386.6 37.7 356 663-1072 20-381 (412)
19 3sqw_A ATP-dependent RNA helic 100.0 3.8E-38 1.3E-42 400.6 35.3 359 675-1079 28-407 (579)
20 3fmp_B ATP-dependent RNA helic 100.0 1.6E-39 5.5E-44 404.8 21.9 359 664-1076 88-452 (479)
21 2xau_A PRE-mRNA-splicing facto 100.0 9.6E-38 3.3E-42 402.2 37.4 457 687-1226 92-562 (773)
22 2v1x_A ATP-dependent DNA helic 100.0 2.6E-38 9E-43 396.4 29.7 335 678-1081 34-385 (591)
23 2i4i_A ATP-dependent RNA helic 100.0 4.5E-38 1.6E-42 385.8 30.6 343 675-1078 22-391 (417)
24 3pey_A ATP-dependent RNA helic 100.0 2.7E-37 9.2E-42 376.3 37.3 345 675-1075 12-361 (395)
25 2j0s_A ATP-dependent RNA helic 100.0 2.8E-37 9.5E-42 377.7 34.3 339 675-1078 44-391 (410)
26 3eiq_A Eukaryotic initiation f 100.0 1.3E-37 4.3E-42 381.6 29.6 340 675-1078 47-395 (414)
27 1s2m_A Putative ATP-dependent 100.0 1.4E-36 4.7E-41 370.3 38.6 339 675-1079 28-374 (400)
28 1xti_A Probable ATP-dependent 100.0 1E-36 3.6E-41 370.3 36.9 326 685-1074 27-361 (391)
29 1oyw_A RECQ helicase, ATP-depe 100.0 1.8E-37 6.1E-42 385.8 28.4 328 678-1081 15-354 (523)
30 3fho_A ATP-dependent RNA helic 100.0 3.5E-38 1.2E-42 393.0 21.2 330 685-1070 138-470 (508)
31 1hv8_A Putative ATP-dependent 100.0 2.7E-36 9.2E-41 363.4 31.7 324 685-1078 25-353 (367)
32 2z0m_A 337AA long hypothetical 100.0 2.7E-35 9.2E-40 350.1 31.4 314 684-1078 12-330 (337)
33 1fuu_A Yeast initiation factor 100.0 4.6E-37 1.6E-41 374.0 16.2 339 675-1078 28-374 (394)
34 3oiy_A Reverse gyrase helicase 100.0 3.7E-35 1.3E-39 358.6 30.2 327 679-1080 13-376 (414)
35 4a2p_A RIG-I, retinoic acid in 100.0 1.8E-33 6E-38 359.0 21.8 343 688-1073 7-511 (556)
36 3tbk_A RIG-I helicase domain; 100.0 1.5E-32 5.2E-37 350.5 26.5 345 688-1073 4-510 (555)
37 1gm5_A RECG; helicase, replica 100.0 8E-33 2.7E-37 352.8 22.3 319 684-1071 365-698 (780)
38 2ykg_A Probable ATP-dependent 100.0 2.7E-32 9.4E-37 356.7 26.1 349 684-1073 9-519 (696)
39 4a2q_A RIG-I, retinoic acid in 100.0 6.3E-32 2.1E-36 355.4 29.1 349 683-1072 243-751 (797)
40 1gku_B Reverse gyrase, TOP-RG; 100.0 2.1E-32 7.2E-37 365.1 20.1 280 680-1025 50-348 (1054)
41 4gl2_A Interferon-induced heli 100.0 6.2E-32 2.1E-36 353.5 22.5 339 688-1071 7-520 (699)
42 2eyq_A TRCF, transcription-rep 100.0 1.2E-30 4.1E-35 349.8 34.9 315 679-1070 595-922 (1151)
43 4ddu_A Reverse gyrase; topoiso 100.0 4.3E-31 1.5E-35 351.5 29.6 284 680-1034 71-388 (1104)
44 4a2w_A RIG-I, retinoic acid in 100.0 2.4E-31 8.1E-36 352.5 23.5 347 684-1073 244-752 (936)
45 2jlq_A Serine protease subunit 100.0 3.2E-31 1.1E-35 324.3 23.0 300 685-1069 1-310 (451)
46 1wp9_A ATP-dependent RNA helic 100.0 1.3E-30 4.4E-35 327.4 28.6 326 688-1072 9-477 (494)
47 1tf5_A Preprotein translocase 100.0 5.9E-31 2E-35 326.2 20.2 332 684-1071 80-546 (844)
48 3rc3_A ATP-dependent RNA helic 100.0 5.6E-30 1.9E-34 321.7 28.9 299 703-1087 154-462 (677)
49 2whx_A Serine protease/ntpase/ 100.0 4E-30 1.4E-34 323.0 21.8 298 686-1068 169-476 (618)
50 3o8b_A HCV NS3 protease/helica 100.0 4.2E-30 1.4E-34 317.7 20.3 286 690-1071 219-515 (666)
51 2fsf_A Preprotein translocase 100.0 1.7E-29 5.9E-34 311.8 25.2 329 685-1071 72-584 (853)
52 2oca_A DAR protein, ATP-depend 100.0 3.6E-30 1.2E-34 323.4 19.0 312 687-1066 112-451 (510)
53 2z83_A Helicase/nucleoside tri 100.0 7.1E-30 2.4E-34 312.8 20.0 289 698-1070 15-313 (459)
54 2fwr_A DNA repair protein RAD2 100.0 5E-30 1.7E-34 318.8 18.6 302 688-1071 93-455 (472)
55 1yks_A Genome polyprotein [con 100.0 1.2E-29 4.1E-34 308.6 20.7 276 702-1067 6-296 (440)
56 2wv9_A Flavivirin protease NS2 100.0 5.4E-30 1.9E-34 323.4 16.4 290 688-1067 215-530 (673)
57 1nkt_A Preprotein translocase 100.0 3.2E-28 1.1E-32 300.3 27.4 335 683-1072 107-619 (922)
58 2v6i_A RNA helicase; membrane, 100.0 6.5E-28 2.2E-32 292.9 26.0 280 704-1067 2-288 (431)
59 3h1t_A Type I site-specific re 100.0 3E-28 1E-32 310.8 21.7 323 688-1066 178-555 (590)
60 3dmq_A RNA polymerase-associat 99.9 6.9E-25 2.4E-29 290.8 27.2 329 688-1071 153-616 (968)
61 1z63_A Helicase of the SNF2/RA 99.9 6.4E-24 2.2E-28 265.8 24.7 321 688-1071 37-454 (500)
62 2xgj_A ATP-dependent RNA helic 99.9 4.4E-24 1.5E-28 281.9 22.4 249 4-262 220-529 (1010)
63 2xau_A PRE-mRNA-splicing facto 99.9 1.9E-24 6.4E-29 278.6 17.7 306 6-395 239-562 (773)
64 3ly5_A ATP-dependent RNA helic 99.9 1.9E-24 6.4E-29 244.5 14.5 179 675-863 61-251 (262)
65 3jux_A Protein translocase sub 99.9 2.1E-22 7.1E-27 242.8 27.9 348 685-1096 73-625 (822)
66 3l9o_A ATP-dependent RNA helic 99.9 9.7E-24 3.3E-28 281.1 18.0 273 4-286 318-646 (1108)
67 3fmo_B ATP-dependent RNA helic 99.9 1.2E-22 4E-27 233.9 21.8 185 675-865 99-288 (300)
68 3fe2_A Probable ATP-dependent 99.9 8.6E-23 2.9E-27 228.7 16.0 179 676-865 37-228 (242)
69 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 7.8E-22 2.7E-26 258.1 26.7 351 688-1068 271-707 (1038)
70 3iuy_A Probable ATP-dependent 99.9 2.2E-22 7.5E-27 223.5 17.8 174 678-863 30-217 (228)
71 4a4z_A Antiviral helicase SKI2 99.9 1.2E-22 4.2E-27 268.3 16.9 244 4-257 175-518 (997)
72 3dkp_A Probable ATP-dependent 99.9 4.7E-22 1.6E-26 223.4 16.9 178 675-857 36-222 (245)
73 1vec_A ATP-dependent RNA helic 99.9 1.3E-21 4.4E-26 213.6 19.7 172 676-857 11-189 (206)
74 2oxc_A Probable ATP-dependent 99.9 7.8E-22 2.7E-26 219.0 17.8 163 685-857 43-210 (230)
75 1wrb_A DJVLGB; RNA helicase, D 99.9 1.6E-21 5.6E-26 220.1 18.9 174 685-865 42-230 (253)
76 1t6n_A Probable ATP-dependent 99.9 4.4E-21 1.5E-25 211.7 21.3 182 675-864 21-210 (220)
77 1z3i_X Similar to RAD54-like; 99.9 1.2E-20 4E-25 240.8 27.5 324 688-1071 55-529 (644)
78 1q0u_A Bstdead; DEAD protein, 99.9 1.5E-21 5E-26 215.2 16.3 163 685-857 23-193 (219)
79 1qde_A EIF4A, translation init 99.9 3.3E-21 1.1E-25 213.5 18.9 172 675-857 21-198 (224)
80 3ber_A Probable ATP-dependent 99.9 1.4E-21 4.9E-26 219.0 16.0 171 685-865 62-238 (249)
81 2pl3_A Probable ATP-dependent 99.9 2E-21 6.8E-26 217.0 16.8 171 685-865 44-223 (236)
82 3bor_A Human initiation factor 99.9 2.7E-21 9.3E-26 215.6 17.4 178 675-863 37-223 (237)
83 3mwy_W Chromo domain-containin 99.9 6.1E-21 2.1E-25 249.8 21.9 323 688-1071 236-685 (800)
84 2gxq_A Heat resistant RNA depe 99.9 4E-21 1.4E-25 210.0 16.5 168 685-865 20-196 (207)
85 1c4o_A DNA nucleotide excision 99.9 8.2E-20 2.8E-24 232.2 31.0 118 915-1074 437-554 (664)
86 2ipc_A Preprotein translocase 99.8 1.1E-19 3.7E-24 223.3 25.0 131 683-820 75-214 (997)
87 2d7d_A Uvrabc system protein B 99.8 2.8E-18 9.7E-23 217.9 30.8 118 915-1074 443-560 (661)
88 3i5x_A ATP-dependent RNA helic 99.8 3.1E-19 1.1E-23 226.8 20.1 193 4-243 261-458 (563)
89 1oyw_A RECQ helicase, ATP-depe 99.8 1.8E-18 6.3E-23 214.8 20.4 178 6-245 173-354 (523)
90 2v1x_A ATP-dependent DNA helic 99.8 2E-18 6.9E-23 216.4 19.8 182 6-245 199-385 (591)
91 3sqw_A ATP-dependent RNA helic 99.8 4.5E-18 1.5E-22 215.9 19.4 191 5-242 211-406 (579)
92 2rb4_A ATP-dependent RNA helic 99.8 3.8E-18 1.3E-22 180.1 14.9 122 80-241 33-154 (175)
93 3fht_A ATP-dependent RNA helic 99.8 5.2E-18 1.8E-22 207.1 18.3 182 4-235 197-380 (412)
94 2hjv_A ATP-dependent RNA helic 99.8 5.4E-18 1.8E-22 176.4 14.8 143 44-241 7-149 (163)
95 3eaq_A Heat resistant RNA depe 99.7 7.8E-18 2.7E-22 183.1 15.9 116 79-240 29-144 (212)
96 2db3_A ATP-dependent RNA helic 99.7 9.5E-18 3.2E-22 204.7 17.8 170 5-234 234-407 (434)
97 2i4i_A ATP-dependent RNA helic 99.7 6.5E-18 2.2E-22 206.5 16.3 178 7-240 210-389 (417)
98 2j0s_A ATP-dependent RNA helic 99.7 1.1E-17 3.9E-22 203.7 17.6 181 4-240 207-389 (410)
99 1fuk_A Eukaryotic initiation f 99.7 1.4E-17 4.7E-22 173.8 15.7 116 80-241 29-144 (165)
100 3b6e_A Interferon-induced heli 99.7 4.4E-18 1.5E-22 187.2 12.1 164 686-854 31-216 (216)
101 3pey_A ATP-dependent RNA helic 99.7 1.3E-17 4.6E-22 202.1 16.9 183 4-238 174-360 (395)
102 3llm_A ATP-dependent RNA helic 99.7 1.7E-17 5.8E-22 184.3 16.1 168 688-869 61-231 (235)
103 2rb4_A ATP-dependent RNA helic 99.7 2.2E-17 7.5E-22 174.2 15.9 130 910-1079 27-156 (175)
104 1t5i_A C_terminal domain of A 99.7 6.2E-18 2.1E-22 177.4 10.7 110 80-235 30-139 (172)
105 1s2m_A Putative ATP-dependent 99.7 4.9E-17 1.7E-21 197.4 19.8 180 4-241 191-372 (400)
106 3fmp_B ATP-dependent RNA helic 99.7 6.1E-19 2.1E-23 219.2 2.6 188 4-240 264-452 (479)
107 3crv_A XPD/RAD3 related DNA he 99.7 4.1E-16 1.4E-20 195.5 28.0 342 688-1080 3-542 (551)
108 2hjv_A ATP-dependent RNA helic 99.7 4.2E-17 1.4E-21 169.7 15.2 120 914-1079 32-151 (163)
109 1xti_A Probable ATP-dependent 99.7 4.8E-17 1.6E-21 196.9 18.1 178 4-238 181-361 (391)
110 2vl7_A XPD; helicase, unknown 99.7 1.5E-16 5.1E-21 198.4 22.9 126 685-821 5-188 (540)
111 3eiq_A Eukaryotic initiation f 99.7 9.6E-18 3.3E-22 204.8 11.8 184 3-241 210-394 (414)
112 3eaq_A Heat resistant RNA depe 99.7 4.1E-17 1.4E-21 177.4 15.1 122 911-1078 25-146 (212)
113 1rif_A DAR protein, DNA helica 99.7 5E-17 1.7E-21 186.3 16.4 153 688-858 113-265 (282)
114 3i32_A Heat resistant RNA depe 99.7 4E-17 1.4E-21 185.6 14.7 115 80-240 27-141 (300)
115 2jgn_A DBX, DDX3, ATP-dependen 99.7 3.1E-17 1.1E-21 174.0 12.1 116 79-240 44-159 (185)
116 1fuk_A Eukaryotic initiation f 99.7 4.6E-17 1.6E-21 169.8 12.5 123 910-1078 23-145 (165)
117 3fho_A ATP-dependent RNA helic 99.7 1.4E-17 4.9E-22 207.1 9.0 190 4-245 288-485 (508)
118 1t5i_A C_terminal domain of A 99.7 4E-17 1.4E-21 171.2 10.6 116 911-1072 25-140 (172)
119 1hv8_A Putative ATP-dependent 99.7 9.5E-17 3.2E-21 192.5 15.1 175 4-241 175-352 (367)
120 3rc3_A ATP-dependent RNA helic 99.7 9E-17 3.1E-21 202.0 14.9 184 6-252 270-463 (677)
121 2jgn_A DBX, DDX3, ATP-dependen 99.7 9.1E-17 3.1E-21 170.4 12.1 125 908-1078 37-161 (185)
122 2p6n_A ATP-dependent RNA helic 99.7 1.8E-16 6.3E-21 168.7 13.7 109 80-234 53-161 (191)
123 1fuu_A Yeast initiation factor 99.7 1.1E-17 3.8E-22 202.8 3.2 115 80-240 258-372 (394)
124 3i32_A Heat resistant RNA depe 99.7 2.7E-16 9.3E-21 178.7 13.1 118 915-1078 26-143 (300)
125 2p6n_A ATP-dependent RNA helic 99.7 5E-16 1.7E-20 165.3 13.6 108 917-1070 54-161 (191)
126 2z0m_A 337AA long hypothetical 99.6 4.8E-16 1.6E-20 183.9 13.8 170 4-240 157-328 (337)
127 2yjt_D ATP-dependent RNA helic 99.4 2.2E-17 7.6E-22 173.1 0.0 115 80-240 29-143 (170)
128 2fz4_A DNA repair protein RAD2 99.6 1.5E-15 5.1E-20 168.1 12.9 139 688-859 93-232 (237)
129 2yjt_D ATP-dependent RNA helic 99.4 6.5E-17 2.2E-21 169.5 0.0 116 915-1076 28-143 (170)
130 3oiy_A Reverse gyrase helicase 99.6 5E-15 1.7E-19 180.3 15.4 116 81-244 252-376 (414)
131 1c4o_A DNA nucleotide excision 99.6 1.6E-14 5.6E-19 183.5 18.6 123 72-238 430-554 (664)
132 4a15_A XPD helicase, ATP-depen 99.6 5.1E-14 1.7E-18 177.2 20.6 82 688-771 3-87 (620)
133 1yks_A Genome polyprotein [con 99.6 1.4E-15 4.8E-20 184.8 6.0 106 79-231 175-296 (440)
134 2eyq_A TRCF, transcription-rep 99.5 2.4E-14 8.3E-19 192.3 17.5 174 5-235 749-923 (1151)
135 2d7d_A Uvrabc system protein B 99.5 3.2E-14 1.1E-18 180.7 17.5 122 72-237 436-559 (661)
136 1gm5_A RECG; helicase, replica 99.5 2.8E-15 9.7E-20 191.5 7.5 177 5-233 514-696 (780)
137 3jux_A Protein translocase sub 99.5 8.3E-14 2.8E-18 168.6 15.9 193 8-259 410-624 (822)
138 2whx_A Serine protease/ntpase/ 99.5 8.1E-15 2.8E-19 184.2 7.5 111 79-232 353-476 (618)
139 2jlq_A Serine protease subunit 99.5 7.9E-15 2.7E-19 179.2 6.4 111 80-233 187-310 (451)
140 2z83_A Helicase/nucleoside tri 99.5 5.5E-15 1.9E-19 180.8 4.2 112 80-234 189-313 (459)
141 2wv9_A Flavivirin protease NS2 99.5 2E-14 6.7E-19 181.7 7.6 109 79-231 408-530 (673)
142 2v6i_A RNA helicase; membrane, 99.5 6.3E-14 2.2E-18 169.9 10.7 107 80-231 170-288 (431)
143 4gl2_A Interferon-induced heli 99.5 1.1E-13 3.9E-18 180.5 11.9 112 81-234 400-519 (699)
144 1wp9_A ATP-dependent RNA helic 99.4 1.6E-13 5.6E-18 171.3 12.7 112 80-238 360-479 (494)
145 3tbk_A RIG-I helicase domain; 99.4 2.3E-13 7.7E-18 173.0 13.3 123 80-238 388-511 (555)
146 4a2p_A RIG-I, retinoic acid in 99.4 9.6E-14 3.3E-18 176.4 8.7 124 79-238 388-512 (556)
147 1tf5_A Preprotein translocase 99.4 7.7E-13 2.6E-17 164.9 15.3 167 9-235 369-546 (844)
148 2ykg_A Probable ATP-dependent 99.4 5.4E-13 1.8E-17 174.0 12.0 123 80-238 397-520 (696)
149 4ddu_A Reverse gyrase; topoiso 99.4 1E-12 3.5E-17 175.2 14.4 125 6-192 249-383 (1104)
150 2fsf_A Preprotein translocase 99.4 1.3E-12 4.5E-17 162.2 13.4 193 9-259 378-620 (853)
151 3o8b_A HCV NS3 protease/helica 99.4 8.8E-13 3E-17 163.4 10.7 107 80-235 395-515 (666)
152 4a2q_A RIG-I, retinoic acid in 99.4 1.4E-12 4.7E-17 171.5 13.2 124 79-238 629-753 (797)
153 2oca_A DAR protein, ATP-depend 99.4 1.2E-12 4.1E-17 163.8 11.3 80 144-232 373-453 (510)
154 1gku_B Reverse gyrase, TOP-RG; 99.3 1.9E-13 6.3E-18 182.8 2.5 69 81-192 275-348 (1054)
155 1nkt_A Preprotein translocase 99.3 5.9E-12 2E-16 156.4 14.9 191 9-259 397-654 (922)
156 2fwr_A DNA repair protein RAD2 99.3 8.4E-13 2.9E-17 163.5 5.8 110 79-237 347-457 (472)
157 3h1t_A Type I site-specific re 99.2 2.7E-11 9.2E-16 154.2 15.1 117 79-232 437-556 (590)
158 1z5z_A Helicase of the SNF2/RA 99.2 5.1E-11 1.7E-15 133.8 13.1 118 77-237 108-227 (271)
159 4a2w_A RIG-I, retinoic acid in 99.1 2.5E-11 8.4E-16 161.1 7.9 122 80-237 630-752 (936)
160 1z5z_A Helicase of the SNF2/RA 99.1 1.1E-10 3.8E-15 131.1 10.4 113 916-1071 111-225 (271)
161 3dmq_A RNA polymerase-associat 99.1 2.4E-10 8.3E-15 151.7 14.8 114 79-235 501-616 (968)
162 1z63_A Helicase of the SNF2/RA 99.0 7.5E-10 2.6E-14 138.0 12.5 121 74-237 334-456 (500)
163 1z3i_X Similar to RAD54-like; 98.7 3.7E-08 1.3E-12 125.5 14.6 114 80-237 415-531 (644)
164 3mwy_W Chromo domain-containin 98.7 4.9E-08 1.7E-12 127.7 12.3 115 79-237 570-687 (800)
165 2w00_A HSDR, R.ECOR124I; ATP-b 98.4 8.5E-07 2.9E-11 116.6 13.7 70 155-232 636-707 (1038)
166 1w36_D RECD, exodeoxyribonucle 98.2 1E-05 3.6E-10 101.7 14.7 67 690-757 151-219 (608)
167 4b3f_X DNA-binding protein smu 97.8 7E-05 2.4E-09 95.5 12.5 68 687-756 188-255 (646)
168 2gk6_A Regulator of nonsense t 97.6 0.00018 6E-09 91.1 12.1 70 685-756 177-246 (624)
169 2xzl_A ATP-dependent helicase 97.5 0.0002 6.9E-09 92.3 11.5 70 685-756 357-426 (802)
170 2vl7_A XPD; helicase, unknown 97.5 0.00016 5.5E-09 89.8 10.1 115 73-231 375-519 (540)
171 3upu_A ATP-dependent DNA helic 97.5 0.00015 5.1E-09 88.3 9.6 67 685-752 22-92 (459)
172 2wjy_A Regulator of nonsense t 97.4 0.00031 1.1E-08 90.4 10.8 69 686-756 354-422 (800)
173 3e1s_A Exodeoxyribonuclease V, 97.4 0.00062 2.1E-08 84.5 12.7 62 688-752 189-250 (574)
174 2ipc_A Preprotein translocase 96.9 0.0074 2.5E-07 75.6 15.4 84 9-102 380-464 (997)
175 4a15_A XPD helicase, ATP-depen 96.9 0.0041 1.4E-07 78.1 12.6 176 8-230 376-581 (620)
176 3crv_A XPD/RAD3 related DNA he 96.7 0.011 3.7E-07 73.6 14.9 186 8-241 316-539 (551)
177 2o0j_A Terminase, DNA packagin 96.5 0.024 8.4E-07 65.8 14.7 72 688-760 163-234 (385)
178 3cpe_A Terminase, DNA packagin 95.9 0.04 1.4E-06 69.0 13.7 73 688-761 163-235 (592)
179 2orw_A Thymidine kinase; TMTK, 95.7 0.024 8.2E-07 59.0 8.6 39 704-744 3-41 (184)
180 3lfu_A DNA helicase II; SF1 he 95.5 0.019 6.3E-07 73.5 8.6 108 687-818 8-118 (647)
181 3ec2_A DNA replication protein 95.5 0.051 1.7E-06 56.4 10.3 34 690-723 16-57 (180)
182 1wcn_A Transcription elongatio 95.0 0.023 7.9E-07 47.8 4.7 54 1320-1373 7-62 (70)
183 1wcn_A Transcription elongatio 95.0 0.017 5.8E-07 48.6 3.9 56 488-544 7-64 (70)
184 1uaa_A REP helicase, protein ( 94.8 0.035 1.2E-06 71.0 8.1 90 688-799 2-94 (673)
185 1xx6_A Thymidine kinase; NESG, 94.7 0.055 1.9E-06 56.4 7.7 40 703-744 7-46 (191)
186 2b8t_A Thymidine kinase; deoxy 94.6 0.044 1.5E-06 58.6 6.8 40 703-744 11-50 (223)
187 1pjr_A PCRA; DNA repair, DNA r 94.3 0.068 2.3E-06 68.7 9.0 69 687-758 10-80 (724)
188 2kjq_A DNAA-related protein; s 94.3 0.068 2.3E-06 53.4 6.9 20 703-722 35-54 (149)
189 3u4q_A ATP-dependent helicase/ 94.2 0.07 2.4E-06 72.8 9.0 122 688-818 10-137 (1232)
190 2a1j_A DNA repair endonuclease 94.0 0.058 2E-06 44.5 4.6 54 1319-1373 3-57 (63)
191 2a1j_A DNA repair endonuclease 93.9 0.071 2.4E-06 43.9 5.1 52 488-541 4-56 (63)
192 2j9r_A Thymidine kinase; TK1, 93.6 0.14 4.9E-06 53.7 7.9 41 703-745 27-67 (214)
193 3te6_A Regulatory protein SIR3 93.5 0.2 6.7E-06 56.6 9.7 127 703-859 44-177 (318)
194 3vkw_A Replicase large subunit 93.5 0.083 2.8E-06 62.1 6.6 87 703-820 160-246 (446)
195 3e2i_A Thymidine kinase; Zn-bi 93.4 0.33 1.1E-05 50.8 10.2 41 703-745 27-67 (219)
196 1z00_B DNA repair endonuclease 93.3 0.097 3.3E-06 45.8 5.1 52 488-541 18-70 (84)
197 1z00_B DNA repair endonuclease 93.1 0.078 2.7E-06 46.4 4.3 53 1320-1373 18-71 (84)
198 2orv_A Thymidine kinase; TP4A 93.0 0.17 5.8E-06 53.6 7.5 41 703-745 18-58 (234)
199 2chg_A Replication factor C sm 93.0 0.46 1.6E-05 50.6 11.5 19 705-723 39-57 (226)
200 2dr3_A UPF0273 protein PH0284; 93.0 0.27 9.4E-06 53.6 9.8 40 702-743 21-60 (247)
201 3bos_A Putative DNA replicatio 92.8 0.44 1.5E-05 51.6 11.1 21 703-723 51-71 (242)
202 1w4r_A Thymidine kinase; type 92.7 0.21 7E-06 51.6 7.4 39 703-743 19-57 (195)
203 3dm5_A SRP54, signal recogniti 92.7 0.25 8.5E-06 58.3 9.1 123 704-856 100-225 (443)
204 3kl4_A SRP54, signal recogniti 92.7 0.25 8.7E-06 58.2 9.2 51 704-756 97-149 (433)
205 1l8q_A Chromosomal replication 92.6 0.33 1.1E-05 55.6 10.1 37 704-742 37-73 (324)
206 3i4u_A ATP-dependent RNA helic 92.5 0.1 3.5E-06 57.5 5.3 75 1147-1226 17-91 (270)
207 2z4s_A Chromosomal replication 92.4 0.32 1.1E-05 58.2 9.9 40 704-743 130-169 (440)
208 4a1f_A DNAB helicase, replicat 92.4 0.13 4.5E-06 58.6 6.2 143 702-854 44-205 (338)
209 1a5t_A Delta prime, HOLB; zinc 92.4 0.57 2E-05 53.8 11.8 37 689-725 3-45 (334)
210 2w0m_A SSO2452; RECA, SSPF, un 92.4 0.51 1.7E-05 50.9 10.8 38 703-742 22-59 (235)
211 2r6a_A DNAB helicase, replicat 92.3 0.21 7.2E-06 60.2 8.1 141 703-853 202-362 (454)
212 2q6t_A DNAB replication FORK h 91.7 0.28 9.4E-06 59.0 8.2 141 703-853 199-361 (444)
213 2zpa_A Uncharacterized protein 91.6 0.17 5.7E-06 62.6 6.1 116 688-858 175-291 (671)
214 3syl_A Protein CBBX; photosynt 91.5 0.42 1.4E-05 54.2 9.2 19 704-722 67-85 (309)
215 2p65_A Hypothetical protein PF 91.5 1.1 3.7E-05 46.0 11.7 21 704-724 43-63 (187)
216 2qby_B CDC6 homolog 3, cell di 91.4 0.27 9.2E-06 57.9 7.7 20 704-723 45-64 (384)
217 1sxj_A Activator 1 95 kDa subu 91.3 0.44 1.5E-05 58.5 9.5 34 704-742 77-110 (516)
218 3vfd_A Spastin; ATPase, microt 91.3 0.27 9.2E-06 58.0 7.4 21 703-723 147-167 (389)
219 3bh0_A DNAB-like replicative h 90.9 1 3.5E-05 51.1 11.6 142 702-854 66-230 (315)
220 1njg_A DNA polymerase III subu 90.9 1.1 3.7E-05 48.4 11.5 19 705-723 46-64 (250)
221 2v1u_A Cell division control p 90.9 0.55 1.9E-05 55.1 9.7 21 703-723 43-63 (387)
222 3i4u_A ATP-dependent RNA helic 90.3 0.19 6.6E-06 55.3 4.5 76 314-396 17-92 (270)
223 3eie_A Vacuolar protein sortin 90.2 0.37 1.3E-05 55.1 7.1 19 704-722 51-69 (322)
224 1iqp_A RFCS; clamp loader, ext 90.1 0.84 2.9E-05 52.1 10.0 18 706-723 48-65 (327)
225 3bgw_A DNAB-like replicative h 89.7 0.32 1.1E-05 58.1 6.2 142 702-854 195-359 (444)
226 3h4m_A Proteasome-activating n 89.7 0.48 1.6E-05 53.1 7.4 20 703-722 50-69 (285)
227 3d8b_A Fidgetin-like protein 1 89.7 0.29 1E-05 56.9 5.7 21 703-723 116-136 (357)
228 2cvh_A DNA repair and recombin 89.6 0.8 2.7E-05 48.8 8.8 35 703-742 19-53 (220)
229 1fnn_A CDC6P, cell division co 89.5 0.69 2.4E-05 54.4 9.0 35 706-741 46-80 (389)
230 1d2n_A N-ethylmaleimide-sensit 89.5 1 3.6E-05 49.8 9.9 20 704-723 64-83 (272)
231 4b4t_J 26S protease regulatory 89.0 0.79 2.7E-05 53.2 8.5 20 703-722 181-200 (405)
232 2qby_A CDC6 homolog 1, cell di 88.7 1.2 4.2E-05 52.1 10.3 37 704-741 45-83 (386)
233 1xp8_A RECA protein, recombina 88.6 0.5 1.7E-05 54.7 6.5 41 703-745 73-113 (366)
234 2qz4_A Paraplegin; AAA+, SPG7, 88.4 1.4 4.8E-05 48.4 9.9 20 703-722 38-57 (262)
235 1n0w_A DNA repair protein RAD5 88.3 0.64 2.2E-05 50.5 7.0 42 702-743 22-67 (243)
236 1xwi_A SKD1 protein; VPS4B, AA 88.0 0.48 1.7E-05 54.0 5.9 19 704-722 45-63 (322)
237 1sxj_B Activator 1 37 kDa subu 88.0 0.74 2.5E-05 52.5 7.6 18 706-723 44-61 (323)
238 1u94_A RECA protein, recombina 87.9 0.48 1.6E-05 54.6 5.8 40 703-744 62-101 (356)
239 3u61_B DNA polymerase accessor 87.7 2.1 7.3E-05 48.7 11.2 18 706-723 50-67 (324)
240 2zts_A Putative uncharacterize 87.4 0.44 1.5E-05 52.0 4.9 40 703-743 29-68 (251)
241 3hu3_A Transitional endoplasmi 87.3 0.86 2.9E-05 55.1 7.7 20 703-722 237-256 (489)
242 2zr9_A Protein RECA, recombina 87.3 0.83 2.8E-05 52.6 7.3 39 703-743 60-98 (349)
243 2chq_A Replication factor C sm 87.2 0.47 1.6E-05 54.1 5.2 18 706-723 40-57 (319)
244 2qp9_X Vacuolar protein sortin 87.2 0.87 3E-05 52.7 7.5 19 704-722 84-102 (355)
245 4b4t_L 26S protease subunit RP 86.7 0.79 2.7E-05 54.1 6.7 20 703-722 214-233 (437)
246 1sxj_C Activator 1 40 kDa subu 86.6 1.4 4.9E-05 50.5 9.0 28 696-723 36-65 (340)
247 2px0_A Flagellar biosynthesis 86.5 2.4 8.2E-05 47.4 10.4 51 703-754 104-156 (296)
248 1u9l_A Transcription elongatio 86.3 0.33 1.1E-05 40.7 2.3 51 1322-1372 8-60 (70)
249 1vma_A Cell division protein F 86.3 2.1 7.3E-05 48.0 9.7 52 703-756 103-156 (306)
250 1b22_A DNA repair protein RAD5 86.2 0.25 8.4E-06 46.0 1.6 55 1320-1374 23-81 (114)
251 2gno_A DNA polymerase III, gam 85.9 3.1 0.00011 46.7 11.0 42 804-852 78-119 (305)
252 1nlf_A Regulatory protein REPA 85.7 3.6 0.00012 45.6 11.4 42 702-744 28-78 (279)
253 3hr8_A Protein RECA; alpha and 85.6 0.93 3.2E-05 52.0 6.4 42 703-746 60-101 (356)
254 4b4t_K 26S protease regulatory 85.4 1 3.4E-05 53.0 6.7 19 704-722 206-224 (428)
255 1jr3_A DNA polymerase III subu 85.2 3.2 0.00011 48.3 11.2 24 706-730 40-63 (373)
256 1sxj_E Activator 1 40 kDa subu 85.1 4.9 0.00017 46.2 12.7 43 806-855 132-174 (354)
257 3pvs_A Replication-associated 85.1 1.9 6.5E-05 51.4 9.1 18 705-722 51-68 (447)
258 3cmu_A Protein RECA, recombina 84.5 0.69 2.4E-05 64.3 5.4 50 697-748 1415-1469(2050)
259 3pfi_A Holliday junction ATP-d 84.3 1.1 3.8E-05 51.5 6.5 19 705-723 56-74 (338)
260 4b4t_I 26S protease regulatory 84.2 1.7 5.8E-05 50.6 7.8 19 704-722 216-234 (437)
261 3n70_A Transport activator; si 83.7 0.68 2.3E-05 45.7 3.7 22 701-722 21-42 (145)
262 2ce7_A Cell division protein F 82.8 1.7 5.9E-05 52.0 7.4 19 704-722 49-67 (476)
263 2kz3_A Putative uncharacterize 82.6 1.8 6.2E-05 37.5 5.4 55 492-547 8-68 (83)
264 1kft_A UVRC, excinuclease ABC 82.6 0.9 3.1E-05 39.2 3.6 53 1319-1372 23-77 (78)
265 3hgt_A HDA1 complex subunit 3; 82.5 5.4 0.00019 44.5 10.6 93 166-268 168-269 (328)
266 2kz3_A Putative uncharacterize 82.5 1.9 6.4E-05 37.5 5.4 53 1324-1376 8-66 (83)
267 1z3e_B DNA-directed RNA polyme 82.4 1.7 5.8E-05 36.7 5.0 54 1320-1374 9-64 (73)
268 2ehv_A Hypothetical protein PH 82.4 0.95 3.2E-05 49.3 4.6 24 702-725 28-51 (251)
269 1w5s_A Origin recognition comp 82.3 2.7 9.2E-05 49.7 9.0 22 703-724 49-72 (412)
270 4b4t_H 26S protease regulatory 82.2 2.2 7.5E-05 50.2 7.7 20 703-722 242-261 (467)
271 3co5_A Putative two-component 82.2 0.69 2.4E-05 45.5 3.0 20 702-721 25-44 (143)
272 2fna_A Conserved hypothetical 81.1 11 0.00039 42.9 13.7 33 690-724 18-50 (357)
273 3hgt_A HDA1 complex subunit 3; 80.5 4 0.00014 45.6 8.7 137 915-1101 123-266 (328)
274 2w58_A DNAI, primosome compone 80.4 2.6 8.9E-05 44.0 7.0 34 705-740 55-88 (202)
275 3k4g_A DNA-directed RNA polyme 80.3 2.3 7.8E-05 37.0 5.1 54 1321-1375 13-68 (86)
276 1q57_A DNA primase/helicase; d 79.6 4.5 0.00015 49.2 9.8 142 703-854 241-403 (503)
277 1p9r_A General secretion pathw 79.2 2.2 7.5E-05 50.2 6.5 50 689-740 151-201 (418)
278 2oap_1 GSPE-2, type II secreti 79.1 1.2 4.1E-05 54.0 4.3 34 688-721 244-277 (511)
279 3gfk_B DNA-directed RNA polyme 78.3 1.9 6.5E-05 36.9 3.9 53 1321-1374 17-71 (79)
280 4dez_A POL IV 1, DNA polymeras 78.1 2.2 7.6E-05 49.2 6.0 58 1319-1376 177-234 (356)
281 1b22_A DNA repair protein RAD5 77.7 1.5 5.1E-05 40.8 3.4 56 488-543 23-81 (114)
282 1u9l_A Transcription elongatio 77.4 1.1 3.8E-05 37.5 2.2 52 490-542 8-61 (70)
283 3bqs_A Uncharacterized protein 76.3 1.8 6.3E-05 38.5 3.5 34 1320-1353 4-37 (93)
284 3cf2_A TER ATPase, transitiona 75.6 2.3 8E-05 54.1 5.6 18 704-721 238-255 (806)
285 3mab_A Uncharacterized protein 75.2 2.3 7.7E-05 37.8 3.8 34 1320-1353 4-37 (93)
286 2v3c_C SRP54, signal recogniti 74.8 6.9 0.00023 46.2 9.1 35 705-741 100-134 (432)
287 2dhr_A FTSH; AAA+ protein, hex 74.4 7.8 0.00027 46.6 9.5 19 704-722 64-82 (499)
288 1vq8_Y 50S ribosomal protein L 74.2 0.64 2.2E-05 49.7 0.0 54 1319-1372 14-69 (241)
289 3io5_A Recombination and repai 74.1 1.8 6.1E-05 48.2 3.5 45 703-748 28-72 (333)
290 2qgz_A Helicase loader, putati 73.7 2.6 8.7E-05 47.6 4.8 36 704-741 152-188 (308)
291 3gqc_A DNA repair protein REV1 73.1 3.5 0.00012 49.5 5.9 56 1320-1375 315-370 (504)
292 1e9r_A Conjugal transfer prote 72.7 2.5 8.6E-05 50.5 4.7 43 703-747 52-94 (437)
293 1jx4_A DNA polymerase IV (fami 72.7 2.9 0.0001 48.1 5.1 64 1310-1376 171-234 (352)
294 2aq4_A DNA repair protein REV1 72.3 4.1 0.00014 48.3 6.3 56 1319-1374 240-298 (434)
295 2a1j_B DNA excision repair pro 71.9 3.7 0.00013 36.6 4.4 52 1320-1372 32-85 (91)
296 3jvv_A Twitching mobility prot 71.5 2.4 8.4E-05 48.7 4.0 37 703-740 122-158 (356)
297 3cmw_A Protein RECA, recombina 71.4 3.2 0.00011 57.1 5.7 40 703-744 731-770 (1706)
298 3bq0_A POL IV, DBH, DNA polyme 71.4 2.8 9.5E-05 48.4 4.5 60 1320-1379 179-238 (354)
299 3osn_A DNA polymerase IOTA; ho 71.0 3.6 0.00012 48.5 5.4 56 1321-1376 235-290 (420)
300 1kft_A UVRC, excinuclease ABC 71.0 2.3 7.8E-05 36.6 2.8 53 488-541 24-77 (78)
301 1ypw_A Transitional endoplasmi 70.8 12 0.00042 48.1 10.8 21 702-722 236-256 (806)
302 3cf2_A TER ATPase, transitiona 70.4 4.9 0.00017 51.2 6.7 19 704-722 511-529 (806)
303 4f4y_A POL IV, DNA polymerase 70.0 2.5 8.6E-05 48.8 3.7 58 1319-1376 178-235 (362)
304 1z00_A DNA excision repair pro 69.4 3.8 0.00013 36.3 4.0 53 1320-1373 19-73 (89)
305 3a8t_A Adenylate isopentenyltr 68.6 2.3 8E-05 48.0 2.9 19 704-722 40-58 (339)
306 1ls1_A Signal recognition part 68.5 6.7 0.00023 43.7 6.7 48 704-753 98-147 (295)
307 4ag6_A VIRB4 ATPase, type IV s 68.3 4.1 0.00014 47.8 5.1 41 703-745 34-74 (392)
308 2gza_A Type IV secretion syste 68.0 4 0.00014 47.1 4.9 24 698-721 169-192 (361)
309 2bjv_A PSP operon transcriptio 67.8 3 0.0001 45.8 3.7 22 701-722 26-47 (265)
310 1kgd_A CASK, peripheral plasma 67.8 2.8 9.6E-05 42.9 3.2 20 703-722 4-23 (180)
311 2ewv_A Twitching motility prot 67.8 3.1 0.00011 48.2 3.9 38 702-740 134-171 (372)
312 3mab_A Uncharacterized protein 67.7 4.6 0.00016 35.9 4.0 37 487-524 3-40 (93)
313 3tau_A Guanylate kinase, GMP k 67.1 2.9 0.0001 44.0 3.2 21 702-722 6-26 (208)
314 2qmh_A HPR kinase/phosphorylas 66.9 3 0.0001 43.1 3.0 20 703-722 33-52 (205)
315 2eyu_A Twitching motility prot 66.6 2.7 9.3E-05 46.0 2.9 21 701-721 22-42 (261)
316 2i1q_A DNA repair and recombin 66.4 3.9 0.00013 46.4 4.4 49 1321-1369 4-54 (322)
317 1coo_A RNA polymerase alpha su 66.4 4.1 0.00014 36.4 3.4 53 1321-1374 25-79 (98)
318 3bqs_A Uncharacterized protein 66.4 4.3 0.00015 36.1 3.6 37 487-524 3-40 (93)
319 3trf_A Shikimate kinase, SK; a 66.0 2.5 8.6E-05 43.4 2.4 21 704-724 5-25 (185)
320 3vaa_A Shikimate kinase, SK; s 66.0 2.6 8.8E-05 44.0 2.5 22 703-724 24-45 (199)
321 2i1q_A DNA repair and recombin 65.9 4.1 0.00014 46.3 4.4 52 489-541 4-57 (322)
322 2nrt_A Uvrabc system protein C 65.2 4.3 0.00015 42.4 3.9 51 1320-1371 168-219 (220)
323 1jbk_A CLPB protein; beta barr 64.9 5.5 0.00019 40.7 4.9 19 704-722 43-61 (195)
324 4dez_A POL IV 1, DNA polymeras 64.2 7 0.00024 45.0 5.9 59 488-548 178-237 (356)
325 3exa_A TRNA delta(2)-isopenten 64.2 3.2 0.00011 46.3 2.8 19 704-722 3-21 (322)
326 2pt7_A CAG-ALFA; ATPase, prote 63.9 4.2 0.00014 46.3 3.9 23 698-720 165-187 (330)
327 1qhx_A CPT, protein (chloramph 63.6 3 0.0001 42.5 2.4 20 704-723 3-22 (178)
328 3foz_A TRNA delta(2)-isopenten 63.6 3.3 0.00011 46.1 2.8 18 705-722 11-28 (316)
329 1x2i_A HEF helicase/nuclease; 63.0 5.1 0.00018 33.9 3.4 51 1321-1372 15-67 (75)
330 1ojl_A Transcriptional regulat 62.9 4.1 0.00014 45.8 3.6 21 702-722 23-43 (304)
331 3b85_A Phosphate starvation-in 62.7 7 0.00024 41.0 5.1 32 690-722 9-40 (208)
332 1vq8_Y 50S ribosomal protein L 62.4 1.6 5.5E-05 46.6 0.0 54 487-541 14-69 (241)
333 3ney_A 55 kDa erythrocyte memb 62.3 4.3 0.00015 42.1 3.2 20 703-722 18-37 (197)
334 2ffh_A Protein (FFH); SRP54, s 62.2 56 0.0019 38.1 13.2 50 704-755 98-149 (425)
335 1lvg_A Guanylate kinase, GMP k 62.2 3.8 0.00013 42.7 2.9 20 703-722 3-22 (198)
336 2ze6_A Isopentenyl transferase 61.8 3 0.0001 45.5 2.1 17 706-722 3-19 (253)
337 1s5l_U Photosystem II 12 kDa e 61.7 5.9 0.0002 37.3 3.7 32 1320-1351 63-95 (134)
338 1v5w_A DMC1, meiotic recombina 61.6 5.9 0.0002 45.4 4.6 50 489-538 26-78 (343)
339 3lw7_A Adenylate kinase relate 61.6 3.1 0.00011 42.1 2.1 19 706-724 3-21 (179)
340 1zp6_A Hypothetical protein AT 61.5 3 0.0001 43.1 1.9 21 702-722 7-27 (191)
341 1kag_A SKI, shikimate kinase I 61.2 3.6 0.00012 41.6 2.5 20 703-722 3-22 (173)
342 1z00_A DNA excision repair pro 61.2 7.3 0.00025 34.4 4.2 54 488-542 19-73 (89)
343 1pzn_A RAD51, DNA repair and r 60.7 7.4 0.00025 44.6 5.2 39 1320-1358 35-73 (349)
344 2nrt_A Uvrabc system protein C 60.6 6.9 0.00024 40.8 4.4 51 488-540 168-219 (220)
345 2qor_A Guanylate kinase; phosp 60.3 4.7 0.00016 42.2 3.2 22 702-723 10-31 (204)
346 2a1j_B DNA excision repair pro 60.1 7.7 0.00026 34.4 4.1 53 488-541 32-85 (91)
347 1g5t_A COB(I)alamin adenosyltr 59.8 7.8 0.00027 39.9 4.6 40 703-744 27-66 (196)
348 3tr0_A Guanylate kinase, GMP k 59.8 4.8 0.00016 42.0 3.2 20 703-722 6-25 (205)
349 3cmw_A Protein RECA, recombina 59.7 12 0.0004 51.7 7.6 88 704-820 1431-1521(1706)
350 1ex7_A Guanylate kinase; subst 59.5 4 0.00014 42.0 2.4 17 705-721 2-18 (186)
351 1y63_A LMAJ004144AAA protein; 59.4 4.1 0.00014 41.8 2.5 21 703-723 9-29 (184)
352 3iij_A Coilin-interacting nucl 59.3 4.1 0.00014 41.5 2.5 21 703-723 10-30 (180)
353 1pzn_A RAD51, DNA repair and r 58.8 8.5 0.00029 44.1 5.3 53 488-541 35-89 (349)
354 4gp7_A Metallophosphoesterase; 58.7 3.8 0.00013 41.5 2.1 22 702-723 7-28 (171)
355 1w36_B RECB, exodeoxyribonucle 57.9 12 0.00042 50.6 7.4 56 706-761 18-83 (1180)
356 3a00_A Guanylate kinase, GMP k 57.8 5.3 0.00018 41.0 3.1 18 705-722 2-19 (186)
357 2xxa_A Signal recognition part 57.8 38 0.0013 39.8 10.8 49 705-754 101-151 (433)
358 3crm_A TRNA delta(2)-isopenten 57.7 4.7 0.00016 45.3 2.8 18 705-722 6-23 (323)
359 3b9q_A Chloroplast SRP recepto 57.6 11 0.00038 42.1 5.9 51 703-755 99-151 (302)
360 2j41_A Guanylate kinase; GMP, 57.4 5.6 0.00019 41.5 3.2 20 703-722 5-24 (207)
361 2r8r_A Sensor protein; KDPD, P 57.3 8.6 0.0003 40.6 4.5 26 706-731 8-33 (228)
362 3d3q_A TRNA delta(2)-isopenten 56.9 5 0.00017 45.4 2.8 18 705-722 8-25 (340)
363 1kht_A Adenylate kinase; phosp 56.8 4.5 0.00015 41.6 2.4 20 704-723 3-22 (192)
364 3kb2_A SPBC2 prophage-derived 56.7 4.4 0.00015 40.8 2.2 18 706-723 3-20 (173)
365 1rj9_A FTSY, signal recognitio 56.4 8.5 0.00029 43.0 4.7 37 703-741 101-137 (304)
366 3cf0_A Transitional endoplasmi 56.3 4.7 0.00016 45.2 2.5 20 703-722 48-67 (301)
367 1z3e_B DNA-directed RNA polyme 56.3 14 0.00046 31.2 4.6 54 488-543 9-64 (73)
368 4eun_A Thermoresistant glucoki 56.3 4.8 0.00017 41.9 2.5 21 703-723 28-48 (200)
369 3osn_A DNA polymerase IOTA; ho 56.3 10 0.00035 44.6 5.5 58 489-548 235-293 (420)
370 3b9p_A CG5977-PA, isoform A; A 56.0 4.8 0.00016 45.0 2.5 20 703-722 53-72 (297)
371 1jx4_A DNA polymerase IV (fami 55.9 11 0.00038 43.1 5.7 60 488-549 178-238 (352)
372 1cr0_A DNA primase/helicase; R 55.8 9 0.00031 42.7 4.8 40 702-742 33-72 (296)
373 3arc_U Photosystem II 12 kDa e 55.8 5 0.00017 36.0 2.0 32 1320-1351 26-58 (97)
374 3hws_A ATP-dependent CLP prote 55.6 4.8 0.00016 46.6 2.5 21 703-723 50-70 (363)
375 1ly1_A Polynucleotide kinase; 55.4 4.6 0.00016 41.0 2.1 19 705-723 3-21 (181)
376 1in4_A RUVB, holliday junction 55.4 6.2 0.00021 45.0 3.4 18 705-722 52-69 (334)
377 2c95_A Adenylate kinase 1; tra 55.3 5.7 0.00019 41.0 2.8 22 702-723 7-28 (196)
378 3cm0_A Adenylate kinase; ATP-b 55.1 4 0.00014 41.8 1.6 21 703-723 3-23 (186)
379 1im4_A DBH; DNA polymerase PAL 55.1 4.8 0.00017 42.6 2.2 38 1319-1356 183-220 (221)
380 1knq_A Gluconate kinase; ALFA/ 54.6 4.9 0.00017 40.7 2.1 21 703-723 7-27 (175)
381 1s96_A Guanylate kinase, GMP k 54.5 5.4 0.00018 42.3 2.5 21 702-722 14-34 (219)
382 2yvu_A Probable adenylyl-sulfa 54.5 10 0.00034 38.8 4.6 36 703-740 12-47 (186)
383 3bq0_A POL IV, DBH, DNA polyme 54.5 11 0.00037 43.3 5.2 59 488-549 179-239 (354)
384 1lv7_A FTSH; alpha/beta domain 54.1 5.2 0.00018 43.6 2.4 19 704-722 45-63 (257)
385 4b4t_M 26S protease regulatory 53.9 10 0.00034 44.6 4.9 19 704-722 215-233 (434)
386 1ofh_A ATP-dependent HSL prote 53.8 5.5 0.00019 44.7 2.6 20 703-722 49-68 (310)
387 1x2i_A HEF helicase/nuclease; 53.8 8.2 0.00028 32.6 3.1 52 489-541 15-67 (75)
388 3gqc_A DNA repair protein REV1 53.8 13 0.00044 44.6 5.8 59 488-548 315-374 (504)
389 1z6g_A Guanylate kinase; struc 53.6 7.1 0.00024 41.3 3.2 21 702-722 21-41 (218)
390 3uie_A Adenylyl-sulfate kinase 53.5 5.3 0.00018 41.6 2.2 33 689-723 12-44 (200)
391 3nbx_X ATPase RAVA; AAA+ ATPas 53.4 6 0.00021 47.6 2.9 20 703-722 40-59 (500)
392 4f4y_A POL IV, DNA polymerase 52.8 7.7 0.00026 44.6 3.6 59 488-548 179-238 (362)
393 3t15_A Ribulose bisphosphate c 52.8 8.9 0.00031 42.7 4.1 20 704-723 36-55 (293)
394 2aq4_A DNA repair protein REV1 52.6 18 0.0006 42.8 6.8 59 488-548 241-303 (434)
395 2rhm_A Putative kinase; P-loop 52.5 5.2 0.00018 41.2 1.9 21 703-723 4-24 (193)
396 3hjh_A Transcription-repair-co 52.5 14 0.00046 44.3 5.8 51 703-758 13-63 (483)
397 1zuh_A Shikimate kinase; alpha 52.5 5.8 0.0002 39.9 2.2 20 705-724 8-27 (168)
398 2ius_A DNA translocase FTSK; n 52.3 12 0.00039 45.1 5.1 28 703-730 166-193 (512)
399 2v54_A DTMP kinase, thymidylat 52.3 6.2 0.00021 41.1 2.5 21 703-723 3-23 (204)
400 1gvn_B Zeta; postsegregational 52.2 5.8 0.0002 44.1 2.4 20 704-723 33-52 (287)
401 3c8u_A Fructokinase; YP_612366 52.1 6 0.00021 41.5 2.4 19 703-721 21-39 (208)
402 3eph_A TRNA isopentenyltransfe 51.9 7 0.00024 45.2 3.0 18 705-722 3-20 (409)
403 2j37_W Signal recognition part 51.9 49 0.0017 39.7 10.5 48 705-754 102-151 (504)
404 1tue_A Replication protein E1; 51.8 6.9 0.00024 40.6 2.6 23 705-728 59-81 (212)
405 1c9k_A COBU, adenosylcobinamid 51.5 6.2 0.00021 40.1 2.2 42 707-754 2-43 (180)
406 4ecq_A DNA polymerase ETA; tra 51.4 8.8 0.0003 45.4 3.9 57 1320-1376 253-310 (435)
407 2bdt_A BH3686; alpha-beta prot 50.7 5.1 0.00018 41.2 1.5 19 705-723 3-21 (189)
408 3e70_C DPA, signal recognition 50.6 19 0.00064 40.7 6.3 53 703-757 128-182 (328)
409 1znw_A Guanylate kinase, GMP k 50.5 6.9 0.00024 41.0 2.5 20 702-721 18-37 (207)
410 3t61_A Gluconokinase; PSI-biol 50.4 6.5 0.00022 41.0 2.3 20 704-723 18-37 (202)
411 2r44_A Uncharacterized protein 50.3 6.3 0.00021 44.9 2.3 20 703-722 45-64 (331)
412 1aky_A Adenylate kinase; ATP:A 50.2 6.9 0.00024 41.4 2.5 22 703-724 3-24 (220)
413 1um8_A ATP-dependent CLP prote 50.1 6.6 0.00023 45.6 2.5 20 703-722 71-90 (376)
414 1zu4_A FTSY; GTPase, signal re 49.8 12 0.00042 42.1 4.6 36 703-740 104-139 (320)
415 3umf_A Adenylate kinase; rossm 49.6 7.6 0.00026 41.0 2.6 22 703-724 28-49 (217)
416 2og2_A Putative signal recogni 49.6 23 0.00078 40.5 6.8 51 703-755 156-208 (359)
417 1via_A Shikimate kinase; struc 49.6 6.8 0.00023 39.6 2.2 19 706-724 6-24 (175)
418 1ci4_A Protein (barrier-TO-aut 49.4 29 0.00098 30.1 5.5 55 486-541 16-82 (89)
419 3lnc_A Guanylate kinase, GMP k 49.4 6.8 0.00023 41.8 2.3 21 702-722 25-45 (231)
420 1tev_A UMP-CMP kinase; ploop, 49.3 6.4 0.00022 40.5 2.0 20 704-723 3-22 (196)
421 1hqc_A RUVB; extended AAA-ATPa 49.1 6.8 0.00023 44.3 2.4 20 703-722 37-56 (324)
422 3ice_A Transcription terminati 49.1 64 0.0022 37.0 10.1 30 694-723 162-193 (422)
423 1zd8_A GTP:AMP phosphotransfer 49.0 6.7 0.00023 41.8 2.2 21 703-723 6-26 (227)
424 2iyv_A Shikimate kinase, SK; t 48.9 7.4 0.00025 39.7 2.4 19 705-723 3-21 (184)
425 3uk6_A RUVB-like 2; hexameric 48.9 7.7 0.00026 44.8 2.8 26 704-730 70-95 (368)
426 3fb4_A Adenylate kinase; psych 48.7 6.8 0.00023 41.3 2.1 18 706-723 2-19 (216)
427 2bwj_A Adenylate kinase 5; pho 48.6 6.7 0.00023 40.6 2.0 21 703-723 11-31 (199)
428 3ber_A Probable ATP-dependent 48.3 67 0.0023 34.4 10.2 78 914-1025 108-192 (249)
429 2cdn_A Adenylate kinase; phosp 48.1 8 0.00027 40.2 2.6 20 704-723 20-39 (201)
430 4fcw_A Chaperone protein CLPB; 47.9 12 0.0004 42.0 4.1 19 705-723 48-66 (311)
431 1e6c_A Shikimate kinase; phosp 47.8 7.6 0.00026 39.1 2.3 19 705-723 3-21 (173)
432 3asz_A Uridine kinase; cytidin 47.5 6.8 0.00023 41.1 1.9 20 703-722 5-24 (211)
433 3sr0_A Adenylate kinase; phosp 47.5 9.4 0.00032 39.9 2.9 20 706-725 2-21 (206)
434 2pez_A Bifunctional 3'-phospho 47.4 7.4 0.00025 39.5 2.1 20 703-722 4-23 (179)
435 3k4g_A DNA-directed RNA polyme 47.4 25 0.00085 30.6 5.0 54 488-543 12-67 (86)
436 1g8p_A Magnesium-chelatase 38 47.4 7.8 0.00027 44.4 2.6 20 703-722 44-63 (350)
437 1ixz_A ATP-dependent metallopr 47.2 7.9 0.00027 42.0 2.4 19 704-722 49-67 (254)
438 1t94_A Polymerase (DNA directe 47.1 22 0.00075 42.4 6.4 60 1319-1379 281-340 (459)
439 1sxj_D Activator 1 41 kDa subu 46.8 10 0.00035 43.4 3.5 18 705-722 59-76 (353)
440 3c65_A Uvrabc system protein C 46.7 4.1 0.00014 42.8 0.0 53 487-541 172-225 (226)
441 1f2t_A RAD50 ABC-ATPase; DNA d 46.5 10 0.00036 37.2 3.0 18 705-722 24-41 (149)
442 1zak_A Adenylate kinase; ATP:A 46.4 8 0.00027 40.9 2.3 21 704-724 5-25 (222)
443 3dl0_A Adenylate kinase; phosp 46.4 9.4 0.00032 40.1 2.8 18 706-723 2-19 (216)
444 2r62_A Cell division protease 46.2 5.1 0.00017 44.0 0.7 19 704-722 44-62 (268)
445 1ak2_A Adenylate kinase isoenz 46.0 9.5 0.00033 40.7 2.8 22 703-724 15-36 (233)
446 1m7g_A Adenylylsulfate kinase; 45.8 13 0.00044 38.9 3.8 33 689-723 12-44 (211)
447 1ye8_A Protein THEP1, hypothet 45.7 8.5 0.00029 39.2 2.2 16 706-721 2-17 (178)
448 3c65_A Uvrabc system protein C 45.6 4.4 0.00015 42.6 0.0 53 1319-1372 172-225 (226)
449 2pt5_A Shikimate kinase, SK; a 45.6 8.5 0.00029 38.5 2.2 18 706-723 2-19 (168)
450 2c9o_A RUVB-like 1; hexameric 45.5 8.1 0.00028 46.2 2.4 19 704-722 63-81 (456)
451 2vli_A Antibiotic resistance p 45.3 7.9 0.00027 39.4 1.9 20 704-723 5-24 (183)
452 1cke_A CK, MSSA, protein (cyti 45.2 8.7 0.0003 40.7 2.3 20 704-723 5-24 (227)
453 2bbw_A Adenylate kinase 4, AK4 45.1 9.1 0.00031 41.3 2.5 21 703-723 26-46 (246)
454 1nks_A Adenylate kinase; therm 44.9 7.8 0.00027 39.7 1.9 18 706-723 3-20 (194)
455 4e22_A Cytidylate kinase; P-lo 44.7 9.1 0.00031 41.5 2.4 22 702-723 25-46 (252)
456 1u0j_A DNA replication protein 44.6 17 0.00056 39.5 4.3 41 682-722 77-122 (267)
457 1xjc_A MOBB protein homolog; s 44.6 19 0.00064 36.2 4.5 25 705-730 5-29 (169)
458 2plr_A DTMP kinase, probable t 44.3 8.7 0.0003 40.1 2.1 21 703-723 3-23 (213)
459 2qt1_A Nicotinamide riboside k 44.2 10 0.00035 39.5 2.7 20 703-722 20-39 (207)
460 1ukz_A Uridylate kinase; trans 44.0 9.1 0.00031 39.8 2.2 18 705-722 16-33 (203)
461 2fmp_A DNA polymerase beta; nu 44.0 13 0.00046 41.9 3.7 31 1320-1350 98-128 (335)
462 2wwf_A Thymidilate kinase, put 43.9 9.5 0.00033 39.9 2.4 22 703-724 9-30 (212)
463 2jaq_A Deoxyguanosine kinase; 43.7 9.2 0.00032 39.6 2.2 17 706-722 2-18 (205)
464 3tif_A Uncharacterized ABC tra 43.6 10 0.00035 40.6 2.6 19 702-720 29-47 (235)
465 1qf9_A UMP/CMP kinase, protein 43.4 8.7 0.0003 39.4 1.9 19 705-723 7-25 (194)
466 1nn5_A Similar to deoxythymidy 43.3 9.8 0.00033 39.9 2.4 21 703-723 8-28 (215)
467 1e4v_A Adenylate kinase; trans 43.2 8.7 0.0003 40.4 1.9 19 706-724 2-20 (214)
468 4a74_A DNA repair and recombin 43.2 10 0.00035 40.2 2.5 42 702-743 23-68 (231)
469 3a4m_A L-seryl-tRNA(SEC) kinas 43.1 9.2 0.00031 41.7 2.1 20 704-723 4-23 (260)
470 1j8m_F SRP54, signal recogniti 43.1 28 0.00095 38.7 6.1 51 704-756 98-150 (297)
471 3qf7_A RAD50; ABC-ATPase, ATPa 42.9 11 0.00039 43.3 3.0 20 706-725 25-44 (365)
472 3kta_A Chromosome segregation 42.6 12 0.0004 38.1 2.7 17 706-722 28-44 (182)
473 2r2a_A Uncharacterized protein 42.5 13 0.00046 38.5 3.1 22 706-727 7-28 (199)
474 2yhs_A FTSY, cell division pro 42.4 32 0.0011 40.9 6.6 50 703-754 292-343 (503)
475 3nwj_A ATSK2; P loop, shikimat 42.1 13 0.00046 40.1 3.2 20 704-723 48-67 (250)
476 3be4_A Adenylate kinase; malar 42.0 10 0.00034 40.0 2.2 21 704-724 5-25 (217)
477 3cmu_A Protein RECA, recombina 42.0 18 0.0006 50.7 5.0 40 702-743 1079-1118(2050)
478 3pzp_A DNA polymerase kappa; D 42.0 26 0.00091 42.2 6.1 62 1310-1375 331-392 (517)
479 2p5t_B PEZT; postsegregational 41.9 8.2 0.00028 41.9 1.5 20 704-723 32-51 (253)
480 3tlx_A Adenylate kinase 2; str 41.3 13 0.00043 40.1 2.9 22 703-724 28-49 (243)
481 1iy2_A ATP-dependent metallopr 41.2 11 0.00037 41.6 2.4 18 705-722 74-91 (278)
482 2z43_A DNA repair and recombin 41.2 5.6 0.00019 45.1 0.0 39 1320-1358 12-50 (324)
483 2cbz_A Multidrug resistance-as 41.2 11 0.00039 40.3 2.4 19 702-720 29-47 (237)
484 1rz3_A Hypothetical protein rb 40.9 20 0.00069 37.1 4.3 20 703-722 21-40 (201)
485 2if2_A Dephospho-COA kinase; a 40.8 10 0.00035 39.4 2.0 17 706-722 3-19 (204)
486 2xvc_A ESCRT-III, SSO0910; cel 40.8 6 0.0002 30.9 0.1 47 273-333 12-58 (59)
487 2zan_A Vacuolar protein sortin 40.5 11 0.00038 44.8 2.4 20 703-722 166-185 (444)
488 1g41_A Heat shock protein HSLU 40.5 12 0.0004 44.2 2.5 19 704-722 50-68 (444)
489 3gfk_B DNA-directed RNA polyme 40.3 20 0.00069 30.6 3.2 53 488-542 16-70 (79)
490 2v9p_A Replication protein E1; 40.3 16 0.00056 40.6 3.6 37 701-742 123-159 (305)
491 2pbr_A DTMP kinase, thymidylat 40.2 11 0.00039 38.5 2.2 18 706-723 2-19 (195)
492 1jms_A Terminal deoxynucleotid 40.2 21 0.00071 41.1 4.5 29 1320-1348 121-149 (381)
493 2x8a_A Nuclear valosin-contain 40.1 11 0.00037 41.5 2.1 18 705-722 45-62 (274)
494 3pxg_A Negative regulator of g 39.9 23 0.00078 42.4 5.1 21 703-723 200-220 (468)
495 1htw_A HI0065; nucleotide-bind 39.9 12 0.00042 37.2 2.2 20 702-721 31-50 (158)
496 1t6n_A Probable ATP-dependent 39.8 48 0.0016 34.6 7.2 61 81-176 82-142 (220)
497 2z43_A DNA repair and recombin 39.8 6.1 0.00021 44.8 0.0 53 488-541 12-66 (324)
498 2i3b_A HCR-ntpase, human cance 39.6 16 0.00053 37.6 3.1 19 704-722 1-19 (189)
499 2z0h_A DTMP kinase, thymidylat 39.5 12 0.0004 38.6 2.1 18 706-723 2-19 (197)
500 2xb4_A Adenylate kinase; ATP-b 39.4 12 0.0004 39.7 2.2 19 706-724 2-20 (223)
No 1
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.6e-234 Score=2374.19 Aligned_cols=1473 Identities=44% Similarity=0.821 Sum_probs=1399.1
Q ss_pred CCCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 3 STQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.+++++|+||||||+||++++|+||++.++.++++|++++|||||+++++++...........+++.+++.+.+. ..++
T Consensus 240 ~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~ 318 (1724)
T 4f92_B 240 MTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEH-AGKN 318 (1724)
T ss_dssp HHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTC-CSSC
T ss_pred hCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHH-hcCC
Confidence 357789999999999999999999998877788999999999999999999888777777777777777766554 3568
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
|+||||+||++|+.+|+.|.+...+.+....+........+.+..+.....+..|.+++.+|||+|||||++++|..||+
T Consensus 319 ~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~ 398 (1724)
T 4f92_B 319 QVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVED 398 (1724)
T ss_dssp CEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHH
T ss_pred cEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHH
Confidence 99999999999999999999988877777677666666666677777777889999999999999999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCc---ccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGW---RDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~---~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+|++|.++|||||+|||||||+|+++|||+|+++|||..+.+ +..+|+||+|||||+|+|..|.+|+++++++..+|
T Consensus 399 ~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~ 478 (1724)
T 4f92_B 399 LFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYY 478 (1724)
T ss_dssp HHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHH
T ss_pred HHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHH
Confidence 999999999999999999999999999999999999987754 45569999999999999999999999999999999
Q ss_pred HHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHHHH
Q 043190 240 LRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALVTD 319 (1492)
Q Consensus 240 ~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~ 319 (1492)
.++++++.|+||++...+.+++|+||++|++.+.+++++|+++||+|+|+.+||.+||++.++...|+.+..++.++|..
T Consensus 479 ~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~ 558 (1724)
T 4f92_B 479 LSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHT 558 (1724)
T ss_dssp HHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988877889999999999999
Q ss_pred HHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHHHH
Q 043190 320 AARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELET 399 (1492)
Q Consensus 320 ~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~~ 399 (1492)
+++.|.++|||+++++++.+.+|++||+||+|||++.|+..|.+.+++.+++.++|.++|.++||+++++|.+|+.+|++
T Consensus 559 ~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~is~s~ef~~i~~R~~E~~~l~~ 638 (1724)
T 4f92_B 559 AALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSLSSEFKNITVREEEKLELQK 638 (1724)
T ss_dssp HHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGTTCCCCGGGHHHHHH
T ss_pred HHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHHhCChhhccCCcCHHHHHHHHH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCcccccCCCCChhHHHHHHHHHHHcCCCCCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Q 043190 400 LVQTLCPVEVKGGPSNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAV 479 (1492)
Q Consensus 400 l~~~~~~~~~~~~~~~~~~K~~~Llqa~i~~~~~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i 479 (1492)
++++ +|+++++.+..++.|+++|||+||++.++++++|.+|+.+|.++|.||++|++|||..+||+..+.++++|||||
T Consensus 639 l~~~-~~~~~~~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~ei~~~~~~~~~~~~~l~l~k~i 717 (1724)
T 4f92_B 639 LLER-VPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMI 717 (1724)
T ss_dssp HHHH-SSSCCCSCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHhc-CCCCcCCCCCChHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCcccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhcCCchHHHHHHHhccCCceeEEEEEeecccce
Q 043190 480 DRQIWPHQHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPGGRLVKQYLGYFPSIQLSATVSPITRTV 559 (1492)
Q Consensus 480 ~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~~~P~~~i~~~~~~~~~~~ 559 (1492)
++|+|++.+||+||| ++|++.+++|+++|+|+++|.++++.+++++++++++|+.|++.+++||+++++++++|+++++
T Consensus 718 ~~~~w~~~~~L~q~~-~i~~~~~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~g~~i~~~~~~~P~~~~~~~~~p~~~~~ 796 (1724)
T 4f92_B 718 DKRMWQSMCPLRQFR-KLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRST 796 (1724)
T ss_dssp HHTSCTTSCGGGGST-TSCHHHHHHHHTSSCCGGGGGGCCHHHHHHHHTCSTTHHHHHHHHTTSCCEEEEEEEEESSSSE
T ss_pred HhCCCCCCCceecCC-CCCHHHHHHHHhcCCCHHHHHhCCHHHHHHHHCCchHHHHHHHHHHHCCCceEEEEEEecCCce
Confidence 999999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEecCCcccCCcCCcccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEEEEEeeccCCCCCcceeeeccCccc
Q 043190 560 LKIGLAITPEFTWKDHFHGAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWL 639 (1492)
Q Consensus 560 ~~i~~~~~~~f~~~~~~h~~~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v~~~ip~~~p~p~~~~v~~~Sd~wl 639 (1492)
++|+++++|+|.|+.++||..|.||+||+|.+++.|+|+++|.++++..++ .+.++|++|+.+|+||+|+++++||+|+
T Consensus 797 ~~~~~~~~~~~~w~~~~h~~~~~~~~~v~d~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~p~~~~i~~~sd~w~ 875 (1724)
T 4f92_B 797 LKVELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQD-EHLITFFVPVFEPLPPQYFIRVVSDRWL 875 (1724)
T ss_dssp EEEEEEEEECSCCCTTTTTTEEEEEEEEECTTSCBEEEEEEEEEEGGGTTS-CEEEEEEEECCSSCCSEEEEEEEESSST
T ss_pred EEEEEEEeeccccchhhcCCceeEEEEEEecCCCeEEEEEEEEeeeeccCC-ceEEEEEEECCCCCCCeEEEEEEEcccc
Confidence 999999999999999999999999999999999999999999999998877 8999999999999999999999999999
Q ss_pred ccceeEEecccccccCCCCCCCcccCCCCCccccccCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCc
Q 043190 640 HAEAFYCISFHNLALPQARTSHTELLDLKPLPVTALGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGK 717 (1492)
Q Consensus 640 ~~~~~~~i~~~~~~~p~~~~~~~~l~~l~~~~~~~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGK 717 (1492)
+++...+++|+++.+|.+.+++|+++|++|+|+++|+++.++++| +|++|||+|+++++.++++++|++++|||||||
T Consensus 876 ~~~~~~~~~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGK 955 (1724)
T 4f92_B 876 SCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGK 955 (1724)
T ss_dssp TCEEEEEEECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCC
T ss_pred CCCceeeeccccccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCc
Confidence 999999999999999999999999999999999999999999999 799999999999999998999999999999999
Q ss_pred hHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhh
Q 043190 718 TISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGIS 797 (1492)
Q Consensus 718 T~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~ 797 (1492)
|++|++||++.+...+++++||++|+|+||.|++++|.+.|++.+|.+|+.++|+...+.+...+++|+|||||+|+.++
T Consensus 956 Tliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~ll 1035 (1724)
T 4f92_B 956 TICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILS 1035 (1724)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHH
Confidence 99999999999988778899999999999999999999999887799999999998877666778999999999999999
Q ss_pred hcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCC
Q 043190 798 RNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKP 877 (1492)
Q Consensus 798 ~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~ 877 (1492)
+++.....++++++||+||+|++++++|+.++.++++++.+..+.+.+.|+|+||||++|++++++|+++.....++|.+
T Consensus 1036 r~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~ 1115 (1724)
T 4f92_B 1036 RRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHP 1115 (1724)
T ss_dssp TTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCG
T ss_pred hCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCC
Confidence 99888778999999999999999989999999999999999888888999999999999999999999999989999999
Q ss_pred CccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHH
Q 043190 878 SVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEED 957 (1492)
Q Consensus 878 ~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~ 957 (1492)
.+||++++.++.+++..........+.++.+..+....+++++||||+||+.|+.+|..|...+........+.....++
T Consensus 1116 ~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~ 1195 (1724)
T 4f92_B 1116 NVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKD 1195 (1724)
T ss_dssp GGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHH
T ss_pred CCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHH
Confidence 99999999999988887777777777888888888889999999999999999999999999988888888888888899
Q ss_pred HHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCcc
Q 043190 958 LQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRY 1037 (1492)
Q Consensus 958 ~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~ 1037 (1492)
+......+.+..|.+++..||++|||||++++|..+++.|++|.++|||||+++++|||+|+++|||.++++|+++.+++
T Consensus 1196 l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~ 1275 (1724)
T 4f92_B 1196 LIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAY 1275 (1724)
T ss_dssp HHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEE
T ss_pred HHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHh
Q 043190 1038 VDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLS 1117 (1492)
Q Consensus 1038 ~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~ 1117 (1492)
.+++..+|+||+|||||+|+|..|.|++++.+.+...|++++.++.|+||+|...+.++++++|+.|.+.+.+|+++|++
T Consensus 1276 ~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~ 1355 (1724)
T 4f92_B 1276 VDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLT 1355 (1724)
T ss_dssp EECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHT
T ss_pred CCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hchheeecccCccccCCCCCCcccHHHHHHHHHHHHHHHhHHCCCceecCCc-cccccchhhhhhccccHHHHHHHHhcc
Q 043190 1118 WTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNTFEDLEDSGCVKMTEDT-VEPTMLGTIASQYYLSYVTVSMFGSNI 1196 (1492)
Q Consensus 1118 ~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~l~~L~~~~~i~~~~~~-~~~T~lG~~~s~~~i~~~T~~~f~~~l 1196 (1492)
+||||+|+.+||.||++++.+...++++++++|+++++.|++.|||+.++++ +.||++|++||+|||+|.|++.|..++
T Consensus 1356 ~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l 1435 (1724)
T 4f92_B 1356 WTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSL 1435 (1724)
T ss_dssp TSSHHHHHHHSGGGTTCSCCSHHHHHHHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHC
T ss_pred hhHHHHHHhcCcccccccccchhhHHHHHHHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999987765 999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhcccceeecCCCCCChhHHHHHHHHHHhcCCCCCCcchHhhHHHH
Q 043190 1197 GPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSV 1276 (1492)
Q Consensus 1197 ~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~l~r~~l~~~~l~~D~~~i 1276 (1492)
++..++.++|++||.|+||.++|+|++|+..+++|++.+|++.+...+++|+.|+++||||||+|+++| .+|.+|+..|
T Consensus 1436 ~~~~~~~~~L~il~~a~ef~~i~~R~~E~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~~~r~~l~-~~~~~D~~~i 1514 (1724)
T 4f92_B 1436 NAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLS-AELQSDTEEI 1514 (1724)
T ss_dssp CTTCCHHHHHHHHHTSGGGTTCCCCTTHHHHHHHHHHHSSSCCSSCCTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHH
T ss_pred cccCCHHHHHHHhcCCcccccccccccHHHHHHHHHhhCCCCCCccccCCHHHHHHHHHHHHHCCCcCC-hHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888889999999999999999999999 8999999999
Q ss_pred HHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHh
Q 043190 1277 LDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQ 1356 (1492)
Q Consensus 1277 l~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~ 1356 (1492)
++++.||++||+|+|...||+.++.++|+|+|||.||+|++ .++|+|||||++.++++|.++||+|+.||++++++++.
T Consensus 1515 ~~~~~rl~~a~~d~~~~~g~~~~~~~~~~l~q~l~~~~w~~-~~~L~qip~i~~~~ar~l~~~gi~t~~dl~~~~~~~~~ 1593 (1724)
T 4f92_B 1515 LSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSK-DSYLKQLPHFTSEHIKRCTDKGVESVFDIMEMEDEERN 1593 (1724)
T ss_dssp HHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHTTCCTT-SCGGGGSTTCCHHHHHHHHHHTCCSHHHHHSSCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhCCCcC-CcCEecCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred hhhC--CchHHHHHHHhcCCCceEEEEEEEeccC-CCCCeEEEEEEEEeccCCCCCCccccccCCCCccceEEEEEEeCC
Q 043190 1357 TVIG--NFPVSRLHQDLQRFPRIQVKLRLQRRDI-DGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTN 1433 (1492)
Q Consensus 1357 ~~l~--~~~~~~i~~~~~~~P~i~i~~~~~~~~~-~~~~~~~l~v~l~~~~~~~~~~~~~~p~~p~~k~e~w~~~v~d~~ 1433 (1492)
.+++ +.++++|.+++++||++++++++.+.+. ..+..++++|++++.+. ....++||+||+.|.|+||++|||.+
T Consensus 1594 ~ll~~~~~~~~~i~~~~~~~P~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~p~~k~e~w~~vvg~~~ 1671 (1724)
T 4f92_B 1594 ALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREEE--VTGPVIAPLFPQKREEGWWVVIGDAK 1671 (1724)
T ss_dssp TSSCCCHHHHHHHHHHHHHSCCEEEEEEEETSSSCCTTSEEEEEEEEEESSC--CCSCCCCTTSCSCCCCCEEEEEEETT
T ss_pred HHHCCChHHHHHHHHHHHhCCceEEEEEEecCccccCCCeEEEEEEEEecCC--CCCeeecCCCCCCCccCEEEEEEECC
Confidence 9875 5678999999999999999999987665 57888999999999863 44579999999999999999999999
Q ss_pred CCeEEEEEEeecCCcceEE--EEecCCCCCcceEEEEEEeCCCCCccEEEEEEE
Q 043190 1434 TSELYALKRISFSDRLNTH--MELPSGITTFQGMKLVVVSDCYLGFEQEHSIEA 1485 (1492)
Q Consensus 1434 ~~~l~~~~r~~~~~~~~~~--~~~p~~~~~~~~~~v~~~sd~y~G~D~~~~i~~ 1485 (1492)
+|+|+++||+++++...++ |.+|. +|.+++++|+|||+|+|+|||++|.+
T Consensus 1672 ~~~l~~~kr~~~~~~~~~~l~f~~p~--~g~~~~~~~~~~d~y~g~d~~~~~~~ 1723 (1724)
T 4f92_B 1672 SNSLISIKRLTLQQKAKVKLDFVAPA--TGAHNYTLYFMSDAYMGCDQEYKFSV 1723 (1724)
T ss_dssp TTEEEEEEEECCSSEEEEEEEEECCS--SSCEEEEEEEEESSCSSCCEEEEEEE
T ss_pred CCeEEEEEEEecCCCceEEEEEEeCC--CCceeEEEEEEecCccccceeEEEec
Confidence 9999999999998876654 44674 59999999999999999999999986
No 2
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.1e-105 Score=1097.82 Aligned_cols=801 Identities=33% Similarity=0.540 Sum_probs=713.7
Q ss_pred CccccccCchhHhhhc-CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC---------CCceEE
Q 043190 669 PLPVTALGNNIYEALY-NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ---------SDMKVV 738 (1492)
Q Consensus 669 ~~~~~~l~~~~~~~~~-~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~---------~~~~~l 738 (1492)
..|++.|+.+ .+..| ||++||++|+++++.++++++|++++||||||||++|+++|++.+.+. .+.++|
T Consensus 60 l~~i~~Lp~~-~~~~f~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~l 138 (1724)
T 4f92_B 60 LLPVEKLPKY-AQAGFEGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKII 138 (1724)
T ss_dssp CCBTTTSCGG-GSTTCTTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEE
T ss_pred ccchHhcCHH-HHHhcCCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEE
Confidence 3456667644 44555 899999999999999998999999999999999999999999988642 367999
Q ss_pred EEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEeccc
Q 043190 739 YIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIH 818 (1492)
Q Consensus 739 ~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH 818 (1492)
|++|+||||.|++++|.+.++.. |++|..++||...+.+....++|+|||||+|+.+++++.....++++++|||||+|
T Consensus 139 yiaP~kALa~e~~~~l~~~~~~~-gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH 217 (1724)
T 4f92_B 139 YIAPMRSLVQEMVGSFGKRLATY-GITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIH 217 (1724)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTT-TCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGG
T ss_pred EECCHHHHHHHHHHHHHHHHhhC-CCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecch
Confidence 99999999999999999988876 99999999999877777778999999999999999987666778999999999999
Q ss_pred ccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCc-ceeEecCCCccccCcEEEEeccCCcccc
Q 043190 819 LLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGKFYC 897 (1492)
Q Consensus 819 ~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~-~~~~~~~~~~r~~~l~~~~~~~~~~~~~ 897 (1492)
+++++||+.+|.+++|+.+.....+.++|+|+||||++|++++++||+... ..++.+..++||+|++..+.+.......
T Consensus 218 ~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~ 297 (1724)
T 4f92_B 218 LLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAI 297 (1724)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHH
T ss_pred hcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchh
Confidence 999899999999999998776667789999999999999999999999853 4577889999999999887766555444
Q ss_pred ccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCC---ChHHHHHHHhhcCcHHHHHHh
Q 043190 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGM---PEEDLQMVLSQVTDQNLRQTL 974 (1492)
Q Consensus 898 ~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~ 974 (1492)
.....++..++..+.....++++||||+||+.|+.+|..|.+.+........+... ..+.+........+..+.+++
T Consensus 298 ~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 377 (1724)
T 4f92_B 298 KRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLL 377 (1724)
T ss_dssp HHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHT
T ss_pred hhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHh
Confidence 44444455566777777778899999999999999999999877655444333332 223444455556788999999
Q ss_pred ccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCC
Q 043190 975 QFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGR 1054 (1492)
Q Consensus 975 ~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR 1054 (1492)
..||++|||||++++|..+++.|++|.++|||||+++++|||+|++++||+|++.|+++.+++.+++..+|+||+|||||
T Consensus 378 ~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR 457 (1724)
T 4f92_B 378 PYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGR 457 (1724)
T ss_dssp TTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSC
T ss_pred hcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999888899999999999999999
Q ss_pred CCCCCceEEEEEecCCcHHHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCC
Q 043190 1055 PQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGL 1134 (1492)
Q Consensus 1055 ~g~~~~G~~i~l~~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~ 1134 (1492)
+|+|..|.+++++++++...|..++..+.|+||++...+.+++++||+.|++.+.+++++|+.+||+|.|+.+||.+|++
T Consensus 458 ~g~d~~G~~ii~~~~~~~~~~~~ll~~~~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~ 537 (1724)
T 4f92_B 458 PQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGI 537 (1724)
T ss_dssp TTTCSCEEEEEEEESTTCCHHHHHTTTCSCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTC
T ss_pred CCCCCccEEEEEecchhHHHHHHHHcCCCcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC---cccHHHHHHHHHHHHHHHhHHCCCceecCCc--cccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHH
Q 043190 1135 EDTE---AEGLSSYLSRLVQNTFEDLEDSGCVKMTEDT--VEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHIL 1209 (1492)
Q Consensus 1135 ~~~~---~~~~~~~l~~~i~~~l~~L~~~~~i~~~~~~--~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~il 1209 (1492)
...+ .+.+++.+.++|++++..|.++|+|..++++ +.+|++|++||+|||++.|+..|.+.+++.++..++|+++
T Consensus 538 ~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~~~ll~~i 617 (1724)
T 4f92_B 538 SHDDLKGDPLLDQRRLDLVHTAALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVF 617 (1724)
T ss_dssp CHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCHHHHHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHCCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 7542 3456788889999999999999999987654 9999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCcCCCChhHHHHHhhcccceeecCCCCCChhHHHHHHHHHHhcCCCCCCcchHhhHHHHHHhHHHHHHHHHH
Q 043190 1210 SGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMID 1289 (1492)
Q Consensus 1210 s~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~K~~lLlqa~l~r~~l~~~~l~~D~~~il~~~~rl~~a~~~ 1289 (1492)
|.++||..+++|++|...+++|.+.+|+++. ..+++++.|+++|||+||++++++..++.+|+.+|.+++.||++|++|
T Consensus 618 s~s~ef~~i~~R~~E~~~l~~l~~~~~~~~~-~~~~~~~~Kv~~Llq~~i~~~~~~~~~l~~D~~~i~~~a~ri~ra~~e 696 (1724)
T 4f92_B 618 SLSSEFKNITVREEEKLELQKLLERVPIPVK-ESIEEPSAKINVLLQAFISQLKLEGFALMADMVYVTQLAGRLMRAIFE 696 (1724)
T ss_dssp HTCGGGTTCCCCGGGHHHHHHHHHHSSSCCC-SCCSSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCChhhccCCcCHHHHHHHHHHHhcCCCCcC-CCCCChHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998875 457789999999999999999998889999999999999999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhC-CchHHHHH
Q 043190 1290 ICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIG-NFPVSRLH 1368 (1492)
Q Consensus 1290 i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~-~~~~~~i~ 1368 (1492)
++..+||...+.++++|++||.+|+|++ .+||+|+|++|++.+++|.++|+ |+++|.++++.++..+++ +..+..|.
T Consensus 697 i~~~~~~~~~~~~~l~l~k~i~~~~w~~-~~~L~q~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~l~~~~~~~~~g~~i~ 774 (1724)
T 4f92_B 697 IVLNRGWAQLTDKTLNLCKMIDKRMWQS-MCPLRQFRKLPEEVVKKIEKKNF-PFERLYDLNHNEIGELIRMPKMGKTIH 774 (1724)
T ss_dssp HHHHTTBHHHHHHHHHHHHHHHHTSCTT-SCGGGGSTTSCHHHHHHHHTSSC-CGGGGGGCCHHHHHHHHTCSTTHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhCCCCC-CCceecCCCCCHHHHHHHHhcCC-CHHHHHhCCHHHHHHHHCCchHHHHHH
Confidence 9999999999999999999999999998 89999999999999999999999 899999999999998876 44689999
Q ss_pred HHhcCCCceEEEEEEEeccCCCCCeEEEEEEEEeccCCCCCCccccccCCCCccceEEEEEEeCCCCeEEEEEEeecCCc
Q 043190 1369 QDLQRFPRIQVKLRLQRRDIDGENSLTLNIRMDKMNSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSDR 1448 (1492)
Q Consensus 1369 ~~~~~~P~i~i~~~~~~~~~~~~~~~~l~v~l~~~~~~~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~r~~~~~~ 1448 (1492)
+.+++||.+++++.+++ .+.+.+.+.++++... .|.+++|. +.|.||++|+|.+++.|+.++++.+++.
T Consensus 775 ~~~~~~P~~~~~~~~~p---~~~~~~~~~~~~~~~~-------~w~~~~h~-~~~~~~~~v~d~~~~~i~~~~~~~~~~~ 843 (1724)
T 4f92_B 775 KYVHLFPKLELSVHLQP---ITRSTLKVELTITPDF-------QWDEKVHG-SSEAFWILVEDVDSEVILHHEYFLLKAK 843 (1724)
T ss_dssp HHHTTSCCEEEEEEEEE---SSSSEEEEEEEEEECS-------CCCTTTTT-TEEEEEEEEECTTSCBEEEEEEEEEEGG
T ss_pred HHHHHCCCceEEEEEEe---cCCceEEEEEEEeecc-------ccchhhcC-CceeEEEEEEecCCCeEEEEEEEEeeee
Confidence 99999999999999998 3456666777776543 45566664 6899999999999999999988876554
Q ss_pred -----ceEEEEecCCCCCcceEEEEEEeCCCCCccEEEEEEE
Q 043190 1449 -----LNTHMELPSGITTFQGMKLVVVSDCYLGFEQEHSIEA 1485 (1492)
Q Consensus 1449 -----~~~~~~~p~~~~~~~~~~v~~~sd~y~G~D~~~~i~~ 1485 (1492)
..+.|.+|...|...+|.|.++||.|+|++.++++.+
T Consensus 844 ~~~~~~~~~~~~p~~~~~p~~~~i~~~sd~w~~~~~~~~~~~ 885 (1724)
T 4f92_B 844 YAQDEHLITFFVPVFEPLPPQYFIRVVSDRWLSCETQLPVSF 885 (1724)
T ss_dssp GTTSCEEEEEEEECCSSCCSEEEEEEEESSSTTCEEEEEEEC
T ss_pred ccCCceEEEEEEECCCCCCCeEEEEEEEccccCCCceeeecc
Confidence 3478889987777889999999999999999999976
No 3
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.8e-78 Score=786.86 Aligned_cols=648 Identities=27% Similarity=0.375 Sum_probs=525.8
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
+||.+|+|+|.++++.+. +++|++++||||||||+++++++++.+.. +++++|++|+++||.|++++|+ .+... |
T Consensus 21 ~g~~~l~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~i~P~r~La~q~~~~~~-~~~~~-g 95 (702)
T 2p6r_A 21 EGIEELFPPQAEAVEKVF-SGKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYVVPLRALAGEKYESFK-KWEKI-G 95 (702)
T ss_dssp C---CCCCCCHHHHHHHT-TCSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHT-TTTTT-T
T ss_pred CCCCCCCHHHHHHHHHHh-CCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEEEeCcHHHHHHHHHHHH-HHHhc-C
Confidence 489999999999999976 78999999999999999999999988764 6899999999999999999994 46555 8
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhcc
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~ 842 (1492)
.+++.++|+.........+++|+|+|||+|+.++++ ...+++++++||+||+|++++ .|+..++.++.+++..
T Consensus 96 ~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~---- 169 (702)
T 2p6r_A 96 LRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRN--RASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRM---- 169 (702)
T ss_dssp CCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHT--TCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHH----
T ss_pred CEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHc--ChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhc----
Confidence 999999999877666666899999999999998887 344588999999999999875 6999999999998754
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccc----cccChhHHHHH-hhcCCC
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM----NSMNKPAYAAI-CTHSPT 917 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~l-~~~~~~ 917 (1492)
.++.|+|+||||++|.+++++|++.+. +....||+++...+.......+.... .... ....+ ....++
T Consensus 170 ~~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 242 (702)
T 2p6r_A 170 NKALRVIGLSATAPNVTEIAEWLDADY-----YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVK--FEELVEECVAEN 242 (702)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHTTCEE-----EECCCCSSCEEEEEECSSEEEEEETTEEEEEECC--HHHHHHHHHHTT
T ss_pred CcCceEEEECCCcCCHHHHHHHhCCCc-----ccCCCCCccceEEEeeCCeeeccCcchhhhhhhh--HHHHHHHHHhcC
Confidence 457999999999999999999998543 45677888887665422111111100 0111 11111 112467
Q ss_pred CCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHH
Q 043190 918 KPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELF 997 (1492)
Q Consensus 918 ~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 997 (1492)
+++||||+++++++.++..|.+.....-.... ..+.+........+..+.++++.++++|||+|++++|..+++.|
T Consensus 243 ~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 318 (702)
T 2p6r_A 243 GGVLVFESTRRGAEKTAVKLSAITAKYVENEG----LEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAF 318 (702)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHTTCCCSS----HHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHH
T ss_pred CCEEEEcCCHHHHHHHHHHHHHHHHhhcChHH----HHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHH
Confidence 89999999999999999999876532110000 00011000111224567788889999999999999999999999
Q ss_pred hcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH-HH
Q 043190 998 ANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF-YK 1076 (1492)
Q Consensus 998 ~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~-~~ 1076 (1492)
++|+++|||||+++++|||+|++++||++++.||+. ..++|..+|.||+|||||+|+|..|.|++++++.+... ++
T Consensus 319 ~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~ 395 (702)
T 2p6r_A 319 RRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGY---SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVK 395 (702)
T ss_dssp HTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSS---EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHH
T ss_pred HCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHH
Confidence 999999999999999999999999999999999932 47889999999999999999999999999999887544 44
Q ss_pred Hhh-cCCCceeecccc--cchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHHH
Q 043190 1077 KFL-YEPFPVESSLRD--QLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQNT 1153 (1492)
Q Consensus 1077 ~~l-~~~~pies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~~ 1153 (1492)
+++ ..+.|++|.+.. .|.++++++++.|.+.+.+|+.+|+++||+|+++. . ++.+.++++
T Consensus 396 ~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~----------------~~~~~~~~a 458 (702)
T 2p6r_A 396 RYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-I----------------SLSYELERV 458 (702)
T ss_dssp TTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-C----------------CCHHHHHHH
T ss_pred HHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh-H----------------HHHHHHHHH
Confidence 565 578899999987 68999999999999999999999999999998643 1 124678899
Q ss_pred HHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCC-CCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhh
Q 043190 1154 FEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPD-TSLEVFLHILSGASEYDELPVRHNEDNHNEALS 1232 (1492)
Q Consensus 1154 l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~-~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~ 1232 (1492)
++.|.+.|+|..+ +.+.+|++|+++|+||++|.|+++|..++... .+..+++.++|.++||..+++|++|+...+.+.
T Consensus 459 l~~L~~~g~i~~~-~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e~~~~~~~~ 537 (702)
T 2p6r_A 459 VRQLENWGMVVEA-AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTDSWVEEEAF 537 (702)
T ss_dssp HHHHHHTTSEEES-SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTTHHHHHHHH
T ss_pred HHHHHHCcCeeEC-CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCchHHHHHHHH
Confidence 9999999999876 55899999999999999999999999988875 677799999999999999999999944444443
Q ss_pred c-ccceeecCCCCCC-------hhHHHHHHHHHHhcCCCCCC-c-c---hHhhHHHHHHhHHHHHHHHHHHHHhcCCHHH
Q 043190 1233 Q-RVRFAVDNNRLDD-------PHVKANLLFQAHFSRLDLPI-S-D---YVTDLKSVLDQSIRIIQAMIDICANSGWLSS 1299 (1492)
Q Consensus 1233 ~-~~~~~~~~~~~~~-------~~~K~~lLlqa~l~r~~l~~-~-~---l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~ 1299 (1492)
+ ..++ .+.+.++. ++.|+++|||+|++|.+++. . . +.+|+.+++++|.||++||++||...||.
T Consensus 538 ~~~~~~-~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g~~-- 614 (702)
T 2p6r_A 538 RLRKEL-SYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNT-- 614 (702)
T ss_dssp HHGGGS-SCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred hccccc-cCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHHcCHH--
Confidence 3 1222 11111333 88999999999999998752 1 1 58999999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHHHhcCCCceEE
Q 043190 1300 SITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPRIQV 1379 (1492)
Q Consensus 1300 ~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~~~~P~i~i 1379 (1492)
.+++|+|||.||+|++ .+||+|+|||++.++++|+++|++|+.||++++ +++..+++++.++.+.+.+. +|.+++
T Consensus 615 --~l~~l~~ri~~gv~~~-~~~L~qlp~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ll~~~~~~~i~~~~~-~p~~~~ 689 (702)
T 2p6r_A 615 --SVSGLTERIKHGVKEE-LLELVRIRHIGRVRARKLYNAGIRNAEDIVRHR-EKVASLIGRGIAERVVEGIS-VKSLNP 689 (702)
T ss_dssp --SSTTHHHHHHHTCCGG-GHHHHTSTTCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHHHCHHHHHHHHHHHH-HHC---
T ss_pred --HHHHHHHHHHcCCCcc-hHhhhcCCCCCHHHHHHHHHcCCCCHHHHHhhh-HHHHHHhChhHHHHHHHhcC-CCccCc
Confidence 7778999999999998 899999999999999999999999999999999 99999888778999999999 999998
Q ss_pred EEE
Q 043190 1380 KLR 1382 (1492)
Q Consensus 1380 ~~~ 1382 (1492)
++.
T Consensus 690 ~~~ 692 (702)
T 2p6r_A 690 ESA 692 (702)
T ss_dssp ---
T ss_pred chh
Confidence 643
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=8.5e-77 Score=775.21 Aligned_cols=651 Identities=26% Similarity=0.347 Sum_probs=528.6
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
+||..|+|+|.++++.++.+++|++++||||||||+++++++++.+.. .+++++|++|+++||.|++++|+ .+... |
T Consensus 19 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~~l~i~P~raLa~q~~~~~~-~l~~~-g 95 (720)
T 2zj8_A 19 RGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILT-QGGKAVYIVPLKALAEEKFQEFQ-DWEKI-G 95 (720)
T ss_dssp TTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHH-HCSEEEEECSSGGGHHHHHHHTG-GGGGG-T
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHh-CCCEEEEEcCcHHHHHHHHHHHH-HHHhc-C
Confidence 499999999999999844478999999999999999999999987763 26899999999999999999995 46655 8
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhcc
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~ 842 (1492)
.+++.++|+...+.+...+++|+|+|||+|+.++++ ...+++++++|||||+|++++ +||..++.++.+++
T Consensus 96 ~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~------ 167 (720)
T 2zj8_A 96 LRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRH--GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHML------ 167 (720)
T ss_dssp CCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHH--TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHB------
T ss_pred CEEEEecCCCCccccccCCCCEEEECHHHHHHHHHc--ChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhh------
Confidence 999999999887766667899999999999988887 344588999999999999976 79999999998885
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHH-hhcCCCCCee
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI-CTHSPTKPVL 921 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L 921 (1492)
.+.|+|+||||++|++++++|++... +....||+++...+.......+..............+ ....+++++|
T Consensus 168 -~~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 241 (720)
T 2zj8_A 168 -GKAQIIGLSATIGNPEELAEWLNAEL-----IVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGAL 241 (720)
T ss_dssp -TTBEEEEEECCCSCHHHHHHHTTEEE-----EECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCCEE
T ss_pred -cCCeEEEEcCCcCCHHHHHHHhCCcc-----cCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCCEE
Confidence 27899999999999999999997542 4567788887765432111111110000011111111 1124568999
Q ss_pred EEecChHHHHHHHHHHHHHHhcCCCCcccCCC-ChHHHHHHHhhc----CcHHHHHHhccceEeecCCCCHHHHHHHHHH
Q 043190 922 IFVSSRRQTRLTALDLIQFAASDETPRQFLGM-PEEDLQMVLSQV----TDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL 996 (1492)
Q Consensus 922 IF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 996 (1492)
|||++++.|+.++..|.+..... ... ....+......+ .+..+.+.+..++++|||+|++++|..+++.
T Consensus 242 VF~~sr~~~~~~a~~L~~~~~~~------~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 315 (720)
T 2zj8_A 242 IFVNMRRKAERVALELSKKVKSL------LTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEEN 315 (720)
T ss_dssp EECSCHHHHHHHHHHHHHHHGGG------SCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred EEecCHHHHHHHHHHHHHHHHHh------cChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHH
Confidence 99999999999999998764320 000 001111122221 2345778888999999999999999999999
Q ss_pred HhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH-H
Q 043190 997 FANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF-Y 1075 (1492)
Q Consensus 997 f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~-~ 1075 (1492)
|++|.++|||||+++++|||+|++++||+++++|++. ++.++|..+|.||+|||||+|+|..|.|++++++.+... +
T Consensus 316 f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~--g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~ 393 (720)
T 2zj8_A 316 FRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDF--GMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVM 393 (720)
T ss_dssp HHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSS--SCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHH
T ss_pred HHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCC--CCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHH
Confidence 9999999999999999999999999999999999932 246889999999999999999999999999999887543 5
Q ss_pred HHhh-cCCCceeecccc--cchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHH
Q 043190 1076 KKFL-YEPFPVESSLRD--QLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQN 1152 (1492)
Q Consensus 1076 ~~~l-~~~~pies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~ 1152 (1492)
++++ .++.|+++.+.. .|.++++++++.|.+.+.+|+.+|+.+||+|+++.. ..++.+.+++
T Consensus 394 ~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~---------------~~~~~~~~~~ 458 (720)
T 2zj8_A 394 NHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKD---------------TYSLEEKIRN 458 (720)
T ss_dssp HHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSC---------------CHHHHHHHHH
T ss_pred HHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccc---------------hHHHHHHHHH
Confidence 5566 567889999876 589999999999999999999999999999987531 1456788999
Q ss_pred HHHHhHHCCCce-ecCCccccccchhhhhhccccHHHHHHHHhccCCC---CCHHHHHHHHhCCCCCCCCcCCCChhHHH
Q 043190 1153 TFEDLEDSGCVK-MTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPD---TSLEVFLHILSGASEYDELPVRHNEDNHN 1228 (1492)
Q Consensus 1153 ~l~~L~~~~~i~-~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~---~~~~~ll~ils~a~Ef~~i~~R~~e~~~l 1228 (1492)
+++.|.+.|+|. .+++.+.+|++|+++|+||++|.|+++|..++... .+..++|.++|.++||..+++|++|...+
T Consensus 459 ~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~~~l 538 (720)
T 2zj8_A 459 ILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREFERL 538 (720)
T ss_dssp HHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHHHHH
T ss_pred HHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHHHHH
Confidence 999999999998 55556999999999999999999999999887763 67889999999999999999999998888
Q ss_pred HHhhcc------cceeecCCC----CC--ChhHHHHHHHHHHhcCCCCCC-c-c---hHhhHHHHHHhHHHHHHHHHHHH
Q 043190 1229 EALSQR------VRFAVDNNR----LD--DPHVKANLLFQAHFSRLDLPI-S-D---YVTDLKSVLDQSIRIIQAMIDIC 1291 (1492)
Q Consensus 1229 ~~l~~~------~~~~~~~~~----~~--~~~~K~~lLlqa~l~r~~l~~-~-~---l~~D~~~il~~~~rl~~a~~~i~ 1291 (1492)
.++... .+.+++... +. .++.|+++|||+|++|.+++. . . +.+|+.+++++|.||++||+++|
T Consensus 539 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~~i~ 618 (720)
T 2zj8_A 539 EEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLKEIA 618 (720)
T ss_dssp HHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHHHHH
Confidence 776421 222222110 11 178999999999999998762 1 1 58999999999999999999999
Q ss_pred HhcCCHHHHHHHHH-HHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHH
Q 043190 1292 ANSGWLSSSITCMH-LLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLH 1368 (1492)
Q Consensus 1292 ~~~~~~~~~~~~l~-l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~ 1368 (1492)
...||... .++|. |+|||.||+|++ .+||+|||||++.++++|+++|++|+.||++++++++..+ +++...+++.
T Consensus 619 ~~~g~~~~-~~~l~~l~~rl~~gv~~e-~~~L~qlp~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~~~ 696 (720)
T 2zj8_A 619 KVLGAYEI-VDYLETLRVRVKYGIREE-LIPLMQLPLVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEAIF 696 (720)
T ss_dssp HHHTCGGG-HHHHHHHHHHHHHTCCGG-GGGGTTSTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHH
T ss_pred HHcCcHHH-HHHHHHHHHHHHcCCCcc-chhhhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHHHHHHHHH
Confidence 99999764 45665 999999999998 8999999999999999999999999999999999999887 5667788899
Q ss_pred HHhcCCCc
Q 043190 1369 QDLQRFPR 1376 (1492)
Q Consensus 1369 ~~~~~~P~ 1376 (1492)
.++.++|.
T Consensus 697 ~~~~~~~~ 704 (720)
T 2zj8_A 697 KFLGKNVK 704 (720)
T ss_dssp HHHC----
T ss_pred Hhcccccc
Confidence 99999997
No 5
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.5e-75 Score=762.45 Aligned_cols=649 Identities=25% Similarity=0.362 Sum_probs=522.2
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
+||.+|+|+|.++++.++.++++++++||||||||+++++++++.+.. .+++++|++|+|+||.|++++|+ .+... |
T Consensus 26 ~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~il~i~P~r~La~q~~~~~~-~~~~~-g 102 (715)
T 2va8_A 26 RGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-NGGKAIYVTPLRALTNEKYLTFK-DWELI-G 102 (715)
T ss_dssp TSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHHHHHG-GGGGG-T
T ss_pred CCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-CCCeEEEEeCcHHHHHHHHHHHH-HhhcC-C
Confidence 489999999999999955589999999999999999999999988764 26899999999999999999994 46555 8
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhcc
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~ 842 (1492)
.+++..+|+.........+++|+|+|||+|+.++++ ...+++++++|||||+|++++ .+|..++.++.+++
T Consensus 103 ~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~------ 174 (715)
T 2va8_A 103 FKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRH--RPEWLNEVNYFVLDELHYLNDPERGPVVESVTIRAK------ 174 (715)
T ss_dssp CCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHH--CCGGGGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH------
T ss_pred CEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhC--ChhHhhccCEEEEechhhcCCcccchHHHHHHHhcc------
Confidence 999999999877665566899999999999998887 344588999999999999875 78999999998876
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCc------cccc---cccccChhHHHHHh-
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGK------FYCP---RMNSMNKPAYAAIC- 912 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~------~~~~---~~~~~~~~~~~~l~- 912 (1492)
+.|+|+||||++|.+++++|++... +....||+++...+...... .+.. ............+.
T Consensus 175 --~~~ii~lSATl~n~~~~~~~l~~~~-----~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (715)
T 2va8_A 175 --RRNLLALSATISNYKQIAKWLGAEP-----VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLD 247 (715)
T ss_dssp --TSEEEEEESCCTTHHHHHHHHTCEE-----EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHH
T ss_pred --cCcEEEEcCCCCCHHHHHHHhCCCc-----cCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHH
Confidence 6899999999999999999998543 35677888877654321100 0110 00000122222222
Q ss_pred hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCC-ChHHHHHHHhhc------CcHHHHHHhccceEeecCCC
Q 043190 913 THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGM-PEEDLQMVLSQV------TDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 913 ~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~-~~~~~~~~~~~~------~~~~l~~~~~~~v~~~h~~l 985 (1492)
...+++++||||+++++++.++..|.+..... ++.. ...++......+ .+..+.++++.++++|||+|
T Consensus 248 ~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l 322 (715)
T 2va8_A 248 SLSKNGQVLVFRNSRKMAESTALKIANYMNFV-----SLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGL 322 (715)
T ss_dssp HHTTTCCEEEECSSHHHHHHHHHHHHHTTTSS-----CCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTS
T ss_pred HHhcCCCEEEEECCHHHHHHHHHHHHHHHhhc-----cCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCC
Confidence 23567899999999999999999997643220 1110 011222222222 23567788889999999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCc-cccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKR-YVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~-~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
+.++|..+++.|++|.++|||||+++++|||+|++++||++++.|+++.+. +.++|.++|.||+|||||+|+|..|.|+
T Consensus 323 ~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~ 402 (715)
T 2va8_A 323 SKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESI 402 (715)
T ss_dssp CHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEE
T ss_pred CHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEE
Confidence 999999999999999999999999999999999999999999999954321 4678899999999999999999999999
Q ss_pred EEecCCcH--HHHHHhh-cCCCceeecccc--cchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCc
Q 043190 1065 ILVHEPKK--SFYKKFL-YEPFPVESSLRD--QLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEA 1139 (1492)
Q Consensus 1065 ~l~~~~~~--~~~~~~l-~~~~pies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~ 1139 (1492)
+++++.+. ..+++++ .++.++++.+.. .|.++++++++.|.+.+.+|+.+|+++||+|++..
T Consensus 403 ~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~------------- 469 (715)
T 2va8_A 403 VVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLV------------- 469 (715)
T ss_dssp EECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHH-------------
T ss_pred EEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcc-------------
Confidence 99987763 4566676 578899999977 68899999999999999999999999999987532
Q ss_pred ccHHHHHHHHHHHHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCC--CCCHHHHHHHHhCCCCCCC
Q 043190 1140 EGLSSYLSRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGP--DTSLEVFLHILSGASEYDE 1217 (1492)
Q Consensus 1140 ~~~~~~l~~~i~~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~--~~~~~~ll~ils~a~Ef~~ 1217 (1492)
...++++++.|.+.|+|..+++.+.+|++|+++|+||++|.++++|..++.. ..+..+++.++|.++||..
T Consensus 470 -------~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~ 542 (715)
T 2va8_A 470 -------DVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTPDGPL 542 (715)
T ss_dssp -------HHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHSTTSCC
T ss_pred -------hHHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCccccc
Confidence 1237899999999999998776799999999999999999999999988776 4788899999999999999
Q ss_pred CcCCCChhHHHHHhhc-ccceeecCCCCC-------ChhHHHHHHHHHHhcCCCCCC--cch---HhhHHHHHHhHHHHH
Q 043190 1218 LPVRHNEDNHNEALSQ-RVRFAVDNNRLD-------DPHVKANLLFQAHFSRLDLPI--SDY---VTDLKSVLDQSIRII 1284 (1492)
Q Consensus 1218 i~~R~~e~~~l~~l~~-~~~~~~~~~~~~-------~~~~K~~lLlqa~l~r~~l~~--~~l---~~D~~~il~~~~rl~ 1284 (1492)
+++|++|...+.++.. ..+.......+. .++.|+++|||+|++|.++.. ..| .+|+.+++++|.|++
T Consensus 543 ~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~~a~~l~ 622 (715)
T 2va8_A 543 VSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVETMDWLT 622 (715)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 9999999998888743 222111111122 178999999999999998752 123 899999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchH
Q 043190 1285 QAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPV 1364 (1492)
Q Consensus 1285 ~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~ 1364 (1492)
+|+.+||...||...+..+.+|++||.+|+|++ ..||+|+||+++.++++|+++|++|++||+ ++++++..+++++.+
T Consensus 623 ~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e-~~~L~qlp~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~l~~~~~ 700 (715)
T 2va8_A 623 YSAYHLSRELKLNEHADKLRILNLRVRDGIKEE-LLELVQISGVGRKRARLLYNNGIKELGDVV-MNPDKVKNLLGQKLG 700 (715)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGG-GHHHHTSTTCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChh-hcchhhCCCCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHHhChhHH
Confidence 999999999999998888899999999999998 999999999999999999999999999999 999999999887777
Q ss_pred HHHHH-HhcCCCce
Q 043190 1365 SRLHQ-DLQRFPRI 1377 (1492)
Q Consensus 1365 ~~i~~-~~~~~P~i 1377 (1492)
+.+.+ ....+|.+
T Consensus 701 ~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 701 EKVVQEAARLLNRF 714 (715)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHhhccC
Confidence 88877 44556643
No 6
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.8e-60 Score=615.49 Aligned_cols=500 Identities=21% Similarity=0.283 Sum_probs=406.1
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHH----HHhhHHHHHHHHHHHhc
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARN----ELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 80 (1492)
++++|+|+||||++|++++++|+++. .+..++||+|+..++............ ..+. ....+.+.+.+
T Consensus 170 ~~~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 241 (702)
T 2p6r_A 170 NKALRVIGLSATAPNVTEIAEWLDAD------YYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVK--FEELVEECVAE 241 (702)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHTTCE------EEECCCCSSCEEEEEECSSEEEEEETTEEEEEECC--HHHHHHHHHHT
T ss_pred CcCceEEEECCCcCCHHHHHHHhCCC------cccCCCCCccceEEEeeCCeeeccCcchhhhhhhh--HHHHHHHHHhc
Confidence 45799999999999999999999865 478899999998765421100000000 0000 23344455578
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
++++||||+||++|+.+|+.|.+..... ..... ..+.+........++.|.+++..||++|||||++++|..+
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~------~~~~~-~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 314 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKY------VENEG-LEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVV 314 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTT------CCCSS-HHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHH
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhh------cChHH-HHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHH
Confidence 8999999999999999999998765421 11111 0011111111223467889999999999999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
++.|++|.++|||||+++++|||+|+++|||++++.||+...+++..+|.||+|||||+|+|..|.|++++++.+.+.+.
T Consensus 315 ~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~ 394 (702)
T 2p6r_A 315 EDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAV 394 (702)
T ss_dssp HHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHH
T ss_pred HHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHH
Confidence 99999999999999999999999999999999999998322235667799999999999999999999999988866544
Q ss_pred H-Hh-cCCCccccchhH--hHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHH
Q 043190 241 R-LL-TSQLPIESQFIS--SLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRAL 316 (1492)
Q Consensus 241 ~-~~-~~~~~ies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~ 316 (1492)
+ ++ +.++|++|.+.. .|.++++++++.|++.+.+++.+|+.+||+|+++. .| ..+.
T Consensus 395 ~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~-~~-------------------~~~~ 454 (702)
T 2p6r_A 395 KRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNE-IS-------------------LSYE 454 (702)
T ss_dssp HTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHC-CC-------------------CHHH
T ss_pred HHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhh-HH-------------------HHHH
Confidence 3 44 578899999986 79999999999999999999999999999999865 11 1478
Q ss_pred HHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcC-CCHHHHHHHhcCCccCCCCccchhHHH
Q 043190 317 VTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRH-MNDSEVIEMVSHSSEFENIVVRDEEQN 395 (1492)
Q Consensus 317 ~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~-~~~~~ll~ils~s~Ef~~i~~R~~e~~ 395 (1492)
++++++.|.+.|+|+.+ +.+.+|++|++||+||++|.|++.|...++.. .+..++|.++|.++||.++++|+.| .
T Consensus 455 ~~~al~~L~~~g~i~~~---~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~e~~~i~~r~~e-~ 530 (702)
T 2p6r_A 455 LERVVRQLENWGMVVEA---AHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTPDMERLTVRKTD-S 530 (702)
T ss_dssp HHHHHHHHHHTTSEEES---SSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHSTTSCCCCCCTTT-H
T ss_pred HHHHHHHHHHCcCeeEC---CeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCcccccCCCCCch-H
Confidence 89999999999999865 56899999999999999999999999998875 6788999999999999999999999 6
Q ss_pred HHHHHHhc-CCcc---c-ccCC---CCChhHHHHHHHHHHHcCCCCCC----chh-HhhHHHHHHhHHHHHHHHHHHHHh
Q 043190 396 ELETLVQT-LCPV---E-VKGG---PSNKHGKISILIQLYISRGWIDT----FSL-VSDAAYISASLARIMRALFETCLR 462 (1492)
Q Consensus 396 ~l~~l~~~-~~~~---~-~~~~---~~~~~~K~~~Llqa~i~~~~~~~----~~l-~~d~~~i~~~~~rl~~al~ei~~~ 462 (1492)
++.++..+ ..++ | +++. ...++.|+++|||+|++|.+++. |++ .+|+++++++|.|+++|+++||..
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~ 610 (702)
T 2p6r_A 531 WVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEE 610 (702)
T ss_dssp HHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 66666533 1222 2 1110 01278999999999999998763 666 699999999999999999999999
Q ss_pred cCcHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhcCCchHHHHHHHhc
Q 043190 463 RGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIRYTPGGRLVKQYLG 541 (1492)
Q Consensus 463 ~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~ 541 (1492)
.||. .+++|++||.||+|++.+||+|+| ++++.++++|+++|+ |+.+|.+++ +++..+++ +++|++|.+.++
T Consensus 611 ~g~~----~l~~l~~ri~~gv~~~~~~L~qlp-~v~~~~ar~l~~~g~~s~~~l~~~~-~~l~~ll~-~~~~~~i~~~~~ 683 (702)
T 2p6r_A 611 VGNT----SVSGLTERIKHGVKEELLELVRIR-HIGRVRARKLYNAGIRNAEDIVRHR-EKVASLIG-RGIAERVVEGIS 683 (702)
T ss_dssp TTCC----SSTTHHHHHHHTCCGGGHHHHTST-TCCHHHHHHHHTTTCCSHHHHHHTH-HHHHHHHC-HHHHHHHHHHHH
T ss_pred cCHH----HHHHHHHHHHcCCCcchHhhhcCC-CCCHHHHHHHHHcCCCCHHHHHhhh-HHHHHHhC-hhHHHHHHHhcC
Confidence 9997 778899999999999999999999 999999999999999 999999999 99999998 999999999999
Q ss_pred cCCceeEEEE
Q 043190 542 YFPSIQLSAT 551 (1492)
Q Consensus 542 ~~P~~~i~~~ 551 (1492)
+|.+++++.
T Consensus 684 -~p~~~~~~~ 692 (702)
T 2p6r_A 684 -VKSLNPESA 692 (702)
T ss_dssp -HHC------
T ss_pred -CCccCcchh
Confidence 999998643
No 7
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=5.6e-59 Score=607.23 Aligned_cols=505 Identities=20% Similarity=0.262 Sum_probs=404.9
Q ss_pred cccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEE
Q 043190 7 MIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMV 86 (1492)
Q Consensus 7 ~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lV 86 (1492)
++|+|+||||+||++++++|++.. .+..++||+|+...+..-...................+.+.+.+++++||
T Consensus 169 ~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LV 242 (720)
T 2zj8_A 169 KAQIIGLSATIGNPEELAEWLNAE------LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALI 242 (720)
T ss_dssp TBEEEEEECCCSCHHHHHHHTTEE------EEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCCEEE
T ss_pred CCeEEEEcCCcCCHHHHHHHhCCc------ccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCCEEE
Confidence 789999999999999999999765 47789999999876542110000000000001112344445577899999
Q ss_pred EEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhh----cCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 87 FVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMK----SRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 87 F~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
||+||++|+.+|+.|.+.....- .......+...... ..+..|.+++..||++|||||++++|..+++
T Consensus 243 F~~sr~~~~~~a~~L~~~~~~~~--------~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 314 (720)
T 2zj8_A 243 FVNMRRKAERVALELSKKVKSLL--------TKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEE 314 (720)
T ss_dssp ECSCHHHHHHHHHHHHHHHGGGS--------CHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHHHHHhc--------ChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 99999999999999987643210 00111111111111 1244588999999999999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCC-CCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH-HH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKA-GGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY-YL 240 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~-~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~-~~ 240 (1492)
.|++|.++|||||+++++|||+|+++|||++++.||+.. .+++..+|+||+|||||+|+|..|.|++++++.+... +.
T Consensus 315 ~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~ 394 (720)
T 2zj8_A 315 NFRKGIIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMN 394 (720)
T ss_dssp HHHTTSSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHH
T ss_pred HHHCCCCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHH
Confidence 999999999999999999999999999999999998321 1356667999999999999999999999999887654 33
Q ss_pred HHh-cCCCccccchhH--hHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHH
Q 043190 241 RLL-TSQLPIESQFIS--SLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALV 317 (1492)
Q Consensus 241 ~~~-~~~~~ies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~ 317 (1492)
+++ +.+.|++|++.. .+.++++++++.|.+.+.+++.+|+.+||+|.++..+ .++.+.+
T Consensus 395 ~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~------------------~~~~~~~ 456 (720)
T 2zj8_A 395 HYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDT------------------YSLEEKI 456 (720)
T ss_dssp HHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCC------------------HHHHHHH
T ss_pred HHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccch------------------HHHHHHH
Confidence 455 567899999876 7999999999999999999999999999999986422 1335789
Q ss_pred HHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcC---CCHHHHHHHhcCCccCCCCccchhHH
Q 043190 318 TDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRH---MNDSEVIEMVSHSSEFENIVVRDEEQ 394 (1492)
Q Consensus 318 ~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~---~~~~~ll~ils~s~Ef~~i~~R~~e~ 394 (1492)
+++++.|.+.|+|+.+. ++.+.+|++|++||+||++|.|++.|...++.. .+..++|.++|+++||+++++|++|+
T Consensus 457 ~~~l~~L~~~~~i~~~~-~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r~~e~ 535 (720)
T 2zj8_A 457 RNILYFLLENEFIEISL-EDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYSKREF 535 (720)
T ss_dssp HHHHHHHHHTTSEEECT-TSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCCHHHH
T ss_pred HHHHHHHHHCCCeeECC-CCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccCHHHH
Confidence 99999999999998322 467999999999999999999999999998874 78899999999999999999999999
Q ss_pred HHHHHHHhc-----CCcccccCCCCC-------hhHHHHHHHHHHHcCCCCC----Cchh-HhhHHHHHHhHHHHHHHHH
Q 043190 395 NELETLVQT-----LCPVEVKGGPSN-------KHGKISILIQLYISRGWID----TFSL-VSDAAYISASLARIMRALF 457 (1492)
Q Consensus 395 ~~l~~l~~~-----~~~~~~~~~~~~-------~~~K~~~Llqa~i~~~~~~----~~~l-~~d~~~i~~~~~rl~~al~ 457 (1492)
.++.++..+ ..+.|++..... ++.|+++|||+|++|.+++ .|++ .+|+++++++|.|+++|++
T Consensus 536 ~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~~ 615 (720)
T 2zj8_A 536 ERLEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVEKYSVEPGDIYRIVETAEWLVYSLK 615 (720)
T ss_dssp HHHHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHhCCChHhHHHHHHHHHHHHHHHH
Confidence 999988532 234445442222 7899999999999999876 3555 6999999999999999999
Q ss_pred HHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHH
Q 043190 458 ETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRL 535 (1492)
Q Consensus 458 ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~ 535 (1492)
+||...||...+..+.+|++||.||+|++.+||+||| +|++.++++|+++|+ |+.+|.+++++++..+-+ .++..+.
T Consensus 616 ~i~~~~g~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp-~v~~~rar~L~~~G~~s~~dl~~~~~~~l~~~~~~~~~i~~~ 694 (720)
T 2zj8_A 616 EIAKVLGAYEIVDYLETLRVRVKYGIREELIPLMQLP-LVGRRRARALYNSGFRSIEDISQARPEELLKIEGIGVKTVEA 694 (720)
T ss_dssp HHHHHHTCGGGHHHHHHHHHHHHHTCCGGGGGGTTST-TCCHHHHHHHHTTTCCSHHHHHTCCHHHHHTSTTCCHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHcCCCccchhhhhCC-CCCHHHHHHHHHcCCCCHHHHHhCCHHHHHHhHhHHHHHHHH
Confidence 9999999986666666699999999999999999999 999999999999999 999999999999998822 4566677
Q ss_pred HHHHhccCCc
Q 043190 536 VKQYLGYFPS 545 (1492)
Q Consensus 536 i~~~~~~~P~ 545 (1492)
+..++.++|.
T Consensus 695 ~~~~~~~~~~ 704 (720)
T 2zj8_A 695 IFKFLGKNVK 704 (720)
T ss_dssp HHHHHC----
T ss_pred HHHhcccccc
Confidence 7777777776
No 8
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.9e-58 Score=603.01 Aligned_cols=499 Identities=22% Similarity=0.276 Sum_probs=403.6
Q ss_pred cccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCc------hhH-HHHHh--hHHHHHHHHHH
Q 043190 7 MIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPN------FAA-RNELL--SEICYKKVVDS 77 (1492)
Q Consensus 7 ~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~------~~~-~~~~~--~~~~~~~~~~~ 77 (1492)
++|+|+||||++|++++++|+++. .+..++||+|+..++....... +.. ....+ ....+..+.+.
T Consensus 175 ~~~ii~lSATl~n~~~~~~~l~~~------~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (715)
T 2va8_A 175 RRNLLALSATISNYKQIAKWLGAE------PVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDS 248 (715)
T ss_dssp TSEEEEEESCCTTHHHHHHHHTCE------EEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHH
T ss_pred cCcEEEEcCCCCCHHHHHHHhCCC------ccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHH
Confidence 689999999999999999999865 4778999999987664322100 000 00000 12234455566
Q ss_pred HhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhh------cCchHHHHHhcccEEEEcCC
Q 043190 78 LRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMK------SRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 78 ~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~gv~~hhag 151 (1492)
+.+++++||||+||++|+.+|+.|.+..... .+ ...+...+...... ..++.|.+++..||++||||
T Consensus 249 ~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~----~~---~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~ 321 (715)
T 2va8_A 249 LSKNGQVLVFRNSRKMAESTALKIANYMNFV----SL---DENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAG 321 (715)
T ss_dssp HTTTCCEEEECSSHHHHHHHHHHHHHTTTSS----CC---CHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTT
T ss_pred HhcCCCEEEEECCHHHHHHHHHHHHHHHhhc----cC---ChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCC
Confidence 6788999999999999999999998643210 00 11111122222211 12467889999999999999
Q ss_pred CChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCC----CCcccCchhhhhhccCCCCCCccceE
Q 043190 152 MLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKA----GGWRDLGMLDIFGRAGRPQFDRSGEG 227 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~----~~~~~~~~~~~~GRAGR~~~d~~G~~ 227 (1492)
|++++|..+++.|++|.++|||||+++++|||+|+++|||++++.||+.. .+++..+|.||+|||||+|+|..|.|
T Consensus 322 l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~ 401 (715)
T 2va8_A 322 LSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGES 401 (715)
T ss_dssp SCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEE
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceE
Confidence 99999999999999999999999999999999999999999999999433 23566779999999999999999999
Q ss_pred EEEeCCcc-HH-HHHHHh-cCCCccccchhH--hHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCccc
Q 043190 228 IIITSHDK-LA-YYLRLL-TSQLPIESQFIS--SLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDE 302 (1492)
Q Consensus 228 i~~~~~~~-~~-~~~~~~-~~~~~ies~l~~--~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~ 302 (1492)
++++++.+ .. .+.+++ ..+++++|++.. .|.++++++++.|.+.+.+++.+|+.+||+|++...
T Consensus 402 ~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~----------- 470 (715)
T 2va8_A 402 IVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVD----------- 470 (715)
T ss_dssp EEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHH-----------
T ss_pred EEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcch-----------
Confidence 99998776 33 344444 567899999976 799999999999999999999999999999987431
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhc--CCCHHHHHHHhcC
Q 043190 303 VIADPSLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRR--HMNDSEVIEMVSH 380 (1492)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~--~~~~~~ll~ils~ 380 (1492)
..++++++.|.+.|+|+.+ ++.+.+|++|++||+||++|.+++.|...++. ..+..++|.++|.
T Consensus 471 ------------~~~~~al~~L~~~g~i~~~--~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 536 (715)
T 2va8_A 471 ------------VYFDRAIRWLLEHSFIKEE--GNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAF 536 (715)
T ss_dssp ------------HHHHHHHHHHHHTTSEEEC--SSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHCcCEeec--CCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhc
Confidence 2377999999999999865 46789999999999999999999999999887 4789999999999
Q ss_pred CccCCCCccchhHHHHHHHHHhcC-----CcccccCC---CCChhHHHHHHHHHHHcCCCCCC----chh-HhhHHHHHH
Q 043190 381 SSEFENIVVRDEEQNELETLVQTL-----CPVEVKGG---PSNKHGKISILIQLYISRGWIDT----FSL-VSDAAYISA 447 (1492)
Q Consensus 381 s~Ef~~i~~R~~e~~~l~~l~~~~-----~~~~~~~~---~~~~~~K~~~Llqa~i~~~~~~~----~~l-~~d~~~i~~ 447 (1492)
++||.++++|++|+.++.++..+. .+.+++.. ...++.|+++|||+|++|.++.. |++ .+|++++.+
T Consensus 537 ~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~~~~~i~~~y~~~~gdl~~l~~ 616 (715)
T 2va8_A 537 TPDGPLVSVGRNEEEELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEVDEDTILSKYNIGSGDLRNMVE 616 (715)
T ss_dssp STTSCCCCCCHHHHHHHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CcccccCccChHHHHHHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCCCHHHHHHHHCCChhhHHHHHH
Confidence 999999999999999999986531 11222210 11278899999999999999874 777 699999999
Q ss_pred hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHH
Q 043190 448 SLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGAL 526 (1492)
Q Consensus 448 ~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l 526 (1492)
+|.|+++|+.+||...||...+..+.+|++||.+|+|++..||+||| +||+.++++|+++|+ |+++|+ ++++++.++
T Consensus 617 ~a~~l~~a~~~i~~~~~~~~~~~~l~~l~~rl~~gv~~e~~~L~qlp-~i~~~rar~L~~~g~~s~~~l~-~~~~~l~~~ 694 (715)
T 2va8_A 617 TMDWLTYSAYHLSRELKLNEHADKLRILNLRVRDGIKEELLELVQIS-GVGRKRARLLYNNGIKELGDVV-MNPDKVKNL 694 (715)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCGGGHHHHTST-TCCHHHHHHHHHTTCCSHHHHH-HCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHcCCChhhcchhhCC-CCCHHHHHHHHHcCCCCHHHHh-CCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999999999 999999 999999999
Q ss_pred hcCCchHHHHHH-HhccCCce
Q 043190 527 IRYTPGGRLVKQ-YLGYFPSI 546 (1492)
Q Consensus 527 ~~~~~~~~~i~~-~~~~~P~~ 546 (1492)
++ +++|++|.+ ..+++|.+
T Consensus 695 l~-~~~~~~i~~~~~~~~~~~ 714 (715)
T 2va8_A 695 LG-QKLGEKVVQEAARLLNRF 714 (715)
T ss_dssp HC-HHHHHHHHHHHHHHHC--
T ss_pred hC-hhHHHHHHHHHHHhhccC
Confidence 98 899999999 55677765
No 9
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=100.00 E-value=3.2e-56 Score=517.20 Aligned_cols=315 Identities=27% Similarity=0.503 Sum_probs=290.2
Q ss_pred CccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhcccceee-cCCCCCC
Q 043190 1168 DTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAV-DNNRLDD 1246 (1492)
Q Consensus 1168 ~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~-~~~~~~~ 1246 (1492)
+.+.||++|++||+|||++.|++.|...+++.++..++|+++|.|.||.++++|++|+..+++|++.+|+++ ++..+++
T Consensus 7 ~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~~ 86 (328)
T 3im1_A 7 EIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSGS 86 (328)
T ss_dssp CCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTTSSSCCCTTSCSSS
T ss_pred CCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHhCCCcccccCCCCC
Confidence 449999999999999999999999999999999999999999999999999999999999999999999885 3456788
Q ss_pred hhHHHHHHHHHHhcCCCCCCcchHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccC
Q 043190 1247 PHVKANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFP 1326 (1492)
Q Consensus 1247 ~~~K~~lLlqa~l~r~~l~~~~l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp 1326 (1492)
|+.|+++||||||+|+++|. +|.+|+.+|+++|.||++||+||+..+||++ +.++|+|+|||+||+|++ .+||+|||
T Consensus 87 ~~~K~~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~-~~pL~Qlp 163 (328)
T 3im1_A 87 VSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDV-DNPLRQIP 163 (328)
T ss_dssp HHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTT-SCGGGGST
T ss_pred HHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCC-CCceeCCC
Confidence 99999999999999999995 9999999999999999999999999999999 999999999999999998 89999999
Q ss_pred CCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhC--CchHHHHHHHhcCCCceEEEEEEEeccC-CCCCeEEEEEEEEec
Q 043190 1327 CMNNDLLGTLRARGISTVQQLLDIPKENLQTVIG--NFPVSRLHQDLQRFPRIQVKLRLQRRDI-DGENSLTLNIRMDKM 1403 (1492)
Q Consensus 1327 ~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~--~~~~~~i~~~~~~~P~i~i~~~~~~~~~-~~~~~~~l~v~l~~~ 1403 (1492)
||+++.+++|.++|++|++||++++++++..+++ +.+++++.+++++||.++|++++++++. .+++.++++|++++.
T Consensus 164 ~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~ 243 (328)
T 3im1_A 164 HFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLTRD 243 (328)
T ss_dssp TCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEEEEEES
T ss_pred CCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEEEEecCCCcccCCCeEEEEEEEEEC
Confidence 9999999999999999999999999999998765 4568999999999999999999977554 478999999999998
Q ss_pred cCCCCCCccccccCCCCccceEEEEEEeCCCCeEEEEEEeecCC-cceE--EEEecCCCCCcceEEEEEEeCCCCCccEE
Q 043190 1404 NSWKNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSD-RLNT--HMELPSGITTFQGMKLVVVSDCYLGFEQE 1480 (1492)
Q Consensus 1404 ~~~~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~r~~~~~-~~~~--~~~~p~~~~~~~~~~v~~~sd~y~G~D~~ 1480 (1492)
+.+ ....+|||+||+.|.|+||++|||.++|+++++||+++.+ ..++ +|.+|. +|.++|++++|||+|+|+|++
T Consensus 244 ~~~-~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~~~~~~~~f~~p~--~g~~~~~v~~vsD~ylG~d~~ 320 (328)
T 3im1_A 244 VEP-ENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKETQQYELEFDTPT--SGKHNLTIWCVCDSYLDADKE 320 (328)
T ss_dssp SCC-SCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSSEEEEEEEEECCC--SEEEEEEEEEEESSCSSCCEE
T ss_pred CCC-CCCcEECCCCCCCccCCEEEEEEECCCCeEEEEeeecccccceEEEEEEEcCC--CCcEEEEEEEEecCCcceeEE
Confidence 743 4467999999999999999999999999999999999875 3344 444665 589999999999999999999
Q ss_pred EEEEEEEe
Q 043190 1481 HSIEALVE 1488 (1492)
Q Consensus 1481 ~~i~~~v~ 1488 (1492)
++|+++|.
T Consensus 321 ~~~~l~V~ 328 (328)
T 3im1_A 321 LSFEINVK 328 (328)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999984
No 10
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=100.00 E-value=1.6e-55 Score=512.99 Aligned_cols=315 Identities=30% Similarity=0.622 Sum_probs=264.4
Q ss_pred cccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhHHHHHhhcccceeecCCCCCChhH
Q 043190 1170 VEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDNHNEALSQRVRFAVDNNRLDDPHV 1249 (1492)
Q Consensus 1170 ~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~~~~~~~~~ 1249 (1492)
+.||++|++||+|||++.|++.|...+++.++..++|++||.|.||.++++|++|+..+++|++.+|++++...+++|+.
T Consensus 13 l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~~~~~~~~~~~~~~~~ 92 (339)
T 2q0z_X 13 VAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHV 92 (339)
T ss_dssp ------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHHSSSCCSSCCTTCHHH
T ss_pred eccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHhCCCccccCCCCCHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999887667889999
Q ss_pred HHHHHHHHHhcCCCCCCcchHhhHHHHHHhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcccCCCCcccccCCCC
Q 043190 1250 KANLLFQAHFSRLDLPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSSITCMHLLQMVMQGLWFEQDSALWMFPCMN 1329 (1492)
Q Consensus 1250 K~~lLlqa~l~r~~l~~~~l~~D~~~il~~~~rl~~a~~~i~~~~~~~~~~~~~l~l~q~i~q~~w~~~~~~L~qlp~i~ 1329 (1492)
|+++||||||+|+++| .+|.+|+.+|+++|.||++||+||+..+||++++.++|+|+|||+||+|++ .+||+|||||+
T Consensus 93 K~~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~-~~pL~Qlp~i~ 170 (339)
T 2q0z_X 93 KTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSK-DSYLKQLPHFT 170 (339)
T ss_dssp HHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTT-SCGGGGSTTCC
T ss_pred HHHHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCC-CCceecCCCCC
Confidence 9999999999999999 799999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHHHhCCCCCHHHHhcCCHHHHhhhhC--CchHHHHHHHhcCCCceEEEEEEEeccC-CCCCeEEEEEEEEeccCC
Q 043190 1330 NDLLGTLRARGISTVQQLLDIPKENLQTVIG--NFPVSRLHQDLQRFPRIQVKLRLQRRDI-DGENSLTLNIRMDKMNSW 1406 (1492)
Q Consensus 1330 ~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~--~~~~~~i~~~~~~~P~i~i~~~~~~~~~-~~~~~~~l~v~l~~~~~~ 1406 (1492)
++.+++|+++|++|+++|.+++++++..+++ +.+++++.+++++||.++|++++++++. ..++.++++|++++.+
T Consensus 171 ~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~~-- 248 (339)
T 2q0z_X 171 SEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLEREE-- 248 (339)
T ss_dssp HHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEECS--
T ss_pred HHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEEEEEccCccccCCCcEEEEEEEEECC--
Confidence 9999999999999999999999999998876 4468999999999999999999887654 4688999999999975
Q ss_pred CCCCccccccCCCCccceEEEEEEeCCCCeEEEEEEeecCCcce--EEEEecCCCCCcceEEEEEEeCCCCCccEEEEEE
Q 043190 1407 KNTSRAFALRFPKIKDEAWWLVLGNTNTSELYALKRISFSDRLN--THMELPSGITTFQGMKLVVVSDCYLGFEQEHSIE 1484 (1492)
Q Consensus 1407 ~~~~~~~~p~~p~~k~e~w~~~v~d~~~~~l~~~~r~~~~~~~~--~~~~~p~~~~~~~~~~v~~~sd~y~G~D~~~~i~ 1484 (1492)
+....+|||+||+.|.|+||++|||.++|+|+.++|+++.+... .+|.+| . +|.++|+|++|||+|+|+|++++|.
T Consensus 249 ~~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~~~~~~l~f~~P-~-~g~~~~~v~~vSD~ylG~D~~~~i~ 326 (339)
T 2q0z_X 249 EVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAP-A-TGAHNYTLYFMSDAYMGCDQEYKFS 326 (339)
T ss_dssp SCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSEEEEEEEEECC-S-SEEEEEEEEEEESSCSSCCEEEEEE
T ss_pred CCCCceeCCCCCCCCCCcEEEEEEECCCCEEEEEEEEecccceEEEEEEECC-C-CCCeeEEEEEEcccccCcceEEEEE
Confidence 34567999999999999999999999999999999999877644 566688 3 6999999999999999999999999
Q ss_pred EEEecc
Q 043190 1485 ALVEQS 1490 (1492)
Q Consensus 1485 ~~v~~~ 1490 (1492)
++|++.
T Consensus 327 ~~v~~~ 332 (339)
T 2q0z_X 327 VDVKEA 332 (339)
T ss_dssp EEEBCC
T ss_pred EEEecC
Confidence 999754
No 11
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=100.00 E-value=1.5e-48 Score=452.69 Aligned_cols=306 Identities=17% Similarity=0.338 Sum_probs=280.2
Q ss_pred CCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHHHHHHhcCCcccc--cCCC
Q 043190 336 SGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEV--KGGP 413 (1492)
Q Consensus 336 ~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~~l~~~~~~~~~--~~~~ 413 (1492)
++.+.||++|++||+|||++.|+..|.+.+++.++..++|+++|.|+||+++++|++|+.++.+|+.+ +|+++ ++..
T Consensus 6 ~~~l~~t~lG~iaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~Ef~~i~vR~~E~~~l~~L~~~-~~~~~~~~~~~ 84 (328)
T 3im1_A 6 TEIISTLSNGLIASHYGVSFFTIQSFVSSLSNTSTLKNMLYVLSTAVEFESVPLRKGDRALLVKLSKR-LPLRFPEHTSS 84 (328)
T ss_dssp CCCCTTSSSCBCCCCCCCCHHHHHHHHHHCCTTCCHHHHHHHHHTCGGGGGSCCCTTHHHHHHHHHTT-SSSCCCTTSCS
T ss_pred CCCccCCchhHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHhccHHHHHhcccCcchHHHHHHHHHh-CCCcccccCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999 88876 5566
Q ss_pred CChhHHHHHHHHHHHcCCCCCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccc
Q 043190 414 SNKHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQF 493 (1492)
Q Consensus 414 ~~~~~K~~~Llqa~i~~~~~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql 493 (1492)
..++.|+++||||||+|++++. ++.+|+.+|+++|.||++||+|||..+||+. +.++++|+|||.||+|++++||+||
T Consensus 85 ~~~~~K~~lLLqa~isr~~l~~-~l~~D~~~V~~~a~rLl~al~di~~~~g~~~-~~~~l~L~q~i~q~~w~~~~pL~Ql 162 (328)
T 3im1_A 85 GSVSFKVFLLLQAYFSRLELPV-DFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLRQI 162 (328)
T ss_dssp SSHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTBTT-HHHHHHHHHHHHHTSCTTSCGGGGS
T ss_pred CCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHhhcCCCCCceeCC
Confidence 7899999999999999999987 8999999999999999999999999999999 9999999999999999999999999
Q ss_pred cccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccCCceeEEEEEee---c-ccceEEEEEEEe
Q 043190 494 DKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYFPSIQLSATVSP---I-TRTVLKIGLAIT 567 (1492)
Q Consensus 494 ~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~P~~~i~~~~~~---~-~~~~~~i~~~~~ 567 (1492)
| |||++.+++|+++|+ |+++|.++++++++++++ ++++++++.+++++||++++++.+++ + +++.+++.|+++
T Consensus 163 p-~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~~~~~~~~~v~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~ 241 (328)
T 3im1_A 163 P-HFNNKILEKCKEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVELTYSLNNSDSLISGVKQKITIQLT 241 (328)
T ss_dssp T-TCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHCCCCHHHHHHHHHHHHHCCCEEEEEEETTGGGCCTTSEEEEEEEEE
T ss_pred C-CCCHHHHHHHHhCCCCCHHHHhcCCHHHHHhHhCCCHHHHHHHHHHHHhCCCEEEEEEecCCCcccCCCeEEEEEEEE
Confidence 9 999999999999999 999999999999999998 77899999999999999999999975 6 578999999999
Q ss_pred cCCcccC------Cc-CCcccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEEEEEeeccCCCCCcceeeeccCcccc
Q 043190 568 PEFTWKD------HF-HGAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLH 640 (1492)
Q Consensus 568 ~~f~~~~------~~-h~~~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v~~~ip~~~p~p~~~~v~~~Sd~wl~ 640 (1492)
++|.|+. ++ |++.|+||+||+|.+++++++.+++++.+. .+.+.+.++...|.+++|.++++||+|+|
T Consensus 242 ~~~~~~~~~~~ap~fp~~k~e~ww~~v~d~~~~~l~~~kr~~~~~~-----~~~~~~~f~~p~~g~~~~~v~~vsD~ylG 316 (328)
T 3im1_A 242 RDVEPENLQVTSEKYPFDKLESWWLVLGEVSKKELYAIKKVTLNKE-----TQQYELEFDTPTSGKHNLTIWCVCDSYLD 316 (328)
T ss_dssp ESSCCSCCBCCCSSCCBCCBCCEEEEEEEGGGTEEEEEEEECCCSS-----EEEEEEEEECCCSEEEEEEEEEEESSCSS
T ss_pred ECCCCCCCcEECCCCCCCccCCEEEEEEECCCCeEEEEeeeccccc-----ceEEEEEEEcCCCCcEEEEEEEEecCCcc
Confidence 9998853 44 688999999999999999999999888642 33444444444467789999999999999
Q ss_pred cceeEEeccc
Q 043190 641 AEAFYCISFH 650 (1492)
Q Consensus 641 ~~~~~~i~~~ 650 (1492)
++...++.+.
T Consensus 317 ~d~~~~~~l~ 326 (328)
T 3im1_A 317 ADKELSFEIN 326 (328)
T ss_dssp CCEEEEEEEE
T ss_pred eeEEEEEEEE
Confidence 9998887653
No 12
>2q0z_X Protein Pro2281; SEC63, SEC, NESG, HR1979, structural genomics, translocase, northeast structural genomics consortium, PSI-2; 2.00A {Homo sapiens} SCOP: a.289.1.1 b.1.18.22
Probab=100.00 E-value=2e-48 Score=453.27 Aligned_cols=307 Identities=24% Similarity=0.414 Sum_probs=253.9
Q ss_pred CceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhHHHHHHHHHhcCCccccc-CCCCC
Q 043190 337 GNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEEQNELETLVQTLCPVEVK-GGPSN 415 (1492)
Q Consensus 337 ~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e~~~l~~l~~~~~~~~~~-~~~~~ 415 (1492)
|.+.||++|+|||+|||++.|+..|.+.+++.++..++|+++|.|+||+++++|.+|+.++.+|++. +|++++ ...+.
T Consensus 11 g~l~~t~lGriaS~yYi~~~T~~~f~~~l~~~~~~~~lL~ils~a~EF~~i~vR~~E~~~l~~L~~~-~~~~~~~~~~~~ 89 (339)
T 2q0z_X 11 MDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPIRHHEDNLLRQLAQK-VPHKLNNPKFND 89 (339)
T ss_dssp --------------------------------CCHHHHHHHHHTSGGGTTCCCCTTCHHHHHHHHHH-SSSCCSSCCTTC
T ss_pred ceeccCcHHHHHHHHCCCHHHHHHHHHHhcccCCHHHHHHHHhchHHHhcCCCCcchHHHHHHHHHh-CCCccccCCCCC
Confidence 6789999999999999999999999999999999999999999999999999999999999999998 888885 35778
Q ss_pred hhHHHHHHHHHHHcCCCCCCchhHhhHHHHHHhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCCCCcccccccc
Q 043190 416 KHGKISILIQLYISRGWIDTFSLVSDAAYISASLARIMRALFETCLRRGWCEMSLFMLEYCKAVDRQIWPHQHPLRQFDK 495 (1492)
Q Consensus 416 ~~~K~~~Llqa~i~~~~~~~~~l~~d~~~i~~~~~rl~~al~ei~~~~~~~~~~~~~~~l~~~i~~~~w~~~~~L~Ql~~ 495 (1492)
++.|+++||||||+|++++ .+|.+|+.+|+++|.||++||+||+..+||+.++.++++|+|||.||+|++++||+|||
T Consensus 90 ~~~K~~lLLqa~isr~~l~-~~l~~D~~~V~~~a~RLl~al~di~~~~g~~~~~~~~l~L~q~i~q~~w~~~~pL~Qlp- 167 (339)
T 2q0z_X 90 PHVKTNLLLQAHLSRMQLS-AELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLP- 167 (339)
T ss_dssp HHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHHHTCCTTSCGGGGST-
T ss_pred HHHHHHHHHHHHHcCCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCceecCC-
Confidence 9999999999999999998 58999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccCCceeEEEEEee---c-ccceEEEEEEEecC
Q 043190 496 ELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYFPSIQLSATVSP---I-TRTVLKIGLAITPE 569 (1492)
Q Consensus 496 ~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~P~~~i~~~~~~---~-~~~~~~i~~~~~~~ 569 (1492)
+||++.+++|+++|+ |+++|.++++++++.+++ ++++++++.+++++||++++++.++| + +++.++++|+++++
T Consensus 168 ~i~~~~~~~l~~~~i~s~~~l~~~~~~e~~~ll~l~~~~~~~i~~~~~~~P~l~v~~~v~~~~~i~~~~~~~l~v~l~~~ 247 (339)
T 2q0z_X 168 HFTSEHIKRCTDKGVESVFDIMEMEDEERNALLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQLERE 247 (339)
T ss_dssp TCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHCCCHHHHHHHHHHHTTSCCEEEEEEETTGGGCBTTSEEEEEEEEEEC
T ss_pred CCCHHHHHHHHhcCCCCHHHHHhCCHHHHHHHHCCCHHHHHHHHHHHHhCCcEEEEEEEccCccccCCCcEEEEEEEEEC
Confidence 999999999999998 999999999999999999 67789999999999999999999986 5 47899999999998
Q ss_pred CcccCCcC------CcccEEEEEEEcCCCCeeEEEeeeeeeecccCCcceEEEEEeeccCCCCCcceeeeccCcccccce
Q 043190 570 FTWKDHFH------GAAQRWWIIVQDSESDHIYHSELFTLTKRMARGETQKLSFTVPIFEPHPPQYYIRAVSDSWLHAEA 643 (1492)
Q Consensus 570 f~~~~~~h------~~~e~~~i~v~d~~~~~i~~~~~~~l~~~~~~~~~~~v~~~ip~~~p~p~~~~v~~~Sd~wl~~~~ 643 (1492)
+.|+...| ++.|+||+||+|.++++|++++++++.++ ....++|++| .|.+++|.++++||+|+|++.
T Consensus 248 ~~~~~~v~aP~fp~~k~e~wwi~v~d~~~~~ll~~~r~~l~~~----~~~~l~f~~P--~~g~~~~~v~~vSD~ylG~D~ 321 (339)
T 2q0z_X 248 EEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQK----AKVKLDFVAP--ATGAHNYTLYFMSDAYMGCDQ 321 (339)
T ss_dssp SSCCSSCCCTTCSSCCCCCEEEEEEETTTTEEEEEEEECCSSE----EEEEEEEECC--SSEEEEEEEEEEESSCSSCCE
T ss_pred CCCCCceeCCCCCCCCCCcEEEEEEECCCCEEEEEEEEecccc----eEEEEEEECC--CCCCeeEEEEEEcccccCcce
Confidence 77765544 46899999999999999999999988754 2567889998 578899999999999999999
Q ss_pred eEEeccccc
Q 043190 644 FYCISFHNL 652 (1492)
Q Consensus 644 ~~~i~~~~~ 652 (1492)
..++++.-.
T Consensus 322 ~~~i~~~v~ 330 (339)
T 2q0z_X 322 EYKFSVDVK 330 (339)
T ss_dssp EEEEEEEEB
T ss_pred EEEEEEEEe
Confidence 999987643
No 13
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-41 Score=447.29 Aligned_cols=387 Identities=24% Similarity=0.382 Sum_probs=284.0
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
++| .|+|+|.++++.+. .+++++++||||||||++|++|++..+.. +++++|++|+++|+.|+++++.+.++
T Consensus 181 ~~f-~ltp~Q~~AI~~i~-~g~dvLV~ApTGSGKTlva~l~i~~~l~~--g~rvlvl~PtraLa~Q~~~~l~~~~~---- 252 (1108)
T 3l9o_A 181 YPF-TLDPFQDTAISCID-RGESVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAEFG---- 252 (1108)
T ss_dssp CSS-CCCHHHHHHHHHHT-TTCCEEEECCSSSHHHHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHTS----
T ss_pred CCC-CCCHHHHHHHHHHH-cCCCEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEcCcHHHHHHHHHHHHHHhC----
Confidence 344 49999999999987 78999999999999999999999998864 78999999999999999999988763
Q ss_pred CEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhcc
Q 043190 764 KEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~ 842 (1492)
.++.++|+.... .+++|+|+|||+|..++.+. ...++++++|||||||++.+ +++..++.++..+
T Consensus 253 -~VglltGd~~~~----~~~~IlV~Tpe~L~~~L~~~--~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l------- 318 (1108)
T 3l9o_A 253 -DVGLMTGDITIN----PDAGCLVMTTEILRSMLYRG--SEVMREVAWVIFDEVHYMRDKERGVVWEETIILL------- 318 (1108)
T ss_dssp -SEEEECSSCBCC----CSCSEEEEEHHHHHHHHHHC--SSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS-------
T ss_pred -CccEEeCccccC----CCCCEEEeChHHHHHHHHcC--ccccccCCEEEEhhhhhccccchHHHHHHHHHhc-------
Confidence 578899987643 46899999999998877763 33478999999999999876 6788887776543
Q ss_pred CCceEEEEEcCCCCChHHHHHHhcCCcc-eeEecCCCccccCcEEEEeccCCccccccc---------------ccc---
Q 043190 843 ERAVRFIGLSTALANAGDLADWLGVGEI-GLFNFKPSVRPVPLEVHIQGYPGKFYCPRM---------------NSM--- 903 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~~~~~~~~l~~~~~-~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~---------------~~~--- 903 (1492)
+...++|+||||+++..+++.|++.... ....+....+++++...+............ ..+
T Consensus 319 ~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~ 398 (1108)
T 3l9o_A 319 PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQ 398 (1108)
T ss_dssp CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC---
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhh
Confidence 4689999999999999999999875321 233345567778876655322111100000 000
Q ss_pred ---------------------------ChhHHHHH--hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcc----c
Q 043190 904 ---------------------------NKPAYAAI--CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQ----F 950 (1492)
Q Consensus 904 ---------------------------~~~~~~~l--~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~----~ 950 (1492)
.......+ ......+++||||++++.|+.++..|............ +
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~ 478 (1108)
T 3l9o_A 399 IGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKI 478 (1108)
T ss_dssp --------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHH
T ss_pred hcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 00111111 12245679999999999999999887543222111000 0
Q ss_pred CCCChHHHHHHHhhc-CcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEeccee
Q 043190 951 LGMPEEDLQMVLSQV-TDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEY 1029 (1492)
Q Consensus 951 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~ 1029 (1492)
.......+...-..+ ....+...+..||++|||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+....
T Consensus 479 ~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~ 558 (1108)
T 3l9o_A 479 FNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRK 558 (1108)
T ss_dssp GGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEE
T ss_pred HHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcc
Confidence 000000000000000 1134556778899999999999999999999999999999999999999999999999998888
Q ss_pred eeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC-cHHHHHHhh-cCCCceeecccccch
Q 043190 1030 YDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP-KKSFYKKFL-YEPFPVESSLRDQLH 1094 (1492)
Q Consensus 1030 ~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~-~~~~~~~~l-~~~~pies~l~~~l~ 1094 (1492)
|++... .+++..+|+||+|||||.|.|..|.|++++.+. ....+.+++ ..+.|+.|.+.....
T Consensus 559 ~d~~~~--r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~ 623 (1108)
T 3l9o_A 559 WDGQQF--RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYN 623 (1108)
T ss_dssp ESSSCE--EECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHH
T ss_pred cCcccc--ccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHH
Confidence 887654 467899999999999999999999999999876 445566666 456788888866433
No 14
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-40 Score=435.71 Aligned_cols=380 Identities=26% Similarity=0.412 Sum_probs=283.7
Q ss_pred hhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 682 ALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
..++|. |+|+|.++++.+. .+++++++||||||||++|+++++..+.. +.+++|++|+++|+.|+++++.+.++
T Consensus 81 ~~~~f~-L~~~Q~eai~~l~-~g~~vLV~apTGSGKTlva~lai~~~l~~--g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 81 RTYPFT-LDPFQDTAISCID-RGESVLVSAHTSAGKTVVAEYAIAQSLKN--KQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp CCCSSC-CCHHHHHHHHHHH-HTCEEEEECCTTSCHHHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred HhCCCC-CCHHHHHHHHHHH-cCCCEEEECCCCCChHHHHHHHHHHHhcc--CCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 345776 9999999999987 68899999999999999999999988764 78999999999999999999988763
Q ss_pred cCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhh
Q 043190 762 LGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISS 840 (1492)
Q Consensus 762 ~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~ 840 (1492)
+++.++|+.... .+++|+|+|||+|..++.++ ...++++++|||||||.+.+ ++|..++.++..+
T Consensus 155 ---~vglltGd~~~~----~~~~IvV~Tpe~L~~~L~~~--~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l----- 220 (1010)
T 2xgj_A 155 ---DVGLMTGDITIN----PDAGCLVMTTEILRSMLYRG--SEVMREVAWVIFDEVHYMRDKERGVVWEETIILL----- 220 (1010)
T ss_dssp ---CEEEECSSCEEC----TTCSEEEEEHHHHHHHHHHT--CTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHS-----
T ss_pred ---CEEEEeCCCccC----CCCCEEEEcHHHHHHHHHcC--cchhhcCCEEEEechhhhcccchhHHHHHHHHhc-----
Confidence 688899987644 36799999999998877653 34588999999999999865 5888888776543
Q ss_pred ccCCceEEEEEcCCCCChHHHHHHhcCCc-ceeEecCCCccccCcEEEEeccCCc-ccc--cc------------cccc-
Q 043190 841 QTERAVRFIGLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGK-FYC--PR------------MNSM- 903 (1492)
Q Consensus 841 ~~~~~~~ii~lSATl~~~~~~~~~l~~~~-~~~~~~~~~~r~~~l~~~~~~~~~~-~~~--~~------------~~~~- 903 (1492)
+...++|+||||++|..++++|++... .....+....+|+++...+...... .+. .. ...+
T Consensus 221 --~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 298 (1010)
T 2xgj_A 221 --PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 298 (1010)
T ss_dssp --CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC
T ss_pred --CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHh
Confidence 458999999999999999999986321 1223334456777776655432100 000 00 0000
Q ss_pred -----------------------------ChhHHHHHh--hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCC
Q 043190 904 -----------------------------NKPAYAAIC--THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG 952 (1492)
Q Consensus 904 -----------------------------~~~~~~~l~--~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~ 952 (1492)
.......+. ......++||||++++.|+.++..|.... +..
T Consensus 299 ~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~--------~~~ 370 (1010)
T 2xgj_A 299 NQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD--------FNS 370 (1010)
T ss_dssp ------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSC--------CCC
T ss_pred hhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC--------CCC
Confidence 000111111 12245689999999999999998773310 000
Q ss_pred CC-hHHHH----HHHhhcC--------cHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCC
Q 043190 953 MP-EEDLQ----MVLSQVT--------DQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPA 1019 (1492)
Q Consensus 953 ~~-~~~~~----~~~~~~~--------~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~ 1019 (1492)
.. ...+. .....+. ...+...+..+|++|||+|++.+|..+++.|++|.++|||||+++++|||+|+
T Consensus 371 ~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~ 450 (1010)
T 2xgj_A 371 DDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPA 450 (1010)
T ss_dssp HHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCB
T ss_pred hHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCC
Confidence 00 00011 1111111 13455677889999999999999999999999999999999999999999999
Q ss_pred cEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC-cHHHHHHhh-cCCCceeecccccc
Q 043190 1020 HLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP-KKSFYKKFL-YEPFPVESSLRDQL 1093 (1492)
Q Consensus 1020 ~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~-~~~~~~~~l-~~~~pies~l~~~l 1093 (1492)
+++||++...||+... .+.+..+|.||+|||||.|.|..|.|++++++. +...+.+++ ..+.|++|.+....
T Consensus 451 ~~vVI~~~~kfd~~~~--rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~ 524 (1010)
T 2xgj_A 451 KTVVFTSVRKWDGQQF--RWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGY 524 (1010)
T ss_dssp SEEEESCSEEECSSCE--EECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCH
T ss_pred ceEEEeCCcccCCcCC--ccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcH
Confidence 9999999988987543 467899999999999999988899999999876 556667765 45667888876543
No 15
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=8.3e-40 Score=416.50 Aligned_cols=359 Identities=18% Similarity=0.259 Sum_probs=265.5
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhc-CCCcEEEecCCCCCchHHHHHHHHHHhccCC-----CceEEEEcccHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYH-TDNNVLLGAPTGSGKTISAELAMLHLFNTQS-----DMKVVYIAPLKAI 746 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~-~~~~vli~apTGsGKT~~~~l~il~~l~~~~-----~~~~l~i~P~r~L 746 (1492)
|+.+..+.+. ||..|+|+|.++++.++. .+++++++||||||||++|++|+++.+...+ +.++||++|+++|
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~L 158 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 158 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHH
Confidence 4455555543 899999999999999985 3689999999999999999999999876532 3589999999999
Q ss_pred HHHHHHHHHHHhhhc---cCCEEEEEcCCCCcchhc----cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccc
Q 043190 747 VRERMNDWKDRLVSQ---LGKEMVEMTGDYTPDLMA----LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHL 819 (1492)
Q Consensus 747 a~q~~~~~~~~~~~~---~g~~v~~~~g~~~~~~~~----~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~ 819 (1492)
|.|+++.+.+.+... .+..+..+.|+....... ..+++|+|+||+++..++.+. ....++++++|||||||+
T Consensus 159 a~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 159 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhc-cccccccceEEEEeCHHH
Confidence 999999998865432 245577777776533211 237899999999998777653 223578899999999998
Q ss_pred cCC-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHHHhcCCcceeE-ecCCCcccc---CcEEEEeccCC
Q 043190 820 LGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLADWLGVGEIGLF-NFKPSVRPV---PLEVHIQGYPG 893 (1492)
Q Consensus 820 l~~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~-~~~~~~r~~---~l~~~~~~~~~ 893 (1492)
+.+ .+++.++.++..+.........+.|++++|||+++. ..+..++...+..++ .......+. .+.........
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 764 588899999998887665556688999999999883 555555544332222 111111111 11111110000
Q ss_pred ccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHH
Q 043190 894 KFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQT 973 (1492)
Q Consensus 894 ~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 973 (1492)
...........+...+.....++++||||+|++.|+.++..|.+...
T Consensus 318 --~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~------------------------------- 364 (563)
T 3i5x_A 318 --FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------------------------------- 364 (563)
T ss_dssp --TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT-------------------------------
T ss_pred --hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc-------------------------------
Confidence 00000011111223334446778999999999999999988865421
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccC
Q 043190 974 LQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAG 1053 (1492)
Q Consensus 974 ~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRag 1053 (1492)
.+..+..+||+|++.+|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|+||+||||
T Consensus 365 ~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~------p~s~~~y~Qr~GRag 434 (563)
T 3i5x_A 365 KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGV------PSELANYIHRIGRTA 434 (563)
T ss_dssp TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESC------CSSTTHHHHHHTTSS
T ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE----ECC------CCchhhhhhhcCccc
Confidence 1467899999999999999999999999999999999999999999999998 543 235889999999999
Q ss_pred CCCCCCceEEEEEecCCcHHHHHHhh
Q 043190 1054 RPQYDQHGKAVILVHEPKKSFYKKFL 1079 (1492)
Q Consensus 1054 R~g~~~~G~~i~l~~~~~~~~~~~~l 1079 (1492)
|.| ..|.|++++.+.+...+..+.
T Consensus 435 R~g--~~g~~i~~~~~~e~~~~~~l~ 458 (563)
T 3i5x_A 435 RSG--KEGSSVLFICKDELPFVRELE 458 (563)
T ss_dssp CTT--CCEEEEEEEEGGGHHHHHHHH
T ss_pred cCC--CCceEEEEEchhHHHHHHHHH
Confidence 987 889999999998888777765
No 16
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=2.7e-39 Score=395.50 Aligned_cols=330 Identities=17% Similarity=0.217 Sum_probs=242.9
Q ss_pred cCchhHhhh--cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC------CCceEEEEcccHHH
Q 043190 675 LGNNIYEAL--YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ------SDMKVVYIAPLKAI 746 (1492)
Q Consensus 675 l~~~~~~~~--~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~------~~~~~l~i~P~r~L 746 (1492)
|+....+.+ .||..|+|+|.++++.++ ++++++++||||||||++|++|++..+... .+.++||++|||+|
T Consensus 63 l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~-~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreL 141 (434)
T 2db3_A 63 LRDIIIDNVNKSGYKIPTPIQKCSIPVIS-SGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTREL 141 (434)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHH
Confidence 444445544 399999999999999998 789999999999999999999999887543 25699999999999
Q ss_pred HHHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-
Q 043190 747 VRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA- 822 (1492)
Q Consensus 747 a~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~- 822 (1492)
|.|+++++.+. ....+.++..++|+...... ...+++|+|+||+++..++.+.. ..+++++++|+||||++.+
T Consensus 142 a~Q~~~~~~~~-~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~--~~l~~~~~lVlDEah~~~~~ 218 (434)
T 2db3_A 142 AIQIFNEARKF-AFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTF--ITFEDTRFVVLDEADRMLDM 218 (434)
T ss_dssp HHHHHHHHHHH-TTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTS--CCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHH-hccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCC--cccccCCeEEEccHhhhhcc
Confidence 99999999874 44447888888888764322 23578999999999988877633 3478999999999998754
Q ss_pred CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHH-HhcCCcceeEecCCC-ccccCcEEEEeccCCcccccc
Q 043190 823 ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLAD-WLGVGEIGLFNFKPS-VRPVPLEVHIQGYPGKFYCPR 899 (1492)
Q Consensus 823 ~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~-~l~~~~~~~~~~~~~-~r~~~l~~~~~~~~~~~~~~~ 899 (1492)
.++..+..++..+. .....|++++|||+++. ..++. ++. ... .+..... .....+...+.....
T Consensus 219 gf~~~~~~i~~~~~-----~~~~~q~l~~SAT~~~~~~~~~~~~l~-~~~-~i~~~~~~~~~~~i~~~~~~~~~------ 285 (434)
T 2db3_A 219 GFSEDMRRIMTHVT-----MRPEHQTLMFSATFPEEIQRMAGEFLK-NYV-FVAIGIVGGACSDVKQTIYEVNK------ 285 (434)
T ss_dssp TTHHHHHHHHHCTT-----SCSSCEEEEEESCCCHHHHHHHHTTCS-SCE-EEEESSTTCCCTTEEEEEEECCG------
T ss_pred CcHHHHHHHHHhcC-----CCCCceEEEEeccCCHHHHHHHHHhcc-CCE-EEEeccccccccccceEEEEeCc------
Confidence 45555555554321 24578999999999752 33332 332 111 1111111 111112222111110
Q ss_pred ccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceE
Q 043190 900 MNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIG 979 (1492)
Q Consensus 900 ~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 979 (1492)
......+...+... ..++||||++++.|+.++..|.+ .++.+.
T Consensus 286 -~~k~~~l~~~l~~~--~~~~lVF~~t~~~a~~l~~~L~~----------------------------------~~~~~~ 328 (434)
T 2db3_A 286 -YAKRSKLIEILSEQ--ADGTIVFVETKRGADFLASFLSE----------------------------------KEFPTT 328 (434)
T ss_dssp -GGHHHHHHHHHHHC--CTTEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEE
T ss_pred -HHHHHHHHHHHHhC--CCCEEEEEeCcHHHHHHHHHHHh----------------------------------CCCCEE
Confidence 00011122333332 23499999999999999987743 256789
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCC
Q 043190 980 LHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQ 1059 (1492)
Q Consensus 980 ~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~ 1059 (1492)
.+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| .
T Consensus 329 ~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~----~d~------p~~~~~y~qriGR~gR~g--~ 396 (434)
T 2db3_A 329 SIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN----YDM------PSKIDDYVHRIGRTGRVG--N 396 (434)
T ss_dssp EESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE----SSC------CSSHHHHHHHHTTSSCTT--C
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE----ECC------CCCHHHHHHHhcccccCC--C
Confidence 9999999999999999999999999999999999999999999998 443 336899999999999998 8
Q ss_pred ceEEEEEecCC
Q 043190 1060 HGKAVILVHEP 1070 (1492)
Q Consensus 1060 ~G~~i~l~~~~ 1070 (1492)
.|.|++|+.+.
T Consensus 397 ~G~a~~~~~~~ 407 (434)
T 2db3_A 397 NGRATSFFDPE 407 (434)
T ss_dssp CEEEEEEECTT
T ss_pred CCEEEEEEecc
Confidence 99999999854
No 17
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=8.2e-39 Score=422.17 Aligned_cols=379 Identities=26% Similarity=0.425 Sum_probs=285.5
Q ss_pred hcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc
Q 043190 683 LYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762 (1492)
Q Consensus 683 ~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~ 762 (1492)
.|+|+ |+|+|.++++.++ .+++++++||||||||++|++++...+.. +.+++|++|+++|+.|+++++.+.+.
T Consensus 35 ~~~f~-l~~~Q~~aI~~il-~g~~vlv~apTGsGKTlv~~~~i~~~~~~--g~~vlvl~PtraLa~Q~~~~l~~~~~--- 107 (997)
T 4a4z_A 35 SWPFE-LDTFQKEAVYHLE-QGDSVFVAAHTSAGKTVVAEYAIAMAHRN--MTKTIYTSPIKALSNQKFRDFKETFD--- 107 (997)
T ss_dssp CCSSC-CCHHHHHHHHHHH-TTCEEEEECCTTSCSHHHHHHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred hCCCC-CCHHHHHHHHHHH-cCCCEEEEECCCCcHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHcC---
Confidence 34666 8999999999998 78999999999999999999999887654 78999999999999999999887543
Q ss_pred CCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhc
Q 043190 763 GKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQ 841 (1492)
Q Consensus 763 g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~ 841 (1492)
+.+++.++|+...+ ..++|+|+|||++...+.. ....++++++|||||||++.+ +++..++.++..+
T Consensus 108 ~~~v~~l~G~~~~~----~~~~IlV~Tpe~L~~~l~~--~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l------ 175 (997)
T 4a4z_A 108 DVNIGLITGDVQIN----PDANCLIMTTEILRSMLYR--GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIML------ 175 (997)
T ss_dssp -CCEEEECSSCEEC----TTSSEEEEEHHHHHHHHHH--TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHS------
T ss_pred CCeEEEEeCCCccC----CCCCEEEECHHHHHHHHHh--CchhhcCCCEEEEECcccccccchHHHHHHHHHhc------
Confidence 67899999987543 4589999999999777765 334578999999999998865 6899888877643
Q ss_pred cCCceEEEEEcCCCCChHHHHHHhcCCc-ceeEecCCCccccCcEEEEeccCCcc--------ccc--------------
Q 043190 842 TERAVRFIGLSTALANAGDLADWLGVGE-IGLFNFKPSVRPVPLEVHIQGYPGKF--------YCP-------------- 898 (1492)
Q Consensus 842 ~~~~~~ii~lSATl~~~~~~~~~l~~~~-~~~~~~~~~~r~~~l~~~~~~~~~~~--------~~~-------------- 898 (1492)
+...++|++|||++|..++++|++... ..++.+....+++|+...+....... +..
T Consensus 176 -~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (997)
T 4a4z_A 176 -PQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGES 254 (997)
T ss_dssp -CTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---
T ss_pred -ccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccc
Confidence 457999999999999999999998543 45566677888888876553211000 000
Q ss_pred --------------------------cc----------------------------------cccChhHHHH---HhhcC
Q 043190 899 --------------------------RM----------------------------------NSMNKPAYAA---ICTHS 915 (1492)
Q Consensus 899 --------------------------~~----------------------------------~~~~~~~~~~---l~~~~ 915 (1492)
+. ....+..+.. .....
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~ 334 (997)
T 4a4z_A 255 AKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR 334 (997)
T ss_dssp --------------------------------------------------------------CCCCTTHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC
Confidence 00 0001111111 12234
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCC-ChHHH----HHHHhhcC--------cHHHHHHhccceEeec
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGM-PEEDL----QMVLSQVT--------DQNLRQTLQFGIGLHH 982 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~--------~~~l~~~~~~~v~~~h 982 (1492)
...++||||+|++.|+.++..|.... +... ....+ .+....+. ...+...+..++++||
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~--------~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H 406 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGIN--------FCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHH 406 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCC--------CCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCC--------CCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeec
Confidence 56799999999999999988773210 0000 00111 11111121 1346677888999999
Q ss_pred CCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceE
Q 043190 983 AGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGK 1062 (1492)
Q Consensus 983 ~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~ 1062 (1492)
|+|++.+|..+++.|++|.++|||||+++++|+|+|++.+|+.+...||+... .+++..+|.||+|||||.|.+..|.
T Consensus 407 ~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~--~~~s~~~y~Qr~GRAGR~G~~~~G~ 484 (997)
T 4a4z_A 407 GGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGL--RELTPGEFTQMAGRAGRRGLDSTGT 484 (997)
T ss_dssp TTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEE--EECCHHHHHHHHGGGCCTTTCSSEE
T ss_pred CCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccC--CCCCHHHHhHHhcccccCCCCcceE
Confidence 99999999999999999999999999999999999999999988888887643 6789999999999999999999999
Q ss_pred EEEEec--CCcHHHHHHhh-cCCCceeecccc
Q 043190 1063 AVILVH--EPKKSFYKKFL-YEPFPVESSLRD 1091 (1492)
Q Consensus 1063 ~i~l~~--~~~~~~~~~~l-~~~~pies~l~~ 1091 (1492)
|++++. ..+...+.+++ ..+.+++|.+..
T Consensus 485 vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~ 516 (997)
T 4a4z_A 485 VIVMAYNSPLSIATFKEVTMGVPTRLQSQFRL 516 (997)
T ss_dssp EEEECCSSCCCHHHHHHHHHSCCCCCCCCCCC
T ss_pred EEEecCCCcchHHHHHHHhcCCCccccccccc
Confidence 999994 34556666665 456677776543
No 18
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=3.2e-38 Score=386.64 Aligned_cols=356 Identities=18% Similarity=0.203 Sum_probs=252.8
Q ss_pred ccCCCCCccccccCchhHhhhc--CCCCCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEE
Q 043190 663 ELLDLKPLPVTALGNNIYEALY--NFSHFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVV 738 (1492)
Q Consensus 663 ~l~~l~~~~~~~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l 738 (1492)
++.++..+....++....+.+. ||..|+|+|.++++.++.+ +++++++||||||||++|++|++..+... .+++++
T Consensus 20 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~l 99 (412)
T 3fht_A 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCL 99 (412)
T ss_dssp TTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEE
T ss_pred CccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEE
Confidence 3444455544456666666655 9999999999999999843 48999999999999999999999987653 345899
Q ss_pred EEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEeccc
Q 043190 739 YIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIH 818 (1492)
Q Consensus 739 ~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH 818 (1492)
|++|+++|+.|+++.+.+......+..+....|+..........++|+|+||+++..++.+. ....+.+++++|+||||
T Consensus 100 il~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~-~~~~~~~~~~iViDEah 178 (412)
T 3fht_A 100 CLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEAD 178 (412)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-CSSCGGGCCEEEEETHH
T ss_pred EECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc-CCcChhhCcEEEEeCHH
Confidence 99999999999999888755444467888888876655555567899999999998777552 22346899999999999
Q ss_pred ccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHHHhcCCcceeEecCCCcc-ccCcEEEEeccCCccc
Q 043190 819 LLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLADWLGVGEIGLFNFKPSVR-PVPLEVHIQGYPGKFY 896 (1492)
Q Consensus 819 ~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~~~~~~~r-~~~l~~~~~~~~~~~~ 896 (1492)
++.+..+.. ..+..+ ....+.+.+++++|||+++. ..+........ ..+....... ...+.........
T Consensus 179 ~~~~~~~~~--~~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--- 249 (412)
T 3fht_A 179 VMIATQGHQ--DQSIRI---QRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP-NVIKLKREEETLDTIKQYYVLCSS--- 249 (412)
T ss_dssp HHHSTTTTH--HHHHHH---HHTSCTTCEEEEEESCCCHHHHHHHHHHSSSC-EEECCCGGGSSCTTEEEEEEECSS---
T ss_pred HHhhcCCcH--HHHHHH---HhhCCCCceEEEEEeecCHHHHHHHHHhcCCC-eEEeeccccccccCceEEEEEcCC---
Confidence 875422211 111111 22345688999999999763 23333322222 1221111111 1111111111100
Q ss_pred cccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhcc
Q 043190 897 CPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQF 976 (1492)
Q Consensus 897 ~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 976 (1492)
..........+.....++++||||++++.++.++..|.+ .+.
T Consensus 250 ----~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~----------------------------------~~~ 291 (412)
T 3fht_A 250 ----RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK----------------------------------EGH 291 (412)
T ss_dssp ----HHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHH----------------------------------TTC
T ss_pred ----hHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHh----------------------------------CCC
Confidence 000111122223334567999999999999999987743 256
Q ss_pred ceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCC
Q 043190 977 GIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQ 1056 (1492)
Q Consensus 977 ~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g 1056 (1492)
++..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||+ |+.+.....+.+..+|+||+|||||.|
T Consensus 292 ~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR~g 367 (412)
T 3fht_A 292 QVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN----FDLPVDKDGNPDNETYLHRIGRTGRFG 367 (412)
T ss_dssp CCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEE----SSCCBCSSSSBCHHHHHHHHTTSSCTT
T ss_pred eEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEE----ECCCCCCCCCcchheeecccCcccCCC
Confidence 7899999999999999999999999999999999999999999999997 554433223357899999999999987
Q ss_pred CCCceEEEEEecCCcH
Q 043190 1057 YDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1057 ~~~~G~~i~l~~~~~~ 1072 (1492)
..|.|++++.+.+.
T Consensus 368 --~~g~~~~~~~~~~~ 381 (412)
T 3fht_A 368 --KRGLAVNMVDSKHS 381 (412)
T ss_dssp --CCEEEEEEECSHHH
T ss_pred --CCceEEEEEcChhh
Confidence 88999999987653
No 19
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=3.8e-38 Score=400.58 Aligned_cols=359 Identities=18% Similarity=0.255 Sum_probs=261.4
Q ss_pred cCchhHhhh--cCCCCCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccCC-----CceEEEEcccHHH
Q 043190 675 LGNNIYEAL--YNFSHFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQS-----DMKVVYIAPLKAI 746 (1492)
Q Consensus 675 l~~~~~~~~--~~~~~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~~-----~~~~l~i~P~r~L 746 (1492)
|+.+..+.+ +||..|+|+|.++++.++.+ +++++++||||||||++|++|+++.+.... +.++||++|+++|
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~L 107 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDL 107 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHH
Confidence 344444444 39999999999999998853 689999999999999999999999876532 4589999999999
Q ss_pred HHHHHHHHHHHhhh---ccCCEEEEEcCCCCcchhc----cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccc
Q 043190 747 VRERMNDWKDRLVS---QLGKEMVEMTGDYTPDLMA----LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHL 819 (1492)
Q Consensus 747 a~q~~~~~~~~~~~---~~g~~v~~~~g~~~~~~~~----~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~ 819 (1492)
|.|+++.+.+.+.. .....+..+.|+....... ..+++|+|+||+++..++.+. ....++.+++|||||||+
T Consensus 108 a~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 108 ALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKY-SNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHH-HHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhc-cccccccCCEEEEEChHH
Confidence 99999999886532 1245677777765533211 236899999999998777653 123578899999999998
Q ss_pred cCC-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHHHhcCCcceeEe-cCCCccc---cCcEEEEeccCC
Q 043190 820 LGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLADWLGVGEIGLFN-FKPSVRP---VPLEVHIQGYPG 893 (1492)
Q Consensus 820 l~~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~~-~~~~~r~---~~l~~~~~~~~~ 893 (1492)
+.+ .+++.++.++..+...........+++++|||+++. ..+..++...+..++. ......+ ..+.........
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 864 578888888888877655555688999999999873 5555554433322221 1111111 111111110000
Q ss_pred ccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHH
Q 043190 894 KFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQT 973 (1492)
Q Consensus 894 ~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 973 (1492)
...........+...+....+++++||||+|++.|+.++..|.+...
T Consensus 267 --~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~------------------------------- 313 (579)
T 3sqw_A 267 --FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK------------------------------- 313 (579)
T ss_dssp --TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT-------------------------------
T ss_pred --hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc-------------------------------
Confidence 00000011111222333346678999999999999999988865421
Q ss_pred hccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccC
Q 043190 974 LQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAG 1053 (1492)
Q Consensus 974 ~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRag 1053 (1492)
.+..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+||||
T Consensus 314 ~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~----~~~------p~s~~~y~Qr~GRag 383 (579)
T 3sqw_A 314 KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGV------PSELANYIHRIGRTA 383 (579)
T ss_dssp TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESC------CSSTTHHHHHHTTSS
T ss_pred CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE----cCC------CCCHHHhhhhccccc
Confidence 1467899999999999999999999999999999999999999999999998 543 235889999999999
Q ss_pred CCCCCCceEEEEEecCCcHHHHHHhh
Q 043190 1054 RPQYDQHGKAVILVHEPKKSFYKKFL 1079 (1492)
Q Consensus 1054 R~g~~~~G~~i~l~~~~~~~~~~~~l 1079 (1492)
|.| ..|.|++++.+.+...+..+.
T Consensus 384 R~g--~~g~~i~~~~~~e~~~~~~l~ 407 (579)
T 3sqw_A 384 RSG--KEGSSVLFICKDELPFVRELE 407 (579)
T ss_dssp CTT--CCEEEEEEEEGGGHHHHHHHH
T ss_pred cCC--CCceEEEEEcccHHHHHHHHH
Confidence 988 899999999998877766654
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=1.6e-39 Score=404.84 Aligned_cols=359 Identities=18% Similarity=0.207 Sum_probs=145.9
Q ss_pred cCCCCCccccccCchhHhhhc--CCCCCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEE
Q 043190 664 LLDLKPLPVTALGNNIYEALY--NFSHFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVY 739 (1492)
Q Consensus 664 l~~l~~~~~~~l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~ 739 (1492)
+.+..+++...|....++.+. ||..|+|+|.++++.++.+ +++++++||||||||++|++|++..+... .++++||
T Consensus 88 ~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~li 167 (479)
T 3fmp_B 88 LYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLC 167 (479)
T ss_dssp CCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEE
T ss_pred ccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEE
Confidence 344455555556667666665 9999999999999999843 48999999999999999999999887653 2458999
Q ss_pred EcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccc
Q 043190 740 IAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHL 819 (1492)
Q Consensus 740 i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~ 819 (1492)
++|+++|+.|+++.+.+......+..+....|+..........++|+|+||+++..++.+.. ...++++++|||||+|.
T Consensus 168 l~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~~iViDEah~ 246 (479)
T 3fmp_B 168 LSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLK-FIDPKKIKVFVLDEADV 246 (479)
T ss_dssp ECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSC-CCCGGGCCEEEECCHHH
T ss_pred EeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcC-CcCcccCCEEEEECHHH
Confidence 99999999999998887544334667777777665554445577999999999988776532 23468999999999998
Q ss_pred cCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHHHhcCCcceeEecCCCcc-ccCcEEEEeccCCcccc
Q 043190 820 LGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLADWLGVGEIGLFNFKPSVR-PVPLEVHIQGYPGKFYC 897 (1492)
Q Consensus 820 l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~~~~~~~r-~~~l~~~~~~~~~~~~~ 897 (1492)
+.+..+ +.... ..+....+...+++++|||+++. ..++..+.... ..+....... ...+...+. ..
T Consensus 247 ~~~~~~--~~~~~---~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~------~~ 314 (479)
T 3fmp_B 247 MIATQG--HQDQS---IRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP-NVIKLKREEETLDTIKQYYV------LC 314 (479)
T ss_dssp HHTSTT--HHHHH---HHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSE-EEEEEC----------------------
T ss_pred HhhcCC--cHHHH---HHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCC-eEEeccccccCcCCceEEEE------Ee
Confidence 754322 11111 12223345689999999999873 23333332221 1221111111 001110000 00
Q ss_pred ccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccc
Q 043190 898 PRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFG 977 (1492)
Q Consensus 898 ~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 977 (1492)
.. ..........+......+++||||++++.|+.++..|.. .+.+
T Consensus 315 ~~-~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~----------------------------------~~~~ 359 (479)
T 3fmp_B 315 SS-RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSK----------------------------------EGHQ 359 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CC-HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHh----------------------------------CCcc
Confidence 00 000111112222334567899999999999998877733 2567
Q ss_pred eEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCC
Q 043190 978 IGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQY 1057 (1492)
Q Consensus 978 v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~ 1057 (1492)
+.++||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+ |+.+.....+.+..+|+||+|||||.|
T Consensus 360 v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~----~d~p~~~~~~~s~~~~~Qr~GRagR~g- 434 (479)
T 3fmp_B 360 VALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVIN----FDLPVDKDGNPDNETYLHRIGRTGRFG- 434 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEE----ecCCCCCccCCCHHHHHHHhcccccCC-
Confidence 899999999999999999999999999999999999999999999997 554432222245789999999999987
Q ss_pred CCceEEEEEecCCcHHHHH
Q 043190 1058 DQHGKAVILVHEPKKSFYK 1076 (1492)
Q Consensus 1058 ~~~G~~i~l~~~~~~~~~~ 1076 (1492)
..|.|++++.+.+...+.
T Consensus 435 -~~G~~i~~~~~~~~~~~~ 452 (479)
T 3fmp_B 435 -KRGLAVNMVDSKHSMNIL 452 (479)
T ss_dssp -------------------
T ss_pred -CCceEEEEEcCcchHHHH
Confidence 889999999876644333
No 21
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=9.6e-38 Score=402.18 Aligned_cols=457 Identities=16% Similarity=0.182 Sum_probs=305.3
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
..|++.|.+++..++.++++++++||||||||++..+.++..... ..+.++++++|+++|+.|+++++...++...+..
T Consensus 92 ~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~ 171 (773)
T 2xau_A 92 ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEE 171 (773)
T ss_dssp TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTT
T ss_pred cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhhe
Confidence 678999999999988788899999999999999544443332222 1256799999999999999988877664433444
Q ss_pred EEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCc
Q 043190 766 MVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERA 845 (1492)
Q Consensus 766 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~ 845 (1492)
++... ..+......++|+++|||++...+.. ...+.++++||+||+|. |+...+.++..++.+... .++
T Consensus 172 vG~~i---~~~~~~~~~~~I~v~T~G~l~r~l~~---~~~l~~~~~lIlDEah~----R~ld~d~~~~~l~~l~~~-~~~ 240 (773)
T 2xau_A 172 VGYSI---RFENKTSNKTILKYMTDGMLLREAME---DHDLSRYSCIILDEAHE----RTLATDILMGLLKQVVKR-RPD 240 (773)
T ss_dssp EEEEE---TTEEECCTTCSEEEEEHHHHHHHHHH---STTCTTEEEEEECSGGG----CCHHHHHHHHHHHHHHHH-CTT
T ss_pred eccee---ccccccCCCCCEEEECHHHHHHHHhh---CccccCCCEEEecCccc----cccchHHHHHHHHHHHHh-CCC
Confidence 43211 11222235789999999988655543 34588999999999994 333333444444444332 347
Q ss_pred eEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEec
Q 043190 846 VRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVS 925 (1492)
Q Consensus 846 ~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~ 925 (1492)
.++|+||||+ +.+++++|++... ++. ...+..++...+...+...+. .... .....+....+++++||||+
T Consensus 241 ~~iIl~SAT~-~~~~l~~~~~~~~--vi~--v~gr~~pv~~~~~~~~~~~~~---~~~l-~~l~~~~~~~~~g~iLVF~~ 311 (773)
T 2xau_A 241 LKIIIMSATL-DAEKFQRYFNDAP--LLA--VPGRTYPVELYYTPEFQRDYL---DSAI-RTVLQIHATEEAGDILLFLT 311 (773)
T ss_dssp CEEEEEESCS-CCHHHHHHTTSCC--EEE--CCCCCCCEEEECCSSCCSCHH---HHHH-HHHHHHHHHSCSCEEEEECS
T ss_pred ceEEEEeccc-cHHHHHHHhcCCC--ccc--ccCcccceEEEEecCCchhHH---HHHH-HHHHHHHHhcCCCCEEEECC
Confidence 8999999999 6788999997433 222 233445555443322211110 0000 11112222346789999999
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHh-----cC
Q 043190 926 SRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFA-----NN 1000 (1492)
Q Consensus 926 s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~-----~g 1000 (1492)
++++++.++..|.+.... + . ......+..+.++||+|++++|..+++.|+ +|
T Consensus 312 ~~~~i~~l~~~L~~~~~~--------------l---~------~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g 368 (773)
T 2xau_A 312 GEDEIEDAVRKISLEGDQ--------------L---V------REEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP 368 (773)
T ss_dssp CHHHHHHHHHHHHHHHHH--------------H---H------HHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC
T ss_pred CHHHHHHHHHHHHHHHHh--------------h---c------ccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC
Confidence 999999999888653210 0 0 000113567999999999999999999999 99
Q ss_pred CceEEEeccccccccCCCCcEEEEec----ceeeeCccCccc----cCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 1001 KIQVLVCTSTLAWGVNLPAHLVIIKG----TEYYDGKTKRYV----DFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1001 ~~~vLvaT~~l~~Gvdip~~~~VI~~----~~~~~~~~~~~~----~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
.++|||||+++++|||+|++++||+. .+.||+..+... +.|.++|.||+|||||. ..|.||.++++.+.
T Consensus 369 ~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 369 GRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp CEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred ceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 99999999999999999999999983 356888765322 77899999999999997 58999999965432
Q ss_pred HHHHHhhcCCCceeecccccchhhhHHHhhhCcccCHHHHHHHHhhchheeecccCccccCCCCCCcccHHHHHHHHHHH
Q 043190 1073 SFYKKFLYEPFPVESSLRDQLHDHFNAEIVSGTIFHKEDAVHYLSWTYLFRRLAINPAYYGLEDTEAEGLSSYLSRLVQN 1152 (1492)
Q Consensus 1073 ~~~~~~l~~~~pies~l~~~l~~~l~~ei~~~~i~~~~~~~~~l~~t~~~~rl~~np~~y~~~~~~~~~~~~~l~~~i~~ 1152 (1492)
...+.....| ..+...|...++.....| +.+..+ ..| +.+ + ..+.+++
T Consensus 446 --~~~l~~~~~p--Ei~r~~L~~~~L~l~~~g-i~~~~~------f~~-------------~~~---p-----~~~~i~~ 493 (773)
T 2xau_A 446 --QKELIEQSYP--EILRSNLSSTVLELKKLG-IDDLVH------FDF-------------MDP---P-----APETMMR 493 (773)
T ss_dssp --HHTSCSSCCC--GGGGSCCHHHHHHHHHTT-CCCGGG------CCC-------------SSC---C-----CHHHHHH
T ss_pred --cccccccCCC--ccccCcHHHHHHHHHHcC-CCChhh------ccc-------------cCC---C-----cHHHHHH
Confidence 1223222222 223334444444433333 222111 000 011 1 1356788
Q ss_pred HHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhH
Q 043190 1153 TFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDN 1226 (1492)
Q Consensus 1153 ~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~ 1226 (1492)
+++.|.+.|+|+.++ .+|++|+.+|.+|++|.++++++.+.... +...++.++|..+ +.++.+|..+..
T Consensus 494 a~~~L~~lgald~~~---~lT~lG~~~a~~pl~p~~~~~l~~~~~~~-c~~~~l~i~a~ls-~~~~f~~~~~~~ 562 (773)
T 2xau_A 494 ALEELNYLACLDDEG---NLTPLGRLASQFPLDPMLAVMLIGSFEFQ-CSQEILTIVAMLS-VPNVFIRPTKDK 562 (773)
T ss_dssp HHHHHHHTTSBCTTS---CBCHHHHHHTTSSSCHHHHHHHHHGGGGT-CHHHHHHHHHHHT-SCCCBCCCTTCH
T ss_pred HHHHHHHcCCcccCC---CcChhhhhhccccCCHHHHHHHHhhcccC-chhHHHHHHHhcc-cCCcccCChHHH
Confidence 999999999996443 47999999999999999999999876543 4566666665544 356666665543
No 22
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.6e-38 Score=396.39 Aligned_cols=335 Identities=19% Similarity=0.282 Sum_probs=251.7
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
..++..|||..|+|+|.++++.++ .++++++.+|||+|||++|++|++.. .+++||++|+++|+.|+++.+.+.
T Consensus 34 ~~L~~~fg~~~~rp~Q~~~i~~il-~g~d~lv~~pTGsGKTl~~~lpal~~-----~g~~lVisP~~~L~~q~~~~l~~~ 107 (591)
T 2v1x_A 34 DILQNVFKLEKFRPLQLETINVTM-AGKEVFLVMPTGGGKSLCYQLPALCS-----DGFTLVICPLISLMEDQLMVLKQL 107 (591)
T ss_dssp HHHHHTSCCCSCCTTHHHHHHHHH-TTCCEEEECCTTSCTTHHHHHHHHTS-----SSEEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEEECCCChHHHHHHHHHHHc-----CCcEEEEeCHHHHHHHHHHHHHhc
Confidence 556777899999999999999998 68999999999999999999999763 679999999999999999988763
Q ss_pred hhhccCCEEEEEcCCCCcchh---------ccCCCcEEEECchhhh---HhhhcccCccccCcccEEEEecccccCC---
Q 043190 758 LVSQLGKEMVEMTGDYTPDLM---------ALLSADIIISTPEKWD---GISRNWHSRNYVKKVGLMILDEIHLLGA--- 822 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~---------~~~~~~Iiv~Tpe~l~---~l~~~~~~~~~l~~i~liViDEaH~l~~--- 822 (1492)
|+++..++|+...... .....+|+|+|||++. .++........+.+++++||||||++.+
T Consensus 108 -----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~ 182 (591)
T 2v1x_A 108 -----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGH 182 (591)
T ss_dssp -----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCT
T ss_pred -----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccccccc
Confidence 7889999998765422 2347899999999873 2333222223367899999999999853
Q ss_pred CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccc
Q 043190 823 ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM 900 (1492)
Q Consensus 823 ~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~ 900 (1492)
++.+.+..+ ..++.. .++.+++++|||+++. +++..+++......+.. ......+...+..... ..
T Consensus 183 dfr~~~~~l-~~l~~~----~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~--~~~r~nl~~~v~~~~~-----~~ 250 (591)
T 2v1x_A 183 DFRPDYKAL-GILKRQ----FPNASLIGLTATATNHVLTDAQKILCIEKCFTFTA--SFNRPNLYYEVRQKPS-----NT 250 (591)
T ss_dssp TCCGGGGGG-GHHHHH----CTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEEC--CCCCTTEEEEEEECCS-----SH
T ss_pred ccHHHHHHH-HHHHHh----CCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEec--CCCCcccEEEEEeCCC-----cH
Confidence 244555432 122221 2468899999999873 67888888765443332 2222222222221110 00
Q ss_pred cccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEe
Q 043190 901 NSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGL 980 (1492)
Q Consensus 901 ~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~ 980 (1492)
......+...+....+++++||||+|++.++.++..|.. .+..+..
T Consensus 251 ~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~----------------------------------~g~~~~~ 296 (591)
T 2v1x_A 251 EDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQN----------------------------------LGIHAGA 296 (591)
T ss_dssp HHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEE
T ss_pred HHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHH----------------------------------CCCCEEE
Confidence 011112233333344678999999999999999988743 2678999
Q ss_pred ecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCc
Q 043190 981 HHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQH 1060 (1492)
Q Consensus 981 ~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~ 1060 (1492)
+||+|++++|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|+||+|||||.| .+
T Consensus 297 ~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~----~~~------p~s~~~y~Qr~GRaGR~G--~~ 364 (591)
T 2v1x_A 297 YHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH----HSM------SKSMENYYQESGRAGRDD--MK 364 (591)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE----SSC------CSSHHHHHHHHTTSCTTS--SC
T ss_pred ecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE----eCC------CCCHHHHHHHhccCCcCC--CC
Confidence 999999999999999999999999999999999999999999998 443 336999999999999987 79
Q ss_pred eEEEEEecCCcHHHHHHhhcC
Q 043190 1061 GKAVILVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1061 G~~i~l~~~~~~~~~~~~l~~ 1081 (1492)
|.|++++...+......++..
T Consensus 365 g~~i~l~~~~D~~~~~~~~~~ 385 (591)
T 2v1x_A 365 ADCILYYGFGDIFRISSMVVM 385 (591)
T ss_dssp EEEEEEECHHHHHHHHHHTTT
T ss_pred ceEEEEEChHHHHHHHHHHhh
Confidence 999999988887777666643
No 23
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=385.80 Aligned_cols=343 Identities=17% Similarity=0.188 Sum_probs=244.6
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC-------------------
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS------------------- 733 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~------------------- 733 (1492)
++....+.+. ||..|+|+|.++++.++ .+++++++||||||||++|++|++..+...+
T Consensus 22 l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (417)
T 2i4i_A 22 MGEIIMGNIELTRYTRPTPVQKHAIPIIK-EKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQ 100 (417)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSB
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccC
Confidence 3334444443 99999999999999988 7899999999999999999999998764321
Q ss_pred CceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCccc
Q 043190 734 DMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVG 810 (1492)
Q Consensus 734 ~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~ 810 (1492)
+++++|++|+++|+.|+++.+.+... ..+.++..++|+...... ...+++|+|+||+++..++... ...+++++
T Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~~~ 177 (417)
T 2i4i_A 101 YPISLVLAPTRELAVQIYEEARKFSY-RSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG--KIGLDFCK 177 (417)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHT-TSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--SBCCTTCC
T ss_pred CccEEEECCcHHHHHHHHHHHHHHhC-cCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC--CcChhhCc
Confidence 26799999999999999999987543 348889999988764321 2346899999999998877753 33478899
Q ss_pred EEEEecccccCC-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHH-HHhcCCcceeEecCCCccccCcEEE
Q 043190 811 LMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLA-DWLGVGEIGLFNFKPSVRPVPLEVH 887 (1492)
Q Consensus 811 liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~-~~l~~~~~~~~~~~~~~r~~~l~~~ 887 (1492)
+||+||||++.+ .++..+..++.... .......+++++|||+++. ..+. .|++.. ..+........+..+...
T Consensus 178 ~iViDEah~~~~~~~~~~~~~i~~~~~---~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~ 253 (417)
T 2i4i_A 178 YLVLDEADRMLDMGFEPQIRRIVEQDT---MPPKGVRHTMMFSATFPKEIQMLARDFLDEY-IFLAVGRVGSTSENITQK 253 (417)
T ss_dssp EEEESSHHHHHHTTCHHHHHHHHTSSS---CCCBTTBEEEEEESCCCHHHHHHHHHHCSSC-EEEEEC----CCSSEEEE
T ss_pred EEEEEChhHhhccCcHHHHHHHHHhcc---CCCcCCcEEEEEEEeCCHHHHHHHHHHcCCC-EEEEeCCCCCCccCceEE
Confidence 999999998753 34444444433110 0112368999999999762 3333 344322 111111111111112221
Q ss_pred EeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCc
Q 043190 888 IQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTD 967 (1492)
Q Consensus 888 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 967 (1492)
+..... ......+...+.....++++||||++++.++.++..|.+
T Consensus 254 ~~~~~~-------~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~---------------------------- 298 (417)
T 2i4i_A 254 VVWVEE-------SDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYH---------------------------- 298 (417)
T ss_dssp EEECCG-------GGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHH----------------------------
T ss_pred EEEecc-------HhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHH----------------------------
Confidence 111110 011112333444445678999999999999999887743
Q ss_pred HHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHH
Q 043190 968 QNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQ 1047 (1492)
Q Consensus 968 ~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Q 1047 (1492)
.+..+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+|
T Consensus 299 ------~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~----~~~------p~s~~~~~Q 362 (417)
T 2i4i_A 299 ------EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDL------PSDIEEYVH 362 (417)
T ss_dssp ------TTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE----SSC------CSSHHHHHH
T ss_pred ------CCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE----EcC------CCCHHHHHH
Confidence 2567999999999999999999999999999999999999999999999997 443 336899999
Q ss_pred hhcccCCCCCCCceEEEEEecCCcHHHHHHh
Q 043190 1048 MMGRAGRPQYDQHGKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1048 r~GRagR~g~~~~G~~i~l~~~~~~~~~~~~ 1078 (1492)
|+|||||.| ..|.|++++++.+...+.++
T Consensus 363 r~GR~gR~g--~~g~~~~~~~~~~~~~~~~l 391 (417)
T 2i4i_A 363 RIGRTGRVG--NLGLATSFFNERNINITKDL 391 (417)
T ss_dssp HHTTBCC----CCEEEEEEECGGGGGGHHHH
T ss_pred hcCccccCC--CCceEEEEEccccHHHHHHH
Confidence 999999988 78999999988775544433
No 24
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.7e-37 Score=376.25 Aligned_cols=345 Identities=19% Similarity=0.272 Sum_probs=248.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRER 750 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~ 750 (1492)
++....+.+. ||..|+|+|.++++.++.+ +++++++||||||||++|+++++..+... .+++++|++|+++|+.|+
T Consensus 12 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 91 (395)
T 3pey_A 12 LAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQT 91 (395)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHH
Confidence 3445555554 8999999999999999843 28999999999999999999999987643 467999999999999999
Q ss_pred HHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHH
Q 043190 751 MNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEV 830 (1492)
Q Consensus 751 ~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~ 830 (1492)
++.+.+ +....+..+....|+.... ....+++|+|+||+++..++.+. ...+.++++||+||||.+.+..+ +..
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIiDEah~~~~~~~--~~~ 165 (395)
T 3pey_A 92 LEVVQE-MGKFTKITSQLIVPDSFEK-NKQINAQVIVGTPGTVLDLMRRK--LMQLQKIKIFVLDEADNMLDQQG--LGD 165 (395)
T ss_dssp HHHHHH-HTTTSCCCEEEESTTSSCT-TSCBCCSEEEECHHHHHHHHHTT--CBCCTTCCEEEEETHHHHHHSTT--HHH
T ss_pred HHHHHH-HhcccCeeEEEEecCchhh-hccCCCCEEEEcHHHHHHHHHcC--CcccccCCEEEEEChhhhcCccc--cHH
Confidence 999887 4444477788777765433 23347899999999998777653 33478899999999998754322 222
Q ss_pred HHHHHHHhhhccCCceEEEEEcCCCCCh-HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHH
Q 043190 831 IVSRMRYISSQTERAVRFIGLSTALANA-GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYA 909 (1492)
Q Consensus 831 i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1492)
.+.++ ....+...+++++|||+++. ..+..++......+...........+......... .........
T Consensus 166 ~~~~~---~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~ 235 (395)
T 3pey_A 166 QCIRV---KRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKN-------EADKFDVLT 235 (395)
T ss_dssp HHHHH---HHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSS-------HHHHHHHHH
T ss_pred HHHHH---HHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCc-------hHHHHHHHH
Confidence 22222 22345678999999999763 44444443332221111111111112221111100 000112233
Q ss_pred HHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHH
Q 043190 910 AICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKD 989 (1492)
Q Consensus 910 ~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 989 (1492)
.+.....++++||||++++.++.++..|.+ .+..+..+||+++..+
T Consensus 236 ~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----------------------------------~~~~~~~~~~~~~~~~ 281 (395)
T 3pey_A 236 ELYGLMTIGSSIIFVATKKTANVLYGKLKS----------------------------------EGHEVSILHGDLQTQE 281 (395)
T ss_dssp HHHTTTTSSEEEEECSCHHHHHHHHHHHHH----------------------------------TTCCCEEECTTSCHHH
T ss_pred HHHHhccCCCEEEEeCCHHHHHHHHHHHHh----------------------------------cCCcEEEeCCCCCHHH
Confidence 334445678999999999999999887743 2567899999999999
Q ss_pred HHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 990 RSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 990 R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
|..+++.|++|+.+|||||+++++|+|+|++++||+ |+.+.......+..+|+||+|||||.| ..|.|++++.+
T Consensus 282 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~ 355 (395)
T 3pey_A 282 RDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVN----YDLPTLANGQADPATYIHRIGRTGRFG--RKGVAISFVHD 355 (395)
T ss_dssp HHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEE----SSCCBCTTSSBCHHHHHHHHTTSSCTT--CCEEEEEEECS
T ss_pred HHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEE----cCCCCCCcCCCCHHHhhHhccccccCC--CCceEEEEEec
Confidence 999999999999999999999999999999999997 554432223347899999999999987 78999999987
Q ss_pred CcHHHH
Q 043190 1070 PKKSFY 1075 (1492)
Q Consensus 1070 ~~~~~~ 1075 (1492)
.+...+
T Consensus 356 ~~~~~~ 361 (395)
T 3pey_A 356 KNSFNI 361 (395)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 654433
No 25
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=2.8e-37 Score=377.65 Aligned_cols=339 Identities=15% Similarity=0.247 Sum_probs=245.3
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P~r~La~q~~ 751 (1492)
+.....+.+. ||..|+|+|.++++.++ .++++++++|||||||++|++|+++.+.. ..+.+++|++|+++|+.|++
T Consensus 44 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~ 122 (410)
T 2j0s_A 44 LREDLLRGIYAYGFEKPSAIQQRAIKQII-KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQ 122 (410)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHH
Confidence 4445555554 99999999999999998 67899999999999999999999998753 24689999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~ 827 (1492)
+.+.+ +....+..+..+.|+...... ...+++|+|+||+++..++++. ...+.+++++|+||||.+.+ .+...
T Consensus 123 ~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~--~~~~~~~~~vViDEah~~~~~~~~~~ 199 (410)
T 2j0s_A 123 KGLLA-LGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR--SLRTRAIKMLVLDEADEMLNKGFKEQ 199 (410)
T ss_dssp HHHHH-HTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHTSTTTHHH
T ss_pred HHHHH-HhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC--CccHhheeEEEEccHHHHHhhhhHHH
Confidence 99987 444558888888887654322 1236799999999998887763 33467899999999998754 33222
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCCh-HHHH-HHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALANA-GDLA-DWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~-~~~~-~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
+.. +....+...+++++|||+++. .++. .++. .+..+...........+...+...... ....
T Consensus 200 ~~~-------i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~k~ 264 (410)
T 2j0s_A 200 IYD-------VYRYLPPATQVVLISATLPHEILEMTNKFMT-DPIRILVKRDELTLEGIKQFFVAVERE-------EWKF 264 (410)
T ss_dssp HHH-------HHTTSCTTCEEEEEESCCCHHHHTTGGGTCS-SCEEECCCGGGCSCTTEEEEEEEESST-------THHH
T ss_pred HHH-------HHHhCccCceEEEEEcCCCHHHHHHHHHHcC-CCEEEEecCccccCCCceEEEEEeCcH-------HhHH
Confidence 222 222345678999999999752 1222 2222 111111100111111122211111100 0011
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
..+..+......+++||||++++.++.++..|.+ .+..+..+||++
T Consensus 265 ~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~h~~~ 310 (410)
T 2j0s_A 265 DTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE----------------------------------ANFTVSSMHGDM 310 (410)
T ss_dssp HHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHH----------------------------------TTCCCEEECTTS
T ss_pred HHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHh----------------------------------CCCceEEeeCCC
Confidence 1222222333456899999999999999887743 256789999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
++.+|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| ..|.|++
T Consensus 311 ~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~~------p~s~~~~~Qr~GR~gR~g--~~g~~~~ 378 (410)
T 2j0s_A 311 PQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN----YDL------PNNRELYIHRIGRSGRYG--RKGVAIN 378 (410)
T ss_dssp CHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSC------CSSHHHHHHHHTTSSGGG--CCEEEEE
T ss_pred CHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE----ECC------CCCHHHHHHhcccccCCC--CceEEEE
Confidence 9999999999999999999999999999999999999998 443 235899999999999987 8899999
Q ss_pred EecCCcHHHHHHh
Q 043190 1066 LVHEPKKSFYKKF 1078 (1492)
Q Consensus 1066 l~~~~~~~~~~~~ 1078 (1492)
++.+.+...+.++
T Consensus 379 ~~~~~~~~~~~~i 391 (410)
T 2j0s_A 379 FVKNDDIRILRDI 391 (410)
T ss_dssp EEEGGGHHHHHHH
T ss_pred EecHHHHHHHHHH
Confidence 9998886665443
No 26
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.3e-37 Score=381.58 Aligned_cols=340 Identities=16% Similarity=0.247 Sum_probs=233.3
Q ss_pred cCchhHhhh--cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEAL--YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~--~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
+.....+.+ +||..|+|+|.++++.++ .+++++++||||||||++|++++++.+... .+.+++|++|+++|+.|++
T Consensus 47 l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 125 (414)
T 3eiq_A 47 LSESLLRGIYAYGFEKPSAIQQRAILPCI-KGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQ 125 (414)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHhHHHh-CCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHH
Confidence 444444444 399999999999999998 688999999999999999999999987653 4678999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh----ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCcc
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM----ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGP 826 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~----~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~ 826 (1492)
+.+.+. ....+..+....|+...... ....++|+|+||+++...+.+. ...+.++++||+||||++.+ .++.
T Consensus 126 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~--~~~~~~~~~vViDEah~~~~~~~~~ 202 (414)
T 3eiq_A 126 KVVMAL-GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR--YLSPKYIKMFVLDEADEMLSRGFKD 202 (414)
T ss_dssp HHHHHH-GGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT--SSCSTTCCEEEECSHHHHHHTTTHH
T ss_pred HHHHHH-hcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC--CcccccCcEEEEECHHHhhccCcHH
Confidence 999884 44448888888887654322 1256899999999987777652 23467899999999997643 3333
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
.+..++ .....+.+++++|||+++ ...+...+......+...........+......... .....
T Consensus 203 ~~~~~~-------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 268 (414)
T 3eiq_A 203 QIYDIF-------QKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVER-------EEWKL 268 (414)
T ss_dssp HHHHHH-------TTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSS-------STTHH
T ss_pred HHHHHH-------HhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeCh-------HHhHH
Confidence 333332 234568999999999875 222333222222111111111111111111111110 01111
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
..+..+......+++||||++++.++.++..|.+ .+..+..+||++
T Consensus 269 ~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~----------------------------------~~~~~~~~h~~~ 314 (414)
T 3eiq_A 269 DTLCDLYETLTITQAVIFINTRRKVDWLTEKMHA----------------------------------RDFTVSAMHGDM 314 (414)
T ss_dssp HHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHT----------------------------------TTCCCEEC---C
T ss_pred HHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHh----------------------------------cCCeEEEecCCC
Confidence 2333344455678999999999999999887732 256789999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
++++|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+|||||.| ..|.|++
T Consensus 315 ~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~----~~~------p~s~~~~~Qr~GR~gR~g--~~g~~~~ 382 (414)
T 3eiq_A 315 DQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDL------PTNRENYIHRIGRGGRFG--RKGVAIN 382 (414)
T ss_dssp HHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE----SSC------CSSTHHHHHHSCCC---------CEEE
T ss_pred CHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE----eCC------CCCHHHhhhhcCcccCCC--CCceEEE
Confidence 9999999999999999999999999999999999999997 442 335889999999999987 7899999
Q ss_pred EecCCcHHHHHHh
Q 043190 1066 LVHEPKKSFYKKF 1078 (1492)
Q Consensus 1066 l~~~~~~~~~~~~ 1078 (1492)
++++.+...+.++
T Consensus 383 ~~~~~~~~~~~~~ 395 (414)
T 3eiq_A 383 MVTEEDKRTLRDI 395 (414)
T ss_dssp EECSTHHHHHHHH
T ss_pred EEcHHHHHHHHHH
Confidence 9999887766554
No 27
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.4e-36 Score=370.26 Aligned_cols=339 Identities=18% Similarity=0.232 Sum_probs=248.9
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
++....+.+. ||..|+|+|.++++.++ .++++++++|||||||++|++|++..+... .+.+++|++|+++|+.|++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~ 106 (400)
T 1s2m_A 28 LKRELLMGIFEAGFEKPSPIQEEAIPVAI-TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTS 106 (400)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHH
Confidence 4445555554 89999999999999998 678999999999999999999999987643 3568999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPIL 828 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~ 828 (1492)
+.+.+.... .+.++...+|+...... ....++|+|+||+++..++.+. ...+.+++++|+||||++.+. .+
T Consensus 107 ~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~--~~~~~~~~~vIiDEaH~~~~~---~~ 180 (400)
T 1s2m_A 107 QVVRTLGKH-CGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK--VADLSDCSLFIMDEADKMLSR---DF 180 (400)
T ss_dssp HHHHHHTTT-TTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT--CSCCTTCCEEEEESHHHHSSH---HH
T ss_pred HHHHHHhcc-cCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC--CcccccCCEEEEeCchHhhhh---ch
Confidence 999875444 48889989888764321 2357899999999987776653 234788999999999977542 22
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChh
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP 906 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 906 (1492)
...+.. +....+...+++++|||++.. +.+..+++.+. ............+........ ......
T Consensus 181 ~~~~~~---i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--------~~~k~~ 247 (400)
T 1s2m_A 181 KTIIEQ---ILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPY--EINLMEELTLKGITQYYAFVE--------ERQKLH 247 (400)
T ss_dssp HHHHHH---HHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCE--EESCCSSCBCTTEEEEEEECC--------GGGHHH
T ss_pred HHHHHH---HHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCe--EEEeccccccCCceeEEEEec--------hhhHHH
Confidence 222322 223345678999999998752 22333333221 111111111112222111110 001112
Q ss_pred HHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCC
Q 043190 907 AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLN 986 (1492)
Q Consensus 907 ~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 986 (1492)
....+......+++||||++++.++.++..|.+ .+.++..+||+++
T Consensus 248 ~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~~~~~~ 293 (400)
T 1s2m_A 248 CLNTLFSKLQINQAIIFCNSTNRVELLAKKITD----------------------------------LGYSCYYSHARMK 293 (400)
T ss_dssp HHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHH----------------------------------HTCCEEEECTTSC
T ss_pred HHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHh----------------------------------cCCCeEEecCCCC
Confidence 223333445667999999999999999887743 2567899999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 987 DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 987 ~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
..+|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+|||||.| ..|.|+++
T Consensus 294 ~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~----~~~------p~s~~~~~Qr~GR~gR~g--~~g~~~~l 361 (400)
T 1s2m_A 294 QQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDF------PKTAETYLHRIGRSGRFG--HLGLAINL 361 (400)
T ss_dssp HHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSC------CSSHHHHHHHHCBSSCTT--CCEEEEEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE----eCC------CCCHHHHHHhcchhcCCC--CCceEEEE
Confidence 999999999999999999999999999999999999997 442 346889999999999988 78999999
Q ss_pred ecCCcHHHHHHhh
Q 043190 1067 VHEPKKSFYKKFL 1079 (1492)
Q Consensus 1067 ~~~~~~~~~~~~l 1079 (1492)
+++.+...+.++.
T Consensus 362 ~~~~~~~~~~~i~ 374 (400)
T 1s2m_A 362 INWNDRFNLYKIE 374 (400)
T ss_dssp ECGGGHHHHHHHH
T ss_pred eccchHHHHHHHH
Confidence 9998876665554
No 28
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1e-36 Score=370.29 Aligned_cols=326 Identities=17% Similarity=0.189 Sum_probs=240.6
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
||..|+|+|.++++.++ .++++++++|||+|||++|++|++..+... .+.+++|++|+++|+.|+++.+.+......+
T Consensus 27 g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 105 (391)
T 1xti_A 27 GFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 105 (391)
T ss_dssp SCCSCCHHHHHHHHHHT-TTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTT
T ss_pred CCCCCCHHHHHHHHHHh-cCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCC
Confidence 99999999999999998 678999999999999999999999887653 3569999999999999999998875544447
Q ss_pred CEEEEEcCCCCcchhc----cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhh
Q 043190 764 KEMVEMTGDYTPDLMA----LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYIS 839 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~----~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~ 839 (1492)
.++..++|+....... ...++|+|+||+++..++++. ...+.+++++|+||||++.+.. .+.. .+..+.
T Consensus 106 ~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~vViDEaH~~~~~~--~~~~---~~~~~~ 178 (391)
T 1xti_A 106 VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--SLNLKHIKHFILDECDKMLEQL--DMRR---DVQEIF 178 (391)
T ss_dssp CCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT--SSCCTTCSEEEECSHHHHTSSH--HHHH---HHHHHH
T ss_pred eEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC--CccccccCEEEEeCHHHHhhcc--chHH---HHHHHH
Confidence 8899999987643221 234799999999998877763 2347899999999999885431 1212 222223
Q ss_pred hccCCceEEEEEcCCCCCh-HH-HHHHhcCCcceeEecCCCc--cccCcEEEEeccCCccccccccccChhHHHHHhhcC
Q 043190 840 SQTERAVRFIGLSTALANA-GD-LADWLGVGEIGLFNFKPSV--RPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHS 915 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~~-~~-~~~~l~~~~~~~~~~~~~~--r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 915 (1492)
...+...+++++|||+++. .. +..+++... .+. ..... ....+......... .........+....
T Consensus 179 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~l~~~ 248 (391)
T 1xti_A 179 RMTPHEKQVMMFSATLSKEIRPVCRKFMQDPM-EIF-VDDETKLTLHGLQQYYVKLKD--------NEKNRKLFDLLDVL 248 (391)
T ss_dssp HTSCSSSEEEEEESSCCSTHHHHHHHHCSSCE-EEE-CCCCCCCCCTTCEEEEEECCG--------GGHHHHHHHHHHHS
T ss_pred hhCCCCceEEEEEeeCCHHHHHHHHHHcCCCe-EEE-ecCccccCcccceEEEEEcCc--------hhHHHHHHHHHHhc
Confidence 3345688999999999873 33 334443221 111 11111 11122222211110 00111222233334
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
.++++||||++++.++.++..|.+ .+..+..+||+++.++|..+++
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~~~~~~~~~r~~~~~ 294 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVE----------------------------------QNFPAIAIHRGMPQEERLSRYQ 294 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHH----------------------------------TTCCEEEECTTSCHHHHHHHHH
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh----------------------------------CCCcEEEEeCCCCHHHHHHHHH
Confidence 678999999999999999887743 2567899999999999999999
Q ss_pred HHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH
Q 043190 996 LFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF 1074 (1492)
Q Consensus 996 ~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~ 1074 (1492)
.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+|||||.| ..|.|++++.+.+...
T Consensus 295 ~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~----~~~------p~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~ 361 (391)
T 1xti_A 295 QFKDFQRRILVATNLFGRGMDIERVNIAFN----YDM------PEDSDTYLHRVARAGRFG--TKGLAITFVSDENDAK 361 (391)
T ss_dssp HHHTTCCSEEEESCCCSSCBCCTTEEEEEE----SSC------CSSHHHHHHHHCBCSSSC--CCCEEEEEECSHHHHH
T ss_pred HHhcCCCcEEEECChhhcCCCcccCCEEEE----eCC------CCCHHHHHHhcccccCCC--CceEEEEEEcccchHH
Confidence 999999999999999999999999999997 442 336899999999999987 8999999998775543
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.8e-37 Score=385.80 Aligned_cols=328 Identities=20% Similarity=0.301 Sum_probs=246.9
Q ss_pred hhHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 678 NIYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 678 ~~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
..++..|||..|+|+|.++++.++ .++++++++|||+|||++|.+|++.. .++++|++|+++|+.|+++.+..
T Consensus 15 ~~l~~~~g~~~~r~~Q~~~i~~il-~g~d~lv~apTGsGKTl~~~lp~l~~-----~g~~lvi~P~~aL~~q~~~~l~~- 87 (523)
T 1oyw_A 15 QVLQETFGYQQFRPGQEEIIDTVL-SGRDCLVVMPTGGGKSLCYQIPALLL-----NGLTVVVSPLISLMKDQVDQLQA- 87 (523)
T ss_dssp HHHHHTTCCSSCCTTHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHS-----SSEEEEECSCHHHHHHHHHHHHH-
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHH-cCCCEEEECCCCcHHHHHHHHHHHHh-----CCCEEEECChHHHHHHHHHHHHH-
Confidence 456677899999999999999998 77899999999999999999998853 57899999999999999988765
Q ss_pred hhhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC---CCccH
Q 043190 758 LVSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA---ERGPI 827 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~---~~g~~ 827 (1492)
+ |+.+..++|+...... .....+|+++|||++..... .......++++|||||||++.+ ++.+.
T Consensus 88 ~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~--~~~l~~~~~~~vViDEaH~i~~~g~~fr~~ 161 (523)
T 1oyw_A 88 N----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNF--LEHLAHWNPVLLAVDEAHCISQWGHDFRPE 161 (523)
T ss_dssp T----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTH--HHHHTTSCEEEEEESSGGGGCTTSSCCCHH
T ss_pred c----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHH--HHHHhhCCCCEEEEeCccccCcCCCccHHH
Confidence 2 7888888887664321 12468999999998742211 0111236889999999999853 23344
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccCh
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
+..+. +++ ... ++.+++++|||+++. .++..+++.....++. ....++ .+...+... .....
T Consensus 162 ~~~l~-~l~---~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~-~~~~r~-~l~~~v~~~---------~~~~~ 225 (523)
T 1oyw_A 162 YAALG-QLR---QRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQI-SSFDRP-NIRYMLMEK---------FKPLD 225 (523)
T ss_dssp HHGGG-GHH---HHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEE-CCCCCT-TEEEEEEEC---------SSHHH
T ss_pred HHHHH-HHH---HhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEe-CCCCCC-ceEEEEEeC---------CCHHH
Confidence 44332 222 112 357899999999874 6788899876654443 222222 222222111 00011
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
.+...+.. .+++++||||+|++.++.++..|.+ .+..+..|||+|
T Consensus 226 ~l~~~l~~-~~~~~~IVf~~sr~~~e~l~~~L~~----------------------------------~g~~~~~~h~~l 270 (523)
T 1oyw_A 226 QLMRYVQE-QRGKSGIIYCNSRAKVEDTAARLQS----------------------------------KGISAAAYHAGL 270 (523)
T ss_dssp HHHHHHHH-TTTCCEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTS
T ss_pred HHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHHH----------------------------------CCCCEEEecCCC
Confidence 22233332 3677999999999999999988743 256799999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
++++|..+++.|++|+++|||||+++++|||+|++++||+ |+. +.+..+|.||+|||||.| .+|.|++
T Consensus 271 ~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~----~~~------p~s~~~y~Qr~GRaGR~g--~~~~~~l 338 (523)
T 1oyw_A 271 ENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDI------PRNIESYYQETGRAGRDG--LPAEAML 338 (523)
T ss_dssp CHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSC------CSSHHHHHHHHTTSCTTS--SCEEEEE
T ss_pred CHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE----ECC------CCCHHHHHHHhccccCCC--CCceEEE
Confidence 9999999999999999999999999999999999999998 442 336999999999999987 7899999
Q ss_pred EecCCcHHHHHHhhcC
Q 043190 1066 LVHEPKKSFYKKFLYE 1081 (1492)
Q Consensus 1066 l~~~~~~~~~~~~l~~ 1081 (1492)
++.+.+....+.++.+
T Consensus 339 ~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 339 FYDPADMAWLRRCLEE 354 (523)
T ss_dssp EECHHHHHHHHHHHHT
T ss_pred EeCHHHHHHHHHHHhc
Confidence 9998888777777765
No 30
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-38 Score=393.00 Aligned_cols=330 Identities=17% Similarity=0.214 Sum_probs=211.5
Q ss_pred CCCCCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccCC-CceEEEEcccHHHHHHHHHHHHHHhhhcc
Q 043190 685 NFSHFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQS-DMKVVYIAPLKAIVRERMNDWKDRLVSQL 762 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~~-~~~~l~i~P~r~La~q~~~~~~~~~~~~~ 762 (1492)
|+..|+++|.++++.++.+ +++++++||||||||++|+++++..+.... +++++|++|+++|+.|+++++.+.+...
T Consensus 138 g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~- 216 (508)
T 3fho_A 138 XXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYT- 216 (508)
T ss_dssp -CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTS-
T ss_pred cccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCcc-
Confidence 7888999999999999844 489999999999999999999999876543 5699999999999999999998855433
Q ss_pred CCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhcc
Q 043190 763 GKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 763 g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~ 842 (1492)
+..+....++.... .....++|+|+||+++...+.+. ...+.++++||+||||.+.+..+ +...+.+ +....
T Consensus 217 ~~~~~~~~~~~~~~-~~~~~~~Ivv~T~~~l~~~l~~~--~~~~~~~~lIIiDEaH~~~~~~~--~~~~~~~---i~~~~ 288 (508)
T 3fho_A 217 EVKTAFGIKDSVPK-GAKIDAQIVIGTPGTVMDLMKRR--QLDARDIKVFVLDEADNMLDQQG--LGDQSMR---IKHLL 288 (508)
T ss_dssp SCCEEC-----------CCCCSEEEECHHHHHHHHHTT--CSCCTTCCEEEECCHHHHTTC----CHHHHHH---HHHHS
T ss_pred CeeEEEEeCCcccc-cccCCCCEEEECHHHHHHHHHcC--CccccCCCEEEEechhhhcccCC--cHHHHHH---HHHhC
Confidence 55554444443322 22337899999999987766652 23478899999999998865322 1122222 22234
Q ss_pred CCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCee
Q 043190 843 ERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVL 921 (1492)
Q Consensus 843 ~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L 921 (1492)
..+.+++++|||+++ .+.+..++......+...........+....... ............+.....++++|
T Consensus 289 ~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~k~~~l~~ll~~~~~~~~L 361 (508)
T 3fho_A 289 PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDC-------QSEEHKYNVLVELYGLLTIGQSI 361 (508)
T ss_dssp CTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC---------CHHHHHHHHHHHC---CCCEE
T ss_pred CcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEEC-------CchHHHHHHHHHHHHhcCCCcEE
Confidence 568899999999987 5566665544332221111111111111111000 00011112233334445678999
Q ss_pred EEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCC
Q 043190 922 IFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNK 1001 (1492)
Q Consensus 922 IF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~ 1001 (1492)
|||++++.++.++..|.+ .+.++..+||+++..+|..+++.|++|+
T Consensus 362 VF~~s~~~a~~l~~~L~~----------------------------------~~~~v~~~hg~~~~~~R~~il~~f~~g~ 407 (508)
T 3fho_A 362 IFCKKKDTAEEIARRMTA----------------------------------DGHTVACLTGNLEGAQRDAIMDSFRVGT 407 (508)
T ss_dssp EBCSSTTTTTHHHHHHTT----------------------------------TTCCCCEEC-----CTTGGGTHHHHSSS
T ss_pred EEECCHHHHHHHHHHHHh----------------------------------CCCcEEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999998877732 2567899999999999999999999999
Q ss_pred ceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 1002 IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 1002 ~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
.+|||||+++++|+|+|++++||+ |+.+..+..+.+..+|+||+|||||.| ..|.|++++.+.
T Consensus 408 ~~VLVaT~~l~~GiDip~v~~VI~----~~~p~~~~~~~s~~~~~Qr~GRagR~g--~~g~~i~l~~~~ 470 (508)
T 3fho_A 408 SKVLVTTNVIARGIDVSQVNLVVN----YDMPLDQAGRPDPQTYLHRIGRTGRFG--RVGVSINFVHDK 470 (508)
T ss_dssp CCCCEECC-----CCCTTCCEEEC--------CC-----CTHHHHHTTSCCC-------CEEEEEECTT
T ss_pred CeEEEeCChhhcCCCccCCCEEEE----ECCCCcccCCCCHHHHHHHhhhcCCCC--CCcEEEEEEeCh
Confidence 999999999999999999999997 554433223357889999999999987 789999998754
No 31
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.7e-36 Score=363.45 Aligned_cols=324 Identities=20% Similarity=0.285 Sum_probs=242.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
||..|+|+|.++++.++++++++++++|||||||++++++++..+...++.+++|++|+++|+.|+++++.+.+... +.
T Consensus 25 g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~ 103 (367)
T 1hv8_A 25 GFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNK-NL 103 (367)
T ss_dssp TCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSS-CC
T ss_pred CCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCC-Cc
Confidence 99999999999999998666899999999999999999999998876667899999999999999999998866544 77
Q ss_pred EEEEEcCCCCcch--hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhc
Q 043190 765 EMVEMTGDYTPDL--MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQ 841 (1492)
Q Consensus 765 ~v~~~~g~~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~ 841 (1492)
++....|+..... ....+++|+|+||+++...+... ...+.+++++|+||||.+.+ .+...+.. +...
T Consensus 104 ~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~--~~~~~~~~~iIiDEah~~~~~~~~~~~~~-------~~~~ 174 (367)
T 1hv8_A 104 KIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRG--TLNLKNVKYFILDEADEMLNMGFIKDVEK-------ILNA 174 (367)
T ss_dssp CEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTT--CSCTTSCCEEEEETHHHHHTTTTHHHHHH-------HHHT
T ss_pred eEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcC--CcccccCCEEEEeCchHhhhhchHHHHHH-------HHHh
Confidence 8888888765432 23347899999999987777652 33478899999999998743 22222222 2223
Q ss_pred cCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCC
Q 043190 842 TERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKP 919 (1492)
Q Consensus 842 ~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 919 (1492)
.+...+++++|||+++. +.+..+++... ..... ....+......... ......+...+. ..+++
T Consensus 175 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~-------~~~~~~l~~~l~--~~~~~ 240 (367)
T 1hv8_A 175 CNKDKRILLFSATMPREILNLAKKYMGDYS--FIKAK---INANIEQSYVEVNE-------NERFEALCRLLK--NKEFY 240 (367)
T ss_dssp SCSSCEEEEECSSCCHHHHHHHHHHCCSEE--EEECC---SSSSSEEEEEECCG-------GGHHHHHHHHHC--STTCC
T ss_pred CCCCceEEEEeeccCHHHHHHHHHHcCCCe--EEEec---CCCCceEEEEEeCh-------HHHHHHHHHHHh--cCCCc
Confidence 45688999999999763 33344443221 11111 11122222111110 000011112222 46778
Q ss_pred eeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc
Q 043190 920 VLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN 999 (1492)
Q Consensus 920 ~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~ 999 (1492)
+||||++++.++.++..|.+ .+.++..+||+++..+|..+++.|++
T Consensus 241 ~lvf~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~~~~~~~~~r~~~~~~f~~ 286 (367)
T 1hv8_A 241 GLVFCKTKRDTKELASMLRD----------------------------------IGFKAGAIHGDLSQSQREKVIRLFKQ 286 (367)
T ss_dssp EEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECSSSCHHHHHHHHHHHHT
T ss_pred EEEEECCHHHHHHHHHHHHh----------------------------------cCCCeEEeeCCCCHHHHHHHHHHHHc
Confidence 99999999999999887743 25678999999999999999999999
Q ss_pred CCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHh
Q 043190 1000 NKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 1000 g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~ 1078 (1492)
|+.+|||||+++++|+|+|++++||+ |+ .+.+..+|.||+|||||.| ..|.+++++.+.+...+..+
T Consensus 287 ~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~------~~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~~i 353 (367)
T 1hv8_A 287 KKIRILIATDVMSRGIDVNDLNCVIN----YH------LPQNPESYMHRIGRTGRAG--KKGKAISIINRREYKKLRYI 353 (367)
T ss_dssp TSSSEEEECTTHHHHCCCSCCSEEEE----SS------CCSCHHHHHHHSTTTCCSS--SCCEEEEEECTTSHHHHHHH
T ss_pred CCCeEEEECChhhcCCCcccCCEEEE----ec------CCCCHHHhhhcccccccCC--CccEEEEEEcHHHHHHHHHH
Confidence 99999999999999999999999997 33 2346899999999999987 78999999998887665544
No 32
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.7e-35 Score=350.09 Aligned_cols=314 Identities=19% Similarity=0.272 Sum_probs=234.2
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
+||..|+|+|.++++.++ +++++++++|||+|||+++++++++. +.+++|++|+++|+.|+++.+.+. ....+
T Consensus 12 ~g~~~l~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~-~~~~~ 84 (337)
T 2z0m_A 12 MGFKNFTEVQSKTIPLML-QGKNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTRELTRQVASHIRDI-GRYMD 84 (337)
T ss_dssp TTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSHHHHHHHHHHHHHH-TTTSC
T ss_pred cCCCCCCHHHHHHHHHHh-cCCCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCHHHHHHHHHHHHHH-hhhcC
Confidence 399999999999999998 67899999999999999999999875 689999999999999999999874 34447
Q ss_pred CEEEEEcCCCCcch--hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhh
Q 043190 764 KEMVEMTGDYTPDL--MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISS 840 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~ 840 (1492)
.++..++|+..... ....+++|+|+||+++..++.+. ...+.+++++|+||||++.+ .+...+..++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~------- 155 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKG--VIDLSSFEIVIIDEADLMFEMGFIDDIKIILA------- 155 (337)
T ss_dssp CCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTT--SCCGGGCSEEEEESHHHHHHTTCHHHHHHHHH-------
T ss_pred CcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcC--CcchhhCcEEEEEChHHhhccccHHHHHHHHh-------
Confidence 88999988766432 23456899999999998776652 23467899999999998743 33333333322
Q ss_pred ccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCC
Q 043190 841 QTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTK 918 (1492)
Q Consensus 841 ~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 918 (1492)
..+...+++++|||+++. +.+..+++... . .. .......+...+..... ........+ ....++
T Consensus 156 ~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~-~-~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~ 221 (337)
T 2z0m_A 156 QTSNRKITGLFSATIPEEIRKVVKDFITNYE-E-IE--ACIGLANVEHKFVHVKD---------DWRSKVQAL-RENKDK 221 (337)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHSCSCE-E-EE--CSGGGGGEEEEEEECSS---------SSHHHHHHH-HTCCCS
T ss_pred hCCcccEEEEEeCcCCHHHHHHHHHhcCCce-e-ee--cccccCCceEEEEEeCh---------HHHHHHHHH-HhCCCC
Confidence 344578899999999763 33455554321 1 11 11111222222221111 111122222 335678
Q ss_pred CeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHh
Q 043190 919 PVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFA 998 (1492)
Q Consensus 919 ~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 998 (1492)
++||||++++.++.++..| ..+..+||+++..+|..+++.|+
T Consensus 222 ~~lvf~~~~~~~~~l~~~l--------------------------------------~~~~~~~~~~~~~~r~~~~~~f~ 263 (337)
T 2z0m_A 222 GVIVFVRTRNRVAKLVRLF--------------------------------------DNAIELRGDLPQSVRNRNIDAFR 263 (337)
T ss_dssp SEEEECSCHHHHHHHHTTC--------------------------------------TTEEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCHHHHHHHHHHh--------------------------------------hhhhhhcCCCCHHHHHHHHHHHH
Confidence 9999999999998877544 14788999999999999999999
Q ss_pred cCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHHHHHh
Q 043190 999 NNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKF 1078 (1492)
Q Consensus 999 ~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~~~~~ 1078 (1492)
+|+.+|||||+++++|+|+|++++||+ |++ +.+..+|+||+|||||.| ..|.|++++. .+....+++
T Consensus 264 ~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~------~~s~~~~~Q~~GR~gR~g--~~g~~~~~~~-~~~~~~~~i 330 (337)
T 2z0m_A 264 EGEYDMLITTDVASRGLDIPLVEKVIN----FDA------PQDLRTYIHRIGRTGRMG--RKGEAITFIL-NEYWLEKEV 330 (337)
T ss_dssp TTSCSEEEECHHHHTTCCCCCBSEEEE----SSC------CSSHHHHHHHHTTBCGGG--CCEEEEEEES-SCHHHHHHH
T ss_pred cCCCcEEEEcCccccCCCccCCCEEEE----ecC------CCCHHHhhHhcCccccCC--CCceEEEEEe-CcHHHHHHH
Confidence 999999999999999999999999997 443 336899999999999987 7899999998 665555443
No 33
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4.6e-37 Score=373.96 Aligned_cols=339 Identities=17% Similarity=0.230 Sum_probs=138.6
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
++....+.+. ||..|+|+|.++++.++ .++++++++|||+|||++|.+|++..+... .+++++|++|+++|+.|++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~-~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~ 106 (394)
T 1fuu_A 28 LDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQ 106 (394)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHH-HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHH
Confidence 3444444444 99999999999999998 678999999999999999999999987653 3679999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcch--hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDL--MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPIL 828 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~ 828 (1492)
+.+.+.+... +.++..++|+..... ....+++|+|+||+++...+.+. ...+.+++++|+||||++.+ .+...+
T Consensus 107 ~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~vIiDEah~~~~~~~~~~~ 183 (394)
T 1fuu_A 107 KVVMALAFHM-DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR--RFRTDKIKMFILDEADEMLSSGFKEQI 183 (394)
T ss_dssp HHHHHHTTTS-CCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred HHHHHHhccC-CeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhC--CcchhhCcEEEEEChHHhhCCCcHHHH
Confidence 9998755443 888999998876432 22336899999999987776652 33467899999999998743 343333
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChh
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP 906 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 906 (1492)
..++. ..+...+++++|||+++. +....+++.+. .+........+..+......... ......
T Consensus 184 ~~~~~-------~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 248 (394)
T 1fuu_A 184 YQIFT-------LLPPTTQVVLLSATMPNDVLEVTTKFMRNPV-RILVKKDELTLEGIKQFYVNVEE-------EEYKYE 248 (394)
T ss_dssp HHHHH-------HSCTTCEEEEECSSCCHHHHHHHHHHCCSCE-EEEECC------------------------------
T ss_pred HHHHH-------hCCCCceEEEEEEecCHHHHHHHHHhcCCCe-EEEecCccccCCCceEEEEEcCc-------hhhHHH
Confidence 33332 234678999999999863 23334443221 11111111111111111100000 000111
Q ss_pred HHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCC
Q 043190 907 AYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLN 986 (1492)
Q Consensus 907 ~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~ 986 (1492)
....+......+++||||++++.++.++..|.+ .+..+..+||+++
T Consensus 249 ~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~~~~~~ 294 (394)
T 1fuu_A 249 CLTDLYDSISVTQAVIFCNTRRKVEELTTKLRN----------------------------------DKFTVSAIYSDLP 294 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHH----------------------------------cCCeEEEeeCCCC
Confidence 122222334567999999999999988877633 1456889999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEE
Q 043190 987 DKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVIL 1066 (1492)
Q Consensus 987 ~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l 1066 (1492)
..+|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| ..|.|+++
T Consensus 295 ~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~----~~~------p~s~~~~~Qr~GR~~R~g--~~g~~~~~ 362 (394)
T 1fuu_A 295 QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDL------PANKENYIHRIGRGGRFG--RKGVAINF 362 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE----eCC------CCCHHHHHHHcCcccCCC--CCceEEEE
Confidence 999999999999999999999999999999999999997 432 335789999999999987 78999999
Q ss_pred ecCCcHHHHHHh
Q 043190 1067 VHEPKKSFYKKF 1078 (1492)
Q Consensus 1067 ~~~~~~~~~~~~ 1078 (1492)
+.+.+...+..+
T Consensus 363 ~~~~~~~~~~~l 374 (394)
T 1fuu_A 363 VTNEDVGAMREL 374 (394)
T ss_dssp ------------
T ss_pred EchhHHHHHHHH
Confidence 988776554433
No 34
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.7e-35 Score=358.59 Aligned_cols=327 Identities=15% Similarity=0.150 Sum_probs=229.6
Q ss_pred hHhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 679 IYEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 679 ~~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
.++..++| .|+|+|.++++.++ .+++++++||||||||++|+++++.... ++++++|++|+++|+.|+++.+.+ +
T Consensus 13 ~l~~~~~~-~~~~~Q~~~i~~i~-~~~~~lv~apTGsGKT~~~l~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~-~ 87 (414)
T 3oiy_A 13 FFKKKFGK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLAR--KGKKSALVFPTVTLVKQTLERLQK-L 87 (414)
T ss_dssp HHHHHHSS-CCCHHHHHHHHHHT-TTCCEECCSCSSSSHHHHHHHHHHHHHT--TTCCEEEEESSHHHHHHHHHHHHH-H
T ss_pred HHHHhcCC-CCCHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHhc--CCCEEEEEECCHHHHHHHHHHHHH-H
Confidence 34555688 59999999999998 6789999999999999999999888764 478999999999999999999988 4
Q ss_pred hhccCCEEEEEcCCCCcchh-----c--cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC----------
Q 043190 759 VSQLGKEMVEMTGDYTPDLM-----A--LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG---------- 821 (1492)
Q Consensus 759 ~~~~g~~v~~~~g~~~~~~~-----~--~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~---------- 821 (1492)
.. .|+++..++|+.....+ . ...++|+|+||+++...+.. ..+.++++||+||||++.
T Consensus 88 ~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~----~~~~~~~~iViDEaH~~~~~~~~~d~~l 162 (414)
T 3oiy_A 88 AD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNIDTLL 162 (414)
T ss_dssp CC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH----HTTCCCSEEEESCHHHHHHCHHHHHHHH
T ss_pred cc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH----hccccccEEEEeChHhhhhccchhhhHH
Confidence 44 58899999998875221 1 12489999999998776654 335689999999999764
Q ss_pred --CCCccH-HHHHHHHHHH--hhhccC--CceEEEEEcCC-CCCh---HHHHHHhcCCcceeEecCCCccccCcEEEEec
Q 043190 822 --AERGPI-LEVIVSRMRY--ISSQTE--RAVRFIGLSTA-LANA---GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQG 890 (1492)
Q Consensus 822 --~~~g~~-~~~i~~~l~~--~~~~~~--~~~~ii~lSAT-l~~~---~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~ 890 (1492)
..+.+. +..++..++. .....+ ...+++++||| .+.. .....+++..... .......+...+..
T Consensus 163 ~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~ 237 (414)
T 3oiy_A 163 MMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-----LVSVARNITHVRIS 237 (414)
T ss_dssp HHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC-----CCCCCCSEEEEEES
T ss_pred hhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc-----cccccccchheeec
Confidence 223333 4444444420 001111 57899999999 4432 2233444322211 11111122222211
Q ss_pred cCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHH
Q 043190 891 YPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNL 970 (1492)
Q Consensus 891 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 970 (1492)
. .....+...+.. .++++||||++++.|+.++..|..
T Consensus 238 ~----------~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~------------------------------- 274 (414)
T 3oiy_A 238 S----------RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKR------------------------------- 274 (414)
T ss_dssp S----------CCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHH-------------------------------
T ss_pred c----------CHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHH-------------------------------
Confidence 1 011122333333 348999999999999999987743
Q ss_pred HHHhccceE-eecCCCCHHHHHHHHHHHhcCCceEEEe----ccccccccCCCC-cEEEEecceeeeCccCccccCCHHH
Q 043190 971 RQTLQFGIG-LHHAGLNDKDRSLVEELFANNKIQVLVC----TSTLAWGVNLPA-HLVIIKGTEYYDGKTKRYVDFPITD 1044 (1492)
Q Consensus 971 ~~~~~~~v~-~~h~~l~~~~R~~v~~~f~~g~~~vLva----T~~l~~Gvdip~-~~~VI~~~~~~~~~~~~~~~~~~~~ 1044 (1492)
.+..+. .+||. +|. ++.|++|+++|||| |+++++|+|+|+ +++||+ |+.+. ..+..+
T Consensus 275 ---~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~----~~~p~----~~~~~~ 337 (414)
T 3oiy_A 275 ---FKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF----WGTPS----GPDVYT 337 (414)
T ss_dssp ---TTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE----ESCCT----TTCHHH
T ss_pred ---cCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE----ECCCC----CCCHHH
Confidence 256677 88884 444 99999999999999 999999999999 999997 55331 046899
Q ss_pred HHHhhcccCCCCCC--CceEEEEEecCCcH-HHHHHhhc
Q 043190 1045 ILQMMGRAGRPQYD--QHGKAVILVHEPKK-SFYKKFLY 1080 (1492)
Q Consensus 1045 ~~Qr~GRagR~g~~--~~G~~i~l~~~~~~-~~~~~~l~ 1080 (1492)
|+||+|||||.|.+ ..|.+++++.+... ..+++++.
T Consensus 338 y~qr~GR~gR~g~~~~~~g~~i~~~~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 338 YIQASGRSSRILNGVLVKGVSVIFEEDEEIFESLKTRLL 376 (414)
T ss_dssp HHHHHGGGCCEETTEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHhCccccCCCCCCcceEEEEEEccHHHHHHHHHHhc
Confidence 99999999999866 58999999943221 33444455
No 35
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.8e-33 Score=359.01 Aligned_cols=343 Identities=19% Similarity=0.272 Sum_probs=187.7
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC---CceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS---DMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.|+|+|.++++.++ .++++++++|||||||++|.+|+++.+...+ ++++||++|+++|+.|+++.+.+.+... +.
T Consensus 7 ~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~ 84 (556)
T 4a2p_A 7 KARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ-GY 84 (556)
T ss_dssp -CCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-TC
T ss_pred CCCHHHHHHHHHHH-cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-Cc
Confidence 59999999999998 6789999999999999999999999887655 7899999999999999999999866555 88
Q ss_pred EEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHH-hhh
Q 043190 765 EMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY-ISS 840 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~-~~~ 840 (1492)
++..++|+...... ...+++|+|+||+++...+.... ...+.++++||+||||++.+. ++ +..++.++.. ...
T Consensus 85 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~~vViDEah~~~~~-~~-~~~~~~~~~~~~~~ 161 (556)
T 4a2p_A 85 SVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT-LTSLSIFTLMIFDECHNTTGN-HP-YNVLMTRYLEQKFN 161 (556)
T ss_dssp CEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSS-CCCSTTCSEEEEETGGGCSTT-SH-HHHHHHHHHHHHHC
T ss_pred eEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCc-ccccccCCEEEEECCcccCCc-ch-HHHHHHHHHHhhhc
Confidence 99999998754321 22468999999999987776522 125789999999999998643 33 5554433321 111
Q ss_pred ccCCceEEEEEcCCCCC--hHHHHHH----------hcCCcceeEecCCC--------ccccCcEEEEec-cC-------
Q 043190 841 QTERAVRFIGLSTALAN--AGDLADW----------LGVGEIGLFNFKPS--------VRPVPLEVHIQG-YP------- 892 (1492)
Q Consensus 841 ~~~~~~~ii~lSATl~~--~~~~~~~----------l~~~~~~~~~~~~~--------~r~~~l~~~~~~-~~------- 892 (1492)
...+..++++||||++. ..++.+| ++.... ...... .++......... ..
T Consensus 162 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (556)
T 4a2p_A 162 SASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAI--STVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 239 (556)
T ss_dssp C---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEE--ECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHH
T ss_pred ccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEe--cchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHH
Confidence 12456899999999943 3333333 332110 000000 000000000000 00
Q ss_pred ------------------------Cccccc-----cc-------------------------------------------
Q 043190 893 ------------------------GKFYCP-----RM------------------------------------------- 900 (1492)
Q Consensus 893 ------------------------~~~~~~-----~~------------------------------------------- 900 (1492)
...+.. ..
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (556)
T 4a2p_A 240 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 319 (556)
T ss_dssp HHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 000000 00
Q ss_pred ---------------------------------------------------cccChhHHHHHhhc---CCCCCeeEEecC
Q 043190 901 ---------------------------------------------------NSMNKPAYAAICTH---SPTKPVLIFVSS 926 (1492)
Q Consensus 901 ---------------------------------------------------~~~~~~~~~~l~~~---~~~~~~LIF~~s 926 (1492)
......+...+... .+++++||||++
T Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~ 399 (556)
T 4a2p_A 320 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 399 (556)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 00000011111111 567899999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-CCceEE
Q 043190 927 RRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN-NKIQVL 1005 (1492)
Q Consensus 927 ~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~-g~~~vL 1005 (1492)
+..+..++..|.+..... .. .. ....+.+...+||+|++++|..+++.|++ |+++||
T Consensus 400 ~~~~~~l~~~L~~~~~~~-----~~--~~---------------~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vL 457 (556)
T 4a2p_A 400 RALVSALKKCMEENPILN-----YI--KP---------------GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLL 457 (556)
T ss_dssp HHHHHHHHHHHTTCSGGG-----SC--CE---------------EC------------------------------CCEE
T ss_pred HHHHHHHHHHHHhCCCcc-----ee--ee---------------eEEEccCCcccccccCHHHHHHHHHHhcccCceEEE
Confidence 999999998774320000 00 00 01124556678999999999999999999 999999
Q ss_pred EeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 1006 VCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1006 vaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
|||+++++|+|+|++++||+ ||++ .++.+|+||+|| ||. ..|.+++++.+.+..
T Consensus 458 vaT~~~~~GiDip~v~~VI~----~d~p------~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 458 IATSVADEGIDIVQCNLVVL----YEYS------GNVTKMIQVRGR-GRA---AGSKCILVTSKTEVV 511 (556)
T ss_dssp EEEC-----------CEEEE----ETCC------SCHHHHHHC------------CCEEEEESCHHHH
T ss_pred EEcCchhcCCCchhCCEEEE----eCCC------CCHHHHHHhcCC-CCC---CCceEEEEEeCcchH
Confidence 99999999999999999998 6643 368999999999 996 589999999876643
No 36
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.5e-32 Score=350.47 Aligned_cols=345 Identities=18% Similarity=0.214 Sum_probs=212.7
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC---CceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS---DMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.|+|+|.++++.++ .++++++++|||||||++|.+|+++.+...+ ++++||++|+++|+.|+++.+.+.+... +.
T Consensus 4 ~~~~~Q~~~i~~~~-~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~ 81 (555)
T 3tbk_A 4 KPRNYQLELALPAK-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL-GY 81 (555)
T ss_dssp CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT-TC
T ss_pred CCcHHHHHHHHHHh-CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC-Cc
Confidence 49999999999998 6889999999999999999999999887655 7899999999999999999999866555 88
Q ss_pred EEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHh--h
Q 043190 765 EMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYI--S 839 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~--~ 839 (1492)
++..++|+...... ...+++|+|+||+++...+.... ...+.++++||+||||++.+.. .+..++.++... .
T Consensus 82 ~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~-~~~~~~~~~vViDEah~~~~~~--~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 82 NIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGA-IPSLSVFTLMIFDECHNTSKNH--PYNQIMFRYLDHKLG 158 (555)
T ss_dssp CEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSS-SCCGGGCSEEEETTGGGCSTTC--HHHHHHHHHHHHHTS
T ss_pred EEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCc-ccccccCCEEEEECccccCCcc--hHHHHHHHHHHhhhc
Confidence 99999998754432 22368999999999987776522 1257889999999999986532 255554433221 1
Q ss_pred hccCCceEEEEEcCCCCCh---------H---HHHHHhcCCcceeEe-----c-CCCccccCcEEEEeccC---------
Q 043190 840 SQTERAVRFIGLSTALANA---------G---DLADWLGVGEIGLFN-----F-KPSVRPVPLEVHIQGYP--------- 892 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~~---------~---~~~~~l~~~~~~~~~-----~-~~~~r~~~l~~~~~~~~--------- 892 (1492)
.......+++++|||+++. + .+..+++........ + ....++...........
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 1123568999999999652 1 233444432110000 0 00001110000000000
Q ss_pred ------------------------Cccccc-----ccc------------------------------------------
Q 043190 893 ------------------------GKFYCP-----RMN------------------------------------------ 901 (1492)
Q Consensus 893 ------------------------~~~~~~-----~~~------------------------------------------ 901 (1492)
...+.. ...
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 000000 000
Q ss_pred -------------------------------------------------ccCh---hHHHHHh---hcCCCCCeeEEecC
Q 043190 902 -------------------------------------------------SMNK---PAYAAIC---THSPTKPVLIFVSS 926 (1492)
Q Consensus 902 -------------------------------------------------~~~~---~~~~~l~---~~~~~~~~LIF~~s 926 (1492)
.... .+...+. ...+++++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 0000 0011111 12456899999999
Q ss_pred hHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-CCceEE
Q 043190 927 RRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN-NKIQVL 1005 (1492)
Q Consensus 927 ~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~-g~~~vL 1005 (1492)
+..++.++..|............ ...+.+...+||+|++++|..+++.|++ |+++||
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~----------------------~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vL 456 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPG----------------------ILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNIL 456 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEE----------------------ECCC--------------------------CCSEE
T ss_pred HHHHHHHHHHHhhCcCcCceeee----------------------EEEecCCcccccccCHHHHHHHHHHHhcCCCeeEE
Confidence 99999999888653110000000 1123456677899999999999999999 999999
Q ss_pred EeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 1006 VCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1006 vaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
|||+++++|+|+|++++||+ ||.+ .++.+|+||+|| ||. ..|.+++++.+.+..
T Consensus 457 vaT~~~~~GlDlp~v~~VI~----~d~p------~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 457 IATSVADEGIDIAECNLVIL----YEYV------GNVIKMIQTRGR-GRA---RDSKCFLLTSSADVI 510 (555)
T ss_dssp EECCCTTCCEETTSCSEEEE----ESCC------SSCCCEECSSCC-CTT---TSCEEEEEESCHHHH
T ss_pred EEcchhhcCCccccCCEEEE----eCCC------CCHHHHHHhcCc-CcC---CCceEEEEEcCCCHH
Confidence 99999999999999999998 6643 357789999999 885 689999999876654
No 37
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=8e-33 Score=352.85 Aligned_cols=319 Identities=18% Similarity=0.279 Sum_probs=217.1
Q ss_pred cCCCCCCHHHHHHHHhhhcC-----CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 684 YNFSHFNPIQTQIFHILYHT-----DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~-----~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
++| .|+++|.++++.++.. ..+++++||||||||++|++|++..+.. +.+++|++||++||.|+++.+.+.+
T Consensus 365 lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--g~qvlvlaPtr~La~Q~~~~l~~~~ 441 (780)
T 1gm5_A 365 LPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--GFQTAFMVPTSILAIQHYRRTVESF 441 (780)
T ss_dssp SSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--TSCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 488 7999999999988732 2599999999999999999999998765 7899999999999999999999877
Q ss_pred hhccCCEEEEEcCCCCcchhc-------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHH
Q 043190 759 VSQLGKEMVEMTGDYTPDLMA-------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVI 831 (1492)
Q Consensus 759 ~~~~g~~v~~~~g~~~~~~~~-------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i 831 (1492)
... |+++..++|+.....+. ...++|+|+||+.+.. ...+.+++++|+||+|.++.....
T Consensus 442 ~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------~~~~~~l~lVVIDEaHr~g~~qr~----- 508 (780)
T 1gm5_A 442 SKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-------DVHFKNLGLVIIDEQHRFGVKQRE----- 508 (780)
T ss_dssp TCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------CCCCSCCCEEEEESCCCC-----C-----
T ss_pred hhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-------hhhccCCceEEecccchhhHHHHH-----
Confidence 654 89999999988654321 2358999999986632 234789999999999987532110
Q ss_pred HHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHH
Q 043190 832 VSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI 911 (1492)
Q Consensus 832 ~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 911 (1492)
.........++++||||+.....-..+++.....+....+..+ .++...+.. .......+..+
T Consensus 509 ------~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r-~~i~~~~~~----------~~~~~~l~~~i 571 (780)
T 1gm5_A 509 ------ALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGR-KEVQTMLVP----------MDRVNEVYEFV 571 (780)
T ss_dssp ------CCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSC-CCCEECCCC----------SSTHHHHHHHH
T ss_pred ------HHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCC-cceEEEEec----------cchHHHHHHHH
Confidence 0111234688999999975432222333333322222111111 122211110 00111233333
Q ss_pred h-hcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHH-H-hccceEeecCCCCHH
Q 043190 912 C-THSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQ-T-LQFGIGLHHAGLNDK 988 (1492)
Q Consensus 912 ~-~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~~v~~~h~~l~~~ 988 (1492)
. ....+++++|||++...++.+...- .+++... |.. . .+.++..+||+|+++
T Consensus 572 ~~~l~~g~qvlVf~~~ie~se~l~~~~-----------------a~~l~~~--------L~~~~~~~~~v~~lHG~m~~~ 626 (780)
T 1gm5_A 572 RQEVMRGGQAFIVYPLIEESDKLNVKS-----------------AVEMYEY--------LSKEVFPEFKLGLMHGRLSQE 626 (780)
T ss_dssp HHHTTTSCCBCCBCCCC--------CH-----------------HHHHHHS--------GGGSCC---CBCCCCSSSCCS
T ss_pred HHHHhcCCcEEEEecchhhhhhhhHHH-----------------HHHHHHH--------HHhhhcCCCcEEEEeCCCCHH
Confidence 3 2356789999999876543221000 0011111 111 1 146799999999999
Q ss_pred HHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 989 DRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 989 ~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
+|..+++.|++|+++|||||+++++|+|+|++++||. |+++. ++.+.+.||+||+||.| ..|.|++++.
T Consensus 627 eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi----~d~~r-----~~l~~l~Qr~GRaGR~g--~~g~~ill~~ 695 (780)
T 1gm5_A 627 EKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENPER-----FGLAQLHQLRGRVGRGG--QEAYCFLVVG 695 (780)
T ss_dssp CSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSCSS-----SCTTHHHHHHHTSCCSS--TTCEEECCCC
T ss_pred HHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE----eCCCC-----CCHHHHHHHhcccCcCC--CCCEEEEEEC
Confidence 9999999999999999999999999999999999997 44331 25788999999999987 8899999987
Q ss_pred CCc
Q 043190 1069 EPK 1071 (1492)
Q Consensus 1069 ~~~ 1071 (1492)
+..
T Consensus 696 ~~~ 698 (780)
T 1gm5_A 696 DVG 698 (780)
T ss_dssp SCC
T ss_pred CCC
Confidence 433
No 38
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.7e-32 Score=356.68 Aligned_cols=349 Identities=16% Similarity=0.181 Sum_probs=195.4
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC---CceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS---DMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
+|+..|+|+|.++++.++ .++|+++++|||||||++|.+++++.+...+ +++++|++|+++|+.|+++.+.+.+..
T Consensus 9 ~g~~~lr~~Q~~~i~~~l-~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPAM-KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp TC--CCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred cCCCCccHHHHHHHHHHH-cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 488899999999999998 6899999999999999999999998776532 279999999999999999999886644
Q ss_pred ccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHH
Q 043190 761 QLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY 837 (1492)
Q Consensus 761 ~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~ 837 (1492)
.|+++..++|+..... ....+++|+|+||+++...+..... ..+.++++|||||||++.... .+..++.++..
T Consensus 88 -~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~-~~l~~~~~vViDEaH~~~~~~--~~~~i~~~~l~ 163 (696)
T 2ykg_A 88 -HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTI-PSLSIFTLMIFDECHNTSKQH--PYNMIMFNYLD 163 (696)
T ss_dssp -TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSS-CCGGGCSEEEEETGGGCSTTC--HHHHHHHHHHH
T ss_pred -CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcc-cccccccEEEEeCCCcccCcc--cHHHHHHHHHH
Confidence 3889999999865432 1124689999999999777765221 147889999999999986432 34444433321
Q ss_pred --hhhccCCceEEEEEcCCCCC---------hHHHHHHhcCCcceeEecCCC---------ccccCcEEEEec-------
Q 043190 838 --ISSQTERAVRFIGLSTALAN---------AGDLADWLGVGEIGLFNFKPS---------VRPVPLEVHIQG------- 890 (1492)
Q Consensus 838 --~~~~~~~~~~ii~lSATl~~---------~~~~~~~l~~~~~~~~~~~~~---------~r~~~l~~~~~~------- 890 (1492)
+.......+++++||||+.+ .+.+...+.......+..... ..|.........
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 12223467899999999873 122222211100000000000 000000000000
Q ss_pred ----------------cCC----------cc-----c-------------------------------------------
Q 043190 891 ----------------YPG----------KF-----Y------------------------------------------- 896 (1492)
Q Consensus 891 ----------------~~~----------~~-----~------------------------------------------- 896 (1492)
+.. .. +
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence 000 00 0
Q ss_pred ---------------------------cc------------------------cccccChhHHHHHhhc---CCCCCeeE
Q 043190 897 ---------------------------CP------------------------RMNSMNKPAYAAICTH---SPTKPVLI 922 (1492)
Q Consensus 897 ---------------------------~~------------------------~~~~~~~~~~~~l~~~---~~~~~~LI 922 (1492)
.. ........+...+... .+++++||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 00 0000000011112221 35689999
Q ss_pred EecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-CC
Q 043190 923 FVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN-NK 1001 (1492)
Q Consensus 923 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~-g~ 1001 (1492)
||+++..++.++..|......... .. ....+.+...+||+|++++|..+++.|++ |+
T Consensus 404 F~~~~~~~~~l~~~L~~~~~~~~~-------~~---------------~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~ 461 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNPKLSFL-------KP---------------GILTGRGKTNQNTGMTLPAQKCILDAFKASGD 461 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCTTCCSC-------CE---------------EC-----------------------------C
T ss_pred EeCcHHHHHHHHHHHHhCCCcccc-------ce---------------eEEEccCCCccccCCCHHHHHHHHHHHHhcCC
Confidence 999999999999888552100000 00 00112334444889999999999999998 99
Q ss_pred ceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 1002 IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1002 ~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
++|||||+++++|||+|++++||+ ||.+ .+..+|+||+|| ||. ..|.|+++++..+..
T Consensus 462 ~~vLVaT~v~~~GiDip~v~~VI~----~d~p------~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~ 519 (696)
T 2ykg_A 462 HNILIATSVADEGIDIAQCNLVIL----YEYV------GNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVI 519 (696)
T ss_dssp CSCSEEEESSCCC---CCCSEEEE----ESCC--------CCCC-------------CCCEEEEEESCHHHH
T ss_pred ccEEEEechhhcCCcCccCCEEEE----eCCC------CCHHHHHHhhcc-CcC---CCceEEEEecCCCHH
Confidence 999999999999999999999998 6543 246689999999 996 589999999876653
No 39
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=6.3e-32 Score=355.45 Aligned_cols=349 Identities=19% Similarity=0.255 Sum_probs=196.6
Q ss_pred hcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC---CceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 683 LYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS---DMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 683 ~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
.+|+..|+|+|.++++.++ .++++++++|||||||++|.+|++..+...+ ++++||++|+++|+.|+++.|.+.+.
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l-~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp -----CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred hcCCCCCCHHHHHHHHHHH-hCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 3478889999999999998 6789999999999999999999999887654 78999999999999999999998766
Q ss_pred hccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHH
Q 043190 760 SQLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMR 836 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~ 836 (1492)
.. ++++..++|+..... ....+++|+|+||+++...++... ...+.++++|||||||++.... .+..++.++.
T Consensus 322 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~~iViDEaH~~~~~~--~~~~i~~~~~ 397 (797)
T 4a2q_A 322 RQ-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT-LTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYL 397 (797)
T ss_dssp GG-TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSS-CCCGGGCSEEEETTGGGCSTTS--HHHHHHHHHH
T ss_pred cC-CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhcc-ccccccCCEEEEECccccCCCc--cHHHHHHHHH
Confidence 55 899999999875432 223478999999999987776522 1257889999999999986532 3555554443
Q ss_pred Hh-hhccCCceEEEEEcCCCCC------------hHHHHHHhcCCcceeEecC------CCccccCcEEEEec-------
Q 043190 837 YI-SSQTERAVRFIGLSTALAN------------AGDLADWLGVGEIGLFNFK------PSVRPVPLEVHIQG------- 890 (1492)
Q Consensus 837 ~~-~~~~~~~~~ii~lSATl~~------------~~~~~~~l~~~~~~~~~~~------~~~r~~~l~~~~~~------- 890 (1492)
.. ........++++||||++. ...+...++.......... ...++.........
T Consensus 398 ~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 477 (797)
T 4a2q_A 398 EQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFA 477 (797)
T ss_dssp HHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHH
T ss_pred HHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHH
Confidence 22 1222456899999999953 1223333433211000000 00001000000000
Q ss_pred -------------------------cCCccccc-----cccc--------------------------------------
Q 043190 891 -------------------------YPGKFYCP-----RMNS-------------------------------------- 902 (1492)
Q Consensus 891 -------------------------~~~~~~~~-----~~~~-------------------------------------- 902 (1492)
.+...+.. ....
T Consensus 478 ~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~ 557 (797)
T 4a2q_A 478 AIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALI 557 (797)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 00000000 0000
Q ss_pred -----------------------------------------------------cCh---hHHHHHhh---cCCCCCeeEE
Q 043190 903 -----------------------------------------------------MNK---PAYAAICT---HSPTKPVLIF 923 (1492)
Q Consensus 903 -----------------------------------------------------~~~---~~~~~l~~---~~~~~~~LIF 923 (1492)
... .+...+.. ..+++++|||
T Consensus 558 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF 637 (797)
T 4a2q_A 558 ISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLF 637 (797)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEE
T ss_pred hhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEE
Confidence 000 01111111 2567899999
Q ss_pred ecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-CCc
Q 043190 924 VSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN-NKI 1002 (1492)
Q Consensus 924 ~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~-g~~ 1002 (1492)
|++++.+..++..|.+..... .+.. ....+.+...+||+|++.+|..+++.|++ |++
T Consensus 638 ~~~~~~~~~L~~~L~~~~~~~-----~~~~-----------------~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~ 695 (797)
T 4a2q_A 638 AKTRALVSALKKCMEENPILN-----YIKP-----------------GVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDN 695 (797)
T ss_dssp ESSHHHHHHHHHHHHTCSTTC-----SCCC-----------------EEC----------------------------CC
T ss_pred ECcHHHHHHHHHHHHhCcccc-----cccc-----------------eEEEecCCcccCCCCCHHHHHHHHHHhhccCCc
Confidence 999999999998875420000 0000 01124566778999999999999999999 999
Q ss_pred eEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 1003 QVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1003 ~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
+|||||+++++|||+|++++||+ ||.+ .++..|+||+|| ||. ..|.|++|++..+.
T Consensus 696 ~vLVaT~~~~~GIDlp~v~~VI~----yd~p------~s~~~~iQr~GR-GR~---~~g~~i~l~~~~~~ 751 (797)
T 4a2q_A 696 RLLIATSVADEGIDIVQCNLVVL----YEYS------GNVTKMIQVRGR-GRA---AGSKCILVTSKTEV 751 (797)
T ss_dssp SEEEEECC-------CCCSEEEE----ESCC------SCHHHHHTC-----------CCCEEEEECCHHH
T ss_pred eEEEEcCchhcCCCchhCCEEEE----eCCC------CCHHHHHHhcCC-CCC---CCceEEEEEeCCcH
Confidence 99999999999999999999998 6643 368999999999 996 68999999987654
No 40
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.98 E-value=2.1e-32 Score=365.08 Aligned_cols=280 Identities=15% Similarity=0.128 Sum_probs=195.4
Q ss_pred HhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 680 YEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 680 ~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
+...+||. | |+|.++++.++ .++|++++||||||||+ +.+|++..+.. .+.+++|++||++||.|+++.+.+.+.
T Consensus 50 ~~~~~g~~-p-~iQ~~ai~~il-~g~dvlv~apTGSGKTl-~~lp~l~~~~~-~~~~~lil~PtreLa~Q~~~~l~~l~~ 124 (1054)
T 1gku_B 50 FRKCVGEP-R-AIQKMWAKRIL-RKESFAATAPTGVGKTS-FGLAMSLFLAL-KGKRCYVIFPTSLLVIQAAETIRKYAE 124 (1054)
T ss_dssp HHTTTCSC-C-HHHHHHHHHHH-TTCCEECCCCBTSCSHH-HHHHHHHHHHT-TSCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCC-H-HHHHHHHHHHH-hCCCEEEEcCCCCCHHH-HHHHHHHHHhh-cCCeEEEEeccHHHHHHHHHHHHHHHh
Confidence 33445999 9 99999999998 78999999999999998 78888876654 478999999999999999999988554
Q ss_pred hccCC----EEEEEcCCCCcch-----hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHH
Q 043190 760 SQLGK----EMVEMTGDYTPDL-----MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEV 830 (1492)
Q Consensus 760 ~~~g~----~v~~~~g~~~~~~-----~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~ 830 (1492)
.. ++ ++..++|+..... ..+.+++|+|+||+++..++.+ +++++++||||||++.+ ++..++.
T Consensus 125 ~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~------L~~l~~lViDEah~~l~-~~~~~~~ 196 (1054)
T 1gku_B 125 KA-GVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE------LGHFDFIFVDDVDAILK-ASKNVDK 196 (1054)
T ss_dssp TT-CCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT------SCCCSEEEESCHHHHHT-STHHHHH
T ss_pred hc-CCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH------hccCCEEEEeChhhhhh-ccccHHH
Confidence 44 77 8999999876543 2223499999999998877664 66899999999998865 7888888
Q ss_pred HHHHHHHhh----hccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCC-ccccCcEEEEeccCCccccccccccCh
Q 043190 831 IVSRMRYIS----SQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPS-VRPVPLEVHIQGYPGKFYCPRMNSMNK 905 (1492)
Q Consensus 831 i~~~l~~~~----~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~-~r~~~l~~~~~~~~~~~~~~~~~~~~~ 905 (1492)
++.++.... .......+++++|||+++..++..++...... +..... .....+...... .....
T Consensus 197 i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~-i~v~~~~~~~~~i~~~~~~----------~~k~~ 265 (1054)
T 1gku_B 197 LLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN-FDIGSSRITVRNVEDVAVN----------DESIS 265 (1054)
T ss_dssp HHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC-CCCSCCEECCCCEEEEEES----------CCCTT
T ss_pred HHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE-EEccCcccCcCCceEEEec----------hhHHH
Confidence 887663211 11234567899999987753222222111100 000111 111112222110 01111
Q ss_pred hHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 906 PAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 906 ~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
.+...+... ++++||||++++.|+.++..|.+ . +.+..+||++
T Consensus 266 ~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~----------------------------------~-~~v~~lhg~~ 308 (1054)
T 1gku_B 266 TLSSILEKL--GTGGIIYARTGEEAEEIYESLKN----------------------------------K-FRIGIVTATK 308 (1054)
T ss_dssp TTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTT----------------------------------S-SCEEECTTSS
T ss_pred HHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhh----------------------------------c-cCeeEEeccH
Confidence 122233222 57899999999999988866621 1 5689999998
Q ss_pred CHHHHHHHHHHHhcCCceEEEe----ccccccccCCCCc-EEEEe
Q 043190 986 NDKDRSLVEELFANNKIQVLVC----TSTLAWGVNLPAH-LVIIK 1025 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLva----T~~l~~Gvdip~~-~~VI~ 1025 (1492)
..+++.|++|+++|||| |+++++|+|+|++ ++||+
T Consensus 309 -----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~ 348 (1054)
T 1gku_B 309 -----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF 348 (1054)
T ss_dssp -----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEE
T ss_pred -----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEE
Confidence 37889999999999999 9999999999995 99997
No 41
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.98 E-value=6.2e-32 Score=353.55 Aligned_cols=339 Identities=17% Similarity=0.203 Sum_probs=212.8
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC----CceEEEEcccHHHHHHH-HHHHHHHhhhcc
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS----DMKVVYIAPLKAIVRER-MNDWKDRLVSQL 762 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~----~~~~l~i~P~r~La~q~-~~~~~~~~~~~~ 762 (1492)
.|+|+|.++++.++ .++++++++|||+|||++|.+|++..+...+ ++++||++|+++|+.|+ ++++.+.+..
T Consensus 7 ~l~~~Q~~~i~~il-~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~-- 83 (699)
T 4gl2_A 7 QLRPYQMEVAQPAL-EGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK-- 83 (699)
T ss_dssp CCCHHHHHHHHHHH-SSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT--
T ss_pred CccHHHHHHHHHHH-hCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc--
Confidence 49999999999998 5889999999999999999999998766532 38999999999999999 8988886543
Q ss_pred CCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcc----cCccccCcccEEEEecccccCC--CCccHHHHHHH
Q 043190 763 GKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNW----HSRNYVKKVGLMILDEIHLLGA--ERGPILEVIVS 833 (1492)
Q Consensus 763 g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~----~~~~~l~~i~liViDEaH~l~~--~~g~~~~~i~~ 833 (1492)
+.++..++|+..... .....++|+|+||++|...+... .....+.++++|||||||++.. .....+..++.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 478999999876442 22357899999999997766321 1233578899999999998742 12222222211
Q ss_pred -HHHHhh-----hccCCceEEEEEcCCCCCh------------HHHHHHhcCCcceeEecC-----C-CccccCcEEEEe
Q 043190 834 -RMRYIS-----SQTERAVRFIGLSTALANA------------GDLADWLGVGEIGLFNFK-----P-SVRPVPLEVHIQ 889 (1492)
Q Consensus 834 -~l~~~~-----~~~~~~~~ii~lSATl~~~------------~~~~~~l~~~~~~~~~~~-----~-~~r~~~l~~~~~ 889 (1492)
+++... ....+.+++++||||+.+. .++..+++.......... . ..+|........
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 111110 0011467999999999862 223344443111000000 0 000000000000
Q ss_pred cc-----------------------CCcccc-----cc------------------------------------------
Q 043190 890 GY-----------------------PGKFYC-----PR------------------------------------------ 899 (1492)
Q Consensus 890 ~~-----------------------~~~~~~-----~~------------------------------------------ 899 (1492)
.. +...+. ..
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000000 00
Q ss_pred -------------------------------------------------------ccccChhHHHHHhh---cCC-CCCe
Q 043190 900 -------------------------------------------------------MNSMNKPAYAAICT---HSP-TKPV 920 (1492)
Q Consensus 900 -------------------------------------------------------~~~~~~~~~~~l~~---~~~-~~~~ 920 (1492)
.......+...+.. ..+ ++++
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 00000011111111 123 7899
Q ss_pred eEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCC--------CCHHHHHH
Q 043190 921 LIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAG--------LNDKDRSL 992 (1492)
Q Consensus 921 LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~--------l~~~~R~~ 992 (1492)
||||++++.++.++..|.+... + ...+..+..+||+ |++.+|..
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~-------l---------------------~~~g~~~~~lhg~~~~~~~~~~~~~eR~~ 455 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEK-------F---------------------AEVGVKAHHLIGAGHSSEFKPMTQNEQKE 455 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCS-------C---------------------C-----CEECCCSCCCTTCCCCCHHHHHH
T ss_pred EEEECcHHHHHHHHHHHHhCcc-------c---------------------cccCcceEEEECCCCccCCCCCCHHHHHH
Confidence 9999999999999988743200 0 0124678899999 99999999
Q ss_pred HHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 993 VEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 993 v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+++.|++|+++|||||+++++|||+|++++||+ ||.+ .+..+|+||+|||||.| +.+++++....
T Consensus 456 ~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~----~d~p------~s~~~~~Qr~GRArr~g----~~~~l~~~~~~ 520 (699)
T 4gl2_A 456 VISKFRTGKINLLIATTVAEEGLDIKECNIVIR----YGLV------TNEIAMVQARGRARADE----STYVLVAHSGS 520 (699)
T ss_dssp HHHHHCC---CCSEEECSCCTTSCCCSCCCCEE----ESCC------CCHHHHHHHHTTSCSSS----CEEEEEEESSS
T ss_pred HHHHHhcCCCcEEEEccccccCCccccCCEEEE----eCCC------CCHHHHHHHcCCCCCCC----ceEEEEEeCCc
Confidence 999999999999999999999999999999997 6643 36899999999988743 45555554443
No 42
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=1.2e-30 Score=349.78 Aligned_cols=315 Identities=19% Similarity=0.284 Sum_probs=229.6
Q ss_pred hHhhhcCCCCCCHHHHHHHHhhhc---CCC--cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHH
Q 043190 679 IYEALYNFSHFNPIQTQIFHILYH---TDN--NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 679 ~~~~~~~~~~l~~~Q~~~i~~~~~---~~~--~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~ 753 (1492)
.+...|+|+ ++|+|.++++.++. +++ +++++||||+|||++|+.+++..+.. +.+++|++||++||.|.+++
T Consensus 595 ~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--g~~vlvlvPt~~La~Q~~~~ 671 (1151)
T 2eyq_A 595 LFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--HKQVAVLVPTTLLAQQHYDN 671 (1151)
T ss_dssp HHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHH
T ss_pred HHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--CCeEEEEechHHHHHHHHHH
Confidence 344556887 79999999999874 244 99999999999999999999887664 67999999999999999999
Q ss_pred HHHHhhhccCCEEEEEcCCCCcchh-------ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCcc
Q 043190 754 WKDRLVSQLGKEMVEMTGDYTPDLM-------ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGP 826 (1492)
Q Consensus 754 ~~~~~~~~~g~~v~~~~g~~~~~~~-------~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~ 826 (1492)
+.+.+... ++++..++|....... ....++|+|+||+.+. + ...+++++++||||+|+++ .
T Consensus 672 ~~~~~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~----~---~~~~~~l~lvIiDEaH~~g----~ 739 (1151)
T 2eyq_A 672 FRDRFANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ----S---DVKFKDLGLLIVDEEHRFG----V 739 (1151)
T ss_dssp HHHHSTTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH----S---CCCCSSEEEEEEESGGGSC----H
T ss_pred HHHHhhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh----C---CccccccceEEEechHhcC----h
Confidence 99888765 7889999887654321 1235899999997552 2 2347899999999999863 3
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChh
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKP 906 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 906 (1492)
.....+..+ ..+.++++||||+.....-..+.+.....++... .....++...+..... ..
T Consensus 740 ~~~~~l~~l-------~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~-~~~r~~i~~~~~~~~~-----------~~ 800 (1151)
T 2eyq_A 740 RHKERIKAM-------RANVDILTLTATPIPRTLNMAMSGMRDLSIIATP-PARRLAVKTFVREYDS-----------MV 800 (1151)
T ss_dssp HHHHHHHHH-------HTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCC-CCBCBCEEEEEEECCH-----------HH
T ss_pred HHHHHHHHh-------cCCCCEEEEcCCCChhhHHHHHhcCCCceEEecC-CCCccccEEEEecCCH-----------HH
Confidence 333333332 2468999999998543222222333322222211 1222233322221110 11
Q ss_pred HH-HHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCC
Q 043190 907 AY-AAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGL 985 (1492)
Q Consensus 907 ~~-~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l 985 (1492)
.. ..+.....+++++|||++++.++.++..|.+.. .+.++..+||+|
T Consensus 801 i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~--------------------------------p~~~v~~lhg~~ 848 (1151)
T 2eyq_A 801 VREAILREILRGGQVYYLYNDVENIQKAAERLAELV--------------------------------PEARIAIGHGQM 848 (1151)
T ss_dssp HHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHC--------------------------------TTSCEEECCSSC
T ss_pred HHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhC--------------------------------CCCeEEEEeCCC
Confidence 11 222334567899999999999999998875432 146799999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEE
Q 043190 986 NDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVI 1065 (1492)
Q Consensus 986 ~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~ 1065 (1492)
+..+|..+++.|++|+++|||||+++++|+|+|++++||. +++ ..++..+|.||+||+||.| ..|.|++
T Consensus 849 ~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi----~~~-----~~~~l~~l~Qr~GRvgR~g--~~g~~~l 917 (1151)
T 2eyq_A 849 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII----ERA-----DHFGLAQLHQLRGRVGRSH--HQAYAWL 917 (1151)
T ss_dssp CHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE----TTT-----TSSCHHHHHHHHTTCCBTT--BCEEEEE
T ss_pred CHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE----eCC-----CCCCHHHHHHHHhccCcCC--CceEEEE
Confidence 9999999999999999999999999999999999998885 221 1347889999999999987 7899999
Q ss_pred EecCC
Q 043190 1066 LVHEP 1070 (1492)
Q Consensus 1066 l~~~~ 1070 (1492)
++.+.
T Consensus 918 l~~~~ 922 (1151)
T 2eyq_A 918 LTPHP 922 (1151)
T ss_dssp EECCG
T ss_pred EECCc
Confidence 98764
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=4.3e-31 Score=351.46 Aligned_cols=284 Identities=14% Similarity=0.132 Sum_probs=198.9
Q ss_pred HhhhcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 680 YEALYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 680 ~~~~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
+...+|| .|+|+|.++++.++ .++|++++||||||||++++.+++..+. .+.+++|++||++||.|+++++.+ +.
T Consensus 71 ~~~~~gf-~pt~iQ~~ai~~il-~g~dvlv~ApTGSGKTl~~l~~il~~~~--~~~~~Lil~PtreLa~Q~~~~l~~-l~ 145 (1104)
T 4ddu_A 71 FKKKFGK-DLTGYQRLWAKRIV-QGKSFTMVAPTGVGKTTFGMMTALWLAR--KGKKSALVFPTVTLVKQTLERLQK-LA 145 (1104)
T ss_dssp HHHHSSS-CCCHHHHHHHHHHT-TTCCEEECCSTTCCHHHHHHHHHHHHHT--TTCCEEEEESSHHHHHHHHHHHHT-TS
T ss_pred HHHhcCC-CCCHHHHHHHHHHH-cCCCEEEEeCCCCcHHHHHHHHHHHHHh--cCCeEEEEechHHHHHHHHHHHHH-hh
Confidence 3344588 49999999999998 6889999999999999999888888774 478999999999999999999988 65
Q ss_pred hccCCEEEEEcCCCCcchh-----c--cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC---------
Q 043190 760 SQLGKEMVEMTGDYTPDLM-----A--LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE--------- 823 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~~~-----~--~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~--------- 823 (1492)
..++++..++|+.....+ . ...++|+|+||+++..++.. ..++++++|||||||++...
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~----l~~~~l~~lViDEaH~l~~~~r~~Dr~L~ 220 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK----LSQKRFDFVFVDDVDAVLKASRNIDTLLM 220 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH----HHTSCCSEEEESCHHHHTTSSHHHHHHHH
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh----hcccCcCEEEEeCCCccccccccchhhhH
Confidence 448899999998765221 1 12489999999998766653 33678999999999976531
Q ss_pred ---CccH-HHHHHHHHHH--hhhccC--CceEEEEEcCCC-CCh---HHHHHHhcCCcceeEecCCCccccCcEEEEecc
Q 043190 824 ---RGPI-LEVIVSRMRY--ISSQTE--RAVRFIGLSTAL-ANA---GDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGY 891 (1492)
Q Consensus 824 ---~g~~-~~~i~~~l~~--~~~~~~--~~~~ii~lSATl-~~~---~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~ 891 (1492)
+... +..++..++. .....+ ...|++++|||+ +.. ..+..+++..... ....+..+...+...
T Consensus 221 ~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~-----~~~~~~~i~~~~~~~ 295 (1104)
T 4ddu_A 221 MVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR-----LVSVARNITHVRISS 295 (1104)
T ss_dssp TSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCB-----CCCCCCCEEEEEESC
T ss_pred hcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEecc-----CCCCcCCceeEEEec
Confidence 1112 3333333320 000111 578999999994 431 2233444322110 011111122222111
Q ss_pred CCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHH
Q 043190 892 PGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLR 971 (1492)
Q Consensus 892 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 971 (1492)
.....+...+.. .++++||||++++.++.++..|..
T Consensus 296 ----------~k~~~L~~ll~~--~~~~~LVF~~s~~~a~~l~~~L~~-------------------------------- 331 (1104)
T 4ddu_A 296 ----------RSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKR-------------------------------- 331 (1104)
T ss_dssp ----------CCHHHHHHHHHH--HCSSEEEEESSSHHHHHHHHHHHH--------------------------------
T ss_pred ----------CHHHHHHHHHHh--cCCCEEEEECcHHHHHHHHHHHHh--------------------------------
Confidence 011122333333 348999999999999999987743
Q ss_pred HHhccceE-eecCCCCHHHHHHHHHHHhcCCceEEEe----ccccccccCCCC-cEEEEecceeeeCcc
Q 043190 972 QTLQFGIG-LHHAGLNDKDRSLVEELFANNKIQVLVC----TSTLAWGVNLPA-HLVIIKGTEYYDGKT 1034 (1492)
Q Consensus 972 ~~~~~~v~-~~h~~l~~~~R~~v~~~f~~g~~~vLva----T~~l~~Gvdip~-~~~VI~~~~~~~~~~ 1034 (1492)
.+..+. .+|| +|+. ++.|++|+++|||| |+++++|+|+|+ +++||+ ||.+.
T Consensus 332 --~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~----~d~P~ 388 (1104)
T 4ddu_A 332 --FKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF----WGTPS 388 (1104)
T ss_dssp --TTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEE----ESCCE
T ss_pred --CCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEE----ECCCC
Confidence 256777 8898 3555 99999999999999 999999999999 999998 66554
No 44
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=2.4e-31 Score=352.54 Aligned_cols=347 Identities=19% Similarity=0.262 Sum_probs=196.7
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC---CceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS---DMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
+|+..|+|+|.++++.++ .++++++++|||||||++|.+|++..+...+ ++++||++|+++|+.|+++++.+.+..
T Consensus 244 ~~~~~~r~~Q~~ai~~il-~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAI-NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp ----CCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHH-cCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 367789999999999998 6899999999999999999999999887654 789999999999999999999986655
Q ss_pred ccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHH
Q 043190 761 QLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRY 837 (1492)
Q Consensus 761 ~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~ 837 (1492)
. ++++..++|+..... ....+++|+|+||+++...+.... ...+.++++|||||||++.... .+..++.++..
T Consensus 323 ~-~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~-~~~l~~~~liViDEaH~~~~~~--~~~~i~~~~~~ 398 (936)
T 4a2w_A 323 Q-GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGT-LTSLSIFTLMIFDECHNTTGNH--PYNVLMTRYLE 398 (936)
T ss_dssp T-TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSS-CCCGGGCSEEEEETGGGCSTTC--HHHHHHHHHHH
T ss_pred c-CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCc-cccccCCCEEEEECccccCCCc--cHHHHHHHHHH
Confidence 4 889999999875432 222468999999999987776522 1247889999999999986532 25555544432
Q ss_pred h-hhccCCceEEEEEcCCCCC--h----------HHHHHHhcCCcceeEecCCC--------ccccCcEEEEec------
Q 043190 838 I-SSQTERAVRFIGLSTALAN--A----------GDLADWLGVGEIGLFNFKPS--------VRPVPLEVHIQG------ 890 (1492)
Q Consensus 838 ~-~~~~~~~~~ii~lSATl~~--~----------~~~~~~l~~~~~~~~~~~~~--------~r~~~l~~~~~~------ 890 (1492)
. ........++++||||++. . ..+...++..... ..... .++.........
T Consensus 399 ~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~--~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~ 476 (936)
T 4a2w_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAIS--TVRENIQELQRFMNKPEIDVRLVKRRIHNPF 476 (936)
T ss_dssp HHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEE--CCCSSHHHHHHHSCCCCEEEEECCCCSCCHH
T ss_pred HhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceee--cccccHHHHHHhccCCcceEEecccccCcHH
Confidence 2 2222456899999999953 1 1222333321100 00000 000000000000
Q ss_pred --------------------------cCCccccc-----ccc--------------------------------------
Q 043190 891 --------------------------YPGKFYCP-----RMN-------------------------------------- 901 (1492)
Q Consensus 891 --------------------------~~~~~~~~-----~~~-------------------------------------- 901 (1492)
.+...+.. ...
T Consensus 477 ~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al 556 (936)
T 4a2w_A 477 AAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDAL 556 (936)
T ss_dssp HHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000
Q ss_pred -----------------------------------------------------ccCh---hHHHHHhh---cCCCCCeeE
Q 043190 902 -----------------------------------------------------SMNK---PAYAAICT---HSPTKPVLI 922 (1492)
Q Consensus 902 -----------------------------------------------------~~~~---~~~~~l~~---~~~~~~~LI 922 (1492)
.... .+...+.. ..+++++||
T Consensus 557 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLI 636 (936)
T 4a2w_A 557 IISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLL 636 (936)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEE
T ss_pred hhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEE
Confidence 0000 01111222 145789999
Q ss_pred EecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc-CC
Q 043190 923 FVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN-NK 1001 (1492)
Q Consensus 923 F~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~-g~ 1001 (1492)
||++++.++.++..|.+.......... ...+.+...+||+|+..+|..+++.|++ |+
T Consensus 637 F~~t~~~ae~L~~~L~~~~~l~~ik~~----------------------~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~ 694 (936)
T 4a2w_A 637 FAKTRALVSALKKCMEENPILNYIKPG----------------------VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD 694 (936)
T ss_dssp EESSHHHHHHHHHHHHHCSTTSSCCCE----------------------EC----------------------------C
T ss_pred EeCCHHHHHHHHHHHhhCcccccccee----------------------EEecCCCcccCCCCCHHHHHHHHHHhhccCC
Confidence 999999999999888652100000000 1124556678999999999999999999 99
Q ss_pred ceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 1002 IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 1002 ~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
++|||||+++++|||+|++++||+ ||.+ .+..+|+||+|| ||. ..|.+++++...+.+
T Consensus 695 ~~VLVaT~~~~eGIDlp~v~~VI~----yD~p------~s~~~~iQr~GR-GR~---~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 695 NRLLIATSVADEGIDIVQCNLVVL----YEYS------GNVTKMIQVRGR-GRA---AGSKCILVTSKTEVV 752 (936)
T ss_dssp CSEEEEECC------CCCCSEEEE----ESCC------SCSHHHHCC-----------CCCEEEEESCHHHH
T ss_pred eeEEEEeCchhcCCcchhCCEEEE----eCCC------CCHHHHHHhcCC-CCC---CCCEEEEEEeCCCHH
Confidence 999999999999999999999998 6643 368899999999 996 589999998776543
No 45
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.97 E-value=3.2e-31 Score=324.33 Aligned_cols=300 Identities=13% Similarity=0.080 Sum_probs=202.4
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+.+++|+|. +++.++.++++++++||||||||++|++|++..+.. .+.+++|++||++||.|+++.+. |.
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~-------g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-RRLRTLILAPTRVVAAEMEEALR-------GL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-cCCcEEEECCCHHHHHHHHHHhc-------Cc
Confidence 6778999985 799998666666999999999999999999876554 36899999999999999988753 44
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTER 844 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~ 844 (1492)
.+....+.... ....+..|.++|++.+...+.+ ...++++++|||||||+++.........+..+. ...
T Consensus 72 ~v~~~~~~~~~--~~~~~~~i~~~t~~~l~~~l~~---~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~~------~~~ 140 (451)
T 2jlq_A 72 PIRYQTPAVKS--DHTGREIVDLMCHATFTTRLLS---STRVPNYNLIVMDEAHFTDPCSVAARGYISTRV------EMG 140 (451)
T ss_dssp CEEECCTTCSC--CCCSSCCEEEEEHHHHHHHHHH---CSCCCCCSEEEEETTTCCSHHHHHHHHHHHHHH------HTT
T ss_pred eeeeeeccccc--cCCCCceEEEEChHHHHHHhhC---cccccCCCEEEEeCCccCCcchHHHHHHHHHhh------cCC
Confidence 44433332211 2234568999999987655543 245789999999999977322222222222111 235
Q ss_pred ceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEe
Q 043190 845 AVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFV 924 (1492)
Q Consensus 845 ~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~ 924 (1492)
+.++++||||++. ....++... .+........+...+.. ....+.. ..+++||||
T Consensus 141 ~~~~i~~SAT~~~--~~~~~~~~~-------------~~~~~~~~~~p~~~~~~--------~~~~l~~--~~~~~lVF~ 195 (451)
T 2jlq_A 141 EAAAIFMTATPPG--STDPFPQSN-------------SPIEDIEREIPERSWNT--------GFDWITD--YQGKTVWFV 195 (451)
T ss_dssp SCEEEEECSSCTT--CCCSSCCCS-------------SCEEEEECCCCSSCCSS--------SCHHHHH--CCSCEEEEC
T ss_pred CceEEEEccCCCc--cchhhhcCC-------------CceEecCccCCchhhHH--------HHHHHHh--CCCCEEEEc
Confidence 7899999999965 111111100 01011111111111110 1122222 256999999
Q ss_pred cChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceE
Q 043190 925 SSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQV 1004 (1492)
Q Consensus 925 ~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~v 1004 (1492)
+|++.|+.++..|.+ .+..+..+|+++ +..+++.|++|+++|
T Consensus 196 ~s~~~a~~l~~~L~~----------------------------------~g~~~~~lh~~~----~~~~~~~f~~g~~~v 237 (451)
T 2jlq_A 196 PSIKAGNDIANCLRK----------------------------------SGKRVIQLSRKT----FDTEYPKTKLTDWDF 237 (451)
T ss_dssp SSHHHHHHHHHHHHT----------------------------------TTCCEEEECTTT----HHHHGGGGGSSCCSE
T ss_pred CCHHHHHHHHHHHHH----------------------------------cCCeEEECCHHH----HHHHHHhhccCCceE
Confidence 999999999887732 145678889865 467999999999999
Q ss_pred EEeccccccccCCCCcEEEEecce----eee--CccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 1005 LVCTSTLAWGVNLPAHLVIIKGTE----YYD--GKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 1005 LvaT~~l~~Gvdip~~~~VI~~~~----~~~--~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
||||+++++|+|+|+ ++||+... .|+ +.... ..+.+..+|+||+|||||.|. ..|.|++++..
T Consensus 238 LVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~-~~g~~~~~~~~ 310 (451)
T 2jlq_A 238 VVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA-QEDDQYVFSGD 310 (451)
T ss_dssp EEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCEEEEECSC
T ss_pred EEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCC-CCccEEEEeCC
Confidence 999999999999999 88886331 121 11110 045679999999999999882 27888888754
No 46
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=1.3e-30 Score=327.38 Aligned_cols=326 Identities=21% Similarity=0.300 Sum_probs=225.3
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV 767 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~ 767 (1492)
.|+|+|.+++..++. + ++++++|||+|||++++++++..+. .++.++||++|+++|+.|.++++.+.++.. +.++.
T Consensus 9 ~l~~~Q~~~i~~~~~-~-~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~~-~~~v~ 84 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE-T-NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNLP-PEKIV 84 (494)
T ss_dssp CCCHHHHHHHHHGGG-S-CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCSC-GGGEE
T ss_pred CccHHHHHHHHHHhh-C-CEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCcc-hhheE
Confidence 499999999999984 4 9999999999999999999988776 347899999999999999999988765321 34888
Q ss_pred EEcCCCCcchh--ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCc
Q 043190 768 EMTGDYTPDLM--ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERA 845 (1492)
Q Consensus 768 ~~~g~~~~~~~--~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~ 845 (1492)
.++|+...... ...+++|+|+||+.+...+... ...+.++++||+||||.+.+. ..+..+...+.. ....
T Consensus 85 ~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~--~~~~~~~~~vIiDEaH~~~~~--~~~~~~~~~~~~----~~~~ 156 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLAG--RISLEDVSLIVFDEAHRAVGN--YAYVFIAREYKR----QAKN 156 (494)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTT--SCCTTSCSEEEEETGGGCSTT--CHHHHHHHHHHH----HCSS
T ss_pred EeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcC--CcchhhceEEEEECCcccCCC--CcHHHHHHHHHh----cCCC
Confidence 99998765432 1236899999999987766642 234778999999999988543 234444444432 2357
Q ss_pred eEEEEEcCCCCC-h---HHHHHHhcCCcceeEec-CCCcc----ccCcEEEEeccCCcc---------------------
Q 043190 846 VRFIGLSTALAN-A---GDLADWLGVGEIGLFNF-KPSVR----PVPLEVHIQGYPGKF--------------------- 895 (1492)
Q Consensus 846 ~~ii~lSATl~~-~---~~~~~~l~~~~~~~~~~-~~~~r----~~~l~~~~~~~~~~~--------------------- 895 (1492)
.++++||||+.+ . .++..+++......... ..... +..........+...
T Consensus 157 ~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (494)
T 1wp9_A 157 PLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAET 236 (494)
T ss_dssp CCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 889999999974 2 33445554432211110 00000 000000000000000
Q ss_pred ---------------------------------ccc---------------------------ccc--------------
Q 043190 896 ---------------------------------YCP---------------------------RMN-------------- 901 (1492)
Q Consensus 896 ---------------------------------~~~---------------------------~~~-------------- 901 (1492)
+.. ...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (494)
T 1wp9_A 237 GLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKAS 316 (494)
T ss_dssp TSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred ccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhh
Confidence 000 000
Q ss_pred -----------------------ccC---hhHHHHHhhc---CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCC
Q 043190 902 -----------------------SMN---KPAYAAICTH---SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLG 952 (1492)
Q Consensus 902 -----------------------~~~---~~~~~~l~~~---~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~ 952 (1492)
... ..+...+... .+++++||||+++..+..++..|.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~------------- 383 (494)
T 1wp9_A 317 KEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK------------- 383 (494)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH-------------
T ss_pred hhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHH-------------
Confidence 000 0011112221 5688999999999999998877743
Q ss_pred CChHHHHHHHhhcCcHHHHHHhccceEeecC--------CCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEE
Q 043190 953 MPEEDLQMVLSQVTDQNLRQTLQFGIGLHHA--------GLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVII 1024 (1492)
Q Consensus 953 ~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~--------~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI 1024 (1492)
.+..+..+|| +++..+|..+++.|++|+.+|||||+++++|+|+|++++||
T Consensus 384 ---------------------~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi 442 (494)
T 1wp9_A 384 ---------------------DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVV 442 (494)
T ss_dssp ---------------------TTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEE
T ss_pred ---------------------cCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEE
Confidence 2567888999 99999999999999999999999999999999999999999
Q ss_pred ecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcH
Q 043190 1025 KGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKK 1072 (1492)
Q Consensus 1025 ~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~ 1072 (1492)
. |+++ .++..|.||+|||||.| . |.++.++.++..
T Consensus 443 ~----~d~~------~~~~~~~Qr~GR~~R~g--~-g~~~~l~~~~t~ 477 (494)
T 1wp9_A 443 F----YEPV------PSAIRSIQRRGRTGRHM--P-GRVIILMAKGTR 477 (494)
T ss_dssp E----SSCC------HHHHHHHHHHTTSCSCC--C-SEEEEEEETTSH
T ss_pred E----eCCC------CCHHHHHHHHhhccCCC--C-ceEEEEEecCCH
Confidence 7 4322 24779999999999988 3 999999987753
No 47
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.97 E-value=5.9e-31 Score=326.18 Aligned_cols=332 Identities=14% Similarity=0.104 Sum_probs=215.8
Q ss_pred cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 684 YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 684 ~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
.|| .|+|+|.++++.++ .|+ |..++||+|||++|.+|++..... +..+++++||++||.|.++.+.. +...+|
T Consensus 80 lG~-~pt~VQ~~~ip~ll-~G~--Iaea~TGeGKTlaf~LP~~l~aL~--g~~vlVltptreLA~qd~e~~~~-l~~~lg 152 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVALH-DGN--IAEMKTGEGKTLTSTLPVYLNALT--GKGVHVVTVNEYLASRDAEQMGK-IFEFLG 152 (844)
T ss_dssp HSC-CCCHHHHHHHHHHH-TTS--EEECCTTSCHHHHHHHHHHHHHTT--SSCEEEEESSHHHHHHHHHHHHH-HHHHTT
T ss_pred cCC-CCcHHHHHhhHHHh-CCC--EEEccCCcHHHHHHHHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHH-HHhhcC
Confidence 499 89999999999998 566 999999999999999999854332 67899999999999999888776 555569
Q ss_pred CEEEEEcCCCCcchhcc-CCCcEEEECchhh-hHhhhccc----CccccCcccEEEEecccccC-C-CCccHH-------
Q 043190 764 KEMVEMTGDYTPDLMAL-LSADIIISTPEKW-DGISRNWH----SRNYVKKVGLMILDEIHLLG-A-ERGPIL------- 828 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~~~-~~~~Iiv~Tpe~l-~~l~~~~~----~~~~l~~i~liViDEaH~l~-~-~~g~~~------- 828 (1492)
++++++.|+.+.+.+.. .+++|+|+||++| .++++... ....++.+.++|+||||.+. + .+.+.+
T Consensus 153 l~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~ 232 (844)
T 1tf5_A 153 LTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAK 232 (844)
T ss_dssp CCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEEC
T ss_pred CeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCccc
Confidence 99999999877553332 3689999999998 34443321 23457899999999999753 3 232200
Q ss_pred -HHHHHHHHHhhhccC---------CceEEE-----------------EEcCCCCC-hHHH-----HHHh-cCCcceeE-
Q 043190 829 -EVIVSRMRYISSQTE---------RAVRFI-----------------GLSTALAN-AGDL-----ADWL-GVGEIGLF- 873 (1492)
Q Consensus 829 -~~i~~~l~~~~~~~~---------~~~~ii-----------------~lSATl~~-~~~~-----~~~l-~~~~~~~~- 873 (1492)
..+...+..+...++ ...++. ++|||.+. ...+ +..+ ..+...++
T Consensus 233 ~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~ 312 (844)
T 1tf5_A 233 STKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVE 312 (844)
T ss_dssp CCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEE
T ss_pred chhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEe
Confidence 011112222222222 234444 66777542 1111 1111 10000000
Q ss_pred ----------------------------------ecCCC------------ccccC---------------------cEE
Q 043190 874 ----------------------------------NFKPS------------VRPVP---------------------LEV 886 (1492)
Q Consensus 874 ----------------------------------~~~~~------------~r~~~---------------------l~~ 886 (1492)
...+. ++.++ +.+
T Consensus 313 dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~v 392 (844)
T 1tf5_A 313 DGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQV 392 (844)
T ss_dssp TTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCE
T ss_pred cCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCce
Confidence 00000 00000 000
Q ss_pred EEeccC---------CccccccccccChhHHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChH
Q 043190 887 HIQGYP---------GKFYCPRMNSMNKPAYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEE 956 (1492)
Q Consensus 887 ~~~~~~---------~~~~~~~~~~~~~~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 956 (1492)
...... ...+... ......+...+.. +..+.++||||+|+..++.++..|..
T Consensus 393 v~IPtn~p~~r~d~~d~v~~~~-~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~----------------- 454 (844)
T 1tf5_A 393 VTIPTNRPVVRDDRPDLIYRTM-EGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKN----------------- 454 (844)
T ss_dssp EECCCSSCCCCEECCCEEESSH-HHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHT-----------------
T ss_pred EEecCCCCcccccCCcEEEeCH-HHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH-----------------
Confidence 000000 0001100 0000112222322 24567899999999999999987743
Q ss_pred HHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCC--------CcEEEEecce
Q 043190 957 DLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP--------AHLVIIKGTE 1028 (1492)
Q Consensus 957 ~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip--------~~~~VI~~~~ 1028 (1492)
.++.+..+||++++.+|..+.++|+.| .|+|||++++||+|++ ++.+||+
T Consensus 455 -----------------~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn--- 512 (844)
T 1tf5_A 455 -----------------KGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG--- 512 (844)
T ss_dssp -----------------TTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE---
T ss_pred -----------------CCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEE---
Confidence 256788999999999988787777766 6999999999999999 8899998
Q ss_pred eeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1029 YYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1029 ~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
|+ .+-+...|.||+||+||.| ++|.++.|++..+
T Consensus 513 -~d------~p~s~r~y~hr~GRTGRqG--~~G~s~~~vs~eD 546 (844)
T 1tf5_A 513 -TE------RHESRRIDNQLRGRSGRQG--DPGITQFYLSMED 546 (844)
T ss_dssp -SS------CCSSHHHHHHHHTTSSGGG--CCEEEEEEEETTS
T ss_pred -ec------CCCCHHHHHhhcCccccCC--CCCeEEEEecHHH
Confidence 33 2335889999999999988 9999999987654
No 48
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.97 E-value=5.6e-30 Score=321.69 Aligned_cols=299 Identities=20% Similarity=0.204 Sum_probs=207.4
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchh-ccC
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLM-ALL 781 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~-~~~ 781 (1492)
.+++++++||||||||+.++..+.. .+..+|++|+|+||.|+++++.+. |.++..++|+...-.. ...
T Consensus 154 ~rk~vlv~apTGSGKT~~al~~l~~------~~~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~iv~TpGr 222 (677)
T 3rc3_A 154 QRKIIFHSGPTNSGKTYHAIQKYFS------AKSGVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVTVQPNGK 222 (677)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH------SSSEEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEECCSTTCC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHh------cCCeEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEEecCCCc
Confidence 6789999999999999954444433 244599999999999999998662 7889999997654211 112
Q ss_pred CCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHH
Q 043190 782 SADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGD 860 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~ 860 (1492)
..+++++|++.+. ....++++||||+|++.+ ++|..++.++.+++ ....+++++|||.+....
T Consensus 223 ~~~il~~T~e~~~----------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~------~~~i~il~~SAT~~~i~~ 286 (677)
T 3rc3_A 223 QASHVSCTVEMCS----------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC------AEEVHLCGEPAAIDLVME 286 (677)
T ss_dssp CCSEEEEEGGGCC----------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC------EEEEEEEECGGGHHHHHH
T ss_pred ccceeEecHhHhh----------hcccCCEEEEecceecCCccchHHHHHHHHccC------ccceEEEeccchHHHHHH
Confidence 3678888887543 246789999999998864 68888877766542 257899999999766666
Q ss_pred HHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHH
Q 043190 861 LADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQF 940 (1492)
Q Consensus 861 ~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~ 940 (1492)
+..+.+.... +. ...+..++..... ....+... .+..+|||+++++++.++..|.+
T Consensus 287 l~~~~~~~~~-v~---~~~r~~~l~~~~~-----------------~l~~l~~~--~~g~iIf~~s~~~ie~la~~L~~- 342 (677)
T 3rc3_A 287 LMYTTGEEVE-VR---DYKRLTPISVLDH-----------------ALESLDNL--RPGDCIVCFSKNDIYSVSRQIEI- 342 (677)
T ss_dssp HHHHHTCCEE-EE---ECCCSSCEEECSS-----------------CCCSGGGC--CTTEEEECSSHHHHHHHHHHHHH-
T ss_pred HHHhcCCceE-EE---EeeecchHHHHHH-----------------HHHHHHhc--CCCCEEEEcCHHHHHHHHHHHHh-
Confidence 6666543221 11 1122222221100 00011111 24458999999999999887743
Q ss_pred HhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhc--CCceEEEeccccccccCCC
Q 043190 941 AASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFAN--NKIQVLVCTSTLAWGVNLP 1018 (1492)
Q Consensus 941 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~--g~~~vLvaT~~l~~Gvdip 1018 (1492)
.+.++.++||+|++++|..+++.|++ |.++|||||+++++|||+
T Consensus 343 ---------------------------------~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi- 388 (677)
T 3rc3_A 343 ---------------------------------RGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL- 388 (677)
T ss_dssp ---------------------------------TTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-
T ss_pred ---------------------------------cCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-
Confidence 25789999999999999999999999 899999999999999999
Q ss_pred CcEEEEe-ccee--eeCccC-ccccCCHHHHHHhhcccCCCCCC-CceEEEEEecCCcHHHHHHhh-cCCCceee
Q 043190 1019 AHLVIIK-GTEY--YDGKTK-RYVDFPITDILQMMGRAGRPQYD-QHGKAVILVHEPKKSFYKKFL-YEPFPVES 1087 (1492)
Q Consensus 1019 ~~~~VI~-~~~~--~~~~~~-~~~~~~~~~~~Qr~GRagR~g~~-~~G~~i~l~~~~~~~~~~~~l-~~~~pies 1087 (1492)
++++||+ +... |++..+ .+.+++.++|+||+|||||.|.+ ..|.|+.++.++ ...+.+++ ....++++
T Consensus 389 ~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d-~~~~~~~~~~~~~~i~~ 462 (677)
T 3rc3_A 389 SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHED-LSLLKEILKRPVDPIRA 462 (677)
T ss_dssp CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH-HHHHHHHHHSCCCCCCC
T ss_pred CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecch-HHHHHHHHhcCcchhhh
Confidence 5665554 4433 232211 23578899999999999999855 458888776554 34555555 44455665
No 49
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.97 E-value=4e-30 Score=323.00 Aligned_cols=298 Identities=12% Similarity=0.040 Sum_probs=204.3
Q ss_pred CCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
...++|+|+++++.+. ++++++++||||||||++|++|+++.+.. .+.+++|++|||+||.|+++.+. +..
T Consensus 169 ~~~~lpiq~~~i~~l~-~g~dvlv~a~TGSGKT~~~~lpil~~l~~-~~~~vLvl~PtreLa~Qi~~~l~-------~~~ 239 (618)
T 2whx_A 169 ERIGEPDYEVDEDIFR-KKRLTIMDLHPGAGKTKRILPSIVREALK-RRLRTLILAPTRVVAAEMEEALR-------GLP 239 (618)
T ss_dssp CCCCCCCCCCCGGGGS-TTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSC
T ss_pred cccCCCccccCHHHHh-cCCeEEEEcCCCCCHHHHHHHHHHHHHHh-CCCeEEEEcChHHHHHHHHHHhc-------CCc
Confidence 4678899888877766 88999999999999999999999987765 46799999999999999987654 334
Q ss_pred EEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCc
Q 043190 766 MVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERA 845 (1492)
Q Consensus 766 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~ 845 (1492)
+. +.+... ......+..+.++|.+.+...+.. ...++++++||+||||+++..+...+..+..++. ..+
T Consensus 240 v~-~~~~~l-~~~~tp~~~i~~~t~~~l~~~l~~---~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~------~~~ 308 (618)
T 2whx_A 240 IR-YQTPAV-KSDHTGREIVDLMCHATFTTRLLS---STRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE------MGE 308 (618)
T ss_dssp EE-ECCTTS-SCCCCSSSCEEEEEHHHHHHHHHH---CSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH------HTS
T ss_pred ee-Eecccc-eeccCCCceEEEEChHHHHHHHhc---cccccCCeEEEEECCCCCCccHHHHHHHHHHHhc------ccC
Confidence 44 222211 111223445667777766543332 2447899999999999884344444555554442 147
Q ss_pred eEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEec
Q 043190 846 VRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVS 925 (1492)
Q Consensus 846 ~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~ 925 (1492)
.|+++||||+++. +..+.... +..+.+.. .++... ....+..+.. .++++||||+
T Consensus 309 ~q~il~SAT~~~~--~~~~~~~~------------~~~~~v~~-~~~~~~--------~~~ll~~l~~--~~~~~LVF~~ 363 (618)
T 2whx_A 309 AAAIFMTATPPGS--TDPFPQSN------------SPIEDIER-EIPERS--------WNTGFDWITD--YQGKTVWFVP 363 (618)
T ss_dssp CEEEEECSSCTTC--CCSSCCCS------------SCEEEEEC-CCCSSC--------CSSSCHHHHH--CCSCEEEECS
T ss_pred ccEEEEECCCchh--hhhhhccC------------Cceeeecc-cCCHHH--------HHHHHHHHHh--CCCCEEEEEC
Confidence 8999999999752 11111100 00011110 011100 0112222332 3679999999
Q ss_pred ChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEE
Q 043190 926 SRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVL 1005 (1492)
Q Consensus 926 s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vL 1005 (1492)
|++.|+.++..|.+ .+..+..+||+ +|..+++.|++|+++||
T Consensus 364 s~~~a~~l~~~L~~----------------------------------~g~~v~~lhg~----~R~~~l~~F~~g~~~VL 405 (618)
T 2whx_A 364 SIKAGNDIANCLRK----------------------------------SGKRVIQLSRK----TFDTEYPKTKLTDWDFV 405 (618)
T ss_dssp SHHHHHHHHHHHHH----------------------------------TTCCEEEECTT----THHHHTTHHHHSCCSEE
T ss_pred ChhHHHHHHHHHHH----------------------------------cCCcEEEEChH----HHHHHHHhhcCCCcEEE
Confidence 99999999988743 25678889984 78889999999999999
Q ss_pred EeccccccccCCCCcEEEEecceeeeCc----------cCccccCCHHHHHHhhcccCCCCCCCceEEEEEec
Q 043190 1006 VCTSTLAWGVNLPAHLVIIKGTEYYDGK----------TKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVH 1068 (1492)
Q Consensus 1006 vaT~~l~~Gvdip~~~~VI~~~~~~~~~----------~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~ 1068 (1492)
|||+++++|+|+| +++||+....+++. .....+.+.++|+||+|||||.| ...|.|++++.
T Consensus 406 VaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g-~~~G~ai~l~~ 476 (618)
T 2whx_A 406 VTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNP-AQEDDQYVFSG 476 (618)
T ss_dssp EECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEECS
T ss_pred EECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCC-CCCCeEEEEcc
Confidence 9999999999998 78777644333321 01113467999999999999986 24899999986
No 50
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.97 E-value=4.2e-30 Score=317.66 Aligned_cols=286 Identities=20% Similarity=0.111 Sum_probs=192.5
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEE
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEM 769 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~ 769 (1492)
++.|.+ +..++.++++++++||||||||.++.+++++. +.+++|++|+|+||.|+++++.+.+ +..+...
T Consensus 219 ~~~q~~-i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~-----g~~vLVl~PTReLA~Qia~~l~~~~----g~~vg~~ 288 (666)
T 3o8b_A 219 FTDNSS-PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----GYKVLVLNPSVAATLGFGAYMSKAH----GIDPNIR 288 (666)
T ss_dssp CCCCCS-CCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT-----TCCEEEEESCHHHHHHHHHHHHHHH----SCCCEEE
T ss_pred HHHHHH-HHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC-----CCeEEEEcchHHHHHHHHHHHHHHh----CCCeeEE
Confidence 344444 44444478899999999999999999998873 6799999999999999998876655 5566677
Q ss_pred cCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEE
Q 043190 770 TGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFI 849 (1492)
Q Consensus 770 ~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii 849 (1492)
.|+.. ...+++|+|+||++| +++ ....+++++++||||||+++..+...+..++..+. . .....++
T Consensus 289 vG~~~----~~~~~~IlV~TPGrL---l~~--~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~----~-~~~~lli 354 (666)
T 3o8b_A 289 TGVRT----ITTGAPVTYSTYGKF---LAD--GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAE----T-AGARLVV 354 (666)
T ss_dssp CSSCE----ECCCCSEEEEEHHHH---HHT--TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTT----T-TTCSEEE
T ss_pred ECcEe----ccCCCCEEEECcHHH---HhC--CCcccCcccEEEEccchhcCccHHHHHHHHHHhhh----h-cCCceEE
Confidence 77643 235789999999987 232 23347789999999999875443333433333321 1 2234478
Q ss_pred EEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHH
Q 043190 850 GLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQ 929 (1492)
Q Consensus 850 ~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~ 929 (1492)
++|||+++. +.... +....... .+... ... ...... .....++++||||++++.
T Consensus 355 l~SAT~~~~------i~~~~-----------p~i~~v~~-~~~~~--i~~---~~~~~~---l~~~~~~~vLVFv~Tr~~ 408 (666)
T 3o8b_A 355 LATATPPGS------VTVPH-----------PNIEEVAL-SNTGE--IPF---YGKAIP---IEAIRGGRHLIFCHSKKK 408 (666)
T ss_dssp EEESSCTTC------CCCCC-----------TTEEEEEC-BSCSS--EEE---TTEEEC---GGGSSSSEEEEECSCHHH
T ss_pred EECCCCCcc------cccCC-----------cceEEEee-cccch--hHH---HHhhhh---hhhccCCcEEEEeCCHHH
Confidence 889999862 11100 00000000 00000 000 000000 112357899999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecc
Q 043190 930 TRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTS 1009 (1492)
Q Consensus 930 ~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~ 1009 (1492)
++.++..|.+ .+..+..+||+|++++ |+++..+|||||+
T Consensus 409 ae~la~~L~~----------------------------------~g~~v~~lHG~l~q~e-------r~~~~~~VLVATd 447 (666)
T 3o8b_A 409 CDELAAKLSG----------------------------------LGINAVAYYRGLDVSV-------IPTIGDVVVVATD 447 (666)
T ss_dssp HHHHHHHHHT----------------------------------TTCCEEEECTTSCGGG-------SCSSSCEEEEECT
T ss_pred HHHHHHHHHh----------------------------------CCCcEEEecCCCCHHH-------HHhCCCcEEEECC
Confidence 9999987743 2567899999999886 4566679999999
Q ss_pred ccccccCCCCcEEEEecc----e--e--eeCccC---ccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1010 TLAWGVNLPAHLVIIKGT----E--Y--YDGKTK---RYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1010 ~l~~Gvdip~~~~VI~~~----~--~--~~~~~~---~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
++++|||+| +++||+.. . . ||+..+ ...+.+.++|+||+||+|| | ..|. +.|+++.+
T Consensus 448 VaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G~-i~lvt~~e 515 (666)
T 3o8b_A 448 ALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRGI-YRFVTPGE 515 (666)
T ss_dssp THHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCEE-EEESCCCC
T ss_pred hHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCCE-EEEEecch
Confidence 999999998 88888522 1 1 233211 0135568999999999999 6 7899 88887655
No 51
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.97 E-value=1.7e-29 Score=311.81 Aligned_cols=329 Identities=16% Similarity=0.128 Sum_probs=204.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+ .|+|+|..+++.++ .|+ +..++||+|||++|.+|++..... +..+++++||++||.|.++.+.. +...+|+
T Consensus 72 g~-~p~~VQ~~~i~~ll-~G~--Iaem~TGsGKTlaf~LP~l~~~l~--g~~vlVltPTreLA~Q~~e~~~~-l~~~lgl 144 (853)
T 2fsf_A 72 GM-RHFDVQLLGGMVLN-ERC--IAEMRTGEGKTLTATLPAYLNALT--GKGVHVVTVNDYLAQRDAENNRP-LFEFLGL 144 (853)
T ss_dssp SC-CCCHHHHHHHHHHH-SSE--EEECCTTSCHHHHHHHHHHHHHTT--SSCCEEEESSHHHHHHHHHHHHH-HHHHTTC
T ss_pred CC-CCChHHHhhccccc-CCe--eeeecCCchHHHHHHHHHHHHHHc--CCcEEEEcCCHHHHHHHHHHHHH-HHHhcCC
Confidence 65 69999999999988 565 999999999999999999865433 67899999999999999988877 4555699
Q ss_pred EEEEEcCCCCcchhcc-CCCcEEEECchhh-hHhhhccc----CccccCcccEEEEecccccC-CC-C------------
Q 043190 765 EMVEMTGDYTPDLMAL-LSADIIISTPEKW-DGISRNWH----SRNYVKKVGLMILDEIHLLG-AE-R------------ 824 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~-~~~~Iiv~Tpe~l-~~l~~~~~----~~~~l~~i~liViDEaH~l~-~~-~------------ 824 (1492)
+++.+.|+.+.+.+.. .+++|+|+||+++ .++++... ....+++++++|+||||.+. ++ +
T Consensus 145 ~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~~~ 224 (853)
T 2fsf_A 145 TVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAEDS 224 (853)
T ss_dssp CEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC----
T ss_pred eEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCccc
Confidence 9999999877543332 3689999999997 45555422 13456899999999999664 32 2
Q ss_pred ---ccHHHHHHHHHHHhh----------hcc---CCceEEE------------------------EEcCCCCC-hHHHH-
Q 043190 825 ---GPILEVIVSRMRYIS----------SQT---ERAVRFI------------------------GLSTALAN-AGDLA- 862 (1492)
Q Consensus 825 ---g~~~~~i~~~l~~~~----------~~~---~~~~~ii------------------------~lSATl~~-~~~~~- 862 (1492)
...+..++..+..-. ... .+..++. ++|||.+. ...+.
T Consensus 225 ~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i~~ 304 (853)
T 2fsf_A 225 SEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTA 304 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHHHH
Confidence 123344444443100 000 0122222 67887542 11110
Q ss_pred ----HH-hcCCcc--------------------------e---------eEecCCC------------ccc---------
Q 043190 863 ----DW-LGVGEI--------------------------G---------LFNFKPS------------VRP--------- 881 (1492)
Q Consensus 863 ----~~-l~~~~~--------------------------~---------~~~~~~~------------~r~--------- 881 (1492)
.. +..+.. + -+...+. ++.
T Consensus 305 al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~GmTG 384 (853)
T 2fsf_A 305 ALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG 384 (853)
T ss_dssp ----------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEEEC
T ss_pred HHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcCCC
Confidence 00 000000 0 0000000 000
Q ss_pred ------------cCcEEEEeccCCcc-----------ccccccccChhHHHHHhh-cCCCCCeeEEecChHHHHHHHHHH
Q 043190 882 ------------VPLEVHIQGYPGKF-----------YCPRMNSMNKPAYAAICT-HSPTKPVLIFVSSRRQTRLTALDL 937 (1492)
Q Consensus 882 ------------~~l~~~~~~~~~~~-----------~~~~~~~~~~~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L 937 (1492)
+.+.+.. +|... +... ......+...+.. +..+.|+||||+|+..++.++..|
T Consensus 385 Ta~te~~ef~~iY~l~vv~--IPtn~p~~R~d~~d~v~~~~-~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L 461 (853)
T 2fsf_A 385 TADTEAFEFSSIYKLDTVV--VPTNRPMIRKDLPDLVYMTE-AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNEL 461 (853)
T ss_dssp TTCCCHHHHHHHHCCEEEE--CCCSSCCCCEECCCEEESSH-HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHH
T ss_pred CchhHHHHHHHHhCCcEEE--cCCCCCceeecCCcEEEeCH-HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHH
Confidence 0011111 11110 1110 0001112223322 356789999999999999999888
Q ss_pred HHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCC
Q 043190 938 IQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1017 (1492)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdi 1017 (1492)
.+ .++.+..+||+....+|..+.++|+.| .|+|||++++||+||
T Consensus 462 ~~----------------------------------~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI 505 (853)
T 2fsf_A 462 TK----------------------------------AGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDI 505 (853)
T ss_dssp HH----------------------------------TTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCC
T ss_pred HH----------------------------------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCc
Confidence 44 266788999999999999999999998 699999999999999
Q ss_pred CCc-------------------------------------EEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCc
Q 043190 1018 PAH-------------------------------------LVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQH 1060 (1492)
Q Consensus 1018 p~~-------------------------------------~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~ 1060 (1492)
+.. .+||+ |+ .+-+...|.||+||+||.| ++
T Consensus 506 ~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~----te------~pes~riy~qr~GRTGRqG--d~ 573 (853)
T 2fsf_A 506 VLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG----TE------RHESRRIDNQLRGRSGRQG--DA 573 (853)
T ss_dssp CTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE----SS------CCSSHHHHHHHHTTSSGGG--CC
T ss_pred cCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE----cc------CCCCHHHHHhhccccccCC--CC
Confidence 973 68997 32 2335889999999999988 99
Q ss_pred eEEEEEecCCc
Q 043190 1061 GKAVILVHEPK 1071 (1492)
Q Consensus 1061 G~~i~l~~~~~ 1071 (1492)
|.++.+++..+
T Consensus 574 G~s~~fls~eD 584 (853)
T 2fsf_A 574 GSSRFYLSMED 584 (853)
T ss_dssp EEEEEEEETTS
T ss_pred eeEEEEecccH
Confidence 99999987665
No 52
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=3.6e-30 Score=323.36 Aligned_cols=312 Identities=16% Similarity=0.179 Sum_probs=209.3
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
..|+|+|.++++.++ .++++++++|||+|||++++.++...+.. ++++++|++|+++|+.|.++++.+ +....+.++
T Consensus 112 ~~l~~~Q~~ai~~~~-~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~vlvl~P~~~L~~Q~~~~~~~-~~~~~~~~v 188 (510)
T 2oca_A 112 IEPHWYQKDAVFEGL-VNRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVD-YRLFSHAMI 188 (510)
T ss_dssp ECCCHHHHHHHHHHH-HHSEEEEECCSTTTHHHHHHHHHHHHHHH-CSSEEEEEESSHHHHHHHHHHHHH-TTSSCGGGE
T ss_pred CCCCHHHHHHHHHHH-hcCCcEEEeCCCCCHHHHHHHHHHHHHhC-CCCeEEEEECcHHHHHHHHHHHHH-hhcCCccce
Confidence 369999999999998 56899999999999999999999887754 345999999999999999999965 444435678
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCce
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAV 846 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~ 846 (1492)
..++|+..........++|+|+||+.+. +. ....++++++|||||+|.+.. ..+.. +........
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~i~T~~~l~---~~--~~~~~~~~~liIiDE~H~~~~---~~~~~-------il~~~~~~~ 253 (510)
T 2oca_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVV---KQ--PKEWFSQFGMMMNDECHLATG---KSISS-------IISGLNNCM 253 (510)
T ss_dssp EECGGGCCTTGGGCTTCSEEEEEHHHHT---TS--CGGGGGGEEEEEEETGGGCCH---HHHHH-------HGGGCTTCC
T ss_pred EEEecCCccccccccCCcEEEEeHHHHh---hc--hhhhhhcCCEEEEECCcCCCc---ccHHH-------HHHhcccCc
Confidence 8888876655444567899999999653 22 224577899999999998853 22222 223344577
Q ss_pred EEEEEcCCCCChH----HHHHHhcCCcceeEecCCC-------ccccCcEEEEeccCC--------ccccccccc-----
Q 043190 847 RFIGLSTALANAG----DLADWLGVGEIGLFNFKPS-------VRPVPLEVHIQGYPG--------KFYCPRMNS----- 902 (1492)
Q Consensus 847 ~ii~lSATl~~~~----~~~~~l~~~~~~~~~~~~~-------~r~~~l~~~~~~~~~--------~~~~~~~~~----- 902 (1492)
++++||||+++.. .+..+++.. ++..... ..+..+.......+. ..+......
T Consensus 254 ~~l~lSATp~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (510)
T 2oca_A 254 FKFGLSGSLRDGKANIMQYVGMFGEI---FKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLS 330 (510)
T ss_dssp EEEEEESCGGGCSSCHHHHHHHHCSE---ECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCH
T ss_pred EEEEEEeCCCCCcccHHHhHHhhCCe---EEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccH
Confidence 9999999996531 223334321 1111111 000011111111110 001100000
Q ss_pred -cChhHHHHHhhc-C-CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceE
Q 043190 903 -MNKPAYAAICTH-S-PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIG 979 (1492)
Q Consensus 903 -~~~~~~~~l~~~-~-~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 979 (1492)
....+...+... . .+++++||++ .+.+..++..|.+ .+..+.
T Consensus 331 ~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~----------------------------------~~~~v~ 375 (510)
T 2oca_A 331 KRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKN----------------------------------EYDKVY 375 (510)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHT----------------------------------TCSSEE
T ss_pred HHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHH----------------------------------cCCCeE
Confidence 000111112111 2 3445566665 7777777666532 123789
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEec-cccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCC
Q 043190 980 LHHAGLNDKDRSLVEELFANNKIQVLVCT-STLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD 1058 (1492)
Q Consensus 980 ~~h~~l~~~~R~~v~~~f~~g~~~vLvaT-~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~ 1058 (1492)
.+||+++..+|..+++.|++|+.+||||| +++++|+|+|++++||. +++ +.+..+|.||+||+||.|
T Consensus 376 ~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~----~~~------~~s~~~~~Q~~GR~gR~g-- 443 (510)
T 2oca_A 376 YVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL----AHG------VKSKIIVLQTIGRVLRKH-- 443 (510)
T ss_dssp EESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE----SSC------CCSCCHHHHHHHHHHTTT--
T ss_pred EEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE----eCC------CCCHHHHHHHHhcccccC--
Confidence 99999999999999999999999999999 99999999999999997 443 235789999999999988
Q ss_pred CceEEEEE
Q 043190 1059 QHGKAVIL 1066 (1492)
Q Consensus 1059 ~~G~~i~l 1066 (1492)
..|.++++
T Consensus 444 ~~~~~v~i 451 (510)
T 2oca_A 444 GSKTIATV 451 (510)
T ss_dssp CCCCCCEE
T ss_pred CCCceEEE
Confidence 44433333
No 53
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.96 E-value=7.1e-30 Score=312.82 Aligned_cols=289 Identities=15% Similarity=0.118 Sum_probs=187.4
Q ss_pred HhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcch
Q 043190 698 HILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDL 777 (1492)
Q Consensus 698 ~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~ 777 (1492)
+.++.++++++++||||||||++|++|+++.+.. .+.+++|++|+|+||.|+++.+. |..+....+.....
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~~~- 85 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-QRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQRE- 85 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-TTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC-------
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccccC-
Confidence 5556688999999999999999999999987654 36899999999999999988764 44444433332211
Q ss_pred hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 778 MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 778 ~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
......+.++|.+.+...+. ....++++++|||||||.++......+ ..+.... ...+.++++||||++.
T Consensus 86 -~t~~~~i~~~~~~~l~~~l~---~~~~l~~~~~iViDEaH~~~~~~~~~~----~~~~~~~--~~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 86 -HQGNEIVDVMCHATLTHRLM---SPNRVPNYNLFVMDEAHFTDPASIAAR----GYIATKV--ELGEAAAIFMTATPPG 155 (459)
T ss_dssp ---CCCSEEEEEHHHHHHHHH---SCC-CCCCSEEEESSTTCCSHHHHHHH----HHHHHHH--HTTSCEEEEECSSCTT
T ss_pred -CCCCcEEEEEchHHHHHHhh---ccccccCCcEEEEECCccCCchhhHHH----HHHHHHh--ccCCccEEEEEcCCCc
Confidence 12234567788776543333 234578999999999997522111122 2222221 1357899999999974
Q ss_pred hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHH
Q 043190 858 AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDL 937 (1492)
Q Consensus 858 ~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L 937 (1492)
. +. .+... ..++.......+...+. ..+..+.. .++++||||++++.++.++..|
T Consensus 156 ~--~~-----------~~~~~--~~pi~~~~~~~~~~~~~--------~~~~~l~~--~~~~~LVF~~s~~~~~~l~~~L 210 (459)
T 2z83_A 156 T--TD-----------PFPDS--NAPIHDLQDEIPDRAWS--------SGYEWITE--YAGKTVWFVASVKMGNEIAMCL 210 (459)
T ss_dssp C--CC-----------SSCCC--SSCEEEEECCCCSSCCS--------SCCHHHHH--CCSCEEEECSCHHHHHHHHHHH
T ss_pred c--hh-----------hhccC--CCCeEEecccCCcchhH--------HHHHHHHh--cCCCEEEEeCChHHHHHHHHHH
Confidence 2 11 11111 11221111111111111 11222222 2679999999999999999877
Q ss_pred HHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCC
Q 043190 938 IQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNL 1017 (1492)
Q Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdi 1017 (1492)
.. .+..+..+|+. +|..+++.|++|+++|||||+++++|+|+
T Consensus 211 ~~----------------------------------~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDi 252 (459)
T 2z83_A 211 QR----------------------------------AGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANF 252 (459)
T ss_dssp HH----------------------------------TTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCC
T ss_pred Hh----------------------------------cCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeec
Confidence 43 25678889984 78889999999999999999999999999
Q ss_pred CCcEEEEeccee------eeCccCc----cccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 1018 PAHLVIIKGTEY------YDGKTKR----YVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 1018 p~~~~VI~~~~~------~~~~~~~----~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
|+ .+||+.... |++..+. -.+.+..+|+||+|||||.| ...|.|++++...
T Consensus 253 p~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g-~~~G~~~~~~~~~ 313 (459)
T 2z83_A 253 GA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNP-NQVGDEYHYGGAT 313 (459)
T ss_dssp SC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCT-TCCCEEEEECSCC
T ss_pred CC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCC-CCCCeEEEEEccc
Confidence 99 888863211 1211110 14457999999999999987 1289999998775
No 54
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.96 E-value=5e-30 Score=318.77 Aligned_cols=302 Identities=18% Similarity=0.182 Sum_probs=208.1
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE-E
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE-M 766 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~-v 766 (1492)
.|+|+|.++++.++ .++++++++|||+|||++++.++... +.+++|++|+++|+.|.++++.+ | |.+ +
T Consensus 93 ~l~~~Q~~ai~~i~-~~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~-~----~~~~v 161 (472)
T 2fwr_A 93 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-F----GEEYV 161 (472)
T ss_dssp CBCHHHHHHHHHHT-TTTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGG-G----CGGGE
T ss_pred CcCHHHHHHHHHHH-hcCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHh-C----CCcce
Confidence 59999999999998 56789999999999999999998875 68999999999999998877655 3 778 9
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCce
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAV 846 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~ 846 (1492)
..++|+... ..+|+|+||+.+...... ..+++++||+||+|.+.+.. +..++.. -...
T Consensus 162 ~~~~g~~~~------~~~Ivv~T~~~l~~~~~~-----~~~~~~liIvDEaH~~~~~~---~~~~~~~--------~~~~ 219 (472)
T 2fwr_A 162 GEFSGRIKE------LKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAES---YVQIAQM--------SIAP 219 (472)
T ss_dssp EEBSSSCBC------CCSEEEEEHHHHHHTHHH-----HTTTCSEEEEETGGGTTSTT---THHHHHT--------CCCS
T ss_pred EEECCCcCC------cCCEEEEEcHHHHHHHHH-----hcCCCCEEEEECCcCCCChH---HHHHHHh--------cCCC
Confidence 999887643 478999999987554432 12468999999999886432 2222221 1357
Q ss_pred EEEEEcCCCCChH----HHHHHhcCCcce--eEec----CCCccccCcEEEEecc------------------------C
Q 043190 847 RFIGLSTALANAG----DLADWLGVGEIG--LFNF----KPSVRPVPLEVHIQGY------------------------P 892 (1492)
Q Consensus 847 ~ii~lSATl~~~~----~~~~~l~~~~~~--~~~~----~~~~r~~~l~~~~~~~------------------------~ 892 (1492)
+++++|||+.+.+ .+..+++..... ...+ ........+....... .
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 8899999997532 234444321000 0000 0001111111100000 0
Q ss_pred Cccccccc-------------------------cccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCC
Q 043190 893 GKFYCPRM-------------------------NSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETP 947 (1492)
Q Consensus 893 ~~~~~~~~-------------------------~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~ 947 (1492)
...+.... ...+......+.....++++||||++++.++.++..|
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l---------- 369 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF---------- 369 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT----------
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHh----------
Confidence 00000000 0000011122223356789999999999888777544
Q ss_pred cccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecc
Q 043190 948 RQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGT 1027 (1492)
Q Consensus 948 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~ 1027 (1492)
++..+||+++..+|..+++.|++|+++|||||+++++|+|+|++++||.
T Consensus 370 -----------------------------~~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~-- 418 (472)
T 2fwr_A 370 -----------------------------LIPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI-- 418 (472)
T ss_dssp -----------------------------TCCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE--
T ss_pred -----------------------------CcceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE--
Confidence 3567899999999999999999999999999999999999999999997
Q ss_pred eeeeCccCccccCCHHHHHHhhcccCCCCCC-CceEEEEEecCCc
Q 043190 1028 EYYDGKTKRYVDFPITDILQMMGRAGRPQYD-QHGKAVILVHEPK 1071 (1492)
Q Consensus 1028 ~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~-~~G~~i~l~~~~~ 1071 (1492)
|+++ .+...|.||+|||||.|.+ ....+|.++..+.
T Consensus 419 --~~~~------~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 419 --MSGS------GSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp --ECCS------SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred --ECCC------CCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 5533 3678999999999999855 4566666776543
No 55
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.96 E-value=1.2e-29 Score=308.62 Aligned_cols=276 Identities=14% Similarity=0.134 Sum_probs=176.5
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
.++++++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.+. +..+....+...
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-~~~~~lil~Ptr~La~Q~~~~l~-------~~~v~~~~~~~~------- 70 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECAR-RRLRTLVLAPTRVVLSEMKEAFH-------GLDVKFHTQAFS------- 70 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEESSCCC-------
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-cCCeEEEEcchHHHHHHHHHHHh-------cCCeEEecccce-------
Confidence 478999999999999999999999987655 36799999999999999988764 223333332211
Q ss_pred CCcEEEECchhhhHhhhc------ccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 782 SADIIISTPEKWDGISRN------WHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l~~l~~~------~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
.++||+++..++.. ......+++++++|+||+|+++.. ....+..+..... ..+.++++||||+
T Consensus 71 ----~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~----~~~~~~~~~~~~~--~~~~~~l~~SAT~ 140 (440)
T 1yks_A 71 ----AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPA----SIAARGWAAHRAR--ANESATILMTATP 140 (440)
T ss_dssp ----CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHH----HHHHHHHHHHHHH--TTSCEEEEECSSC
T ss_pred ----eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcc----hHHHHHHHHHHhc--cCCceEEEEeCCC
Confidence 37788776443332 112234789999999999988222 2222222222221 3578999999998
Q ss_pred CChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHH
Q 043190 856 ANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTAL 935 (1492)
Q Consensus 856 ~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~ 935 (1492)
+.. +..+. .. ..++.......+... ....+..+.. .++++||||++++.++.++.
T Consensus 141 ~~~--~~~~~-----------~~--~~~~~~~~~~~~~~~--------~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~ 195 (440)
T 1yks_A 141 PGT--SDEFP-----------HS--NGEIEDVQTDIPSEP--------WNTGHDWILA--DKRPTAWFLPSIRAANVMAA 195 (440)
T ss_dssp TTC--CCSSC-----------CC--SSCEEEEECCCCSSC--------CSSSCHHHHH--CCSCEEEECSCHHHHHHHHH
T ss_pred Cch--hhhhh-----------hc--CCCeeEeeeccChHH--------HHHHHHHHHh--cCCCEEEEeCCHHHHHHHHH
Confidence 642 11111 01 111111111111100 0112222332 26799999999999999998
Q ss_pred HHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEecccccccc
Q 043190 936 DLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGV 1015 (1492)
Q Consensus 936 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gv 1015 (1492)
.|.+ .+..+..+|| ++|..+++.|++|+++|||||+++++|+
T Consensus 196 ~L~~----------------------------------~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~Gi 237 (440)
T 1yks_A 196 SLRK----------------------------------AGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGA 237 (440)
T ss_dssp HHHH----------------------------------TTCCEEECCS----SSCC--------CCCSEEEESSSTTCCT
T ss_pred HHHH----------------------------------cCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheee
Confidence 7743 2567899999 5788999999999999999999999999
Q ss_pred CCCCcEEEEecce----eeeCccC-----ccccCCHHHHHHhhcccCCCCCCCceEEEEEe
Q 043190 1016 NLPAHLVIIKGTE----YYDGKTK-----RYVDFPITDILQMMGRAGRPQYDQHGKAVILV 1067 (1492)
Q Consensus 1016 dip~~~~VI~~~~----~~~~~~~-----~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~ 1067 (1492)
|+| +++||+... .|..... ...+.+.++|+||+||+||.| +..|.|++++
T Consensus 238 Dip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g-~~~g~~~~l~ 296 (440)
T 1yks_A 238 NLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNP-NRDGDSYYYS 296 (440)
T ss_dssp TCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCT-TCCCEEEEEC
T ss_pred ccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCC-CCCceEEEEe
Confidence 999 888885221 1100000 113567999999999999973 2689999996
No 56
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.96 E-value=5.4e-30 Score=323.36 Aligned_cols=290 Identities=14% Similarity=0.098 Sum_probs=191.9
Q ss_pred CCCHHHH-----HHHHhhh-----cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 688 HFNPIQT-----QIFHILY-----HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 688 ~l~~~Q~-----~~i~~~~-----~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
+|+++|. ++++.++ ..+++++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.+..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-~~~~~lilaPTr~La~Q~~~~l~~- 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-KRLRTAVLAPTRVVAAEMAEALRG- 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTTT-
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEccHHHHHHHHHHHHhc-
Confidence 8999999 8998765 368999999999999999999999987655 368999999999999999887642
Q ss_pred hhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhh------cccCccccCcccEEEEecccccCCCCccHHHHH
Q 043190 758 LVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISR------NWHSRNYVKKVGLMILDEIHLLGAERGPILEVI 831 (1492)
Q Consensus 758 ~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~------~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i 831 (1492)
. ++ ....+... .++||+++..++. .......+++++++||||+|+++ ......
T Consensus 293 ---~-~i--~~~~~~l~-----------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~----~~~~~~ 351 (673)
T 2wv9_A 293 ---L-PV--RYLTPAVQ-----------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTD----PASIAA 351 (673)
T ss_dssp ---S-CC--EECCC--------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCC----HHHHHH
T ss_pred ---C-Ce--eeeccccc-----------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccC----ccHHHH
Confidence 1 22 22211111 1556655432222 11122357899999999999872 222222
Q ss_pred HHHHHHhhhccCCceEEEEEcCCCCChHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHH
Q 043190 832 VSRMRYISSQTERAVRFIGLSTALANAGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAI 911 (1492)
Q Consensus 832 ~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 911 (1492)
...+..... ....++++||||++.. +..+... ..++......++... ....+..+
T Consensus 352 ~~~l~~~~~--~~~~~vl~~SAT~~~~-------------i~~~~~~--~~~i~~v~~~~~~~~--------~~~~l~~l 406 (673)
T 2wv9_A 352 RGYIATRVE--AGEAAAIFMTATPPGT-------------SDPFPDT--NSPVHDVSSEIPDRA--------WSSGFEWI 406 (673)
T ss_dssp HHHHHHHHH--TTSCEEEEECSSCTTC-------------CCSSCCC--SSCEEEEECCCCSSC--------CSSCCHHH
T ss_pred HHHHHHhcc--ccCCcEEEEcCCCChh-------------hhhhccc--CCceEEEeeecCHHH--------HHHHHHHH
Confidence 333333221 2578999999999641 1111111 112211111111110 11122223
Q ss_pred hhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHH
Q 043190 912 CTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRS 991 (1492)
Q Consensus 912 ~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 991 (1492)
.. .++++||||++++.++.++..|.+ .+..+..+|| ++|.
T Consensus 407 ~~--~~~~~lVF~~s~~~~e~la~~L~~----------------------------------~g~~v~~lHg----~eR~ 446 (673)
T 2wv9_A 407 TD--YAGKTVWFVASVKMSNEIAQCLQR----------------------------------AGKRVIQLNR----KSYD 446 (673)
T ss_dssp HS--CCSCEEEECSSHHHHHHHHHHHHT----------------------------------TTCCEEEECS----SSHH
T ss_pred Hh--CCCCEEEEECCHHHHHHHHHHHHh----------------------------------CCCeEEEeCh----HHHH
Confidence 32 478999999999999999887732 2567899999 4899
Q ss_pred HHHHHHhcCCceEEEeccccccccCCCCcEEEEeccee------eeCccC----ccccCCHHHHHHhhcccCCCCCCCce
Q 043190 992 LVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEY------YDGKTK----RYVDFPITDILQMMGRAGRPQYDQHG 1061 (1492)
Q Consensus 992 ~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~------~~~~~~----~~~~~~~~~~~Qr~GRagR~g~~~~G 1061 (1492)
.+++.|++|+++|||||+++++|||+| +.+||+.... |+...+ ...+.+.++|+||+||+||.+ +..|
T Consensus 447 ~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~-g~~G 524 (673)
T 2wv9_A 447 TEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNP-SQIG 524 (673)
T ss_dssp HHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCS-SCCC
T ss_pred HHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCC-CCCC
Confidence 999999999999999999999999999 8888863211 222100 013456899999999999973 3789
Q ss_pred EEEEEe
Q 043190 1062 KAVILV 1067 (1492)
Q Consensus 1062 ~~i~l~ 1067 (1492)
.|++++
T Consensus 525 ~ai~l~ 530 (673)
T 2wv9_A 525 DEYHYG 530 (673)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 999996
No 57
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.96 E-value=3.2e-28 Score=300.28 Aligned_cols=335 Identities=15% Similarity=0.119 Sum_probs=220.9
Q ss_pred hcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc
Q 043190 683 LYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762 (1492)
Q Consensus 683 ~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~ 762 (1492)
..|+ .|+|+|..+++.++ .|+ |..++||+|||++|.+|++..... +..+++++||+.||.|.++.+.. +...+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll-~G~--Iaem~TGeGKTLa~~LP~~l~aL~--g~~v~VvTpTreLA~Qdae~m~~-l~~~l 179 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALH-LGN--VAEMKTGEGKTLTCVLPAYLNALA--GNGVHIVTVNDYLAKRDSEWMGR-VHRFL 179 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHH-TTE--EEECCTTSCHHHHTHHHHHHHHTT--TSCEEEEESSHHHHHHHHHHHHH-HHHHT
T ss_pred HcCC-CCCHHHHHHHHhHh-cCC--EEEecCCCccHHHHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHHHHHH-HHhhc
Confidence 3488 79999999999987 555 999999999999999999754333 67899999999999999988776 55566
Q ss_pred CCEEEEEcCCCCcchhcc-CCCcEEEECchhh-hHhhhccc----CccccCcccEEEEecccccC-C-CCccH-------
Q 043190 763 GKEMVEMTGDYTPDLMAL-LSADIIISTPEKW-DGISRNWH----SRNYVKKVGLMILDEIHLLG-A-ERGPI------- 827 (1492)
Q Consensus 763 g~~v~~~~g~~~~~~~~~-~~~~Iiv~Tpe~l-~~l~~~~~----~~~~l~~i~liViDEaH~l~-~-~~g~~------- 827 (1492)
|++|+++.|+.+.+.+.. ..++|+|+||++| .++++... ....++.+.++||||||.+. + .+.|.
T Consensus 180 GLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~ 259 (922)
T 1nkt_A 180 GLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPAD 259 (922)
T ss_dssp TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECC
T ss_pred CCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCC
Confidence 999999999877543322 3689999999997 34444321 23456789999999999653 3 22210
Q ss_pred -HHHHHHHHHHhhhccC---------CceEEE-----------------EEcCCCCC-hHHHHH------HhcCCcceeE
Q 043190 828 -LEVIVSRMRYISSQTE---------RAVRFI-----------------GLSTALAN-AGDLAD------WLGVGEIGLF 873 (1492)
Q Consensus 828 -~~~i~~~l~~~~~~~~---------~~~~ii-----------------~lSATl~~-~~~~~~------~l~~~~~~~~ 873 (1492)
...+...+..+...++ +..++. ++|||.+. ...+.. ++..+...++
T Consensus 260 ~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV 339 (922)
T 1nkt_A 260 GASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIV 339 (922)
T ss_dssp CCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEE
T ss_pred cchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceee
Confidence 0111222222222233 466777 78999765 222221 1111111110
Q ss_pred e------cC-CCccc-------------------cCc---EEEEecc---------------------------------
Q 043190 874 N------FK-PSVRP-------------------VPL---EVHIQGY--------------------------------- 891 (1492)
Q Consensus 874 ~------~~-~~~r~-------------------~~l---~~~~~~~--------------------------------- 891 (1492)
. .. ...|. +.+ ......+
T Consensus 340 ~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 419 (922)
T 1nkt_A 340 RDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLG 419 (922)
T ss_dssp CSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCE
T ss_pred ecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCC
Confidence 0 00 00000 000 0000000
Q ss_pred ----CCccccccc----------cccChhHHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChH
Q 043190 892 ----PGKFYCPRM----------NSMNKPAYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEE 956 (1492)
Q Consensus 892 ----~~~~~~~~~----------~~~~~~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 956 (1492)
|......+. ......+...+.. +..+.|+||||+|+..++.++..|.+
T Consensus 420 vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~----------------- 482 (922)
T 1nkt_A 420 VVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTK----------------- 482 (922)
T ss_dssp EEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHH-----------------
T ss_pred eEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH-----------------
Confidence 000000000 0000011222322 34567999999999999999988744
Q ss_pred HHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCc----------------
Q 043190 957 DLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAH---------------- 1020 (1492)
Q Consensus 957 ~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~---------------- 1020 (1492)
.+..+..+||+....++..+.++|+.| .|+|||++++||+||+..
T Consensus 483 -----------------~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~ 543 (922)
T 1nkt_A 483 -----------------RRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGL 543 (922)
T ss_dssp -----------------TTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTC
T ss_pred -----------------CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccc
Confidence 266788999999888888888999888 699999999999999964
Q ss_pred ------------------------------------EEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEE
Q 043190 1021 ------------------------------------LVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAV 1064 (1492)
Q Consensus 1021 ------------------------------------~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i 1064 (1492)
.+||+ |+ .+-+...|.||+||+||.| ++|.++
T Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~----te------~pes~riy~qr~GRTGRqG--dpG~s~ 611 (922)
T 1nkt_A 544 DPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG----TE------RHESRRIDNQLRGRSGRQG--DPGESR 611 (922)
T ss_dssp CTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE----CS------CCSSHHHHHHHHHTSSGGG--CCEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe----cc------CCCCHHHHHHHhcccccCC--CCeeEE
Confidence 58887 32 2335889999999999988 999999
Q ss_pred EEecCCcH
Q 043190 1065 ILVHEPKK 1072 (1492)
Q Consensus 1065 ~l~~~~~~ 1072 (1492)
.+++..+.
T Consensus 612 fflSleD~ 619 (922)
T 1nkt_A 612 FYLSLGDE 619 (922)
T ss_dssp EEEETTSH
T ss_pred EEechhHH
Confidence 99887653
No 58
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.96 E-value=6.5e-28 Score=292.92 Aligned_cols=280 Identities=16% Similarity=0.106 Sum_probs=181.4
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSA 783 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~ 783 (1492)
+++++++||||||||++|++|+++.+.. .+.+++|++||++||.|+++.+. |..+...+|.... ....+.
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~-~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~--~~~~~~ 71 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK-KRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS--ERTGNE 71 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH-TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC-----------CCC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc--cCCCCc
Confidence 6899999999999999999999965544 36799999999999999887653 4566666665321 112244
Q ss_pred cEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCCChHHHHH
Q 043190 784 DIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALANAGDLAD 863 (1492)
Q Consensus 784 ~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~~~~~~~ 863 (1492)
.+.++|.+.+...+.. ...++++++|||||+|+++ .........++... .....++++||||+++.
T Consensus 72 ~~~~~~~~~l~~~l~~---~~~~~~l~~vViDEaH~~~----~~~~~~~~~l~~~~--~~~~~~~l~~SAT~~~~----- 137 (431)
T 2v6i_A 72 IVDFMCHSTFTMKLLQ---GVRVPNYNLYIMDEAHFLD----PASVAARGYIETRV--SMGDAGAIFMTATPPGT----- 137 (431)
T ss_dssp SEEEEEHHHHHHHHHH---TCCCCCCSEEEEESTTCCS----HHHHHHHHHHHHHH--HTTSCEEEEEESSCTTC-----
T ss_pred eEEEEchHHHHHHHhc---CccccCCCEEEEeCCccCC----ccHHHHHHHHHHHh--hCCCCcEEEEeCCCCcc-----
Confidence 5667787766433332 2347899999999999763 22333344444332 13579999999999751
Q ss_pred HhcCCcceeEecCCCccccCcEEEEeccCCccccccccccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhc
Q 043190 864 WLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAAS 943 (1492)
Q Consensus 864 ~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~ 943 (1492)
+..+..... ++......++... ....+..+.. .++++||||++++.++.++..|.+.
T Consensus 138 --------~~~~~~~~~--~i~~~~~~~~~~~--------~~~~~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~~--- 194 (431)
T 2v6i_A 138 --------TEAFPPSNS--PIIDEETRIPDKA--------WNSGYEWITE--FDGRTVWFVHSIKQGAEIGTCLQKA--- 194 (431)
T ss_dssp --------CCSSCCCSS--CCEEEECCCCSSC--------CSSCCHHHHS--CSSCEEEECSSHHHHHHHHHHHHHT---
T ss_pred --------hhhhcCCCC--ceeeccccCCHHH--------HHHHHHHHHc--CCCCEEEEeCCHHHHHHHHHHHHHc---
Confidence 111111111 1111111111111 0112223333 3578999999999999998877431
Q ss_pred CCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCCCcEEE
Q 043190 944 DETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVI 1023 (1492)
Q Consensus 944 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~V 1023 (1492)
+..+..+||+ +|..+++.|++|+++|||||+++++|+|+| +..|
T Consensus 195 -------------------------------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~V 238 (431)
T 2v6i_A 195 -------------------------------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRV 238 (431)
T ss_dssp -------------------------------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEE
T ss_pred -------------------------------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEE
Confidence 5678999987 688899999999999999999999999999 5554
Q ss_pred Eecceee----eC---ccCccccCCHHHHHHhhcccCCCCCCCceEEEEEe
Q 043190 1024 IKGTEYY----DG---KTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILV 1067 (1492)
Q Consensus 1024 I~~~~~~----~~---~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~ 1067 (1492)
|.....+ +. -.....+.+.++|+||+||+||.|. ..|.++++.
T Consensus 239 I~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~-~~~~~~~~~ 288 (431)
T 2v6i_A 239 IDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPE-KLGDIYAYS 288 (431)
T ss_dssp EECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTT-CCCCEEEEC
T ss_pred EecCccccceecccceeecccccCCHHHHHHhhhccCCCCC-CCCeEEEEc
Confidence 4321111 10 0001145579999999999999862 345566665
No 59
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=3e-28 Score=310.83 Aligned_cols=323 Identities=15% Similarity=0.148 Sum_probs=189.6
Q ss_pred CCCHHHHHHHHhhhc----CCCcEEEecCCCCCchHHHHHHHHHHhccC-------CCceEEEEcccHHHHHHHH-HHHH
Q 043190 688 HFNPIQTQIFHILYH----TDNNVLLGAPTGSGKTISAELAMLHLFNTQ-------SDMKVVYIAPLKAIVRERM-NDWK 755 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~----~~~~vli~apTGsGKT~~~~l~il~~l~~~-------~~~~~l~i~P~r~La~q~~-~~~~ 755 (1492)
.|+|+|.++++.+++ +++++++++|||||||++++..+...+... .++++||++|+++|+.|.+ +.+.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999998774 457899999999999999877776666544 5789999999999999987 4433
Q ss_pred HHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcc--cCccccCcccEEEEecccccCCCCccHHHHHHH
Q 043190 756 DRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNW--HSRNYVKKVGLMILDEIHLLGAERGPILEVIVS 833 (1492)
Q Consensus 756 ~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~--~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~ 833 (1492)
.+ +..+..+.++. ...+.+|+|+||+++....+.. ........+++||+||||++....+..+..++.
T Consensus 258 ----~~-~~~~~~~~~~~-----~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~ 327 (590)
T 3h1t_A 258 ----PF-GDARHKIEGGK-----VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILE 327 (590)
T ss_dssp ----TT-CSSEEECCC-------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------CHHHHH
T ss_pred ----hc-chhhhhhhccC-----CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchHHHHHHHH
Confidence 32 45555554432 2246799999999986654321 112234678999999999886433345555554
Q ss_pred HHHHhhhccCCceEEEEEcCCCCCh--HHHHHHhcCCcceeEecCCCc---cccCcEEEEecc--C--------------
Q 043190 834 RMRYISSQTERAVRFIGLSTALANA--GDLADWLGVGEIGLFNFKPSV---RPVPLEVHIQGY--P-------------- 892 (1492)
Q Consensus 834 ~l~~~~~~~~~~~~ii~lSATl~~~--~~~~~~l~~~~~~~~~~~~~~---r~~~l~~~~~~~--~-------------- 892 (1492)
.+ ...++++||||+... .+...+++.... .+.+.... ...+........ .
T Consensus 328 ~~--------~~~~~l~lTATP~~~~~~~~~~~f~~~~~-~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (590)
T 3h1t_A 328 YF--------EPAFQIGMTATPLREDNRDTYRYFGNPIY-TYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRF 398 (590)
T ss_dssp HS--------TTSEEEEEESSCSCTTTHHHHHHSCSCSE-EECHHHHHHHTSSCCEEEEEEEETTCC-------------
T ss_pred hC--------CcceEEEeccccccccchhHHHHcCCceE-ecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccc
Confidence 33 246799999998753 345556653211 11000000 000111100000 0
Q ss_pred -----Ccccccc-c----------cccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChH
Q 043190 893 -----GKFYCPR-M----------NSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEE 956 (1492)
Q Consensus 893 -----~~~~~~~-~----------~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~ 956 (1492)
...+... . ..+...+...+....+.+++||||++++.|+.++..|.+....
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~------------- 465 (590)
T 3h1t_A 399 GREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSD------------- 465 (590)
T ss_dssp ----------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHH-------------
T ss_pred ccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhh-------------
Confidence 0000000 0 0000011112233356689999999999999999988654221
Q ss_pred HHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCce---EEEeccccccccCCCCcEEEEecceeeeCc
Q 043190 957 DLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQ---VLVCTSTLAWGVNLPAHLVIIKGTEYYDGK 1033 (1492)
Q Consensus 957 ~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~ 1033 (1492)
.....+..+..+||+++ ++|..+++.|++|+.+ |||||+++++|+|+|++++||. |++.
T Consensus 466 -------------~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~----~~~~ 527 (590)
T 3h1t_A 466 -------------LSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL----ARVV 527 (590)
T ss_dssp -------------HHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE----ESCC
T ss_pred -------------hhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE----EecC
Confidence 00111234778888875 4799999999998876 8999999999999999999997 4432
Q ss_pred cCccccCCHHHHHHhhcccCCCCCC-CceEEEEE
Q 043190 1034 TKRYVDFPITDILQMMGRAGRPQYD-QHGKAVIL 1066 (1492)
Q Consensus 1034 ~~~~~~~~~~~~~Qr~GRagR~g~~-~~G~~i~l 1066 (1492)
.+...|+||+||+||.+.+ .+..++++
T Consensus 528 ------~s~~~~~Q~iGR~~R~~~~~~k~~~~I~ 555 (590)
T 3h1t_A 528 ------NSMSEFKQIVGRGTRLREDYGKLWFNII 555 (590)
T ss_dssp ------CCHHHHHHHHTTSCCCBGGGTBSCEEEE
T ss_pred ------CChHHHHHHHhhhcccCccCCCCEEEEE
Confidence 3689999999999998743 23344444
No 60
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.93 E-value=6.9e-25 Score=290.78 Aligned_cols=329 Identities=16% Similarity=0.173 Sum_probs=210.1
Q ss_pred CCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 688 HFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
.|+|+|.+++..++.. +.+++++++||+|||.++...+...+..+...+++|++|+ +|+.|...++.+.+ |.++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f----~l~v 227 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF----NLRF 227 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS----CCCC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh----CCCE
Confidence 5999999999887743 4689999999999999998888887766556799999999 99999888876655 6677
Q ss_pred EEEcCCCCcc-----hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCc--cHHHHHHHHHHHhh
Q 043190 767 VEMTGDYTPD-----LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERG--PILEVIVSRMRYIS 839 (1492)
Q Consensus 767 ~~~~g~~~~~-----~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g--~~~~~i~~~l~~~~ 839 (1492)
..++|+.... .......+|+|+|++.+..-... .......++++||+||||++..... ......+..+.
T Consensus 228 ~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~--- 303 (968)
T 3dmq_A 228 ALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-LEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLA--- 303 (968)
T ss_dssp EECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT-THHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHH---
T ss_pred EEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHH-HHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHh---
Confidence 7776543211 12234679999999876322111 0112235789999999999854221 12222233222
Q ss_pred hccCCceEEEEEcCCCCC--hHH---HHHHhcCCcce-----------------------------------eEecC--C
Q 043190 840 SQTERAVRFIGLSTALAN--AGD---LADWLGVGEIG-----------------------------------LFNFK--P 877 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~--~~~---~~~~l~~~~~~-----------------------------------~~~~~--~ 877 (1492)
....++++||||+.. ..+ +..++...... +...- .
T Consensus 304 ---~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 304 ---EHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp ---TTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred ---hcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 124568999999842 221 11111110000 00000 0
Q ss_pred Ccccc-----------------------------CcEE-----EEeccCCccccc-------------------------
Q 043190 878 SVRPV-----------------------------PLEV-----HIQGYPGKFYCP------------------------- 898 (1492)
Q Consensus 878 ~~r~~-----------------------------~l~~-----~~~~~~~~~~~~------------------------- 898 (1492)
...+. .+.. .+.+++......
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 00000 0000 000010000000
Q ss_pred -----------------------cc-cccChhHHHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCC
Q 043190 899 -----------------------RM-NSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMP 954 (1492)
Q Consensus 899 -----------------------~~-~~~~~~~~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~ 954 (1492)
.. ...+......+....+++++||||+++..++.++..|.+
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~--------------- 525 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRE--------------- 525 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHT---------------
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHH---------------
Confidence 00 000011122222335688999999999999988877732
Q ss_pred hHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCC--ceEEEeccccccccCCCCcEEEEecceeeeC
Q 043190 955 EEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNK--IQVLVCTSTLAWGVNLPAHLVIIKGTEYYDG 1032 (1492)
Q Consensus 955 ~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~--~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~ 1032 (1492)
..+..+..+||+|+..+|..+++.|++|+ ++|||||+++++|+|+|++++||+ |++
T Consensus 526 ------------------~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~----~d~ 583 (968)
T 3dmq_A 526 ------------------REGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM----FDL 583 (968)
T ss_dssp ------------------TTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC----SSC
T ss_pred ------------------HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE----ecC
Confidence 12677999999999999999999999998 999999999999999999999997 553
Q ss_pred ccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1033 KTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1033 ~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
+.++..|.||+||+||.|......++.+.....
T Consensus 584 ------p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 584 ------PFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp ------CSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred ------CCCHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 346899999999999998544445555555443
No 61
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.92 E-value=6.4e-24 Score=265.76 Aligned_cols=321 Identities=15% Similarity=0.150 Sum_probs=203.2
Q ss_pred CCCHHHHHHHHhhh---cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHILY---HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~---~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.|+|+|.+++..+. ..+.++++++|||+|||++++..+.......+..++||++| .+|+.|..+++.+.+. +.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~---~~ 112 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAP---HL 112 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCT---TS
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCC---Cc
Confidence 59999999987653 46789999999999999998776666555445679999999 4688887777766432 45
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTER 844 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~ 844 (1492)
++..++|+... ......+|+|+||+.+..... .....+++||+||||.+.+... .....+.. . .
T Consensus 113 ~v~~~~g~~~~--~~~~~~~ivi~t~~~l~~~~~-----l~~~~~~~vIvDEaH~~kn~~~-~~~~~l~~-------l-~ 176 (500)
T 1z63_A 113 RFAVFHEDRSK--IKLEDYDIILTTYAVLLRDTR-----LKEVEWKYIVIDEAQNIKNPQT-KIFKAVKE-------L-K 176 (500)
T ss_dssp CEEECSSSTTS--CCGGGSSEEEEEHHHHTTCHH-----HHTCCEEEEEEETGGGGSCTTS-HHHHHHHT-------S-C
T ss_pred eEEEEecCchh--ccccCCcEEEeeHHHHhccch-----hcCCCcCEEEEeCccccCCHhH-HHHHHHHh-------h-c
Confidence 77777776532 233467999999998743322 1123678999999999864322 22222221 1 2
Q ss_pred ceEEEEEcCCCCC--hHHHH---HHhcCCcc-------------------------------eeEec-CCC---ccccCc
Q 043190 845 AVRFIGLSTALAN--AGDLA---DWLGVGEI-------------------------------GLFNF-KPS---VRPVPL 884 (1492)
Q Consensus 845 ~~~ii~lSATl~~--~~~~~---~~l~~~~~-------------------------------~~~~~-~~~---~r~~~l 884 (1492)
..+.+++|||+.. ..++. .|+..... .+... ... ....|-
T Consensus 177 ~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~ 256 (500)
T 1z63_A 177 SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPD 256 (500)
T ss_dssp EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCS
T ss_pred cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCC
Confidence 4577999999843 33322 22221100 00000 000 000110
Q ss_pred E--EEE-eccCCc---cccccc-------c-------------------------------------ccC-hhHHHHHhh
Q 043190 885 E--VHI-QGYPGK---FYCPRM-------N-------------------------------------SMN-KPAYAAICT 913 (1492)
Q Consensus 885 ~--~~~-~~~~~~---~~~~~~-------~-------------------------------------~~~-~~~~~~l~~ 913 (1492)
. ..+ ...... .|.... . ..+ ..+...+..
T Consensus 257 ~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~ 336 (500)
T 1z63_A 257 KIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEE 336 (500)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHH
Confidence 0 000 000000 000000 0 000 001111222
Q ss_pred -cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHH
Q 043190 914 -HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSL 992 (1492)
Q Consensus 914 -~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 992 (1492)
..++.++||||+++..+..++..|... .+..+..+||+++..+|..
T Consensus 337 ~~~~~~k~lvF~~~~~~~~~l~~~l~~~---------------------------------~~~~~~~~~g~~~~~~R~~ 383 (500)
T 1z63_A 337 ALDEGDKIAIFTQFVDMGKIIRNIIEKE---------------------------------LNTEVPFLYGELSKKERDD 383 (500)
T ss_dssp HHTTTCCEEEECSCHHHHHHHHHHHHHH---------------------------------HTCCCCEEETTSCHHHHHH
T ss_pred HHccCCcEEEEEehHHHHHHHHHHHHHh---------------------------------hCCCeEEEECCCCHHHHHH
Confidence 246789999999999888877666331 2567889999999999999
Q ss_pred HHHHHhcC-Cce-EEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 993 VEELFANN-KIQ-VLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 993 v~~~f~~g-~~~-vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
+++.|++| ..+ +|+||+++++|+|+|++++||. |++ +.++..+.||+||++|.|..+...++.++..+
T Consensus 384 ~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~----~d~------~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv~~~ 453 (500)
T 1z63_A 384 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 453 (500)
T ss_dssp HHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE----SSC------CSCC---CHHHHTTTTTTTTSCEEEEEEEETT
T ss_pred HHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE----eCC------CCCcchHHHHHHHHHHcCCCCeeEEEEEEeCC
Confidence 99999998 555 7999999999999999999997 443 23577899999999999987777778787766
Q ss_pred c
Q 043190 1071 K 1071 (1492)
Q Consensus 1071 ~ 1071 (1492)
.
T Consensus 454 t 454 (500)
T 1z63_A 454 T 454 (500)
T ss_dssp S
T ss_pred C
Confidence 4
No 62
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.4e-24 Score=281.87 Aligned_cols=249 Identities=26% Similarity=0.376 Sum_probs=174.8
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEee---------CCc------hhHHHHHhh-
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGIS---------EPN------FAARNELLS- 67 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~---------~~~------~~~~~~~~~- 67 (1492)
.+.++|+|+||||+||..++++|++......+.++..++||+|+.++++... ... +......+.
T Consensus 220 l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 220 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred cCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 3568999999999999999999997432334666778899999987765321 000 000000000
Q ss_pred ----------------------------HHHHHHHHHHH--hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCC
Q 043190 68 ----------------------------EICYKKVVDSL--RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNND 117 (1492)
Q Consensus 68 ----------------------------~~~~~~~~~~~--~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~ 117 (1492)
......+.+.+ .++.++||||+||+.|+.+++.|.... + .
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~--------~--~ 369 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLD--------F--N 369 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSC--------C--C
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC--------C--C
Confidence 01111233332 234599999999999999998875310 0 0
Q ss_pred CchhhHHHH----HHHhhc--------CchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCC
Q 043190 118 THPQLSLIK----KDVMKS--------RNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLP 185 (1492)
Q Consensus 118 ~~~~~~~~~----~~~~~~--------~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp 185 (1492)
...+...+. +..... ....+..++..||++|||||++.+|..+++.|++|.++|||||+++++|||+|
T Consensus 370 ~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP 449 (1010)
T 2xgj_A 370 SDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMP 449 (1010)
T ss_dssp CHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCC
T ss_pred ChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCC
Confidence 001111111 111100 12457788899999999999999999999999999999999999999999999
Q ss_pred cEEEEEeccceecCCCC-CcccCchhhhhhccCCCCCCccceEEEEeCCc-cHHHHHHHh-cCCCccccchhHhHHHHHH
Q 043190 186 AHTVVIKGTQLYDPKAG-GWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD-KLAYYLRLL-TSQLPIESQFISSLKDNLN 262 (1492)
Q Consensus 186 ~~~vVI~~~~~~~~~~~-~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~-~~~~~~~~~-~~~~~ies~l~~~l~~~l~ 262 (1492)
+++|||++...||+... +++..+|.||+|||||.|.|..|.||+++++. +...+.+++ +...|++|.+.......+|
T Consensus 450 ~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~~~~iln 529 (1010)
T 2xgj_A 450 AKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILN 529 (1010)
T ss_dssp BSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCCHHHHHH
T ss_pred CceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCcHHHHHH
Confidence 99999999988986432 45677899999999999999899999999865 455555554 4456899998765444444
No 63
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.91 E-value=1.9e-24 Score=278.60 Aligned_cols=306 Identities=16% Similarity=0.211 Sum_probs=210.9
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH--hcCCc
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL--RQGHQ 83 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 83 (1492)
++.|+|+||||+ |.+++++|++..+ ++....|+.|++.+|.......+.. .....+.+.. ..+++
T Consensus 239 ~~~~iIl~SAT~-~~~~l~~~~~~~~-----vi~v~gr~~pv~~~~~~~~~~~~~~-------~~l~~l~~~~~~~~~g~ 305 (773)
T 2xau_A 239 PDLKIIIMSATL-DAEKFQRYFNDAP-----LLAVPGRTYPVELYYTPEFQRDYLD-------SAIRTVLQIHATEEAGD 305 (773)
T ss_dssp TTCEEEEEESCS-CCHHHHHHTTSCC-----EEECCCCCCCEEEECCSSCCSCHHH-------HHHHHHHHHHHHSCSCE
T ss_pred CCceEEEEeccc-cHHHHHHHhcCCC-----cccccCcccceEEEEecCCchhHHH-------HHHHHHHHHHHhcCCCC
Confidence 468999999999 7889999997542 3455677788877665444332211 1112222222 35789
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+||||+++++++.+++.|.+..... ... .......+..|||+|++++|..+++.
T Consensus 306 iLVF~~~~~~i~~l~~~L~~~~~~l-----------------~~~---------~~~~~~~v~~lhg~l~~~eR~~v~~~ 359 (773)
T 2xau_A 306 ILLFLTGEDEIEDAVRKISLEGDQL-----------------VRE---------EGCGPLSVYPLYGSLPPHQQQRIFEP 359 (773)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHHHH-----------------HHH---------HCCCCEEEEEECTTCCHHHHGGGGSC
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhh-----------------ccc---------ccCCCeEEEEeCCCCCHHHHHHHHhh
Confidence 9999999999999999987643210 000 00013358999999999999999999
Q ss_pred Hh-----CCCccEEEeccccccccCCCcEEEEEec----cceecCCCC-------CcccCchhhhhhccCCCCCCccceE
Q 043190 164 FS-----EGLLKVLVCTATLAWGVNLPAHTVVIKG----TQLYDPKAG-------GWRDLGMLDIFGRAGRPQFDRSGEG 227 (1492)
Q Consensus 164 f~-----~g~i~vlvaT~tla~Gvnlp~~~vVI~~----~~~~~~~~~-------~~~~~~~~~~~GRAGR~~~d~~G~~ 227 (1492)
|+ +|.++|||||+++++|||+|++++||+. ...||+..| +.+..+|.||+|||||. ..|.|
T Consensus 360 f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~ 436 (773)
T 2xau_A 360 APESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKC 436 (773)
T ss_dssp CCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEE
T ss_pred cccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEE
Confidence 99 9999999999999999999999999983 456888766 44667799999999998 47999
Q ss_pred EEEeCCccHHHHHHHhcCCCccccchhHhHHHHHHHHHHhCcccCHHHHHHHhhhhhhhhhhccCccccCCCcccccCCc
Q 043190 228 IIITSHDKLAYYLRLLTSQLPIESQFISSLKDNLNAEVALGTVTNVKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADP 307 (1492)
Q Consensus 228 i~~~~~~~~~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~~i~~~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~ 307 (1492)
+.+++..+... .+... +...-+...|...++...++|. .+..+ | .+.. .|
T Consensus 437 ~~l~~~~~~~~--~l~~~--~~pEi~r~~L~~~~L~l~~~gi-~~~~~--------f---~~~~--------------~p 486 (773)
T 2xau_A 437 FRLYTEEAFQK--ELIEQ--SYPEILRSNLSSTVLELKKLGI-DDLVH--------F---DFMD--------------PP 486 (773)
T ss_dssp EESSCHHHHHH--TSCSS--CCCGGGGSCCHHHHHHHHHTTC-CCGGG--------C---CCSS--------------CC
T ss_pred EEEecHHHhcc--ccccc--CCCccccCcHHHHHHHHHHcCC-CChhh--------c---cccC--------------CC
Confidence 99997554321 12221 2222334455555555555442 11110 1 0111 11
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCC
Q 043190 308 SLSLKQRALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENI 387 (1492)
Q Consensus 308 ~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i 387 (1492)
..+.+..+++.|.+.|+|+.+ + .+|++|+.||.+|++|..++++......+ +...++.++|... +.++
T Consensus 487 -----~~~~i~~a~~~L~~lgald~~---~--~lT~lG~~~a~~pl~p~~~~~l~~~~~~~-c~~~~l~i~a~ls-~~~~ 554 (773)
T 2xau_A 487 -----APETMMRALEELNYLACLDDE---G--NLTPLGRLASQFPLDPMLAVMLIGSFEFQ-CSQEILTIVAMLS-VPNV 554 (773)
T ss_dssp -----CHHHHHHHHHHHHHTTSBCTT---S--CBCHHHHHHTTSSSCHHHHHHHHHGGGGT-CHHHHHHHHHHHT-SCCC
T ss_pred -----cHHHHHHHHHHHHHcCCcccC---C--CcChhhhhhccccCCHHHHHHHHhhcccC-chhHHHHHHHhcc-cCCc
Confidence 146788999999999999633 3 59999999999999999999999865544 5667777776655 4566
Q ss_pred ccchhHHH
Q 043190 388 VVRDEEQN 395 (1492)
Q Consensus 388 ~~R~~e~~ 395 (1492)
.+++.+..
T Consensus 555 f~~~~~~~ 562 (773)
T 2xau_A 555 FIRPTKDK 562 (773)
T ss_dssp BCCCTTCH
T ss_pred ccCChHHH
Confidence 66655433
No 64
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.9e-24 Score=244.51 Aligned_cols=179 Identities=19% Similarity=0.233 Sum_probs=139.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-----CCCceEEEEcccHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-----QSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-----~~~~~~l~i~P~r~La 747 (1492)
+..+..+.+. ||..|+|+|.++++.++ .+++++++||||||||++|++|+++.+.. ..+.+++|++|+++||
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La 139 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLL-EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELA 139 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHH-HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHH
Confidence 3334444433 99999999999999998 57899999999999999999999987754 2367899999999999
Q ss_pred HHHHHHHHHHhhhccCCEEEEEcCCCCcchhc---cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-C
Q 043190 748 RERMNDWKDRLVSQLGKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E 823 (1492)
Q Consensus 748 ~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~ 823 (1492)
.|+++.+++.+... +..+..++|+....... ..+++|+|+||+++...+++.. ...+++++++|+||||++.+ .
T Consensus 140 ~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~-~~~~~~l~~lViDEah~l~~~~ 217 (262)
T 3ly5_A 140 MQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTP-GFMYKNLQCLVIDEADRILDVG 217 (262)
T ss_dssp HHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCT-TCCCTTCCEEEECSHHHHHHTT
T ss_pred HHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccC-CcccccCCEEEEcChHHHhhhh
Confidence 99999998865544 88888999877644322 2468999999999988776632 23478899999999998754 4
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHH
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLAD 863 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~ 863 (1492)
++..++.++.. .+...|++++|||+++ .+++++
T Consensus 218 ~~~~l~~i~~~-------~~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 218 FEEELKQIIKL-------LPTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp CHHHHHHHHHH-------SCSSSEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHHHHh-------CCCCCeEEEEEecCCHHHHHHHH
Confidence 66666655543 3457899999999986 344444
No 65
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.90 E-value=2.1e-22 Score=242.77 Aligned_cols=348 Identities=16% Similarity=0.167 Sum_probs=221.2
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
|+. ++++|....-.+. .|+ |..+.||+|||+++.+|++-.... +..+.+++|+..||.|-++.+.. +...+|+
T Consensus 73 g~r-~~dvQligg~~L~-~G~--iaEM~TGEGKTLva~lp~~lnAL~--G~~vhVvT~ndyLA~rdae~m~~-l~~~Lgl 145 (822)
T 3jux_A 73 GMR-PFDVQVMGGIALH-EGK--VAEMKTGEGKTLAATMPIYLNALI--GKGVHLVTVNDYLARRDALWMGP-VYLFLGL 145 (822)
T ss_dssp SCC-CCHHHHHHHHHHH-TTC--EEECCTTSCHHHHTHHHHHHHHTT--SSCEEEEESSHHHHHHHHHHHHH-HHHHTTC
T ss_pred CCC-CcHHHHHHHHHHh-CCC--hhhccCCCCccHHHHHHHHHHHhc--CCceEEEeccHHHHHhHHHHHHH-HHHHhCC
Confidence 665 7888888777664 554 889999999999999998754333 78899999999999998887766 5556699
Q ss_pred EEEEEcCC--------------------------------------------------CCcc-hhccCCCcEEEECchhh
Q 043190 765 EMVEMTGD--------------------------------------------------YTPD-LMALLSADIIISTPEKW 793 (1492)
Q Consensus 765 ~v~~~~g~--------------------------------------------------~~~~-~~~~~~~~Iiv~Tpe~l 793 (1492)
+|+++..+ .+.. .+..-.+||.++|...|
T Consensus 146 svg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY~~DItYgTn~Ef 225 (822)
T 3jux_A 146 RVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNNEF 225 (822)
T ss_dssp CEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHHHSSEEEEEHHHH
T ss_pred EEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHhcCCCEEccCcch
Confidence 99988772 1111 11112579999999875
Q ss_pred --hHhhhccc---CccccCcccEEEEeccccc--CCCCccHH--------HHHHHHHHHhhhcc----------------
Q 043190 794 --DGISRNWH---SRNYVKKVGLMILDEIHLL--GAERGPIL--------EVIVSRMRYISSQT---------------- 842 (1492)
Q Consensus 794 --~~l~~~~~---~~~~l~~i~liViDEaH~l--~~~~g~~~--------~~i~~~l~~~~~~~---------------- 842 (1492)
+.|-.+.. .....+.+.+.||||+|.+ ++.+.|.+ ..+..++..+...+
T Consensus 226 gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~~v~ 305 (822)
T 3jux_A 226 GFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKARTII 305 (822)
T ss_dssp HHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSSCEE
T ss_pred hhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccCeEE
Confidence 44443321 2334567899999999943 22221110 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q 043190 843 -------------------------------------------------------------------------------- 842 (1492)
Q Consensus 843 -------------------------------------------------------------------------------- 842 (1492)
T Consensus 306 lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaK 385 (822)
T 3jux_A 306 LTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIEAK 385 (822)
T ss_dssp ECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHHHHH
Confidence
Q ss_pred ---------------------CCceEEEEEcCCCCC-hHHHHHHhcCCcceeEecCCCccccCcEEEEeccCCccccccc
Q 043190 843 ---------------------ERAVRFIGLSTALAN-AGDLADWLGVGEIGLFNFKPSVRPVPLEVHIQGYPGKFYCPRM 900 (1492)
Q Consensus 843 ---------------------~~~~~ii~lSATl~~-~~~~~~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~ 900 (1492)
..-.++.|||+|... .+++.+..+.. ++.. |..+|..-... +...+...
T Consensus 386 Egv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~---vv~I-Ptnkp~~R~d~----~d~vy~t~- 456 (822)
T 3jux_A 386 EGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME---VVVI-PTHKPMIRKDH----DDLVFRTQ- 456 (822)
T ss_dssp HSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC---EEEC-CCSSCCCCEEC----CCEEESSH-
T ss_pred cCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe---EEEE-CCCCCcceeec----CcEEEecH-
Confidence 001458888888865 34455555443 2222 23333211110 11111111
Q ss_pred cccChhHHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceE
Q 043190 901 NSMNKPAYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIG 979 (1492)
Q Consensus 901 ~~~~~~~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~ 979 (1492)
......+...+.. +..+.|+||||+|+..++.++..|.+ .+..+.
T Consensus 457 ~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~----------------------------------~Gi~~~ 502 (822)
T 3jux_A 457 KEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKK----------------------------------KGIPHQ 502 (822)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHT----------------------------------TTCCCE
T ss_pred HHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHH----------------------------------CCCCEE
Confidence 1111122333332 24578999999999999999987743 256788
Q ss_pred eecCCCCHHHHHHHHHHHhcCCceEEEeccccccccCCC--------CcEEEEecceeeeCccCccccCCHHHHHHhhcc
Q 043190 980 LHHAGLNDKDRSLVEELFANNKIQVLVCTSTLAWGVNLP--------AHLVIIKGTEYYDGKTKRYVDFPITDILQMMGR 1051 (1492)
Q Consensus 980 ~~h~~l~~~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip--------~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GR 1051 (1492)
.+||+....+|..+.++++.| .|+|||++++||+|++ +..+||+ |+ .+-+...|.||+||
T Consensus 503 vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn----te------~Pes~r~y~qriGR 570 (822)
T 3jux_A 503 VLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG----TE------RHESRRIDNQLRGR 570 (822)
T ss_dssp EECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE----SS------CCSSHHHHHHHHTT
T ss_pred EeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe----cC------CCCCHHHHHHhhCc
Confidence 999998777777778888777 5999999999999998 6679997 32 22358899999999
Q ss_pred cCCCCCCCceEEEEEecCCcHH-------HHHHhh-----cCCCceeecccccchhh
Q 043190 1052 AGRPQYDQHGKAVILVHEPKKS-------FYKKFL-----YEPFPVESSLRDQLHDH 1096 (1492)
Q Consensus 1052 agR~g~~~~G~~i~l~~~~~~~-------~~~~~l-----~~~~pies~l~~~l~~~ 1096 (1492)
+||.| .+|.++.+++..+.- .+.+++ .+..|+++.+.....+.
T Consensus 571 TGRqG--~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~~~~i~~~~v~~~ie~ 625 (822)
T 3jux_A 571 AGRQG--DPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIEN 625 (822)
T ss_dssp SSCSS--CCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCSSSCBCCHHHHHHHHH
T ss_pred cccCC--CCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCCCceeccHHHHHHHHH
Confidence 99998 899999999877631 222222 34567777766554443
No 66
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.90 E-value=9.7e-24 Score=281.05 Aligned_cols=273 Identities=25% Similarity=0.370 Sum_probs=185.1
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeC---------Cc-h-----hHHHHHh--
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISE---------PN-F-----AARNELL-- 66 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~---------~~-~-----~~~~~~~-- 66 (1492)
.++++|+|+||||+||..++++|++......+.++..++||+|+..+++.... .. + ......+
T Consensus 318 l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~ 397 (1108)
T 3l9o_A 318 LPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 397 (1108)
T ss_dssp SCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--
T ss_pred cCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHh
Confidence 46789999999999999999999986545567778889999999776543211 00 0 0000000
Q ss_pred ----------------------------hHHHHHHHHHHH--hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCc-----
Q 043190 67 ----------------------------SEICYKKVVDSL--RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDL----- 111 (1492)
Q Consensus 67 ----------------------------~~~~~~~~~~~~--~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~----- 111 (1492)
....+ .++..+ .+++++||||+|++.|+.++..|..........
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 476 (1108)
T 3l9o_A 398 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIY-KIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALT 476 (1108)
T ss_dssp ---------------------------CHHHHH-HHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHH
T ss_pred hhcccccccccccccccccccccccccchhHHH-HHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 11112 222222 345699999999999999999886543321110
Q ss_pred cccCCCCchhhHHHHHHHh-hcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEE
Q 043190 112 EVFNNDTHPQLSLIKKDVM-KSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVV 190 (1492)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vV 190 (1492)
..+... ...+..... ......+..++..||++|||||++.+|..+++.|++|.++|||||+++++|||+|++++|
T Consensus 477 ~~~~~~----~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~V 552 (1108)
T 3l9o_A 477 KIFNNA----IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVV 552 (1108)
T ss_dssp HHGGGS----CTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEE
T ss_pred HHHHHH----HhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEE
Confidence 000000 001111100 011245778889999999999999999999999999999999999999999999999999
Q ss_pred EeccceecCCCC-CcccCchhhhhhccCCCCCCccceEEEEeCCcc-HHHHHHHhc-CCCccccchhHhHHHHHHHHHHh
Q 043190 191 IKGTQLYDPKAG-GWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK-LAYYLRLLT-SQLPIESQFISSLKDNLNAEVAL 267 (1492)
Q Consensus 191 I~~~~~~~~~~~-~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~-~~~~~~~~~-~~~~ies~l~~~l~~~l~~ei~~ 267 (1492)
|++..+|++... +.+..+|+||+|||||.|.|..|.|++++++.. ...+.+++. .+.|+.|++.......+|. +..
T Consensus 553 I~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~~~L~S~f~~~y~~ilnl-l~~ 631 (1108)
T 3l9o_A 553 FTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNL-MRV 631 (1108)
T ss_dssp ESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHH-HHS
T ss_pred EecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCCcccccccCCcHHHHHHH-HHh
Confidence 999888987642 235567999999999999999999999998763 444555554 4578999987755544443 344
Q ss_pred CcccCHHHHHHHhhhhhhh
Q 043190 268 GTVTNVKEACAWLGYTYLS 286 (1492)
Q Consensus 268 ~~i~~~~~~~~~~~~t~~~ 286 (1492)
+.+ +. .+++..+|.-
T Consensus 632 ~~~-~~---~~~l~~sf~~ 646 (1108)
T 3l9o_A 632 EGI-SP---EFMLEHSFFQ 646 (1108)
T ss_dssp TTC-CH---HHHHHHSSHH
T ss_pred cCC-CH---HHHHHHHHHH
Confidence 433 22 4555666643
No 67
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.89 E-value=1.2e-22 Score=233.91 Aligned_cols=185 Identities=17% Similarity=0.198 Sum_probs=140.0
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRER 750 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~ 750 (1492)
|+....+.+. ||..|+|+|.++++.++.+ ++|++++||||||||++|++|++..+... .+.++||++|||+||.|+
T Consensus 99 l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~ 178 (300)
T 3fmo_B 99 LKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQT 178 (300)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHH
Confidence 4455555554 9999999999999999843 48999999999999999999999987653 345899999999999999
Q ss_pred HHHHHHHhhhccCCEEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHH
Q 043190 751 MNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEV 830 (1492)
Q Consensus 751 ~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~ 830 (1492)
++.+........+..+....|+..........++|+|+||+++..++.+. ....+++++++||||||.+.+..| +..
T Consensus 179 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~-~~~~l~~l~~lVlDEad~l~~~~~--~~~ 255 (300)
T 3fmo_B 179 GKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-KFIDPKKIKVFVLDEADVMIATQG--HQD 255 (300)
T ss_dssp HHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-CCCCGGGCSEEEETTHHHHHHSTT--HHH
T ss_pred HHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-CCCChhhceEEEEeCHHHHhhccC--cHH
Confidence 99988754444467888888877655555567899999999998877642 223478999999999998754222 222
Q ss_pred HHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 831 IVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 831 i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
.+.+ +....+...|++++|||+++ ...++..+
T Consensus 256 ~~~~---i~~~~~~~~q~i~~SAT~~~~v~~~a~~~ 288 (300)
T 3fmo_B 256 QSIR---IQRMLPRNCQMLLFSATFEDSVWKFAQKV 288 (300)
T ss_dssp HHHH---HHTTSCTTCEEEEEESCCCHHHHHHHHHH
T ss_pred HHHH---HHHhCCCCCEEEEEeccCCHHHHHHHHHH
Confidence 2222 22334568999999999987 34455444
No 68
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.89 E-value=8.6e-23 Score=228.68 Aligned_cols=179 Identities=18% Similarity=0.189 Sum_probs=139.0
Q ss_pred CchhHhhh--cCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc------CCCceEEEEcccHHHH
Q 043190 676 GNNIYEAL--YNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT------QSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 676 ~~~~~~~~--~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~------~~~~~~l~i~P~r~La 747 (1492)
+....+.+ +||..|+|+|.++++.++ .+++++++||||||||++|++|++..+.. ..+++++|++|+++|+
T Consensus 37 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~ 115 (242)
T 3fe2_A 37 PANVMDVIARQNFTEPTAIQAQGWPVAL-SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELA 115 (242)
T ss_dssp CHHHHHHHHTTTCCSCCHHHHHHHHHHH-HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHH
Confidence 33444443 389999999999999998 67899999999999999999999988764 2467899999999999
Q ss_pred HHHHHHHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-C
Q 043190 748 RERMNDWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-E 823 (1492)
Q Consensus 748 ~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~ 823 (1492)
.|+++.+.+.... .+.++..++|+...... ...+++|+|+||+++..++.+. ...+++++++|+||||++.+ .
T Consensus 116 ~Q~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~l~~~~ 192 (242)
T 3fe2_A 116 QQVQQVAAEYCRA-CRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECG--KTNLRRTTYLVLDEADRMLDMG 192 (242)
T ss_dssp HHHHHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHT--SCCCTTCCEEEETTHHHHHHTT
T ss_pred HHHHHHHHHHHhh-cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC--CCCcccccEEEEeCHHHHhhhC
Confidence 9999998875444 48899999988765432 2236899999999998887753 33578999999999998753 4
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
++..++.++.+ .+...|++++|||+++ ...++..+
T Consensus 193 ~~~~~~~i~~~-------~~~~~q~~~~SAT~~~~~~~~~~~~ 228 (242)
T 3fe2_A 193 FEPQIRKIVDQ-------IRPDRQTLMWSATWPKEVRQLAEDF 228 (242)
T ss_dssp CHHHHHHHHTT-------SCSSCEEEEEESCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHh-------CCccceEEEEEeecCHHHHHHHHHH
Confidence 55555555433 3467899999999986 34444433
No 69
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.88 E-value=7.8e-22 Score=258.08 Aligned_cols=351 Identities=14% Similarity=0.186 Sum_probs=195.2
Q ss_pred CCCHHHHHHHHhhhc-------------CCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYH-------------TDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMND 753 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~-------------~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~ 753 (1492)
.|+|+|.+|++.++. .+++.++.++||||||+++ +++++.+... ...++||++|+++|+.|..+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998764 1368999999999999998 5566665532 246999999999999999888
Q ss_pred HHHHhhhccCCEEEEEcCCCCc-ch-hc--cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHH
Q 043190 754 WKDRLVSQLGKEMVEMTGDYTP-DL-MA--LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILE 829 (1492)
Q Consensus 754 ~~~~~~~~~g~~v~~~~g~~~~-~~-~~--~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~ 829 (1492)
+.. +... . +.|.... .. .. ..+.+|+|+||+++..++........++...+||+||||+... +..
T Consensus 350 f~~-f~~~---~---v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--~~~-- 418 (1038)
T 2w00_A 350 YQR-FSPD---S---VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--GEA-- 418 (1038)
T ss_dssp HHT-TSTT---C---SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH--HHH--
T ss_pred HHH-hccc---c---cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc--hHH--
Confidence 765 3221 1 1222111 11 11 2468999999999987765422122355778999999997631 212
Q ss_pred HHHHHHHHhhhccCCceEEEEEcCCCCChH------HHHHHhcCCcceeEecCC---CccccCcEEEEeccCCcc-----
Q 043190 830 VIVSRMRYISSQTERAVRFIGLSTALANAG------DLADWLGVGEIGLFNFKP---SVRPVPLEVHIQGYPGKF----- 895 (1492)
Q Consensus 830 ~i~~~l~~~~~~~~~~~~ii~lSATl~~~~------~~~~~l~~~~~~~~~~~~---~~r~~~l~~~~~~~~~~~----- 895 (1492)
...+... . ++.+++|+|||+.... ....++|..- ..+.+.. ..--.|+.+.........
T Consensus 419 --~~~I~~~---~-p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i-~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~ 491 (1038)
T 2w00_A 419 --QKNLKKK---F-KRYYQFGFTGTPIFPENALGSETTASVFGREL-HSYVITDAIRDEKVLKFKVDYNDVRPQFKSLET 491 (1038)
T ss_dssp --HHHHHHH---C-SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEE-EEECHHHHHHHTSSCCEEEEECCCCGGGHHHHT
T ss_pred --HHHHHHh---C-CcccEEEEeCCccccccchhhhHHHHHhCCee-EeecHHHHHhCCCcCCeEEEEEeccchhhhccc
Confidence 2222221 2 3579999999987532 3445555321 1111000 000112222221110000
Q ss_pred ------cc--ccccc-cC----hhHHHHHhh----c-------CCCCCeeEEecChHHHHHHHHHHHHHHhcC-----C-
Q 043190 896 ------YC--PRMNS-MN----KPAYAAICT----H-------SPTKPVLIFVSSRRQTRLTALDLIQFAASD-----E- 945 (1492)
Q Consensus 896 ------~~--~~~~~-~~----~~~~~~l~~----~-------~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~-----~- 945 (1492)
+. ..... .. ......+.. . ..+.++||||+|+..|..++..|.+..... .
T Consensus 492 e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~ 571 (1038)
T 2w00_A 492 ETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATY 571 (1038)
T ss_dssp CCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSC
T ss_pred cccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccc
Confidence 00 00000 00 011111211 1 134579999999999999999887764210 0
Q ss_pred C-Cc--ccCCCChHHHHHHHhhcC---------c----HHHHHHh-----ccceEeecC-CCCHHHHHHHHHHHhcCCce
Q 043190 946 T-PR--QFLGMPEEDLQMVLSQVT---------D----QNLRQTL-----QFGIGLHHA-GLNDKDRSLVEELFANNKIQ 1003 (1492)
Q Consensus 946 ~-~~--~~~~~~~~~~~~~~~~~~---------~----~~l~~~~-----~~~v~~~h~-~l~~~~R~~v~~~f~~g~~~ 1003 (1492)
. .. ........+-......+. + +.+...+ -++-.+.+. +-...+|..+.+.|++|+++
T Consensus 572 ~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ 651 (1038)
T 2w00_A 572 KPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDID 651 (1038)
T ss_dssp CCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSS
T ss_pred ccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCe
Confidence 0 00 000000000000000000 0 0000000 000000000 00123588999999999999
Q ss_pred EEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCC--CceEEEEEec
Q 043190 1004 VLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYD--QHGKAVILVH 1068 (1492)
Q Consensus 1004 vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~--~~G~~i~l~~ 1068 (1492)
|||+|+++.+|+|+|.+.+++ +|. ++....|+||+||+||.+.+ ..|.++-+..
T Consensus 652 ILIvvd~lltGfDiP~l~tly-----lDk------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 652 LLIVVGMFLTGFDAPTLNTLF-----VDK------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp EEEESSTTSSSCCCTTEEEEE-----EES------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred EEEEcchHHhCcCcccccEEE-----Ecc------CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 999999999999999997654 342 34567899999999998743 2366665554
No 70
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=223.45 Aligned_cols=174 Identities=18% Similarity=0.261 Sum_probs=131.6
Q ss_pred hhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-------CCceEEEEcccHHHHH
Q 043190 678 NIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-------SDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 678 ~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-------~~~~~l~i~P~r~La~ 748 (1492)
+..+.+. ||..|+|+|.++++.++ .+++++++||||||||++|++|++..+... .+.+++|++|+++|+.
T Consensus 30 ~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~ 108 (228)
T 3iuy_A 30 DLLKSIIRVGILKPTPIQSQAWPIIL-QGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELAL 108 (228)
T ss_dssp HHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHH
Confidence 3444433 99999999999999998 789999999999999999999999877532 4788999999999999
Q ss_pred HHHHHHHHHhhhccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CC
Q 043190 749 ERMNDWKDRLVSQLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ER 824 (1492)
Q Consensus 749 q~~~~~~~~~~~~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~ 824 (1492)
|+++.+.+. ... +.++..+.|+..... ....+++|+|+||+++..++.+. ...+++++++|+||||++.+ ++
T Consensus 109 q~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~--~~~~~~~~~lViDEah~~~~~~~ 184 (228)
T 3iuy_A 109 HVEAECSKY-SYK-GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNN--SVNLRSITYLVIDEADKMLDMEF 184 (228)
T ss_dssp HHHHHHHHH-CCT-TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTT--CCCCTTCCEEEECCHHHHHHTTC
T ss_pred HHHHHHHHh-ccc-CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcC--CcCcccceEEEEECHHHHhccch
Confidence 999998874 333 778888888765432 22356899999999998877653 33478999999999998753 45
Q ss_pred ccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHH
Q 043190 825 GPILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLAD 863 (1492)
Q Consensus 825 g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~ 863 (1492)
+..+..++.. ...+.|++++|||+++ ..+++.
T Consensus 185 ~~~~~~i~~~-------~~~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 185 EPQIRKILLD-------VRPDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp HHHHHHHHHH-------SCSSCEEEEEESCCCHHHHHHHH
T ss_pred HHHHHHHHHh-------CCcCCeEEEEEeeCCHHHHHHHH
Confidence 5566655443 3457899999999986 234443
No 71
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.88 E-value=1.2e-22 Score=268.26 Aligned_cols=244 Identities=26% Similarity=0.381 Sum_probs=173.5
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEe-------eCC-ch-----hHHHHH-----
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGI-------SEP-NF-----AARNEL----- 65 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~-------~~~-~~-----~~~~~~----- 65 (1492)
.++++|+|+||||+||..++++|++......++++...+||+|+.+++... ... .+ ......
T Consensus 175 l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (997)
T 4a4z_A 175 LPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGES 254 (997)
T ss_dssp SCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---
T ss_pred cccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccc
Confidence 356899999999999999999999865456788899999999998766421 000 00 000000
Q ss_pred ----------------------------------------------------------------hhHHHHHHHHHHHh--
Q 043190 66 ----------------------------------------------------------------LSEICYKKVVDSLR-- 79 (1492)
Q Consensus 66 ----------------------------------------------------------------~~~~~~~~~~~~~~-- 79 (1492)
..+..+..+.+.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~ 334 (997)
T 4a4z_A 255 AKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR 334 (997)
T ss_dssp --------------------------------------------------------------CCCCTTHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC
Confidence 00111233444443
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHH----HHh--------hcCchHHHHHhcccEEE
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKK----DVM--------KSRNKDLIELFGLAVGV 147 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--------~~~~~~l~~~~~~gv~~ 147 (1492)
+..++||||+||++|+.++..|.+... ....+...+.. ... ......+..++..||++
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~----------~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~ 404 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINF----------CNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAV 404 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCC----------CCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCC----------CCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeee
Confidence 346999999999999999988753110 00011111111 111 11134578889999999
Q ss_pred EcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC-CcccCchhhhhhccCCCCCCccce
Q 043190 148 HHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG-GWRDLGMLDIFGRAGRPQFDRSGE 226 (1492)
Q Consensus 148 hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~-~~~~~~~~~~~GRAGR~~~d~~G~ 226 (1492)
|||||++.+|..+++.|++|.++|||||+++++|||+|+++||+.+...||+... +.+..+|.||+|||||.|.|..|.
T Consensus 405 ~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~ 484 (997)
T 4a4z_A 405 HHGGLLPIVKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGT 484 (997)
T ss_dssp ECTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEE
T ss_pred ecCCCCHHHHHHHHHHHHCCCCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceE
Confidence 9999999999999999999999999999999999999999999998888886432 235567999999999999999999
Q ss_pred EEEEeC--CccHHHHHHHh-cCCCccccchhHhH
Q 043190 227 GIIITS--HDKLAYYLRLL-TSQLPIESQFISSL 257 (1492)
Q Consensus 227 ~i~~~~--~~~~~~~~~~~-~~~~~ies~l~~~l 257 (1492)
+++++. ..+...+.+++ +.+.++.|++....
T Consensus 485 vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~y 518 (997)
T 4a4z_A 485 VIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTY 518 (997)
T ss_dssp EEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCH
T ss_pred EEEecCCCcchHHHHHHHhcCCCcccccccccch
Confidence 999994 33444555443 45668888775543
No 72
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.87 E-value=4.7e-22 Score=223.44 Aligned_cols=178 Identities=18% Similarity=0.247 Sum_probs=134.5
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRER 750 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~ 750 (1492)
+.....+.+. ||..|+|+|.++++.++ .+++++++||||||||++|++|++..+... .+.+++|++|+++|+.|+
T Consensus 36 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~ 114 (245)
T 3dkp_A 36 INSRLLQNILDAGFQMPTPIQMQAIPVML-HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQI 114 (245)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHH
Confidence 3444444444 99999999999999998 688999999999999999999999988642 456899999999999999
Q ss_pred HHHHHHHhhhccCCEEEEEcCCCCcc----hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCc
Q 043190 751 MNDWKDRLVSQLGKEMVEMTGDYTPD----LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERG 825 (1492)
Q Consensus 751 ~~~~~~~~~~~~g~~v~~~~g~~~~~----~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g 825 (1492)
++++.+.+... +.++..++|+.... .....+++|+|+||+++..++++......+++++++|+||||++.+ .+.
T Consensus 115 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~ 193 (245)
T 3dkp_A 115 HRELIKISEGT-GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKT 193 (245)
T ss_dssp HHHHHHHTTTS-CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--
T ss_pred HHHHHHHhccc-CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccc
Confidence 99998855443 77777776643211 1223467999999999988887754445688999999999998854 223
Q ss_pred cHHHHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 826 PILEVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 826 ~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
...+.+...++.. ...+.|++++|||+++
T Consensus 194 ~~~~~~~~i~~~~---~~~~~~~~~~SAT~~~ 222 (245)
T 3dkp_A 194 GFRDQLASIFLAC---TSHKVRRAMFSATFAY 222 (245)
T ss_dssp CHHHHHHHHHHHC---CCTTCEEEEEESSCCH
T ss_pred cHHHHHHHHHHhc---CCCCcEEEEEeccCCH
Confidence 3344444333322 2457899999999975
No 73
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.87 E-value=1.3e-21 Score=213.64 Aligned_cols=172 Identities=16% Similarity=0.228 Sum_probs=133.9
Q ss_pred CchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHH
Q 043190 676 GNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMN 752 (1492)
Q Consensus 676 ~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~ 752 (1492)
++...+.+. ||..|+|+|.++++.++ .++++++++|||||||++|++|++..+... .+.+++|++|+++|+.|+++
T Consensus 11 ~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 89 (206)
T 1vec_A 11 KRELLMGIFEMGWEKPSPIQEESIPIAL-SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQ 89 (206)
T ss_dssp CHHHHHHHHTTTCCSCCHHHHHHHHHHH-TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCCCCHHHHHHHHHHc-cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHH
Confidence 334444443 89999999999999998 679999999999999999999999887543 35689999999999999999
Q ss_pred HHHHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHH
Q 043190 753 DWKDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPIL 828 (1492)
Q Consensus 753 ~~~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~ 828 (1492)
.+.+......+.++..++|+...... ...+++|+|+||+++...+.+. ...+++++++|+||||++.+ .++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~lViDEah~~~~~~~~~~l 167 (206)
T 1vec_A 90 ICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG--VAKVDHVQMIVLDEADKLLSQDFVQIM 167 (206)
T ss_dssp HHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT--CSCCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred HHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC--CcCcccCCEEEEEChHHhHhhCcHHHH
Confidence 99875544436788888887664321 2346899999999998777653 33478899999999998754 444444
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
+.++.. .+.+.+++++|||+++
T Consensus 168 ~~i~~~-------~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 168 EDIILT-------LPKNRQILLYSATFPL 189 (206)
T ss_dssp HHHHHH-------SCTTCEEEEEESCCCH
T ss_pred HHHHHh-------CCccceEEEEEeeCCH
Confidence 444332 3457899999999975
No 74
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.87 E-value=7.8e-22 Score=219.01 Aligned_cols=163 Identities=17% Similarity=0.175 Sum_probs=131.1
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-CCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-QSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
||..|+|+|.++++.++ .++++++++|||||||++|.+|++..+.. ..+.+++|++|+++|+.|+++.+.+......+
T Consensus 43 g~~~~~~~Q~~~i~~~~-~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 121 (230)
T 2oxc_A 43 GFERPSPVQLKAIPLGR-CGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEG 121 (230)
T ss_dssp TCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCC
Confidence 99999999999999998 68999999999999999999999988754 34679999999999999999999875544447
Q ss_pred CEEEEEcCCCCcch--hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC--CccHHHHHHHHHHHhh
Q 043190 764 KEMVEMTGDYTPDL--MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE--RGPILEVIVSRMRYIS 839 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~--~g~~~~~i~~~l~~~~ 839 (1492)
.++..+.|+..... ....+++|+|+||+++..+++.. ...+++++++|+||||++.+. ++..+..++..
T Consensus 122 ~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~----- 194 (230)
T 2oxc_A 122 LECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELD--YLNPGSIRLFILDEADKLLEEGSFQEQINWIYSS----- 194 (230)
T ss_dssp CCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTT--SSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHH-----
T ss_pred ceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcC--CcccccCCEEEeCCchHhhcCcchHHHHHHHHHh-----
Confidence 88999999876432 33457899999999998877653 334788999999999987542 44444444432
Q ss_pred hccCCceEEEEEcCCCCC
Q 043190 840 SQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~ 857 (1492)
.+...|++++|||+++
T Consensus 195 --~~~~~~~l~lSAT~~~ 210 (230)
T 2oxc_A 195 --LPASKQMLAVSATYPE 210 (230)
T ss_dssp --SCSSCEEEEEESCCCH
T ss_pred --CCCCCeEEEEEeccCH
Confidence 3457899999999875
No 75
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.87 E-value=1.6e-21 Score=220.10 Aligned_cols=174 Identities=14% Similarity=0.199 Sum_probs=134.1
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC----------CCceEEEEcccHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ----------SDMKVVYIAPLKAIVRERMNDW 754 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~----------~~~~~l~i~P~r~La~q~~~~~ 754 (1492)
||..|+|+|.++++.++ .+++++++||||||||++|++|++..+... .+.+++|++|+++|+.|+++++
T Consensus 42 g~~~~~~~Q~~~i~~i~-~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 42 SYQRPTPIQKNAIPAIL-EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp TCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 89999999999999998 689999999999999999999999887532 2468999999999999999998
Q ss_pred HHHhhhccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccC-CCCccHHHH
Q 043190 755 KDRLVSQLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLG-AERGPILEV 830 (1492)
Q Consensus 755 ~~~~~~~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~-~~~g~~~~~ 830 (1492)
.+.. ...+.++..+.|+...... ...+++|+|+||+++..++.+. ...+++++++|+||||++. ..++..+..
T Consensus 121 ~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~~~~~~~~~~~~~ 197 (253)
T 1wrb_A 121 QKFS-LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--KISLEFCKYIVLDEADRMLDMGFEPQIRK 197 (253)
T ss_dssp HHHH-TTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT--SBCCTTCCEEEEETHHHHHHTTCHHHHHH
T ss_pred HHHh-ccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC--CCChhhCCEEEEeCHHHHHhCchHHHHHH
Confidence 8744 3347888888887654322 2346899999999998887763 2347889999999999774 356666666
Q ss_pred HHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 831 IVSRMRYISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 831 i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
++.+++. ....+.|++++|||+++ ..+++..+
T Consensus 198 i~~~~~~---~~~~~~q~l~~SAT~~~~~~~~~~~~ 230 (253)
T 1wrb_A 198 IIEESNM---PSGINRQTLMFSATFPKEIQKLAADF 230 (253)
T ss_dssp HHHSSCC---CCGGGCEEEEEESSCCHHHHHHHHHH
T ss_pred HHhhccC---CCCCCcEEEEEEEeCCHHHHHHHHHH
Confidence 6553210 11126899999999976 34444433
No 76
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.86 E-value=4.4e-21 Score=211.67 Aligned_cols=182 Identities=18% Similarity=0.186 Sum_probs=136.3
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC-CceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS-DMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~-~~~~l~i~P~r~La~q~~ 751 (1492)
+++...+.+. ||..|+|+|.++++.++ .++++++++|||+|||++|++|++..+.... +.+++|++|+++|+.|++
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~ 99 (220)
T 1t6n_A 21 LKPELLRAIVDCGFEHPSEVQHECIPQAI-LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQIS 99 (220)
T ss_dssp CCHHHHHHHHHTTCCCCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHH
Confidence 3334444443 89999999999999998 6789999999999999999999999876543 459999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchhc----cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLMA----LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPI 827 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~~----~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~ 827 (1492)
+++.+......+.++..++|+....... ...++|+|+||+++..++++. ...+++++++|+||||++.+..+
T Consensus 100 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--~~~~~~~~~lViDEah~~~~~~~-- 175 (220)
T 1t6n_A 100 KEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK--SLNLKHIKHFILDECDKMLEQLD-- 175 (220)
T ss_dssp HHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEESHHHHHSSHH--
T ss_pred HHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhC--CCCcccCCEEEEcCHHHHhcccC--
Confidence 9988754433378899999987643221 135699999999998887763 33478999999999998754211
Q ss_pred HHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHHH
Q 043190 828 LEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLADW 864 (1492)
Q Consensus 828 ~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~~ 864 (1492)
+...+. .+....+.+.|++++|||+++ .+++++.
T Consensus 176 ~~~~~~---~i~~~~~~~~~~i~~SAT~~~~~~~~~~~ 210 (220)
T 1t6n_A 176 MRRDVQ---EIFRMTPHEKQVMMFSATLSKEIRPVCRK 210 (220)
T ss_dssp HHHHHH---HHHHTSCSSSEEEEEESCCCTTTHHHHHT
T ss_pred cHHHHH---HHHHhCCCcCeEEEEEeecCHHHHHHHHH
Confidence 222222 222334567899999999987 3555543
No 77
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.86 E-value=1.2e-20 Score=240.75 Aligned_cols=324 Identities=17% Similarity=0.185 Sum_probs=202.6
Q ss_pred CCCHHHHHHHHhhh--------cCCCcEEEecCCCCCchHHHHHHHHHHhccCC-----CceEEEEcccHHHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILY--------HTDNNVLLGAPTGSGKTISAELAMLHLFNTQS-----DMKVVYIAPLKAIVRERMNDW 754 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~--------~~~~~vli~apTGsGKT~~~~l~il~~l~~~~-----~~~~l~i~P~r~La~q~~~~~ 754 (1492)
.|+|+|.+++..++ ..+...|++.+||+|||++++..+...+...+ ..++||++|+ +|+.|..+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 59999999998764 35568999999999999999888777665432 3569999997 7888877777
Q ss_pred HHHhhhccCCEEEEEcCCCCcchh-----c------cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCC
Q 043190 755 KDRLVSQLGKEMVEMTGDYTPDLM-----A------LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE 823 (1492)
Q Consensus 755 ~~~~~~~~g~~v~~~~g~~~~~~~-----~------~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~ 823 (1492)
.+.+.. ...+..+.|+...... . ....+|+|+|++.+...... .....+++||+||||.+.+.
T Consensus 134 ~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~----l~~~~~~~vI~DEaH~ikn~ 207 (644)
T 1z3i_X 134 GKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV----LHKGKVGLVICDEGHRLKNS 207 (644)
T ss_dssp HHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT----TTTSCCCEEEETTGGGCCTT
T ss_pred HHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH----hhcCCccEEEEECceecCCh
Confidence 765433 3455555554322110 0 12478999999987543322 11246789999999998543
Q ss_pred CccHHHHHHHHHHHhhhccCCceEEEEEcCCCCC--hH------------------HHHHHhcCC-------c-------
Q 043190 824 RGPILEVIVSRMRYISSQTERAVRFIGLSTALAN--AG------------------DLADWLGVG-------E------- 869 (1492)
Q Consensus 824 ~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~--~~------------------~~~~~l~~~-------~------- 869 (1492)
..... ..+..+ ...+.++||||+-. .. .+.+++..+ .
T Consensus 208 ~~~~~-~al~~l--------~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~ 278 (644)
T 1z3i_X 208 DNQTY-LALNSM--------NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRA 278 (644)
T ss_dssp CHHHH-HHHHHH--------CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHH
T ss_pred hhHHH-HHHHhc--------ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHH
Confidence 22222 222222 13467999999732 11 111111100 0
Q ss_pred --------------ceeEecCC----CccccCcEEEE-eccCCc---cccc-------------------cc--------
Q 043190 870 --------------IGLFNFKP----SVRPVPLEVHI-QGYPGK---FYCP-------------------RM-------- 900 (1492)
Q Consensus 870 --------------~~~~~~~~----~~r~~~l~~~~-~~~~~~---~~~~-------------------~~-------- 900 (1492)
..+..-.. ..-|...+..+ ...... .|.. ..
T Consensus 279 ~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk 358 (644)
T 1z3i_X 279 AGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKK 358 (644)
T ss_dssp HHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHH
Confidence 00000000 00010111000 000000 0000 00
Q ss_pred --------------------------------c----ccCh--hHHHHHhh---cCCCCCeeEEecChHHHHHHHHHHHH
Q 043190 901 --------------------------------N----SMNK--PAYAAICT---HSPTKPVLIFVSSRRQTRLTALDLIQ 939 (1492)
Q Consensus 901 --------------------------------~----~~~~--~~~~~l~~---~~~~~~~LIF~~s~~~~~~~a~~L~~ 939 (1492)
. .... .....+.. ...+.++|||++.+..+..++..|..
T Consensus 359 ~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~ 438 (644)
T 1z3i_X 359 LCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN 438 (644)
T ss_dssp HHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHH
Confidence 0 0000 01111111 12467899999999988877765532
Q ss_pred HHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCce---EEEeccccccccC
Q 043190 940 FAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKIQ---VLVCTSTLAWGVN 1016 (1492)
Q Consensus 940 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~---vLvaT~~l~~Gvd 1016 (1492)
.+..+..+||+++..+|..+++.|++|... +|++|.++++|+|
T Consensus 439 ----------------------------------~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Gln 484 (644)
T 1z3i_X 439 ----------------------------------RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLN 484 (644)
T ss_dssp ----------------------------------HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCC
T ss_pred ----------------------------------CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcc
Confidence 256788999999999999999999998754 8999999999999
Q ss_pred CCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1017 LPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1017 ip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
++++++||+ ||+ +.++..+.|++||++|.|..+...+|.++....
T Consensus 485 l~~a~~Vi~----~d~------~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~t 529 (644)
T 1z3i_X 485 LIGANRLVM----FDP------DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGT 529 (644)
T ss_dssp CTTEEEEEE----CSC------CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTS
T ss_pred cccCCEEEE----ECC------CCCccHHHHHHHhhhhcCCCCceEEEEEEECCC
Confidence 999999998 553 346899999999999999877778888877664
No 78
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.86 E-value=1.5e-21 Score=215.20 Aligned_cols=163 Identities=15% Similarity=0.188 Sum_probs=127.9
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHHHHHHhhhcc-
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKDRLVSQL- 762 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~~~- 762 (1492)
||..|+|+|.++++.++ +++++++++|||||||++|.+|+++.+... .+.+++|++|+++|+.|+++.+.+......
T Consensus 23 g~~~~~~~Q~~~i~~~~-~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 23 RFYKPTEIQERIIPGAL-RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp TCCSCCHHHHHHHHHHH-HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCCCCHHHHHHHHHHh-CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 89999999999999998 678999999999999999999999987653 357899999999999999999887543221
Q ss_pred --CCEEEEEcCCCCcchhc---cCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHH
Q 043190 763 --GKEMVEMTGDYTPDLMA---LLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMR 836 (1492)
Q Consensus 763 --g~~v~~~~g~~~~~~~~---~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~ 836 (1492)
+..+..+.|+....... ..+++|+|+||+++..++++. ...+++++++|+||||.+.+ .++..+..++.
T Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~--- 176 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ--ALDVHTAHILVVDEADLMLDMGFITDVDQIAA--- 176 (219)
T ss_dssp GGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT--CCCGGGCCEEEECSHHHHHHTTCHHHHHHHHH---
T ss_pred ccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcC--CCCcCcceEEEEcCchHHhhhChHHHHHHHHH---
Confidence 57788888876543221 236799999999998877752 33478899999999998753 34333433332
Q ss_pred HhhhccCCceEEEEEcCCCCC
Q 043190 837 YISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 837 ~~~~~~~~~~~ii~lSATl~~ 857 (1492)
..+...|++++|||+++
T Consensus 177 ----~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 177 ----RMPKDLQMLVFSATIPE 193 (219)
T ss_dssp ----TSCTTCEEEEEESCCCG
T ss_pred ----hCCcccEEEEEecCCCH
Confidence 33457899999999976
No 79
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.86 E-value=3.3e-21 Score=213.48 Aligned_cols=172 Identities=19% Similarity=0.230 Sum_probs=130.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
+.....+.+. ||..|+|+|.++++.++ .++++++++|||||||++|.+|++..+... .+.+++|++|+++|+.|++
T Consensus 21 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~-~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 99 (224)
T 1qde_A 21 LDENLLRGVFGYGFEEPSAIQQRAIMPII-EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQ 99 (224)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHHHh-cCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHH
Confidence 3334444443 89999999999999998 678999999999999999999999987543 4579999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcch--hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHH
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDL--MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPIL 828 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~--~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~ 828 (1492)
+.+.+.... .+.++..++|+..... ....+++|+|+||+++...+.+. ...+++++++|+||||++.+ .++..+
T Consensus 100 ~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~--~~~~~~~~~iViDEah~~~~~~~~~~l 176 (224)
T 1qde_A 100 KVVMALAFH-MDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR--RFRTDKIKMFILDEADEMLSSGFKEQI 176 (224)
T ss_dssp HHHHHHTTT-SCCCEEEECC----------CTTCSEEEECHHHHHHHHHTT--SSCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred HHHHHHhcc-cCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhC--CcchhhCcEEEEcChhHHhhhhhHHHH
Confidence 999874443 4888888888765332 23346899999999987777653 34478899999999998743 344444
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCC
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALAN 857 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~ 857 (1492)
..++.. .+...|++++|||+++
T Consensus 177 ~~i~~~-------~~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 177 YQIFTL-------LPPTTQVVLLSATMPN 198 (224)
T ss_dssp HHHHHH-------SCTTCEEEEEESSCCH
T ss_pred HHHHHh-------CCccCeEEEEEeecCH
Confidence 443332 3457899999999987
No 80
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=219.04 Aligned_cols=171 Identities=15% Similarity=0.184 Sum_probs=134.1
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
||..|+++|.++++.++ .+++++++||||||||++|++|++..+... .+.+++|++|+++|+.|+++.+.+... ..+
T Consensus 62 g~~~~~~~Q~~~i~~i~-~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~-~~~ 139 (249)
T 3ber_A 62 GWTKPTKIQIEAIPLAL-QGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS-SIG 139 (249)
T ss_dssp TCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHG-GGT
T ss_pred CCCCCCHHHHHHHHHHh-CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhc-cCC
Confidence 99999999999999998 789999999999999999999999877654 356899999999999999999987444 448
Q ss_pred CEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHHHhh
Q 043190 764 KEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMRYIS 839 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~~~~ 839 (1492)
.++..+.|+...... ...+++|+|+||+++...+.+.. ...+++++++|+||||++.+ +++..+..++.
T Consensus 140 ~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~-~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~------ 212 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTK-GFNLRALKYLVMDEADRILNMDFETEVDKILK------ 212 (249)
T ss_dssp CCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHST-TCCCTTCCEEEECSHHHHHHTTCHHHHHHHHH------
T ss_pred eeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCC-CcCccccCEEEEcChhhhhccChHHHHHHHHH------
Confidence 899999988664322 23578999999999987776532 23478899999999997743 45545444443
Q ss_pred hccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 840 SQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 840 ~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
..+...+++++|||+++ ..++++.+
T Consensus 213 -~~~~~~~~l~~SAT~~~~v~~~~~~~ 238 (249)
T 3ber_A 213 -VIPRDRKTFLFSATMTKKVQKLQRAA 238 (249)
T ss_dssp -SSCSSSEEEEEESSCCHHHHHHHHHH
T ss_pred -hCCCCCeEEEEeccCCHHHHHHHHHH
Confidence 23457899999999976 34444443
No 81
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.86 E-value=2e-21 Score=216.98 Aligned_cols=171 Identities=16% Similarity=0.193 Sum_probs=132.1
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc-----CCCceEEEEcccHHHHHHHHHHHHHHhh
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT-----QSDMKVVYIAPLKAIVRERMNDWKDRLV 759 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~-----~~~~~~l~i~P~r~La~q~~~~~~~~~~ 759 (1492)
||..|+|+|.++++.++ .++++++++|||||||++|++|++..+.. .++.+++|++|+++|+.|+++.+.+..
T Consensus 44 ~~~~~~~~Q~~~i~~~~-~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~- 121 (236)
T 2pl3_A 44 QYRLVTEIQKQTIGLAL-QGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVG- 121 (236)
T ss_dssp TCCBCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT-
T ss_pred CCCCCCHHHHHHHHHHh-CCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHh-
Confidence 89999999999999998 78999999999999999999999987643 246789999999999999999998744
Q ss_pred hccCCEEEEEcCCCCcc--hhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHH
Q 043190 760 SQLGKEMVEMTGDYTPD--LMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMR 836 (1492)
Q Consensus 760 ~~~g~~v~~~~g~~~~~--~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~ 836 (1492)
...+.++..++|+.... .....+++|+|+||+++...+.+.. ...+.+++++|+||||++.+ +++..+..++.
T Consensus 122 ~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~-~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~--- 197 (236)
T 2pl3_A 122 KNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETV-SFHATDLQMLVLDEADRILDMGFADTMNAVIE--- 197 (236)
T ss_dssp TTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCS-SCCCTTCCEEEETTHHHHHHTTTHHHHHHHHH---
T ss_pred CCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcC-CcccccccEEEEeChHHHhcCCcHHHHHHHHH---
Confidence 33478899998876543 2334578999999999977765421 23467899999999997743 44444444433
Q ss_pred HhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 837 YISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 837 ~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
..+...+++++|||+++ ..++++.+
T Consensus 198 ----~~~~~~~~l~~SAT~~~~~~~~~~~~ 223 (236)
T 2pl3_A 198 ----NLPKKRQTLLFSATQTKSVKDLARLS 223 (236)
T ss_dssp ----TSCTTSEEEEEESSCCHHHHHHHHHS
T ss_pred ----hCCCCCeEEEEEeeCCHHHHHHHHHh
Confidence 23457899999999976 44555543
No 82
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.86 E-value=2.7e-21 Score=215.60 Aligned_cols=178 Identities=15% Similarity=0.225 Sum_probs=131.1
Q ss_pred cCchhHhhhc--CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC-CCceEEEEcccHHHHHHHH
Q 043190 675 LGNNIYEALY--NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ-SDMKVVYIAPLKAIVRERM 751 (1492)
Q Consensus 675 l~~~~~~~~~--~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~-~~~~~l~i~P~r~La~q~~ 751 (1492)
+.....+.+. ||..|+|+|.++++.++ .+++++++||||||||++|.+|+++.+... .+.+++|++|+++|+.|++
T Consensus 37 l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~-~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 115 (237)
T 3bor_A 37 LKESLLRGIYAYGFEKPSAIQQRAIIPCI-KGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQ 115 (237)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHH-TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh-CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHH
Confidence 3344444443 99999999999999998 678999999999999999999999987643 4579999999999999999
Q ss_pred HHHHHHhhhccCCEEEEEcCCCCcchh--cc--CCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCcc
Q 043190 752 NDWKDRLVSQLGKEMVEMTGDYTPDLM--AL--LSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGP 826 (1492)
Q Consensus 752 ~~~~~~~~~~~g~~v~~~~g~~~~~~~--~~--~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~ 826 (1492)
+.+.+. ....+..+..+.|+...... .. ..++|+|+||+++..++.+. ...+++++++|+||||.+.+ .++.
T Consensus 116 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~--~~~~~~~~~lViDEah~~~~~~~~~ 192 (237)
T 3bor_A 116 KVILAL-GDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRR--YLSPKWIKMFVLDEADEMLSRGFKD 192 (237)
T ss_dssp HHHHHH-TTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTT--SSCSTTCCEEEEESHHHHHHTTCHH
T ss_pred HHHHHH-hhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhC--CcCcccCcEEEECCchHhhccCcHH
Confidence 999874 44447788888886543321 11 23799999999987777652 23467899999999997643 4444
Q ss_pred HHHHHHHHHHHhhhccCCceEEEEEcCCCCC-hHHHHH
Q 043190 827 ILEVIVSRMRYISSQTERAVRFIGLSTALAN-AGDLAD 863 (1492)
Q Consensus 827 ~~~~i~~~l~~~~~~~~~~~~ii~lSATl~~-~~~~~~ 863 (1492)
.+..++.. .+...|++++|||+++ ..+++.
T Consensus 193 ~l~~i~~~-------~~~~~~~i~~SAT~~~~~~~~~~ 223 (237)
T 3bor_A 193 QIYEIFQK-------LNTSIQVVLLSATMPTDVLEVTK 223 (237)
T ss_dssp HHHHHHHH-------SCTTCEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHh-------CCCCCeEEEEEEecCHHHHHHHH
Confidence 44444332 3457899999999976 344443
No 83
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.85 E-value=6.1e-21 Score=249.80 Aligned_cols=323 Identities=16% Similarity=0.180 Sum_probs=205.3
Q ss_pred CCCHHHHHHHHhhh---cCCCcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 688 HFNPIQTQIFHILY---HTDNNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~---~~~~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
.|+|+|.+++..++ ..+.+.|++.+||+|||++++..+...+. ....+.+|||+| .+|+.|..+++.+.+ .+
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~---p~ 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA---PD 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS---TT
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC---CC
Confidence 59999999997543 46789999999999999998777665432 234678999999 677887777666543 25
Q ss_pred CEEEEEcCCCCcch---------------hccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHH
Q 043190 764 KEMVEMTGDYTPDL---------------MALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPIL 828 (1492)
Q Consensus 764 ~~v~~~~g~~~~~~---------------~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~ 828 (1492)
.++..++|+..... ....+.+|+|+|++.+....... ....+++||+||||.+..... ..
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l----~~~~w~~vIvDEaH~lkn~~s-~~ 386 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAEL----GSIKWQFMAVDEAHRLKNAES-SL 386 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHH----HTSEEEEEEETTGGGGCCSSS-HH
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHH----hcCCcceeehhhhhhhcCchh-HH
Confidence 67888888653221 12346799999999874432221 123678999999999854322 22
Q ss_pred HHHHHHHHHhhhccCCceEEEEEcCCCCC--hHHHH---HHhcCCcce---eEecCCC--------------ccc-----
Q 043190 829 EVIVSRMRYISSQTERAVRFIGLSTALAN--AGDLA---DWLGVGEIG---LFNFKPS--------------VRP----- 881 (1492)
Q Consensus 829 ~~i~~~l~~~~~~~~~~~~ii~lSATl~~--~~~~~---~~l~~~~~~---~~~~~~~--------------~r~----- 881 (1492)
...+.. . ...+.++||||+-. ..++. .|+....-. .+.+... .+|
T Consensus 387 ~~~l~~-------l-~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR 458 (800)
T 3mwy_W 387 YESLNS-------F-KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRR 458 (800)
T ss_dssp HHHHTT-------S-EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEEC
T ss_pred HHHHHH-------h-hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhh
Confidence 222221 1 24556899999832 33332 333211100 0000000 000
Q ss_pred --------cCcE-EEE--eccCCc---ccccc-------------------c----------------------------
Q 043190 882 --------VPLE-VHI--QGYPGK---FYCPR-------------------M---------------------------- 900 (1492)
Q Consensus 882 --------~~l~-~~~--~~~~~~---~~~~~-------------------~---------------------------- 900 (1492)
.|-. ... ...... .|... .
T Consensus 459 ~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 538 (800)
T 3mwy_W 459 LKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFG 538 (800)
T ss_dssp CGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-
T ss_pred hHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcc
Confidence 0000 000 000000 00000 0
Q ss_pred -ccc--------------Chh-HHHHHhh-cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHh
Q 043190 901 -NSM--------------NKP-AYAAICT-HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLS 963 (1492)
Q Consensus 901 -~~~--------------~~~-~~~~l~~-~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 963 (1492)
... +.. +...+.. ...+.++|||+.....+..++..|..
T Consensus 539 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~------------------------ 594 (800)
T 3mwy_W 539 DGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSI------------------------ 594 (800)
T ss_dssp ---CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHH------------------------
T ss_pred cccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHh------------------------
Confidence 000 000 0111111 24567999999999988877766632
Q ss_pred hcCcHHHHHHhccceEeecCCCCHHHHHHHHHHHhcCCc---eEEEeccccccccCCCCcEEEEecceeeeCccCccccC
Q 043190 964 QVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEELFANNKI---QVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDF 1040 (1492)
Q Consensus 964 ~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~---~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~ 1040 (1492)
.++.+..+||+++..+|..+++.|++|.. .+|++|.+++.|+|++++++||. ||+ +.
T Consensus 595 ----------~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~----~D~------~w 654 (800)
T 3mwy_W 595 ----------KGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI----FDS------DW 654 (800)
T ss_dssp ----------HTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE----SSC------CS
T ss_pred ----------CCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEE----ecC------CC
Confidence 26678899999999999999999998654 49999999999999999999997 553 33
Q ss_pred CHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 1041 PITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 1041 ~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
++..+.|++||++|.|..+...+|.++....
T Consensus 655 np~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 655 NPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp CSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred ChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 5789999999999999888888888888764
No 84
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.85 E-value=4e-21 Score=210.02 Aligned_cols=168 Identities=18% Similarity=0.234 Sum_probs=131.4
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc----CCCceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT----QSDMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~----~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
|+..|+|+|.++++.++ +++++++++|||||||++|.+|++..+.. .++.+++|++|+++|+.|+++.+.+.+..
T Consensus 20 ~~~~~~~~Q~~~i~~~~-~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 20 GLTTPTPIQAAALPLAL-EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp TCCSCCHHHHHHHHHHH-TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHc-CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 89999999999999998 67899999999999999999999998753 24678999999999999999998875432
Q ss_pred ccCCEEEEEcCCCCcchh---ccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCC-CCccHHHHHHHHHH
Q 043190 761 QLGKEMVEMTGDYTPDLM---ALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-ERGPILEVIVSRMR 836 (1492)
Q Consensus 761 ~~g~~v~~~~g~~~~~~~---~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-~~g~~~~~i~~~l~ 836 (1492)
.++..+.|+...... ...+++|+|+||+++..++++ ....+++++++|+||||.+.+ .++..++.++.
T Consensus 99 ---~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~--- 170 (207)
T 2gxq_A 99 ---LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--GVLDLSRVEVAVLDEADEMLSMGFEEEVEALLS--- 170 (207)
T ss_dssp ---SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH--TSSCCTTCSEEEEESHHHHHHTTCHHHHHHHHH---
T ss_pred ---ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc--CCcchhhceEEEEEChhHhhccchHHHHHHHHH---
Confidence 567778887653221 224789999999999877775 233478899999999997743 44444444433
Q ss_pred HhhhccCCceEEEEEcCCCCC-hHHHHHHh
Q 043190 837 YISSQTERAVRFIGLSTALAN-AGDLADWL 865 (1492)
Q Consensus 837 ~~~~~~~~~~~ii~lSATl~~-~~~~~~~l 865 (1492)
..+.+.+++++|||+++ .+++++++
T Consensus 171 ----~~~~~~~~i~~SAT~~~~~~~~~~~~ 196 (207)
T 2gxq_A 171 ----ATPPSRQTLLFSATLPSWAKRLAERY 196 (207)
T ss_dssp ----TSCTTSEEEEECSSCCHHHHHHHHHH
T ss_pred ----hCCccCeEEEEEEecCHHHHHHHHHH
Confidence 23457899999999986 45555554
No 85
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.85 E-value=8.2e-20 Score=232.16 Aligned_cols=118 Identities=16% Similarity=0.192 Sum_probs=99.5
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
..+.++||||+|++.++.++..|.+ .+..+.++||++++.+|..++
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~----------------------------------~gi~~~~lh~~~~~~~R~~~~ 482 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVE----------------------------------HGIRARYLHHELDAFKRQALI 482 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTCCHHHHHHHH
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHh----------------------------------cCCCceeecCCCCHHHHHHHH
Confidence 3567999999999999999987743 256788999999999999999
Q ss_pred HHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH
Q 043190 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF 1074 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~ 1074 (1492)
+.|++|+++|||||+++++|+|+|++++||+ |+..... ++.+..+|+||+|||||.+ .|.|+++++..+...
T Consensus 483 ~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~----~d~d~~G-~p~s~~~~iQr~GRagR~~---~G~~i~~~~~~~~~~ 554 (664)
T 1c4o_A 483 RDLRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARNA---RGEVWLYADRVSEAM 554 (664)
T ss_dssp HHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSCS-GGGSHHHHHHHHGGGTTST---TCEEEEECSSCCHHH
T ss_pred HHhhcCCceEEEccChhhcCccCCCCCEEEE----eCCcccC-CCCCHHHHHHHHCccCcCC---CCEEEEEEcCCCHHH
Confidence 9999999999999999999999999999987 4432211 2447889999999999974 799999998776544
No 86
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.84 E-value=1.1e-19 Score=223.29 Aligned_cols=131 Identities=18% Similarity=0.111 Sum_probs=105.1
Q ss_pred hcCCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhcc
Q 043190 683 LYNFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQL 762 (1492)
Q Consensus 683 ~~~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~ 762 (1492)
..|+ .|+++|..+++.++ .|+ |..++||+|||++|.+|++..... +..+++++||+.||.|.++.+... ...+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~Ll-qG~--IaeakTGeGKTLvf~Lp~~L~aL~--G~qv~VvTPTreLA~Qdae~m~~l-~~~l 147 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLH-EGK--IAEMKTGEGKTLVATLAVALNALT--GKGVHVVTVNDYLARRDAEWMGPV-YRGL 147 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHH-TTS--EEECCSTHHHHHHHHHHHHHHHTT--CSCCEEEESSHHHHHHHHHHHHHH-HHTT
T ss_pred HhCC-CCcHHHHhhccccc-CCc--eeeccCCCchHHHHHHHHHHHHHh--CCCEEEEeCCHHHHHHHHHHHHHH-HHhc
Confidence 4499 79999999999988 565 999999999999999999644333 678999999999999999988874 4556
Q ss_pred CCEEEEEcCCCCcchhc-cCCCcEEEECchhh-hHhhhccc----CccccC---cccEEEEeccccc
Q 043190 763 GKEMVEMTGDYTPDLMA-LLSADIIISTPEKW-DGISRNWH----SRNYVK---KVGLMILDEIHLL 820 (1492)
Q Consensus 763 g~~v~~~~g~~~~~~~~-~~~~~Iiv~Tpe~l-~~l~~~~~----~~~~l~---~i~liViDEaH~l 820 (1492)
|++|+.++|+.+.+.+. ...++|+|+||+.+ .++++... ....++ .+.++||||+|.+
T Consensus 148 GLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsm 214 (997)
T 2ipc_A 148 GLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSI 214 (997)
T ss_dssp TCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHH
Confidence 99999999987754332 34789999999997 45555432 123466 8999999999965
No 87
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.81 E-value=2.8e-18 Score=217.89 Aligned_cols=118 Identities=18% Similarity=0.260 Sum_probs=99.4
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
..++++||||+|++.++.++..|.+ .+..+.++||++++.+|..++
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~----------------------------------~gi~~~~lh~~~~~~~R~~~l 488 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKE----------------------------------IGIKVNYLHSEIKTLERIEII 488 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTCCHHHHHHHH
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHh----------------------------------cCCCeEEEeCCCCHHHHHHHH
Confidence 4567999999999999999987743 256788999999999999999
Q ss_pred HHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH
Q 043190 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF 1074 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~ 1074 (1492)
+.|++|+++|||||+++++|+|+|++++||+ |+..... ++.+..+|+||+|||||. ..|.|++++++.+...
T Consensus 489 ~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~----~d~d~~G-~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 489 RDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKEG-FLRSERSLIQTIGRAARN---AEGRVIMYADKITKSM 560 (661)
T ss_dssp HHHHHTSCSEEEESCCCSTTCCCTTEEEEEE----TTTTCCT-TTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCHHH
T ss_pred HHHhcCCeEEEEecchhhCCcccCCCCEEEE----eCccccc-CCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCHHH
Confidence 9999999999999999999999999999987 4432111 234688999999999996 5899999998876543
No 88
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.80 E-value=3.1e-19 Score=226.76 Aligned_cols=193 Identities=19% Similarity=0.224 Sum_probs=134.4
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeec-CCcccc---cceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFD-SSYRPI---PLAQQYIGISEPNFAARNELLSEICYKKVVDSL 78 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~-~~~rpv---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (1492)
...++|+++||||+|+ ..+++.++... +..++... ...++. .+.+.+...... .......+ ..+...+ ...
T Consensus 261 ~~~~~~~l~~SAT~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~l~~~~-~~~ 336 (563)
T 3i5x_A 261 SADNIKTLLFSATLDDKVQKLANNIMNK-KECLFLDTVDKNEPEAHERIDQSVVISEKF-ANSIFAAV-EHIKKQI-KER 336 (563)
T ss_dssp CTTCCEEEEEESSCCTHHHHHTTTTCCS-SEEEEEESSCSSSCSSCTTEEEEEEEESST-THHHHHHH-HHHHHHH-HHT
T ss_pred CccCceEEEEEccCCHHHHHHHHHhcCC-CceEEEeccCCCCccccccCceEEEECchh-HhhHHHHH-HHHHHHH-hhc
Confidence 3457899999999998 46677776554 22222211 111111 122222222211 11111111 1111111 111
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||+|++.|+.+++.|.+.... ..+++.|||+|++.+|.
T Consensus 337 ~~~~~~iVF~~s~~~~~~l~~~L~~~~~~----------------------------------~~~v~~~h~~~~~~~R~ 382 (563)
T 3i5x_A 337 DSNYKAIIFAPTVKFTSFLCSILKNEFKK----------------------------------DLPILEFHGKITQNKRT 382 (563)
T ss_dssp TTCCEEEEECSCHHHHHHHHHHHHHHHTT----------------------------------TSCEEEESTTSCHHHHH
T ss_pred CCCCcEEEEcCcHHHHHHHHHHHHHhccC----------------------------------CceEEEecCCCCHHHHH
Confidence 45789999999999999999988765321 23589999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
.+++.|++|+++|||||+++++|||+|++++||. |++. .+..+|+||+|||||.| ..|.|++++.+.+...
T Consensus 383 ~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~----~~~p---~s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~ 453 (563)
T 3i5x_A 383 SLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGVP---SELANYIHRIGRTARSG--KEGSSVLFICKDELPF 453 (563)
T ss_dssp HHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESCC---SSTTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHH
T ss_pred HHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE----ECCC---CchhhhhhhcCccccCC--CCceEEEEEchhHHHH
Confidence 9999999999999999999999999999999996 5543 25667999999999999 6799999999888776
Q ss_pred HHHHh
Q 043190 239 YLRLL 243 (1492)
Q Consensus 239 ~~~~~ 243 (1492)
+..+.
T Consensus 454 ~~~l~ 458 (563)
T 3i5x_A 454 VRELE 458 (563)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
No 89
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.78 E-value=1.8e-18 Score=214.79 Aligned_cols=178 Identities=21% Similarity=0.346 Sum_probs=135.4
Q ss_pred CcccEEEEcccCCCh--HHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH--hcC
Q 043190 6 RMIRIVGLSATLPNY--LEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL--RQG 81 (1492)
Q Consensus 6 ~~~riv~lSATl~n~--~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 81 (1492)
+++++++||||.++. +++.++++.. +..+ ...+..|| .+...+ ..... +.. .+.+.+ ..+
T Consensus 173 ~~~~~i~lSAT~~~~~~~~i~~~l~~~-~~~~-~~~~~~r~-~l~~~v--~~~~~---~~~--------~l~~~l~~~~~ 236 (523)
T 1oyw_A 173 PTLPFMALTATADDTTRQDIVRLLGLN-DPLI-QISSFDRP-NIRYML--MEKFK---PLD--------QLMRYVQEQRG 236 (523)
T ss_dssp TTSCEEEEESCCCHHHHHHHHHHHTCC-SCEE-EECCCCCT-TEEEEE--EECSS---HHH--------HHHHHHHHTTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhCCC-CCeE-EeCCCCCC-ceEEEE--EeCCC---HHH--------HHHHHHHhcCC
Confidence 358999999999873 7889999765 2222 23333444 332222 22211 111 122222 256
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+++||||+||++++.+++.|.+. ...++.|||+|++++|..++
T Consensus 237 ~~~IVf~~sr~~~e~l~~~L~~~-------------------------------------g~~~~~~h~~l~~~~R~~~~ 279 (523)
T 1oyw_A 237 KSGIIYCNSRAKVEDTAARLQSK-------------------------------------GISAAAYHAGLENNVRADVQ 279 (523)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHC-------------------------------------CCCEEEecCCCCHHHHHHHH
Confidence 79999999999999999988653 23489999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
+.|++|+++|||||+++++|||+|++++||+ |++. .+..+|.||+|||||.| ..|.|+++++..+...+..
T Consensus 280 ~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~----~~~p---~s~~~y~Qr~GRaGR~g--~~~~~~l~~~~~d~~~~~~ 350 (523)
T 1oyw_A 280 EKFQRDDLQIVVATVAFGMGINKPNVRFVVH----FDIP---RNIESYYQETGRAGRDG--LPAEAMLFYDPADMAWLRR 350 (523)
T ss_dssp HHHHTTSCSEEEECTTSCTTTCCTTCCEEEE----SSCC---SSHHHHHHHHTTSCTTS--SCEEEEEEECHHHHHHHHH
T ss_pred HHHHcCCCeEEEEechhhCCCCccCccEEEE----ECCC---CCHHHHHHHhccccCCC--CCceEEEEeCHHHHHHHHH
Confidence 9999999999999999999999999999996 5543 35667999999999999 6799999999988887777
Q ss_pred HhcC
Q 043190 242 LLTS 245 (1492)
Q Consensus 242 ~~~~ 245 (1492)
++..
T Consensus 351 ~~~~ 354 (523)
T 1oyw_A 351 CLEE 354 (523)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 7765
No 90
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.78 E-value=2e-18 Score=216.35 Aligned_cols=182 Identities=21% Similarity=0.332 Sum_probs=136.8
Q ss_pred CcccEEEEcccCCC--hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh---c
Q 043190 6 RMIRIVGLSATLPN--YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR---Q 80 (1492)
Q Consensus 6 ~~~riv~lSATl~n--~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 80 (1492)
+++|+|+||||+++ .+++.++++.. . ...+...+...++...+... ...... ....+.+.+. .
T Consensus 199 ~~~~ii~lSAT~~~~v~~~i~~~l~~~-~--~~~~~~~~~r~nl~~~v~~~-~~~~~~--------~~~~l~~~l~~~~~ 266 (591)
T 2v1x_A 199 PNASLIGLTATATNHVLTDAQKILCIE-K--CFTFTASFNRPNLYYEVRQK-PSNTED--------FIEDIVKLINGRYK 266 (591)
T ss_dssp TTSEEEEEESSCCHHHHHHHHHHTTCC-S--CEEEECCCCCTTEEEEEEEC-CSSHHH--------HHHHHHHHHTTTTT
T ss_pred CCCcEEEEecCCCHHHHHHHHHHhCCC-C--cEEEecCCCCcccEEEEEeC-CCcHHH--------HHHHHHHHHHHhcc
Confidence 46899999999987 47788898764 2 22333344333443332221 111111 1223334433 5
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
++++||||+||++++.+++.|.+. ..+++.+||||++++|..+
T Consensus 267 ~~~~IVf~~sr~~~e~la~~L~~~-------------------------------------g~~~~~~h~~l~~~~R~~~ 309 (591)
T 2v1x_A 267 GQSGIIYCFSQKDSEQVTVSLQNL-------------------------------------GIHAGAYHANLEPEDKTTV 309 (591)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHHH
T ss_pred CCCeEEEeCcHHHHHHHHHHHHHC-------------------------------------CCCEEEecCCCCHHHHHHH
Confidence 689999999999999999988642 3358999999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
++.|++|.++|||||+++++|||+|++++||+ |++.. +..+|.||+|||||.| ..|.|+++++..+...+.
T Consensus 310 ~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~----~~~p~---s~~~y~Qr~GRaGR~G--~~g~~i~l~~~~D~~~~~ 380 (591)
T 2v1x_A 310 HRKWSANEIQVVVATVAFGMGIDKPDVRFVIH----HSMSK---SMENYYQESGRAGRDD--MKADCILYYGFGDIFRIS 380 (591)
T ss_dssp HHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE----SSCCS---SHHHHHHHHTTSCTTS--SCEEEEEEECHHHHHHHH
T ss_pred HHHHHcCCCeEEEEechhhcCCCcccccEEEE----eCCCC---CHHHHHHHhccCCcCC--CCceEEEEEChHHHHHHH
Confidence 99999999999999999999999999999996 65432 5667999999999998 679999999988887777
Q ss_pred HHhcC
Q 043190 241 RLLTS 245 (1492)
Q Consensus 241 ~~~~~ 245 (1492)
.++..
T Consensus 381 ~~~~~ 385 (591)
T 2v1x_A 381 SMVVM 385 (591)
T ss_dssp HHTTT
T ss_pred HHHhh
Confidence 66543
No 91
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=4.5e-18 Score=215.87 Aligned_cols=191 Identities=19% Similarity=0.226 Sum_probs=132.5
Q ss_pred CCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecC-Cccc---ccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHh
Q 043190 5 QRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDS-SYRP---IPLAQQYIGISEPNFAARNELLSEICYKKVVDSLR 79 (1492)
Q Consensus 5 ~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~-~~rp---v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (1492)
+.++|+++||||+|+ ..+++.++... +..++.... ..++ ..+.+.+...... .......+ ..+...+ ....
T Consensus 211 ~~~~~~l~~SAT~~~~v~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~-~~l~~~~-~~~~ 286 (579)
T 3sqw_A 211 ADNIKTLLFSATLDDKVQKLANNIMNK-KECLFLDTVDKNEPEAHERIDQSVVISEKF-ANSIFAAV-EHIKKQI-KERD 286 (579)
T ss_dssp TTCCEEEEEESSCCTHHHHHTTTTCCS-SEEEEEESSCSSSCSSCTTEEEEEEEESST-THHHHHHH-HHHHHHH-HHTT
T ss_pred ccCceEEEEeccCChHHHHHHHHHcCC-CceEEEeecCccccccccccceEEEEecch-hhhHHHHH-HHHHHHH-hhcC
Confidence 457899999999998 46666666554 222222111 1111 1222223222221 11111111 1111111 1114
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.+.++||||+|++.|+.+++.|.+.... ...+..|||+|++++|..
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~----------------------------------~~~v~~~hg~~~~~~R~~ 332 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK----------------------------------DLPILEFHGKITQNKRTS 332 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT----------------------------------TSCEEEESTTSCHHHHHH
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC----------------------------------CCcEEEecCCCCHHHHHH
Confidence 5679999999999999999988765321 235889999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+++.|++|.++|||||+++++|||+|++++||. |++. .+..+|+||+|||||.| ..|.|++++.+.+...+
T Consensus 333 ~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~----~~~p---~s~~~y~Qr~GRagR~g--~~g~~i~~~~~~e~~~~ 403 (579)
T 3sqw_A 333 LVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ----IGVP---SELANYIHRIGRTARSG--KEGSSVLFICKDELPFV 403 (579)
T ss_dssp HHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE----ESCC---SSTTHHHHHHTTSSCTT--CCEEEEEEEEGGGHHHH
T ss_pred HHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE----cCCC---CCHHHhhhhccccccCC--CCceEEEEEcccHHHHH
Confidence 999999999999999999999999999999996 5543 25667999999999999 67999999998886665
Q ss_pred HHH
Q 043190 240 LRL 242 (1492)
Q Consensus 240 ~~~ 242 (1492)
..+
T Consensus 404 ~~l 406 (579)
T 3sqw_A 404 REL 406 (579)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 92
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=3.8e-18 Score=180.06 Aligned_cols=122 Identities=20% Similarity=0.259 Sum_probs=97.6
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++||||++++.++.++..|.+. ..+++++||+|++.+|..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~g~~~~~~R~~ 75 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD-------------------------------------GHQVSLLSGELTVEQRAS 75 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT-------------------------------------TCCEEEECSSCCHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-------------------------------------CCcEEEEeCCCCHHHHHH
Confidence 4679999999999999999877542 335999999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+++.|++|.++|||||+++++|+|+|+.++||+...++++. ...+..+|+||+|||||.| ..|.++++++..+...+
T Consensus 76 ~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~-~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~~~ 152 (175)
T 2rb4_A 76 IIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQG-EEPDYETYLHRIGRTGRFG--KKGLAFNMIEVDELPSL 152 (175)
T ss_dssp HHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--C-CSCCHHHHHHHHCBC------CCEEEEEEECGGGHHHH
T ss_pred HHHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCcc-ccCCHHHHHHHhcccccCC--CCceEEEEEccchHHHH
Confidence 99999999999999999999999999999999743333221 1146677999999999998 67999999998876555
Q ss_pred HH
Q 043190 240 LR 241 (1492)
Q Consensus 240 ~~ 241 (1492)
.+
T Consensus 153 ~~ 154 (175)
T 2rb4_A 153 MK 154 (175)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 93
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.76 E-value=5.2e-18 Score=207.06 Aligned_cols=182 Identities=24% Similarity=0.261 Sum_probs=125.6
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCC-cccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSS-YRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
.+++.|+++||||+++ ...++...... + ........ ..+-.+.+.+..... ...+...+... ... ..+
T Consensus 197 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~-----~~~-~~~ 266 (412)
T 3fht_A 197 LPRNCQMLLFSATFEDSVWKFAQKVVPD-P-NVIKLKREEETLDTIKQYYVLCSS--RDEKFQALCNL-----YGA-ITI 266 (412)
T ss_dssp SCTTCEEEEEESCCCHHHHHHHHHHSSS-C-EEECCCGGGSSCTTEEEEEEECSS--HHHHHHHHHHH-----HHH-HSS
T ss_pred CCCCceEEEEEeecCHHHHHHHHHhcCC-C-eEEeeccccccccCceEEEEEcCC--hHHHHHHHHHH-----Hhh-cCC
Confidence 3567899999999987 33455444433 1 12222222 222233333333222 12222222111 111 356
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+++||||+|++.++.+++.|.+. ..++++|||+|++++|..++
T Consensus 267 ~~~lvf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~~~ 309 (412)
T 3fht_A 267 AQAMIFCHTRKTASWLAAELSKE-------------------------------------GHQVALLSGEMMVEQRAAVI 309 (412)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCCEEECTTSCHHHHHHHH
T ss_pred CCEEEEeCCHHHHHHHHHHHHhC-------------------------------------CCeEEEecCCCCHHHHHHHH
Confidence 79999999999999999888643 33589999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
+.|++|.++|||||+++++|||+|++++||+...+.++. ...+..+|+||+|||||.| ..|.++++++..+
T Consensus 310 ~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~-~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~ 380 (412)
T 3fht_A 310 ERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD-GNPDNETYLHRIGRTGRFG--KRGLAVNMVDSKH 380 (412)
T ss_dssp HHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSS-SSBCHHHHHHHHTTSSCTT--CCEEEEEEECSHH
T ss_pred HHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCC-CCcchheeecccCcccCCC--CCceEEEEEcChh
Confidence 999999999999999999999999999999733222211 0124467999999999998 6799999998765
No 94
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.75 E-value=5.4e-18 Score=176.44 Aligned_cols=143 Identities=22% Similarity=0.356 Sum_probs=112.3
Q ss_pred cccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhH
Q 043190 44 PIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLS 123 (1492)
Q Consensus 44 pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 123 (1492)
+..+.+.++.+... .+...+.+++ .. .+++++||||++++.++.+++.|.+.
T Consensus 7 ~~~i~~~~~~~~~~---~K~~~L~~ll-----~~-~~~~~~lVF~~~~~~~~~l~~~L~~~------------------- 58 (163)
T 2hjv_A 7 TRNIEHAVIQVREE---NKFSLLKDVL-----MT-ENPDSCIIFCRTKEHVNQLTDELDDL------------------- 58 (163)
T ss_dssp CCCEEEEEEECCGG---GHHHHHHHHH-----HH-HCCSSEEEECSSHHHHHHHHHHHHHT-------------------
T ss_pred cccceEEEEECChH---HHHHHHHHHH-----Hh-cCCCcEEEEECCHHHHHHHHHHHHHc-------------------
Confidence 34566776665432 2222222222 11 35679999999999999999888642
Q ss_pred HHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCC
Q 043190 124 LIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGG 203 (1492)
Q Consensus 124 ~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~ 203 (1492)
...+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|+.++||. |++ +
T Consensus 59 ------------------~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~----~~~---p 113 (163)
T 2hjv_A 59 ------------------GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVIN----YDL---P 113 (163)
T ss_dssp ------------------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE----SSC---C
T ss_pred ------------------CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEEE----eCC---C
Confidence 235899999999999999999999999999999999999999999999996 554 3
Q ss_pred cccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 204 WRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 204 ~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
++..+|.||+|||||.| ..|.+++++...+...+.+
T Consensus 114 ~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~~~~ 149 (163)
T 2hjv_A 114 LEKESYVHRTGRTGRAG--NKGKAISFVTAFEKRFLAD 149 (163)
T ss_dssp SSHHHHHHHTTTSSCTT--CCEEEEEEECGGGHHHHHH
T ss_pred CCHHHHHHhccccCcCC--CCceEEEEecHHHHHHHHH
Confidence 46667999999999999 6799999999887665554
No 95
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.75 E-value=7.8e-18 Score=183.11 Aligned_cols=116 Identities=26% Similarity=0.378 Sum_probs=100.1
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||+|+++++.+++.|.+. +.++..+||+|++.+|.
T Consensus 29 ~~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~lhg~~~~~~r~ 71 (212)
T 3eaq_A 29 ASPDRAMVFTRTKAETEEIAQGLLRL-------------------------------------GHPAQALHGDLSQGERE 71 (212)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHH-------------------------------------TCCEEEECSSSCHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHc-------------------------------------CCCEEEEECCCCHHHHH
Confidence 45789999999999999999888653 33589999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
.+++.|++|.++|||||+++++|+|+|++++||+ |++. ++..+|.||+|||||.| ..|.|+++++..+...
T Consensus 72 ~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~----~~~p---~~~~~~~qr~GR~gR~g--~~g~~~~l~~~~~~~~ 142 (212)
T 3eaq_A 72 RVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRLP---DRAEAYQHRSGRTGRAG--RGGRVVLLYGPRERRD 142 (212)
T ss_dssp HHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE----SSCC---SSHHHHHHHHTTBCCCC----BEEEEEECGGGHHH
T ss_pred HHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE----CCCC---cCHHHHHHHhcccCCCC--CCCeEEEEEchhHHHH
Confidence 9999999999999999999999999999999996 5543 46677999999999999 6799999999887554
Q ss_pred HH
Q 043190 239 YL 240 (1492)
Q Consensus 239 ~~ 240 (1492)
+.
T Consensus 143 ~~ 144 (212)
T 3eaq_A 143 VE 144 (212)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 96
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.75 E-value=9.5e-18 Score=204.68 Aligned_cols=170 Identities=22% Similarity=0.275 Sum_probs=122.0
Q ss_pred CCcccEEEEcccCCC-hHHHHHhcCCCCCCceEe-ecCCc-ccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH-hc
Q 043190 5 QRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFF-FDSSY-RPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL-RQ 80 (1492)
Q Consensus 5 ~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~-~~~~~-rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 80 (1492)
+.+.|+++||||+|+ .++++..+..+ .+++ ++... ....+.+.+..+.... +.. .+.+.+ ..
T Consensus 234 ~~~~q~l~~SAT~~~~~~~~~~~~l~~---~~~i~~~~~~~~~~~i~~~~~~~~~~~---k~~--------~l~~~l~~~ 299 (434)
T 2db3_A 234 RPEHQTLMFSATFPEEIQRMAGEFLKN---YVFVAIGIVGGACSDVKQTIYEVNKYA---KRS--------KLIEILSEQ 299 (434)
T ss_dssp CSSCEEEEEESCCCHHHHHHHHTTCSS---CEEEEESSTTCCCTTEEEEEEECCGGG---HHH--------HHHHHHHHC
T ss_pred CCCceEEEEeccCCHHHHHHHHHhccC---CEEEEeccccccccccceEEEEeCcHH---HHH--------HHHHHHHhC
Confidence 567899999999986 44444433222 2221 22211 2223444444333211 111 111222 23
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
+.++||||+|++.|+.+++.|.+. ...+..+||++++.+|..+
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~-------------------------------------~~~~~~lhg~~~~~~R~~~ 342 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEK-------------------------------------EFPTTSIHGDRLQSQREQA 342 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEESTTSCHHHHHHH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhC-------------------------------------CCCEEEEeCCCCHHHHHHH
Confidence 445999999999999999888642 2348899999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
++.|++|+.+|||||+++++|+|+|++++||+ ||.. .+..+|+||+|||||.| ..|.|+++++++
T Consensus 343 l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~----~d~p---~~~~~y~qriGR~gR~g--~~G~a~~~~~~~ 407 (434)
T 2db3_A 343 LRDFKNGSMKVLIATSVASRGLDIKNIKHVIN----YDMP---SKIDDYVHRIGRTGRVG--NNGRATSFFDPE 407 (434)
T ss_dssp HHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE----SSCC---SSHHHHHHHHTTSSCTT--CCEEEEEEECTT
T ss_pred HHHHHcCCCcEEEEchhhhCCCCcccCCEEEE----ECCC---CCHHHHHHHhcccccCC--CCCEEEEEEecc
Confidence 99999999999999999999999999999997 6643 35667999999999999 679999999844
No 97
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.75 E-value=6.5e-18 Score=206.50 Aligned_cols=178 Identities=19% Similarity=0.230 Sum_probs=123.8
Q ss_pred cccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCC-cccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcE
Q 043190 7 MIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSS-YRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQA 84 (1492)
Q Consensus 7 ~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1492)
..|+++||||+|+ .++++..+... +. ....... ..+..+.+.+..+... .+...+ . .++.....++++
T Consensus 210 ~~~~i~~SAT~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~l----~-~~l~~~~~~~~~ 279 (417)
T 2i4i_A 210 VRHTMMFSATFPKEIQMLARDFLDE-YI-FLAVGRVGSTSENITQKVVWVEES---DKRSFL----L-DLLNATGKDSLT 279 (417)
T ss_dssp TBEEEEEESCCCHHHHHHHHHHCSS-CE-EEEEC----CCSSEEEEEEECCGG---GHHHHH----H-HHHHTCCTTCEE
T ss_pred CcEEEEEEEeCCHHHHHHHHHHcCC-CE-EEEeCCCCCCccCceEEEEEeccH---hHHHHH----H-HHHHhcCCCCeE
Confidence 6899999999986 44454443322 11 1112111 1222344444433321 111111 1 122222457789
Q ss_pred EEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHH
Q 043190 85 MVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLF 164 (1492)
Q Consensus 85 lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f 164 (1492)
||||+|+++++.+++.|.+. ..++..+||+|++++|..+++.|
T Consensus 280 lVf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~~~~~r~~~~~~f 322 (417)
T 2i4i_A 280 LVFVETKKGADSLEDFLYHE-------------------------------------GYACTSIHGDRSQRDREEALHQF 322 (417)
T ss_dssp EEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHC-------------------------------------CCCeeEecCCCCHHHHHHHHHHH
Confidence 99999999999999888642 23589999999999999999999
Q ss_pred hCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 165 SEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 165 ~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
++|..+|||||+++++|||+|++++||. |++. ++..+|+||+|||||.| ..|.|++++++.+...+.
T Consensus 323 ~~g~~~vlvaT~~~~~Gidip~v~~Vi~----~~~p---~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~ 389 (417)
T 2i4i_A 323 RSGKSPILVATAVAARGLDISNVKHVIN----FDLP---SDIEEYVHRIGRTGRVG--NLGLATSFFNERNINITK 389 (417)
T ss_dssp HHTSSCEEEECHHHHTTSCCCCEEEEEE----SSCC---SSHHHHHHHHTTBCC----CCEEEEEEECGGGGGGHH
T ss_pred HcCCCCEEEECChhhcCCCcccCCEEEE----EcCC---CCHHHHHHhcCccccCC--CCceEEEEEccccHHHHH
Confidence 9999999999999999999999999996 5543 35667999999999999 679999999887754433
No 98
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.74 E-value=1.1e-17 Score=203.74 Aligned_cols=181 Identities=20% Similarity=0.309 Sum_probs=127.3
Q ss_pred CCCcccEEEEcccCCChHHHHHhcCCCCCCceEe-e-cCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 4 TQRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFF-F-DSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~-~-~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
.+++.|++++|||+|+ ++.+++.......... + .....+..+.+.+..+.... .+...+.+ +... ...
T Consensus 207 ~~~~~~~i~~SAT~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~k~~~l~~-----~~~~-~~~ 276 (410)
T 2j0s_A 207 LPPATQVVLISATLPH--EILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREE--WKFDTLCD-----LYDT-LTI 276 (410)
T ss_dssp SCTTCEEEEEESCCCH--HHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTT--HHHHHHHH-----HHHH-HTS
T ss_pred CccCceEEEEEcCCCH--HHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHH--hHHHHHHH-----HHHh-cCC
Confidence 4567899999999986 3333332211112221 1 11222333444444443322 11122111 1122 245
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+++||||+|++.++.+++.|.+. ..++..+||+|++++|..++
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~h~~~~~~~r~~~~ 319 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA-------------------------------------NFTVSSMHGDMPQKERESIM 319 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCCEEECTTSCHHHHHHHH
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC-------------------------------------CCceEEeeCCCCHHHHHHHH
Confidence 68999999999999999888642 23488999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
+.|++|.++|||||+++++|+|+|++++||. |++. ++...|+||+|||||.| ..|.+++++++++...+.
T Consensus 320 ~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~----~~~p---~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~ 389 (410)
T 2j0s_A 320 KEFRSGASRVLISTDVWARGLDVPQVSLIIN----YDLP---NNRELYIHRIGRSGRYG--RKGVAINFVKNDDIRILR 389 (410)
T ss_dssp HHHHHTSSCEEEECGGGSSSCCCTTEEEEEE----SSCC---SSHHHHHHHHTTSSGGG--CCEEEEEEEEGGGHHHHH
T ss_pred HHHHCCCCCEEEECChhhCcCCcccCCEEEE----ECCC---CCHHHHHHhcccccCCC--CceEEEEEecHHHHHHHH
Confidence 9999999999999999999999999999996 5543 35667999999999998 679999999888755443
No 99
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.74 E-value=1.4e-17 Score=173.81 Aligned_cols=116 Identities=22% Similarity=0.359 Sum_probs=96.7
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+++++||||++++.++.++..|.+. ..+++.+||+|++.+|..
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~ 71 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND-------------------------------------KFTVSAIYSDLPQQERDT 71 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-------------------------------------CCCEEEEECCCCHHHHHH
Confidence 5679999999999999999888642 235899999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+++.|++|.++|||||+++++|+|+|+.++||. |++ +++..+|.||+|||||.| ..|.+++++++++...+
T Consensus 72 ~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~----~~~---p~~~~~~~qr~GR~gR~g--~~g~~~~~~~~~~~~~~ 142 (165)
T 1fuk_A 72 IMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDL---PANKENYIHRIGRGGRFG--RKGVAINFVTNEDVGAM 142 (165)
T ss_dssp HHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSC---CSSGGGGGGSSCSCC-------CEEEEEEETTTHHHH
T ss_pred HHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE----eCC---CCCHHHHHHHhcccccCC--CCceEEEEEcchHHHHH
Confidence 999999999999999999999999999999997 554 346677999999999999 77999999988876555
Q ss_pred HH
Q 043190 240 LR 241 (1492)
Q Consensus 240 ~~ 241 (1492)
.+
T Consensus 143 ~~ 144 (165)
T 1fuk_A 143 RE 144 (165)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 100
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.74 E-value=4.4e-18 Score=187.17 Aligned_cols=164 Identities=20% Similarity=0.287 Sum_probs=112.2
Q ss_pred CCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC----CCceEEEEcccHHHHHH-HHHHHHHHhhh
Q 043190 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ----SDMKVVYIAPLKAIVRE-RMNDWKDRLVS 760 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~----~~~~~l~i~P~r~La~q-~~~~~~~~~~~ 760 (1492)
...|+|+|.++++.++ .++++++.+|||+|||+++.++++..+... .+.+++|++|+++|+.| ..+.+.. +..
T Consensus 31 ~~~l~~~Q~~~i~~~~-~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~-~~~ 108 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPAL-EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP-FLK 108 (216)
T ss_dssp CCCCCHHHHHHHHHHH-TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH-HHT
T ss_pred CCCchHHHHHHHHHHh-cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH-Hhc
Confidence 3469999999999998 678999999999999999999998776532 36799999999999999 4445544 444
Q ss_pred ccCCEEEEEcCCCCcch---hccCCCcEEEECchhhhHhhhcccC----ccccCcccEEEEecccccCCCCccHHHHHHH
Q 043190 761 QLGKEMVEMTGDYTPDL---MALLSADIIISTPEKWDGISRNWHS----RNYVKKVGLMILDEIHLLGAERGPILEVIVS 833 (1492)
Q Consensus 761 ~~g~~v~~~~g~~~~~~---~~~~~~~Iiv~Tpe~l~~l~~~~~~----~~~l~~i~liViDEaH~l~~~~g~~~~~i~~ 833 (1492)
. +.++..++|+..... .....++|+|+||+++...+..... ...+.++++||+||||++... ..+..++.
T Consensus 109 ~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~--~~~~~~~~ 185 (216)
T 3b6e_A 109 K-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE--AVYNNIMR 185 (216)
T ss_dssp T-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC---------CHHHHHH
T ss_pred c-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC--CcHHHHHH
Confidence 3 678888888765432 1223589999999999877765432 134678999999999988532 23333333
Q ss_pred HHHHhh-h---------ccCCceEEEEEcCC
Q 043190 834 RMRYIS-S---------QTERAVRFIGLSTA 854 (1492)
Q Consensus 834 ~l~~~~-~---------~~~~~~~ii~lSAT 854 (1492)
++.... . .....+++++||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 321111 0 11257899999998
No 101
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.74 E-value=1.3e-17 Score=202.13 Aligned_cols=183 Identities=23% Similarity=0.270 Sum_probs=128.0
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.+++.|+++||||+++ ..+++.++... +..+........+..+.+.+..... ...+...+.. +... ..++
T Consensus 174 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~-----~~~~-~~~~ 244 (395)
T 3pey_A 174 LPKDTQLVLFSATFADAVRQYAKKIVPN-ANTLELQTNEVNVDAIKQLYMDCKN--EADKFDVLTE-----LYGL-MTIG 244 (395)
T ss_dssp SCTTCEEEEEESCCCHHHHHHHHHHSCS-CEEECCCGGGCSCTTEEEEEEECSS--HHHHHHHHHH-----HHTT-TTSS
T ss_pred CCCCcEEEEEEecCCHHHHHHHHHhCCC-CeEEEccccccccccccEEEEEcCc--hHHHHHHHHH-----HHHh-ccCC
Confidence 4567899999999987 46666666544 2222222222222233333333221 1222211111 1111 2467
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||++++.++.+++.|.+. ...+.+|||+|++++|..+++
T Consensus 245 ~~lvf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~~~~~~~~~r~~~~~ 287 (395)
T 3pey_A 245 SSIIFVATKKTANVLYGKLKSE-------------------------------------GHEVSILHGDLQTQERDRLID 287 (395)
T ss_dssp EEEEECSCHHHHHHHHHHHHHT-------------------------------------TCCCEEECTTSCHHHHHHHHH
T ss_pred CEEEEeCCHHHHHHHHHHHHhc-------------------------------------CCcEEEeCCCCCHHHHHHHHH
Confidence 9999999999999999888643 234899999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC---CcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG---GWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~---~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
.|++|+++|||||+++++|||+|+.++||. |++... ..+..+|.||+|||||.| ..|.++++++..+...
T Consensus 288 ~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~----~~~p~~~~~~~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~ 360 (395)
T 3pey_A 288 DFREGRSKVLITTNVLARGIDIPTVSMVVN----YDLPTLANGQADPATYIHRIGRTGRFG--RKGVAISFVHDKNSFN 360 (395)
T ss_dssp HHHTTSCCEEEECGGGSSSCCCTTEEEEEE----SSCCBCTTSSBCHHHHHHHHTTSSCTT--CCEEEEEEECSHHHHH
T ss_pred HHHCCCCCEEEECChhhcCCCcccCCEEEE----cCCCCCCcCCCCHHHhhHhccccccCC--CCceEEEEEechHHHH
Confidence 999999999999999999999999999996 443321 124567999999999999 6799999998765433
No 102
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=184.31 Aligned_cols=168 Identities=15% Similarity=0.158 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCC---CceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQS---DMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.++++|.++++.+. .+++++++||||||||+++.++++......+ +.++++++|+++|+.|+++.+...++...|.
T Consensus 61 p~~~~q~~~i~~i~-~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~ 139 (235)
T 3llm_A 61 PVKKFESEILEAIS-QNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGK 139 (235)
T ss_dssp GGGGGHHHHHHHHH-HCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTS
T ss_pred ChHHHHHHHHHHHh-cCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCc
Confidence 37899999999997 7899999999999999999999888654322 3489999999999999999988777655555
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCC
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTER 844 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~ 844 (1492)
.++..... .......+++|+|+||+++..++.. .+++++++|+||||.+ +...+.....++.+... .+
T Consensus 140 ~~g~~~~~--~~~~~~~~~~Ivv~Tpg~l~~~l~~-----~l~~~~~lVlDEah~~----~~~~~~~~~~l~~i~~~-~~ 207 (235)
T 3llm_A 140 SCGYSVRF--ESILPRPHASIMFCTVGVLLRKLEA-----GIRGISHVIVDEIHER----DINTDFLLVVLRDVVQA-YP 207 (235)
T ss_dssp SEEEEETT--EEECCCSSSEEEEEEHHHHHHHHHH-----CCTTCCEEEECCTTSC----CHHHHHHHHHHHHHHHH-CT
T ss_pred eEEEeech--hhccCCCCCeEEEECHHHHHHHHHh-----hhcCCcEEEEECCccC----CcchHHHHHHHHHHHhh-CC
Confidence 55542211 1111124689999999998777764 2789999999999953 23333333344443332 24
Q ss_pred ceEEEEEcCCCCChHHHHHHhcCCc
Q 043190 845 AVRFIGLSTALANAGDLADWLGVGE 869 (1492)
Q Consensus 845 ~~~ii~lSATl~~~~~~~~~l~~~~ 869 (1492)
+.|++++|||+++.. +++|++..+
T Consensus 208 ~~~~il~SAT~~~~~-~~~~~~~~p 231 (235)
T 3llm_A 208 EVRIVLMSATIDTSM-FCEYFFNCP 231 (235)
T ss_dssp TSEEEEEECSSCCHH-HHHHTTSCC
T ss_pred CCeEEEEecCCCHHH-HHHHcCCCC
Confidence 789999999998755 899987543
No 103
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=2.2e-17 Score=174.18 Aligned_cols=130 Identities=21% Similarity=0.315 Sum_probs=104.3
Q ss_pred HHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHH
Q 043190 910 AICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKD 989 (1492)
Q Consensus 910 ~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 989 (1492)
.+....+.+++||||++++.++.++..|.. .+.++..+||+|++.+
T Consensus 27 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~~g~~~~~~ 72 (175)
T 2rb4_A 27 NIYGSITIGQAIIFCQTRRNAKWLTVEMIQ----------------------------------DGHQVSLLSGELTVEQ 72 (175)
T ss_dssp HHHTTSCCSEEEEECSCHHHHHHHHHHHHT----------------------------------TTCCEEEECSSCCHHH
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHHH----------------------------------cCCcEEEEeCCCCHHH
Confidence 333444678999999999999999887732 2567999999999999
Q ss_pred HHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 990 RSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 990 R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
|..+++.|++|+++|||||+++++|+|+|++++||+ |+.+.....+.+..+|+||+|||||.| ..|.|++++.+
T Consensus 73 R~~~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~----~d~p~~~~~~~~~~~~~qr~GR~gR~g--~~g~~~~~~~~ 146 (175)
T 2rb4_A 73 RASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVN----FDLPVKQGEEPDYETYLHRIGRTGRFG--KKGLAFNMIEV 146 (175)
T ss_dssp HHHHHHHHHTTSCSEEEECCSCCTTTCCTTEEEEEE----SSCCC--CCSCCHHHHHHHHCBC------CCEEEEEEECG
T ss_pred HHHHHHHHHcCCCeEEEEecchhcCCCcccCCEEEE----eCCCCCccccCCHHHHHHHhcccccCC--CCceEEEEEcc
Confidence 999999999999999999999999999999999997 554322112357899999999999987 78999999998
Q ss_pred CcHHHHHHhh
Q 043190 1070 PKKSFYKKFL 1079 (1492)
Q Consensus 1070 ~~~~~~~~~l 1079 (1492)
.+...+.++.
T Consensus 147 ~~~~~~~~i~ 156 (175)
T 2rb4_A 147 DELPSLMKIQ 156 (175)
T ss_dssp GGHHHHHHHH
T ss_pred chHHHHHHHH
Confidence 8876655543
No 104
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.73 E-value=6.2e-18 Score=177.36 Aligned_cols=110 Identities=25% Similarity=0.313 Sum_probs=97.3
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+++++||||++++.++.+++.|.+. ..+++.+||+|++.+|..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~hg~~~~~~r~~ 72 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ-------------------------------------NFPAIAIHRGMPQEERLS 72 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc-------------------------------------CCCEEEEECCCCHHHHHH
Confidence 5679999999999999999888642 235899999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
+++.|++|.++|||||+++++|+|+|+.++||+ ||++ ++...|.||+|||||.| ..|.+++++++.+
T Consensus 73 ~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~----~d~p---~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~ 139 (172)
T 1t5i_A 73 RYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMP---EDSDTYLHRVARAGRFG--TKGLAITFVSDEN 139 (172)
T ss_dssp HHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSCC---SSHHHHHHHHHHHTGGG--CCCEEEEEECSHH
T ss_pred HHHHHHCCCCcEEEECCchhcCcchhhCCEEEE----ECCC---CCHHHHHHHhcccccCC--CCcEEEEEEcChh
Confidence 999999999999999999999999999999996 6543 46667999999999999 6799999998754
No 105
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.73 E-value=4.9e-17 Score=197.42 Aligned_cols=180 Identities=23% Similarity=0.282 Sum_probs=127.7
Q ss_pred CCCcccEEEEcccCCC-h-HHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 4 TQRMIRIVGLSATLPN-Y-LEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~-~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
.++..|+++||||+|. . +.+..++... ..+ ..........+.+.+...... .+...+. .+... ..+
T Consensus 191 ~~~~~~~i~lSAT~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~---~k~~~l~-----~~~~~-~~~ 258 (400)
T 1s2m_A 191 LPPTHQSLLFSATFPLTVKEFMVKHLHKP--YEI-NLMEELTLKGITQYYAFVEER---QKLHCLN-----TLFSK-LQI 258 (400)
T ss_dssp SCSSCEEEEEESCCCHHHHHHHHHHCSSC--EEE-SCCSSCBCTTEEEEEEECCGG---GHHHHHH-----HHHHH-SCC
T ss_pred CCcCceEEEEEecCCHHHHHHHHHHcCCC--eEE-EeccccccCCceeEEEEechh---hHHHHHH-----HHHhh-cCC
Confidence 4567899999999986 2 2234444322 111 112222222343333332221 1111111 11222 356
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+++||||++++.++.+++.|.+. ..++.++||+|++++|..++
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~~~ 301 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDL-------------------------------------GYSCYYSHARMKQQERNKVF 301 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHH-------------------------------------TCCEEEECTTSCHHHHHHHH
T ss_pred CcEEEEEecHHHHHHHHHHHHhc-------------------------------------CCCeEEecCCCCHHHHHHHH
Confidence 79999999999999999888653 33589999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
+.|++|.++|||||+++++|+|+|+.++||. |++. ++..+|+||+|||||.| ..|.|+++++.++...+.+
T Consensus 302 ~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~----~~~p---~s~~~~~Qr~GR~gR~g--~~g~~~~l~~~~~~~~~~~ 372 (400)
T 1s2m_A 302 HEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN----FDFP---KTAETYLHRIGRSGRFG--HLGLAINLINWNDRFNLYK 372 (400)
T ss_dssp HHHHTTSSSEEEESSCSSSSCCCTTEEEEEE----SSCC---SSHHHHHHHHCBSSCTT--CCEEEEEEECGGGHHHHHH
T ss_pred HHHhcCCCcEEEEcCccccCCCccCCCEEEE----eCCC---CCHHHHHHhcchhcCCC--CCceEEEEeccchHHHHHH
Confidence 9999999999999999999999999999996 5543 35667999999999999 6799999999887655443
No 106
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.72 E-value=6.1e-19 Score=219.16 Aligned_cols=188 Identities=24% Similarity=0.243 Sum_probs=20.5
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.++++|+|++|||+++ ...++...... +..+..-.....+..+.+.++.+.... .+...+... ... ..++
T Consensus 264 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~-----~~~-~~~~ 334 (479)
T 3fmp_B 264 LPRNCQMLLFSATFEDSVWKFAQKVVPD-PNVIKLKREEETLDTIKQYYVLCSSRD--EKFQALCNL-----YGA-ITIA 334 (479)
T ss_dssp SCTTSEEEEEESCCCHHHHHHHHHHSSS-EEEEEEC--------------------------------------------
T ss_pred CCccceEEEEeCCCCHHHHHHHHHHcCC-CeEEeccccccCcCCceEEEEEeCCHH--HHHHHHHHH-----Hhh-ccCC
Confidence 4668999999999987 44555554433 111111111122222333332222111 111111111 111 2457
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||+|++.|+.++..|.+. ..++++|||+|++.+|..+++
T Consensus 335 ~~lvF~~s~~~~~~l~~~L~~~-------------------------------------~~~v~~lh~~~~~~~R~~~~~ 377 (479)
T 3fmp_B 335 QAMIFCHTRKTASWLAAELSKE-------------------------------------GHQVALLSGEMMVEQRAAVIE 377 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEeCcHHHHHHHHHHHHhC-------------------------------------CccEEEecCCCCHHHHHHHHH
Confidence 8999999999999998877643 235899999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
.|++|.++|||||+++++|+|+|++++||+...+.++. +..+..+|.||+|||||.| ..|.|+++++..+...+.
T Consensus 378 ~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~-~~~s~~~~~Qr~GRagR~g--~~G~~i~~~~~~~~~~~~ 452 (479)
T 3fmp_B 378 RFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD-GNPDNETYLHRIGRTGRFG--KRGLAVNMVDSKHSMNIL 452 (479)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCc-cCCCHHHHHHHhcccccCC--CCceEEEEEcCcchHHHH
Confidence 99999999999999999999999999999733222211 0124567999999999998 779999999876544443
No 107
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.72 E-value=4.1e-16 Score=195.48 Aligned_cols=342 Identities=20% Similarity=0.191 Sum_probs=203.2
Q ss_pred CCCHHHHHHHHhh---hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHIL---YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~---~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.++|.|.+++..+ +..++++++.||||+|||++|++|++.. +.+++|++||++|+.|+.+++.. +....+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----~~~v~i~~pt~~l~~q~~~~~~~-l~~~~~~ 76 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----KPKVLFVVRTHNEFYPIYRDLTK-IREKRNI 76 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----CSEEEEEESSGGGHHHHHHHHTT-CCCSSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----CCeEEEEcCCHHHHHHHHHHHHH-HhhhcCc
Confidence 4899999977654 3478999999999999999999999983 78999999999999999887765 4444477
Q ss_pred EEEEEcCCCC----c------------------------------c--------------------hhccCCCcEEEECc
Q 043190 765 EMVEMTGDYT----P------------------------------D--------------------LMALLSADIIISTP 790 (1492)
Q Consensus 765 ~v~~~~g~~~----~------------------------------~--------------------~~~~~~~~Iiv~Tp 790 (1492)
++..+.|... . . ......++|+|+|+
T Consensus 77 ~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~ 156 (551)
T 3crv_A 77 TFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTY 156 (551)
T ss_dssp CEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEET
T ss_pred cEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCc
Confidence 8887777211 0 0 01123689999999
Q ss_pred hhhhHh-hhcccCccccCcccEEEEecccccCCCCc--------------------------------------------
Q 043190 791 EKWDGI-SRNWHSRNYVKKVGLMILDEIHLLGAERG-------------------------------------------- 825 (1492)
Q Consensus 791 e~l~~l-~~~~~~~~~l~~i~liViDEaH~l~~~~g-------------------------------------------- 825 (1492)
..+..- .+.. ........++||||||.+.+-+.
T Consensus 157 ~~l~~~~~~~~--~~~~~~~~~vIiDEAHnl~d~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~~~~~ 234 (551)
T 3crv_A 157 PYFFIDRYREF--IDIDLREYMIVIDEAHNLDKVNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLPDEKY 234 (551)
T ss_dssp HHHHCHHHHTT--SCCCSTTEEEEETTGGGGGGGGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCSCSSC
T ss_pred hHhcCHHHHHh--cCCCcCCeEEEEecccchHHHHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 987443 3332 11234678999999997643000
Q ss_pred -----------cHHHHHHHH-------------------------HHHhhh------------------------ccCCc
Q 043190 826 -----------PILEVIVSR-------------------------MRYISS------------------------QTERA 845 (1492)
Q Consensus 826 -----------~~~~~i~~~-------------------------l~~~~~------------------------~~~~~ 845 (1492)
..+..+... +..+.. .....
T Consensus 235 ~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~~~~~ 314 (551)
T 3crv_A 235 IKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNLLNDN 314 (551)
T ss_dssp EECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGGGGCT
T ss_pred cccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHHHhcc
Confidence 000011100 000000 01123
Q ss_pred -eEEEEEcCCCCChHHHHHHhcCCcce-----eEecCCCccccCcEEEEe-ccCCccccccccccChhHHHHHhh--cCC
Q 043190 846 -VRFIGLSTALANAGDLADWLGVGEIG-----LFNFKPSVRPVPLEVHIQ-GYPGKFYCPRMNSMNKPAYAAICT--HSP 916 (1492)
Q Consensus 846 -~~ii~lSATl~~~~~~~~~l~~~~~~-----~~~~~~~~r~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 916 (1492)
..+|++|||+...+.+.+.+|..... .+.+.+.+ +-.....+. ..+.. +..+.......+...+.. ...
T Consensus 315 ~~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf-~~~~~l~v~~~~~~~-~~~r~~~~~~~l~~~i~~l~~~~ 392 (551)
T 3crv_A 315 ELSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRV-SGSYECYIGVDVTSK-YDMRSDNMWKRYADYLLKIYFQA 392 (551)
T ss_dssp TCEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCC-SCEEEEEEECSCCCC-TTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcC-CCceEEEEeCCCCCc-cccCCHHHHHHHHHHHHHHHHhC
Confidence 68999999999888889999986322 22233333 222222221 11111 111111111112222211 123
Q ss_pred CCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHH
Q 043190 917 TKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL 996 (1492)
Q Consensus 917 ~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 996 (1492)
++.+|||++|.+..+.++.. .+..+..-..+++ +..+.+.
T Consensus 393 ~g~~lvlF~Sy~~l~~v~~~-------------------------------------~~~~v~~q~~~~~---~~~~~~~ 432 (551)
T 3crv_A 393 KANVLVVFPSYEIMDRVMSR-------------------------------------ISLPKYVESEDSS---VEDLYSA 432 (551)
T ss_dssp SSEEEEEESCHHHHHHHHTT-------------------------------------CCSSEEECCSSCC---HHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHh-------------------------------------cCCcEEEcCCCCC---HHHHHHH
Confidence 56899999999887776631 1223333333444 3556777
Q ss_pred HhcCCceEEEec--cccccccCCC---C---cEEEEecceeeeC-------------ccC--cc---ccCC-HHHHHHhh
Q 043190 997 FANNKIQVLVCT--STLAWGVNLP---A---HLVIIKGTEYYDG-------------KTK--RY---VDFP-ITDILQMM 1049 (1492)
Q Consensus 997 f~~g~~~vLvaT--~~l~~Gvdip---~---~~~VI~~~~~~~~-------------~~~--~~---~~~~-~~~~~Qr~ 1049 (1492)
|+.+.-.||+|| ..+.+|||+| + ..+||.|-++-.+ ..+ .+ +.+| ...+.|-+
T Consensus 433 ~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~ 512 (551)
T 3crv_A 433 ISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAI 512 (551)
T ss_dssp TTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHH
T ss_pred HHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHh
Confidence 754344899998 6999999999 4 3456655443222 111 22 2223 45788999
Q ss_pred cccCCCCCCCceEEEEEecCCcHHHHHHhhc
Q 043190 1050 GRAGRPQYDQHGKAVILVHEPKKSFYKKFLY 1080 (1492)
Q Consensus 1050 GRagR~g~~~~G~~i~l~~~~~~~~~~~~l~ 1080 (1492)
||+-|.. ++.|..+++-..-....|.+.+.
T Consensus 513 GRlIR~~-~D~G~v~llD~R~~~~~~~~~~~ 542 (551)
T 3crv_A 513 GRAIRDV-NDKCNVWLLDKRFESLYWKKNLK 542 (551)
T ss_dssp HTTCCST-TCEEEEEEESGGGGSHHHHHHTT
T ss_pred ccCccCC-CccEEEEEeehhcccchhhhhce
Confidence 9999964 45787776654444455655544
No 108
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.72 E-value=4.2e-17 Score=169.67 Aligned_cols=120 Identities=23% Similarity=0.360 Sum_probs=104.9
Q ss_pred cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHH
Q 043190 914 HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLV 993 (1492)
Q Consensus 914 ~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 993 (1492)
..+++++||||++++.++.++..|.. .+..+..+||+|++.+|..+
T Consensus 32 ~~~~~~~lVF~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~hg~~~~~~r~~~ 77 (163)
T 2hjv_A 32 TENPDSCIIFCRTKEHVNQLTDELDD----------------------------------LGYPCDKIHGGMIQEDRFDV 77 (163)
T ss_dssp HHCCSSEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTSCHHHHHHH
T ss_pred hcCCCcEEEEECCHHHHHHHHHHHHH----------------------------------cCCcEEEEeCCCCHHHHHHH
Confidence 34567999999999999999887733 25789999999999999999
Q ss_pred HHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHH
Q 043190 994 EELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKS 1073 (1492)
Q Consensus 994 ~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~ 1073 (1492)
++.|++|+++|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| ..|.+++++.+.+..
T Consensus 78 ~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~----~~~------p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~ 145 (163)
T 2hjv_A 78 MNEFKRGEYRYLVATDVAARGIDIENISLVIN----YDL------PLEKESYVHRTGRTGRAG--NKGKAISFVTAFEKR 145 (163)
T ss_dssp HHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE----SSC------CSSHHHHHHHTTTSSCTT--CCEEEEEEECGGGHH
T ss_pred HHHHHcCCCeEEEECChhhcCCchhcCCEEEE----eCC------CCCHHHHHHhccccCcCC--CCceEEEEecHHHHH
Confidence 99999999999999999999999999999998 442 346899999999999987 789999999988877
Q ss_pred HHHHhh
Q 043190 1074 FYKKFL 1079 (1492)
Q Consensus 1074 ~~~~~l 1079 (1492)
.+.++.
T Consensus 146 ~~~~i~ 151 (163)
T 2hjv_A 146 FLADIE 151 (163)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 109
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.72 E-value=4.8e-17 Score=196.94 Aligned_cols=178 Identities=24% Similarity=0.299 Sum_probs=126.2
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCc--ccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhc
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSY--RPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQ 80 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~--rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (1492)
.+...|++++|||+++ ..++....... +..++ +.... ....+.+.+....... +...+.+ ++.. ..
T Consensus 181 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~-----~l~~-~~ 249 (391)
T 1xti_A 181 TPHEKQVMMFSATLSKEIRPVCRKFMQD-PMEIF-VDDETKLTLHGLQQYYVKLKDNE---KNRKLFD-----LLDV-LE 249 (391)
T ss_dssp SCSSSEEEEEESSCCSTHHHHHHHHCSS-CEEEE-CCCCCCCCCTTCEEEEEECCGGG---HHHHHHH-----HHHH-SC
T ss_pred CCCCceEEEEEeeCCHHHHHHHHHHcCC-CeEEE-ecCccccCcccceEEEEEcCchh---HHHHHHH-----HHHh-cC
Confidence 4567899999999987 34444433322 22222 22222 2233444444333221 1111111 1111 35
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
++++||||++++.++.+++.|.+. ...+..+||+|++++|..+
T Consensus 250 ~~~~lvf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~~ 292 (391)
T 1xti_A 250 FNQVVIFVKSVQRCIALAQLLVEQ-------------------------------------NFPAIAIHRGMPQEERLSR 292 (391)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHHT-------------------------------------TCCEEEECTTSCHHHHHHH
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhC-------------------------------------CCcEEEEeCCCCHHHHHHH
Confidence 789999999999999999888643 2248899999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
++.|++|..+|||||+++++|+|+|+.++||. |++. ++..+|.||+|||||.| ..|.+++++++.+...
T Consensus 293 ~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~----~~~p---~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~ 361 (391)
T 1xti_A 293 YQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDMP---EDSDTYLHRVARAGRFG--TKGLAITFVSDENDAK 361 (391)
T ss_dssp HHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE----SSCC---SSHHHHHHHHCBCSSSC--CCCEEEEEECSHHHHH
T ss_pred HHHHhcCCCcEEEECChhhcCCCcccCCEEEE----eCCC---CCHHHHHHhcccccCCC--CceEEEEEEcccchHH
Confidence 99999999999999999999999999999996 5543 36667999999999998 6799999998765433
No 110
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.72 E-value=1.5e-16 Score=198.44 Aligned_cols=126 Identities=21% Similarity=0.159 Sum_probs=86.6
Q ss_pred CCCCCCHHHHHHHHhh---hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 685 NFSHFNPIQTQIFHIL---YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~---~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
|| .|+|+|.+++..+ +..++++++.||||+|||++|++|++.. +.+++|++||++|+.|+++++.. +
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----~~~~~~~~~t~~l~~q~~~~~~~-l--- 74 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----KKKVLIFTRTHSQLDSIYKNAKL-L--- 74 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----TCEEEEEESCHHHHHHHHHHHGG-G---
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----CCcEEEEcCCHHHHHHHHHHHHh-c---
Confidence 66 6999999987643 3478899999999999999999998764 68999999999999999877654 2
Q ss_pred cCCEEEEEcCCCC--------------------------------------------------cchhccCCCcEEEECch
Q 043190 762 LGKEMVEMTGDYT--------------------------------------------------PDLMALLSADIIISTPE 791 (1492)
Q Consensus 762 ~g~~v~~~~g~~~--------------------------------------------------~~~~~~~~~~Iiv~Tpe 791 (1492)
+.++..+.|... ........++|+|+|+.
T Consensus 75 -~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV~n~~ 153 (540)
T 2vl7_A 75 -GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIAMTYP 153 (540)
T ss_dssp -TCCEEEC---------------------------------------------------------CTTGGGCSEEEEETH
T ss_pred -CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEEEChH
Confidence 445554443210 00111236799999999
Q ss_pred hhhH-hhhcccC----ccccCcccEEEEecccccC
Q 043190 792 KWDG-ISRNWHS----RNYVKKVGLMILDEIHLLG 821 (1492)
Q Consensus 792 ~l~~-l~~~~~~----~~~l~~i~liViDEaH~l~ 821 (1492)
.+.. ..++... ...+....++||||||.+.
T Consensus 154 ~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 154 YLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp HHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred HhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 8643 3332111 1135678899999999883
No 111
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.72 E-value=9.6e-18 Score=204.78 Aligned_cols=184 Identities=23% Similarity=0.335 Sum_probs=114.5
Q ss_pred CCCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 3 STQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 3 ~~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
..+++.|+|+||||+|+ ..++...+... +..+........+..+.+.+....... .+...+.. +.+. ..+
T Consensus 210 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~-----~~~~-~~~ 280 (414)
T 3eiq_A 210 KLNSNTQVVLLSATMPSDVLEVTKKFMRD-PIRILVKKEELTLEGIRQFYINVEREE--WKLDTLCD-----LYET-LTI 280 (414)
T ss_dssp TSCTTCEEEEECSCCCHHHHHHHTTTCSS-CEEECCCCCCCCTTSCCEEEEECSSST--THHHHHHH-----HHHS-SCC
T ss_pred hCCCCCeEEEEEEecCHHHHHHHHHHcCC-CEEEEecCCccCCCCceEEEEEeChHH--hHHHHHHH-----HHHh-CCC
Confidence 34678999999999976 33344433322 111111122223333444444333221 11111111 1111 245
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+++||||+++++++.+++.|.+. ..+++.+||+|++++|..++
T Consensus 281 ~~~lvf~~~~~~~~~l~~~l~~~-------------------------------------~~~~~~~h~~~~~~~r~~~~ 323 (414)
T 3eiq_A 281 TQAVIFINTRRKVDWLTEKMHAR-------------------------------------DFTVSAMHGDMDQKERDVIM 323 (414)
T ss_dssp SSCEEECSCHHHHHHHHHHHHTT-------------------------------------TCCCEEC---CHHHHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHhc-------------------------------------CCeEEEecCCCCHHHHHHHH
Confidence 78999999999999998877542 33589999999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
+.|++|.++|||||+++++|||+|++++||. |++. ++..+|.||+|||||.| ..|.|+++++.++...+.+
T Consensus 324 ~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~----~~~p---~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~~~~~~~~ 394 (414)
T 3eiq_A 324 REFRSGSSRVLITTDLLARGIDVQQVSLVIN----YDLP---TNRENYIHRIGRGGRFG--RKGVAINMVTEEDKRTLRD 394 (414)
T ss_dssp HHHSCC---CEEECSSCC--CCGGGCSCEEE----SSCC---SSTHHHHHHSCCC---------CEEEEECSTHHHHHHH
T ss_pred HHHHcCCCcEEEECCccccCCCccCCCEEEE----eCCC---CCHHHhhhhcCcccCCC--CCceEEEEEcHHHHHHHHH
Confidence 9999999999999999999999999999996 5543 35567999999999998 6799999999887665543
No 112
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.71 E-value=4.1e-17 Score=177.42 Aligned_cols=122 Identities=20% Similarity=0.325 Sum_probs=103.8
Q ss_pred HhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHH
Q 043190 911 ICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDR 990 (1492)
Q Consensus 911 l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 990 (1492)
+....+++++||||+++..++.++..|.. .+..+..+||+|++.+|
T Consensus 25 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~----------------------------------~~~~~~~lhg~~~~~~r 70 (212)
T 3eaq_A 25 LLYVASPDRAMVFTRTKAETEEIAQGLLR----------------------------------LGHPAQALHGDLSQGER 70 (212)
T ss_dssp HHHHHCCSCEEEECSSHHHHHHHHHHHHH----------------------------------HTCCEEEECSSSCHHHH
T ss_pred HHHhCCCCeEEEEeCCHHHHHHHHHHHHH----------------------------------cCCCEEEEECCCCHHHH
Confidence 33344578999999999999999887743 26789999999999999
Q ss_pred HHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 991 SLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 991 ~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
..+++.|++|+++|||||+++++|+|+|++++||+ |+. +.+..+|+||+|||||.| ..|.|++++++.
T Consensus 71 ~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi~----~~~------p~~~~~~~qr~GR~gR~g--~~g~~~~l~~~~ 138 (212)
T 3eaq_A 71 ERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRL------PDRAEAYQHRSGRTGRAG--RGGRVVLLYGPR 138 (212)
T ss_dssp HHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEEE----SSC------CSSHHHHHHHHTTBCCCC----BEEEEEECGG
T ss_pred HHHHHHHHCCCCeEEEecChhhcCCCCccCcEEEE----CCC------CcCHHHHHHHhcccCCCC--CCCeEEEEEchh
Confidence 99999999999999999999999999999999997 442 336899999999999988 789999999988
Q ss_pred cHHHHHHh
Q 043190 1071 KKSFYKKF 1078 (1492)
Q Consensus 1071 ~~~~~~~~ 1078 (1492)
+...+..+
T Consensus 139 ~~~~~~~i 146 (212)
T 3eaq_A 139 ERRDVEAL 146 (212)
T ss_dssp GHHHHHHH
T ss_pred HHHHHHHH
Confidence 76665544
No 113
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.71 E-value=5e-17 Score=186.25 Aligned_cols=153 Identities=18% Similarity=0.235 Sum_probs=116.0
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV 767 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~ 767 (1492)
.|+|+|.++++.++. +++.++++|||+|||+++..++...+.. ..++++|++|+++|+.|..+++.+.. ...+..+.
T Consensus 113 ~l~~~Q~~ai~~~l~-~~~~ll~~~tGsGKT~~~~~~~~~~~~~-~~~~~lil~Pt~~L~~q~~~~l~~~~-~~~~~~~~ 189 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV-NRRRILNLPTSAGRSLIQALLARYYLEN-YEGKILIIVPTTALTTQMADDFVDYR-LFSHAMIK 189 (282)
T ss_dssp CCCHHHHHHHHHHHH-HSEEEECCCTTSCHHHHHHHHHHHHHHH-CSSEEEEECSSHHHHHHHHHHHHHHT-SCCGGGEE
T ss_pred CccHHHHHHHHHHHh-cCCeEEEcCCCCCcHHHHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhc-ccccceEE
Confidence 699999999999884 4778899999999999998888876654 24599999999999999999998743 32245677
Q ss_pred EEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceE
Q 043190 768 EMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVR 847 (1492)
Q Consensus 768 ~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ 847 (1492)
.+.|+..........++|+|+||+.+. +. ....+.+++++|+||||++.. ..++.++. ......+
T Consensus 190 ~~~~~~~~~~~~~~~~~I~v~T~~~l~---~~--~~~~~~~~~~vIiDEaH~~~~---~~~~~il~-------~~~~~~~ 254 (282)
T 1rif_A 190 KIGGGASKDDKYKNDAPVVVGTWQTVV---KQ--PKEWFSQFGMMMNDECHLATG---KSISSIIS-------GLNNCMF 254 (282)
T ss_dssp ECSTTCSSTTCCCTTCSEEEECHHHHT---TS--CGGGGGGEEEEEEETGGGCCH---HHHHHHTT-------TCTTCCE
T ss_pred EEeCCCcchhhhccCCcEEEEchHHHH---hh--HHHHHhhCCEEEEECCccCCc---ccHHHHHH-------HhhcCCe
Confidence 777765544334457899999998653 22 223467899999999998852 23333332 3334789
Q ss_pred EEEEcCCCCCh
Q 043190 848 FIGLSTALANA 858 (1492)
Q Consensus 848 ii~lSATl~~~ 858 (1492)
++++|||+++.
T Consensus 255 ~l~lSATp~~~ 265 (282)
T 1rif_A 255 KFGLSGSLRDG 265 (282)
T ss_dssp EEEECSSCCTT
T ss_pred EEEEeCCCCCc
Confidence 99999999874
No 114
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.71 E-value=4e-17 Score=185.55 Aligned_cols=115 Identities=27% Similarity=0.389 Sum_probs=95.9
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++||||+|+++++.+++.|.+. ..++..+||+|++.+|..
T Consensus 27 ~~~~~LVF~~t~~~~~~l~~~L~~~-------------------------------------g~~~~~lhg~l~~~~r~~ 69 (300)
T 3i32_A 27 SPDRAMVFTRTKAETEEIAQGLLRL-------------------------------------GHPAQALHGDMSQGERER 69 (300)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHTT-------------------------------------TCCEEEECSCCCTHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC-------------------------------------CCCEEEEeCCCCHHHHHH
Confidence 4789999999999999998877532 345899999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+++.|++|.++|||||+++++|||+|++++||+ |+.. ++..+|.||+|||||.| ..|.|+++++..+...+
T Consensus 70 ~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~----~d~p---~s~~~y~Qr~GRagR~g--~~G~~i~l~~~~e~~~~ 140 (300)
T 3i32_A 70 VMGAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRMP---DRAEAYQHRSGRTGRAG--RGGRVVLLYGPRERRDV 140 (300)
T ss_dssp HHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE----SSCC---SSTTHHHHHHTCCC-------CEEEEEECSSTHHHH
T ss_pred HHHHhhcCCceEEEEechhhcCccccceeEEEE----cCCC---CCHHHHHHHccCcCcCC--CCceEEEEeChHHHHHH
Confidence 999999999999999999999999999999997 5432 35667999999999999 67999999998875544
Q ss_pred H
Q 043190 240 L 240 (1492)
Q Consensus 240 ~ 240 (1492)
.
T Consensus 141 ~ 141 (300)
T 3i32_A 141 E 141 (300)
T ss_dssp H
T ss_pred H
Confidence 4
No 115
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.70 E-value=3.1e-17 Score=173.97 Aligned_cols=116 Identities=22% Similarity=0.253 Sum_probs=86.1
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
.+++++||||++++.++.+++.|... +.+++.+||+|++.+|.
T Consensus 44 ~~~~k~lVF~~~~~~~~~l~~~L~~~-------------------------------------g~~~~~lhg~~~~~~r~ 86 (185)
T 2jgn_A 44 GKDSLTLVFVETKKGADSLEDFLYHE-------------------------------------GYACTSIHGDRSQRDRE 86 (185)
T ss_dssp -CCSCEEEEESCHHHHHHHHHHHHHT-------------------------------------TCCEEEEC--------C
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHc-------------------------------------CCceEEEeCCCCHHHHH
Confidence 35789999999999999999887642 23589999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
.+++.|++|.++|||||+++++|+|+|+.++||. ||+. ++..+|.||+|||||.| ..|.|+++++..+...
T Consensus 87 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~----~d~p---~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~ 157 (185)
T 2jgn_A 87 EALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDLP---SDIEEYVHRIGRTGRVG--NLGLATSFFNERNINI 157 (185)
T ss_dssp HHHHHHHHTSSSEEEEEC------CCCSBSEEEE----SSCC---SSHHHHHHHHTTBCCTT--SCEEEEEEECGGGGGG
T ss_pred HHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE----eCCC---CCHHHHHHHccccCCCC--CCcEEEEEEchhhHHH
Confidence 9999999999999999999999999999999996 6543 46677999999999999 6799999998777544
Q ss_pred HH
Q 043190 239 YL 240 (1492)
Q Consensus 239 ~~ 240 (1492)
+.
T Consensus 158 ~~ 159 (185)
T 2jgn_A 158 TK 159 (185)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 116
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.70 E-value=4.6e-17 Score=169.84 Aligned_cols=123 Identities=20% Similarity=0.344 Sum_probs=101.3
Q ss_pred HHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHH
Q 043190 910 AICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKD 989 (1492)
Q Consensus 910 ~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~ 989 (1492)
.+....+++++||||++++.++.++..|.. .+..+..+||++++.+
T Consensus 23 ~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~~~~~~~~~ 68 (165)
T 1fuk_A 23 DLYDSISVTQAVIFCNTRRKVEELTTKLRN----------------------------------DKFTVSAIYSDLPQQE 68 (165)
T ss_dssp HHHHHTTCSCEEEEESSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTSCHHH
T ss_pred HHHHhCCCCCEEEEECCHHHHHHHHHHHHH----------------------------------cCCCEEEEECCCCHHH
Confidence 333444678999999999999999887743 2567999999999999
Q ss_pred HHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecC
Q 043190 990 RSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHE 1069 (1492)
Q Consensus 990 R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~ 1069 (1492)
|..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|.||+||+||.| ..|.|++++.+
T Consensus 69 r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~----~~~------p~~~~~~~qr~GR~gR~g--~~g~~~~~~~~ 136 (165)
T 1fuk_A 69 RDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDL------PANKENYIHRIGRGGRFG--RKGVAINFVTN 136 (165)
T ss_dssp HHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE----SSC------CSSGGGGGGSSCSCC-------CEEEEEEET
T ss_pred HHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEEE----eCC------CCCHHHHHHHhcccccCC--CCceEEEEEcc
Confidence 999999999999999999999999999999999998 443 336889999999999988 78999999998
Q ss_pred CcHHHHHHh
Q 043190 1070 PKKSFYKKF 1078 (1492)
Q Consensus 1070 ~~~~~~~~~ 1078 (1492)
.+...+.++
T Consensus 137 ~~~~~~~~~ 145 (165)
T 1fuk_A 137 EDVGAMREL 145 (165)
T ss_dssp TTHHHHHHH
T ss_pred hHHHHHHHH
Confidence 887665554
No 117
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.69 E-value=1.4e-17 Score=207.11 Aligned_cols=190 Identities=21% Similarity=0.241 Sum_probs=112.1
Q ss_pred CCCcccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCC
Q 043190 4 TQRMIRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGH 82 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (1492)
.+++.|+|+||||+++ .++++.++... +..+........+..+.+.+...... ..+...+.. +... ..++
T Consensus 288 ~~~~~~~i~lSAT~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~--~~k~~~l~~-----ll~~-~~~~ 358 (508)
T 3fho_A 288 LPRNTQIVLFSATFSERVEKYAERFAPN-ANEIRLKTEELSVEGIKQLYMDCQSE--EHKYNVLVE-----LYGL-LTIG 358 (508)
T ss_dssp SCTTCEEEEEESCCSTHHHHHHHHHSTT-CEEECCCCCC----CCCCEEEEC--C--HHHHHHHHH-----HHC----CC
T ss_pred CCcCCeEEEEeCCCCHHHHHHHHHhcCC-CeEEEeccccCCcccceEEEEECCch--HHHHHHHHH-----HHHh-cCCC
Confidence 3567899999999998 67777777654 22222222222222333333332221 111111111 1111 2567
Q ss_pred cEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHH
Q 043190 83 QAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTER 162 (1492)
Q Consensus 83 ~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~ 162 (1492)
++||||++++.++.+++.|.+. ..+++.|||+|++.+|..+++
T Consensus 359 ~~LVF~~s~~~a~~l~~~L~~~-------------------------------------~~~v~~~hg~~~~~~R~~il~ 401 (508)
T 3fho_A 359 QSIIFCKKKDTAEEIARRMTAD-------------------------------------GHTVACLTGNLEGAQRDAIMD 401 (508)
T ss_dssp CEEEBCSSTTTTTHHHHHHTTT-------------------------------------TCCCCEEC-----CTTGGGTH
T ss_pred cEEEEECCHHHHHHHHHHHHhC-------------------------------------CCcEEEEeCCCCHHHHHHHHH
Confidence 9999999999999998877531 335899999999999999999
Q ss_pred HHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC---CcccCchhhhhhccCCCCCCccceEEEEeCCcc----
Q 043190 163 LFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG---GWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK---- 235 (1492)
Q Consensus 163 ~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~---~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~---- 235 (1492)
.|++|.++|||||+++++|||+|++++||. |++... ..+..+|+||+|||||.| ..|.+++++...+
T Consensus 402 ~f~~g~~~VLVaT~~l~~GiDip~v~~VI~----~~~p~~~~~~~s~~~~~Qr~GRagR~g--~~g~~i~l~~~~~~~~~ 475 (508)
T 3fho_A 402 SFRVGTSKVLVTTNVIARGIDVSQVNLVVN----YDMPLDQAGRPDPQTYLHRIGRTGRFG--RVGVSINFVHDKKSWEE 475 (508)
T ss_dssp HHHSSSCCCCEECC-----CCCTTCCEEEC--------CC-----CTHHHHHTTSCCC-------CEEEEEECTTTSSSS
T ss_pred HHHCCCCeEEEeCChhhcCCCccCCCEEEE----ECCCCcccCCCCHHHHHHHhhhcCCCC--CCcEEEEEEeChHHHHH
Confidence 999999999999999999999999999996 443211 135567999999999999 6799999987432
Q ss_pred HHHHHHHhcC
Q 043190 236 LAYYLRLLTS 245 (1492)
Q Consensus 236 ~~~~~~~~~~ 245 (1492)
...+.+.++.
T Consensus 476 ~~~i~~~~~~ 485 (508)
T 3fho_A 476 MNAIQEYFQR 485 (508)
T ss_dssp HHHHHHHSCC
T ss_pred HHHHHHHHCC
Confidence 3444444443
No 118
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.69 E-value=4e-17 Score=171.18 Aligned_cols=116 Identities=22% Similarity=0.287 Sum_probs=101.0
Q ss_pred HhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHH
Q 043190 911 ICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDR 990 (1492)
Q Consensus 911 l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R 990 (1492)
+....+++++||||+++..++.++..|.. .+.++..+||+|++.+|
T Consensus 25 ll~~~~~~~~lVF~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~hg~~~~~~r 70 (172)
T 1t5i_A 25 LLDVLEFNQVVIFVKSVQRCIALAQLLVE----------------------------------QNFPAIAIHRGMPQEER 70 (172)
T ss_dssp HHHHSCCSSEEEECSSHHHHHHHHHHHHH----------------------------------TTCCEEEECTTSCHHHH
T ss_pred HHHhCCCCcEEEEECCHHHHHHHHHHHHh----------------------------------cCCCEEEEECCCCHHHH
Confidence 33344678999999999999999987743 25678999999999999
Q ss_pred HHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 991 SLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 991 ~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
..+++.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| ..|.+++++.+.
T Consensus 71 ~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~----~d~------p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~ 138 (172)
T 1t5i_A 71 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----YDM------PEDSDTYLHRVARAGRFG--TKGLAITFVSDE 138 (172)
T ss_dssp HHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE----SSC------CSSHHHHHHHHHHHTGGG--CCCEEEEEECSH
T ss_pred HHHHHHHHCCCCcEEEECCchhcCcchhhCCEEEE----ECC------CCCHHHHHHHhcccccCC--CCcEEEEEEcCh
Confidence 99999999999999999999999999999999998 443 336899999999999988 789999999876
Q ss_pred cH
Q 043190 1071 KK 1072 (1492)
Q Consensus 1071 ~~ 1072 (1492)
+.
T Consensus 139 ~~ 140 (172)
T 1t5i_A 139 ND 140 (172)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 119
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.69 E-value=9.5e-17 Score=192.49 Aligned_cols=175 Identities=23% Similarity=0.380 Sum_probs=127.7
Q ss_pred CCCcccEEEEcccCCCh--HHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHH-hc
Q 043190 4 TQRMIRIVGLSATLPNY--LEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSL-RQ 80 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~--~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 80 (1492)
.+++.|+++||||+++. +.+..+++.. . .+. ...+.++.+.+....... +. ..+.+.+ ..
T Consensus 175 ~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~-~~~-~~~~~~~~~~~~~~~~~~---~~--------~~l~~~l~~~ 237 (367)
T 1hv8_A 175 CNKDKRILLFSATMPREILNLAKKYMGDY----S-FIK-AKINANIEQSYVEVNENE---RF--------EALCRLLKNK 237 (367)
T ss_dssp SCSSCEEEEECSSCCHHHHHHHHHHCCSE----E-EEE-CCSSSSSEEEEEECCGGG---HH--------HHHHHHHCST
T ss_pred CCCCceEEEEeeccCHHHHHHHHHHcCCC----e-EEE-ecCCCCceEEEEEeChHH---HH--------HHHHHHHhcC
Confidence 35678999999999862 3344454422 1 111 122234545544433221 11 1222222 45
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
++++||||+++++++.+++.|.+. ..++..+||++++++|..+
T Consensus 238 ~~~~lvf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~~ 280 (367)
T 1hv8_A 238 EFYGLVFCKTKRDTKELASMLRDI-------------------------------------GFKAGAIHGDLSQSQREKV 280 (367)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECSSSCHHHHHHH
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc-------------------------------------CCCeEEeeCCCCHHHHHHH
Confidence 678999999999999999887642 2358999999999999999
Q ss_pred HHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 161 ERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
++.|++|+.+|||||+++++|+|+|+.++||. |++ +++..+|.||+|||||.| ..|.+++++++.+...+.
T Consensus 281 ~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~---~~s~~~~~Q~~GR~~R~g--~~g~~~~~~~~~~~~~~~ 351 (367)
T 1hv8_A 281 IRLFKQKKIRILIATDVMSRGIDVNDLNCVIN----YHL---PQNPESYMHRIGRTGRAG--KKGKAISIINRREYKKLR 351 (367)
T ss_dssp HHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE----SSC---CSCHHHHHHHSTTTCCSS--SCCEEEEEECTTSHHHHH
T ss_pred HHHHHcCCCeEEEECChhhcCCCcccCCEEEE----ecC---CCCHHHhhhcccccccCC--CccEEEEEEcHHHHHHHH
Confidence 99999999999999999999999999999996 443 235667999999999999 679999999888765544
Q ss_pred H
Q 043190 241 R 241 (1492)
Q Consensus 241 ~ 241 (1492)
.
T Consensus 352 ~ 352 (367)
T 1hv8_A 352 Y 352 (367)
T ss_dssp H
T ss_pred H
Confidence 3
No 120
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.68 E-value=9e-17 Score=202.03 Aligned_cols=184 Identities=19% Similarity=0.242 Sum_probs=130.6
Q ss_pred CcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 6 RMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 6 ~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
+++|++++|||.+..++++.+.+.. + .+....|+.|+... .... ..+. ......+
T Consensus 270 ~~i~il~~SAT~~~i~~l~~~~~~~----~-~v~~~~r~~~l~~~-----~~~l----~~l~-----------~~~~g~i 324 (677)
T 3rc3_A 270 EEVHLCGEPAAIDLVMELMYTTGEE----V-EVRDYKRLTPISVL-----DHAL----ESLD-----------NLRPGDC 324 (677)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHTCC----E-EEEECCCSSCEEEC-----SSCC----CSGG-----------GCCTTEE
T ss_pred cceEEEeccchHHHHHHHHHhcCCc----e-EEEEeeecchHHHH-----HHHH----HHHH-----------hcCCCCE
Confidence 5789999999988888888877543 1 23334566665421 1000 0000 1134458
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|||+|+++++.+++.|.+. ..++++|||+|++++|..+++.|+
T Consensus 325 If~~s~~~ie~la~~L~~~-------------------------------------g~~v~~lHG~L~~~~R~~~~~~F~ 367 (677)
T 3rc3_A 325 IVCFSKNDIYSVSRQIEIR-------------------------------------GLESAVIYGSLPPGTKLAQAKKFN 367 (677)
T ss_dssp EECSSHHHHHHHHHHHHHT-------------------------------------TCCCEEECTTSCHHHHHHHHHHHH
T ss_pred EEEcCHHHHHHHHHHHHhc-------------------------------------CCCeeeeeccCCHHHHHHHHHHHH
Confidence 9999999999999888642 346999999999999999999999
Q ss_pred C--CCccEEEeccccccccCCCcEEEEEecccee--cCCCC----CcccCchhhhhhccCCCCCC-ccceEEEEeCCccH
Q 043190 166 E--GLLKVLVCTATLAWGVNLPAHTVVIKGTQLY--DPKAG----GWRDLGMLDIFGRAGRPQFD-RSGEGIIITSHDKL 236 (1492)
Q Consensus 166 ~--g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~--~~~~~----~~~~~~~~~~~GRAGR~~~d-~~G~~i~~~~~~~~ 236 (1492)
+ |.++|||||+++++|||+|+..||+.|...| |+..+ +++..+|.||+|||||.|.+ ..|.|+.++..+ .
T Consensus 368 ~~~g~~~VLVATdi~e~GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d-~ 446 (677)
T 3rc3_A 368 DPNDPCKILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHED-L 446 (677)
T ss_dssp CTTSSCCEEEECGGGGSSCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH-H
T ss_pred ccCCCeEEEEeCcHHHCCcCcCccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecch-H
Confidence 9 9999999999999999998888888777653 33311 45667799999999999976 358888776554 4
Q ss_pred HHHHHHhcC-CCccccc
Q 043190 237 AYYLRLLTS-QLPIESQ 252 (1492)
Q Consensus 237 ~~~~~~~~~-~~~ies~ 252 (1492)
..+.+++.. ..++++.
T Consensus 447 ~~~~~~~~~~~~~i~~~ 463 (677)
T 3rc3_A 447 SLLKEILKRPVDPIRAA 463 (677)
T ss_dssp HHHHHHHHSCCCCCCCE
T ss_pred HHHHHHHhcCcchhhhc
Confidence 455554444 4466663
No 121
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.68 E-value=9.1e-17 Score=170.42 Aligned_cols=125 Identities=20% Similarity=0.282 Sum_probs=91.3
Q ss_pred HHHHhhcCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCH
Q 043190 908 YAAICTHSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLND 987 (1492)
Q Consensus 908 ~~~l~~~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 987 (1492)
...+....+++++||||++++.++.++..|.. .+..+..+||++++
T Consensus 37 ~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~----------------------------------~g~~~~~lhg~~~~ 82 (185)
T 2jgn_A 37 LDLLNATGKDSLTLVFVETKKGADSLEDFLYH----------------------------------EGYACTSIHGDRSQ 82 (185)
T ss_dssp HHHHHHC-CCSCEEEEESCHHHHHHHHHHHHH----------------------------------TTCCEEEEC-----
T ss_pred HHHHHhcCCCCeEEEEECCHHHHHHHHHHHHH----------------------------------cCCceEEEeCCCCH
Confidence 33444444678999999999999999887733 25689999999999
Q ss_pred HHHHHHHHHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEe
Q 043190 988 KDRSLVEELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILV 1067 (1492)
Q Consensus 988 ~~R~~v~~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~ 1067 (1492)
.+|..+++.|++|+++|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| ..|.|++++
T Consensus 83 ~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~----~d~------p~s~~~~~Qr~GR~~R~g--~~g~~~~~~ 150 (185)
T 2jgn_A 83 RDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN----FDL------PSDIEEYVHRIGRTGRVG--NLGLATSFF 150 (185)
T ss_dssp ---CHHHHHHHHTSSSEEEEEC------CCCSBSEEEE----SSC------CSSHHHHHHHHTTBCCTT--SCEEEEEEE
T ss_pred HHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE----eCC------CCCHHHHHHHccccCCCC--CCcEEEEEE
Confidence 99999999999999999999999999999999999998 443 336899999999999988 789999999
Q ss_pred cCCcHHHHHHh
Q 043190 1068 HEPKKSFYKKF 1078 (1492)
Q Consensus 1068 ~~~~~~~~~~~ 1078 (1492)
.+.+...+.++
T Consensus 151 ~~~~~~~~~~l 161 (185)
T 2jgn_A 151 NERNINITKDL 161 (185)
T ss_dssp CGGGGGGHHHH
T ss_pred chhhHHHHHHH
Confidence 88775544433
No 122
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.68 E-value=1.8e-16 Score=168.69 Aligned_cols=109 Identities=23% Similarity=0.302 Sum_probs=93.6
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++||||++++.++.+++.|... ...+..+||+|++++|..
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------g~~~~~lhg~~~~~~R~~ 95 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLK-------------------------------------GVEAVAIHGGKDQEERTK 95 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHH-------------------------------------TCCEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc-------------------------------------CCcEEEEeCCCCHHHHHH
Confidence 3568999999999999999888653 234889999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
+++.|++|.++|||||+++++|+|+|++++||+ ||+. ++..+|.||+|||||.| ..|.++++++..
T Consensus 96 ~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d~p---~~~~~~~qr~GR~gR~g--~~g~~i~l~~~~ 161 (191)
T 2p6n_A 96 AIEAFREGKKDVLVATDVASKGLDFPAIQHVIN----YDMP---EEIENYVHRIGRTGCSG--NTGIATTFINKA 161 (191)
T ss_dssp HHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE----SSCC---SSHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred HHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE----eCCC---CCHHHHHHHhCccccCC--CCcEEEEEEcCc
Confidence 999999999999999999999999999999996 6643 46667999999999999 679999998865
No 123
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.67 E-value=1.1e-17 Score=202.76 Aligned_cols=115 Identities=23% Similarity=0.363 Sum_probs=0.0
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++||||+++++++.+++.|.+. ..++..+||+|++++|..
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~~~~~~~~r~~ 300 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRND-------------------------------------KFTVSAIYSDLPQQERDT 300 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc-------------------------------------CCeEEEeeCCCCHHHHHH
Confidence 4578999999999999998877543 224888999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+++.|++|..+|||||+++++|+|+|++++||. |++. ++..+|.||+|||||.| ..|.|++++++++...+
T Consensus 301 ~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~----~~~p---~s~~~~~Qr~GR~~R~g--~~g~~~~~~~~~~~~~~ 371 (394)
T 1fuu_A 301 IMKEFRSGSSRILISTDLLARGIDVQQVSLVIN----YDLP---ANKENYIHRIGRGGRFG--RKGVAINFVTNEDVGAM 371 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHCCCCcEEEECChhhcCCCcccCCEEEE----eCCC---CCHHHHHHHcCcccCCC--CCceEEEEEchhHHHHH
Confidence 999999999999999999999999999999996 4432 35567999999999998 67999999988775544
Q ss_pred H
Q 043190 240 L 240 (1492)
Q Consensus 240 ~ 240 (1492)
.
T Consensus 372 ~ 372 (394)
T 1fuu_A 372 R 372 (394)
T ss_dssp -
T ss_pred H
Confidence 4
No 124
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.66 E-value=2.7e-16 Score=178.73 Aligned_cols=118 Identities=20% Similarity=0.345 Sum_probs=98.6
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
..++++||||++++.++.++..|.. .+..+..+||+|++.+|..++
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~----------------------------------~g~~~~~lhg~l~~~~r~~~~ 71 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLR----------------------------------LGHPAQALHGDMSQGERERVM 71 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHT----------------------------------TTCCEEEECSCCCTHHHHHHH
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHh----------------------------------CCCCEEEEeCCCCHHHHHHHH
Confidence 3478999999999999998877732 267899999999999999999
Q ss_pred HHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH
Q 043190 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF 1074 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~ 1074 (1492)
+.|++|+++|||||+++++|+|+|++++||+ |+. +.+..+|+||+|||||.| ..|.|+++++..+...
T Consensus 72 ~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~----~d~------p~s~~~y~Qr~GRagR~g--~~G~~i~l~~~~e~~~ 139 (300)
T 3i32_A 72 GAFRQGEVRVLVATDVAARGLDIPQVDLVVH----YRM------PDRAEAYQHRSGRTGRAG--RGGRVVLLYGPRERRD 139 (300)
T ss_dssp HHHHHTSCCEEEECSTTTCSTTCCCCSEEEE----SSC------CSSTTHHHHHHTCCC-------CEEEEEECSSTHHH
T ss_pred HHhhcCCceEEEEechhhcCccccceeEEEE----cCC------CCCHHHHHHHccCcCcCC--CCceEEEEeChHHHHH
Confidence 9999999999999999999999999999998 442 235889999999999988 7899999999888665
Q ss_pred HHHh
Q 043190 1075 YKKF 1078 (1492)
Q Consensus 1075 ~~~~ 1078 (1492)
+..+
T Consensus 140 ~~~i 143 (300)
T 3i32_A 140 VEAL 143 (300)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 125
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.65 E-value=5e-16 Score=165.33 Aligned_cols=108 Identities=26% Similarity=0.386 Sum_probs=94.4
Q ss_pred CCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHHH
Q 043190 917 TKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEEL 996 (1492)
Q Consensus 917 ~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~ 996 (1492)
++++||||+++..++.++..|.. .+..+..+||++++.+|..+++.
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~----------------------------------~g~~~~~lhg~~~~~~R~~~l~~ 99 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLL----------------------------------KGVEAVAIHGGKDQEERTKAIEA 99 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH----------------------------------HTCCEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHH----------------------------------cCCcEEEEeCCCCHHHHHHHHHH
Confidence 56899999999999999887743 25678999999999999999999
Q ss_pred HhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Q 043190 997 FANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEP 1070 (1492)
Q Consensus 997 f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~ 1070 (1492)
|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| ..|.|++++++.
T Consensus 100 F~~g~~~vLvaT~~~~~Gldi~~v~~VI~----~d~------p~~~~~~~qr~GR~gR~g--~~g~~i~l~~~~ 161 (191)
T 2p6n_A 100 FREGKKDVLVATDVASKGLDFPAIQHVIN----YDM------PEEIENYVHRIGRTGCSG--NTGIATTFINKA 161 (191)
T ss_dssp HHHTSCSEEEECHHHHTTCCCCCCSEEEE----SSC------CSSHHHHHHHHTTSCC-----CCEEEEEECTT
T ss_pred HhcCCCEEEEEcCchhcCCCcccCCEEEE----eCC------CCCHHHHHHHhCccccCC--CCcEEEEEEcCc
Confidence 99999999999999999999999999998 553 336899999999999988 789999999876
No 126
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.64 E-value=4.8e-16 Score=183.88 Aligned_cols=170 Identities=19% Similarity=0.229 Sum_probs=122.0
Q ss_pred CCCcccEEEEcccCCCh--HHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 4 TQRMIRIVGLSATLPNY--LEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 4 ~~~~~riv~lSATl~n~--~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
.+...+++++|||+|+. +.+..|+... . .+.....+.++...+..+..... ... ..+ . -..+
T Consensus 157 ~~~~~~~~~~SAT~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~-~-~~~~ 220 (337)
T 2z0m_A 157 TSNRKITGLFSATIPEEIRKVVKDFITNY--E---EIEACIGLANVEHKFVHVKDDWR-SKV--------QAL-R-ENKD 220 (337)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHSCSC--E---EEECSGGGGGEEEEEEECSSSSH-HHH--------HHH-H-TCCC
T ss_pred CCcccEEEEEeCcCCHHHHHHHHHhcCCc--e---eeecccccCCceEEEEEeChHHH-HHH--------HHH-H-hCCC
Confidence 34577899999999872 3455665432 1 12223333445455544433211 110 111 0 1457
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTE 161 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve 161 (1492)
+++||||+++++++.+++.|. ++..+||+|++.+|..++
T Consensus 221 ~~~lvf~~~~~~~~~l~~~l~-----------------------------------------~~~~~~~~~~~~~r~~~~ 259 (337)
T 2z0m_A 221 KGVIVFVRTRNRVAKLVRLFD-----------------------------------------NAIELRGDLPQSVRNRNI 259 (337)
T ss_dssp SSEEEECSCHHHHHHHHTTCT-----------------------------------------TEEEECTTSCHHHHHHHH
T ss_pred CcEEEEEcCHHHHHHHHHHhh-----------------------------------------hhhhhcCCCCHHHHHHHH
Confidence 889999999999988775442 278899999999999999
Q ss_pred HHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHHH
Q 043190 162 RLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYYL 240 (1492)
Q Consensus 162 ~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~ 240 (1492)
+.|++|+++|||||+++++|+|+|+.++||. |++. ++..+|.||+|||||.| ..|.|++++. .+.....
T Consensus 260 ~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----~~~~---~s~~~~~Q~~GR~gR~g--~~g~~~~~~~-~~~~~~~ 328 (337)
T 2z0m_A 260 DAFREGEYDMLITTDVASRGLDIPLVEKVIN----FDAP---QDLRTYIHRIGRTGRMG--RKGEAITFIL-NEYWLEK 328 (337)
T ss_dssp HHHHTTSCSEEEECHHHHTTCCCCCBSEEEE----SSCC---SSHHHHHHHHTTBCGGG--CCEEEEEEES-SCHHHHH
T ss_pred HHHHcCCCcEEEEcCccccCCCccCCCEEEE----ecCC---CCHHHhhHhcCccccCC--CCceEEEEEe-CcHHHHH
Confidence 9999999999999999999999999999986 5543 35667999999999998 6699999988 5544443
No 127
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.43 E-value=2.2e-17 Score=173.11 Aligned_cols=115 Identities=23% Similarity=0.346 Sum_probs=98.4
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+++++||||++++.++.+++.|.+. ..+++.+||+|++.+|..
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~g~~~~~~r~~ 71 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA-------------------------------------GINNCYLEGEMVQGKRNE 71 (170)
Confidence 4578999999999999999887643 234888999999999999
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHHH
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAYY 239 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~ 239 (1492)
+++.|++|.++|||||+++++|+|+|+.++||. |++ +++..+|+||+|||||.| ..|.++++++..+...+
T Consensus 72 ~~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~----~~~---p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~~ 142 (170)
T 2yjt_D 72 AIKRLTEGRVNVLVATDVAARGIDIPDVSHVFN----FDM---PRSGDTYLHRIGRTARAG--RKGTAISLVEAHDHLLL 142 (170)
Confidence 999999999999999999999999999999997 443 235566999999999998 67999999987765544
Q ss_pred H
Q 043190 240 L 240 (1492)
Q Consensus 240 ~ 240 (1492)
.
T Consensus 143 ~ 143 (170)
T 2yjt_D 143 G 143 (170)
Confidence 3
No 128
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.61 E-value=1.5e-15 Score=168.09 Aligned_cols=139 Identities=23% Similarity=0.250 Sum_probs=105.9
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE-E
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE-M 766 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~-v 766 (1492)
.|+++|.+++..++ .++++++++|||+|||.++..++... +.+++|++|+++|+.|..+++.+ + +.+ +
T Consensus 93 ~l~~~Q~~ai~~~~-~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~-~----~~~~v 161 (237)
T 2fz4_A 93 SLRDYQEKALERWL-VDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGI-F----GEEYV 161 (237)
T ss_dssp CCCHHHHHHHHHHT-TTSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGG-G----CGGGE
T ss_pred CcCHHHHHHHHHHH-hCCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHh-C----CCCeE
Confidence 69999999999988 56789999999999999998887664 67899999999999998777655 3 777 8
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCce
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAV 846 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~ 846 (1492)
..++|+.. ...+|+|+||+.+...... ...++++|||||+|++.+. .+..++.. . ...
T Consensus 162 ~~~~g~~~------~~~~i~v~T~~~l~~~~~~-----~~~~~~llIiDEaH~l~~~---~~~~i~~~-------~-~~~ 219 (237)
T 2fz4_A 162 GEFSGRIK------ELKPLTVSTYDSAYVNAEK-----LGNRFMLLIFDEVHHLPAE---SYVQIAQM-------S-IAP 219 (237)
T ss_dssp EEESSSCB------CCCSEEEEEHHHHHHTHHH-----HTTTCSEEEEECSSCCCTT---THHHHHHT-------C-CCS
T ss_pred EEEeCCCC------CcCCEEEEeHHHHHhhHHH-----hcccCCEEEEECCccCCCh---HHHHHHHh-------c-cCC
Confidence 88888754 2578999999987544432 1246899999999998543 23333221 1 256
Q ss_pred EEEEEcCCCCChH
Q 043190 847 RFIGLSTALANAG 859 (1492)
Q Consensus 847 ~ii~lSATl~~~~ 859 (1492)
++++||||+.+.+
T Consensus 220 ~~l~LSATp~r~D 232 (237)
T 2fz4_A 220 FRLGLTATFERED 232 (237)
T ss_dssp EEEEEEESCC---
T ss_pred EEEEEecCCCCCC
Confidence 7899999997643
No 129
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.39 E-value=6.5e-17 Score=169.54 Aligned_cols=116 Identities=19% Similarity=0.267 Sum_probs=100.1
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
.+++++||||++++.++.++..|.. .+.++..+||++++.+|..++
T Consensus 28 ~~~~~~iVF~~~~~~~~~l~~~L~~----------------------------------~~~~~~~~~g~~~~~~r~~~~ 73 (170)
T 2yjt_D 28 PEATRSIVFVRKRERVHELANWLRE----------------------------------AGINNCYLEGEMVQGKRNEAI 73 (170)
Confidence 4567899999999999998877732 256788999999999999999
Q ss_pred HHHhcCCceEEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcHHH
Q 043190 995 ELFANNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPKKSF 1074 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~~~~ 1074 (1492)
+.|++|+.+|||||+++++|+|+|++++||+ |+. +.+..+|+||+||+||.| ..|.+++++...+...
T Consensus 74 ~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~----~~~------p~~~~~~~qr~GR~~R~g--~~g~~~~~~~~~~~~~ 141 (170)
T 2yjt_D 74 KRLTEGRVNVLVATDVAARGIDIPDVSHVFN----FDM------PRSGDTYLHRIGRTARAG--RKGTAISLVEAHDHLL 141 (170)
Confidence 9999999999999999999999999999997 442 335889999999999987 7899999998776554
Q ss_pred HH
Q 043190 1075 YK 1076 (1492)
Q Consensus 1075 ~~ 1076 (1492)
+.
T Consensus 142 ~~ 143 (170)
T 2yjt_D 142 LG 143 (170)
Confidence 43
No 130
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.59 E-value=5e-15 Score=180.29 Aligned_cols=116 Identities=18% Similarity=0.269 Sum_probs=91.3
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEE-EEcCCCChhhHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVG-VHHAGMLRSDRGL 159 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~-~hhagl~~~~R~~ 159 (1492)
++++||||+|++.|+.+++.|.+. ...++ .+||. +|.
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~h~~----~r~- 289 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRF-------------------------------------KFNVGETWSEF----EKN- 289 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHT-------------------------------------TCCEEESSSCH----HHH-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-------------------------------------CCceehhhcCc----chH-
Confidence 589999999999999999888653 22366 77874 444
Q ss_pred HHHHHhCCCccEEEe----ccccccccCCCc-EEEEEeccceecCCCCCcccCchhhhhhccCCCCCC--ccceEEEEeC
Q 043190 160 TERLFSEGLLKVLVC----TATLAWGVNLPA-HTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD--RSGEGIIITS 232 (1492)
Q Consensus 160 ve~~f~~g~i~vlva----T~tla~Gvnlp~-~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d--~~G~~i~~~~ 232 (1492)
++.|++|.++|||| |+++++|||+|+ +++||+ |+++.+ .+..+|+||+|||||.|.+ +.|.++++++
T Consensus 290 -~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~----~~~p~~-~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 290 -FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF----WGTPSG-PDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp -HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE----ESCCTT-TCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred -HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE----ECCCCC-CCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 99999999999999 999999999999 888885 665411 3667799999999999976 5899999994
Q ss_pred Ccc-HHHHHHHhc
Q 043190 233 HDK-LAYYLRLLT 244 (1492)
Q Consensus 233 ~~~-~~~~~~~~~ 244 (1492)
+.. ...+.+.++
T Consensus 364 ~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 364 DEEIFESLKTRLL 376 (414)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhc
Confidence 433 234444444
No 131
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.58 E-value=1.6e-14 Score=183.51 Aligned_cols=123 Identities=20% Similarity=0.230 Sum_probs=101.3
Q ss_pred HHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 72 KKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 72 ~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
..+......+.++||||+|++.++.+++.|.+. +..+.++||+
T Consensus 430 ~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-------------------------------------gi~~~~lh~~ 472 (664)
T 1c4o_A 430 EGIRERAARGERTLVTVLTVRMAEELTSFLVEH-------------------------------------GIRARYLHHE 472 (664)
T ss_dssp HHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTT
T ss_pred HHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc-------------------------------------CCCceeecCC
Confidence 344455567889999999999999999888653 1237889999
Q ss_pred CChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC--CcccCchhhhhhccCCCCCCccceEEE
Q 043190 152 MLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG--GWRDLGMLDIFGRAGRPQFDRSGEGII 229 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~--~~~~~~~~~~~GRAGR~~~d~~G~~i~ 229 (1492)
|++.+|..+++.|++|.++|||||+++++|+|+|.+++||. |+.+.. +.+..+|+||+|||||.+ .|.+++
T Consensus 473 ~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lVI~----~d~d~~G~p~s~~~~iQr~GRagR~~---~G~~i~ 545 (664)
T 1c4o_A 473 LDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARNA---RGEVWL 545 (664)
T ss_dssp CCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEEEE----TTTTSCSGGGSHHHHHHHHGGGTTST---TCEEEE
T ss_pred CCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEEEE----eCCcccCCCCCHHHHHHHHCccCcCC---CCEEEE
Confidence 99999999999999999999999999999999999888775 554332 235567999999999985 699999
Q ss_pred EeCCccHHH
Q 043190 230 ITSHDKLAY 238 (1492)
Q Consensus 230 ~~~~~~~~~ 238 (1492)
+++..+...
T Consensus 546 ~~~~~~~~~ 554 (664)
T 1c4o_A 546 YADRVSEAM 554 (664)
T ss_dssp ECSSCCHHH
T ss_pred EEcCCCHHH
Confidence 998765443
No 132
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.56 E-value=5.1e-14 Score=177.23 Aligned_cols=82 Identities=26% Similarity=0.382 Sum_probs=64.5
Q ss_pred CCCHHHHHHHHhh---hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 688 HFNPIQTQIFHIL---YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~---~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
.|+|.|.+.+..+ +.+++++++.||||+|||++|++|++..+.. .+.+++|++||++|+.|+.+++.. +....++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-~~~kvli~t~T~~l~~Qi~~el~~-l~~~~~~ 80 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-RKLKVLYLVRTNSQEEQVIKELRS-LSSTMKI 80 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHHHH-HHHHSCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHHH-HhhccCe
Confidence 4899999987654 3478999999999999999999999987754 368999999999999999998876 3333255
Q ss_pred EEEEEcC
Q 043190 765 EMVEMTG 771 (1492)
Q Consensus 765 ~v~~~~g 771 (1492)
++..+.|
T Consensus 81 ~~~~l~g 87 (620)
T 4a15_A 81 RAIPMQG 87 (620)
T ss_dssp CEEECCC
T ss_pred EEEEEEC
Confidence 5555444
No 133
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.56 E-value=1.4e-15 Score=184.79 Aligned_cols=106 Identities=18% Similarity=0.129 Sum_probs=77.9
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
+.++++||||+|+++++.+++.|.+. ...++.+|| ++|.
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~-------------------------------------~~~v~~lhg----~~R~ 213 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKA-------------------------------------GKSVVVLNR----KTFE 213 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHT-------------------------------------TCCEEECCS----SSCC
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHc-------------------------------------CCCEEEecc----hhHH
Confidence 35789999999999999999888653 223889998 5799
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEe-ccce--------------ecCCCCCcccCchhhhhhccCCC-CCC
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIK-GTQL--------------YDPKAGGWRDLGMLDIFGRAGRP-QFD 222 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~-~~~~--------------~~~~~~~~~~~~~~~~~GRAGR~-~~d 222 (1492)
.+++.|++|+++|||||+++++|||+| +++||+ |+.. |+. +.+..+|.||+|||||. |
T Consensus 214 ~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~---p~~~~~~~Qr~GR~GR~g~-- 287 (440)
T 1yks_A 214 REYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPL---RISASSAAQRRGRIGRNPN-- 287 (440)
T ss_dssp --------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEE---ECCHHHHHHHHTTSSCCTT--
T ss_pred HHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeecccc---ccCHHHHHHhccccCCCCC--
Confidence 999999999999999999999999999 666664 2221 332 23556799999999997 5
Q ss_pred ccceEEEEe
Q 043190 223 RSGEGIIIT 231 (1492)
Q Consensus 223 ~~G~~i~~~ 231 (1492)
..|.|++++
T Consensus 288 ~~g~~~~l~ 296 (440)
T 1yks_A 288 RDGDSYYYS 296 (440)
T ss_dssp CCCEEEEEC
T ss_pred CCceEEEEe
Confidence 579999996
No 134
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.55 E-value=2.4e-14 Score=192.26 Aligned_cols=174 Identities=17% Similarity=0.251 Sum_probs=121.5
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeec-CCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCc
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFD-SSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQ 83 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1492)
..++++++||||.+ +..+...+... .+...+. ......++...+.... . ......+...+..+++
T Consensus 749 ~~~~~vl~lSATp~-p~~l~~~~~~~--~~~~~i~~~~~~r~~i~~~~~~~~---~--------~~i~~~il~~l~~g~q 814 (1151)
T 2eyq_A 749 RANVDILTLTATPI-PRTLNMAMSGM--RDLSIIATPPARRLAVKTFVREYD---S--------MVVREAILREILRGGQ 814 (1151)
T ss_dssp HTTSEEEEEESSCC-CHHHHHHHTTT--SEEEECCCCCCBCBCEEEEEEECC---H--------HHHHHHHHHHHTTTCE
T ss_pred cCCCCEEEEcCCCC-hhhHHHHHhcC--CCceEEecCCCCccccEEEEecCC---H--------HHHHHHHHHHHhcCCe
Confidence 35689999999963 33343333322 1122221 1122234433332211 1 1122344455577899
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
++|||+++++++.+++.|.+..+ ..+++++||+|++.+|..+++.
T Consensus 815 vlvf~~~v~~~~~l~~~L~~~~p-----------------------------------~~~v~~lhg~~~~~eR~~il~~ 859 (1151)
T 2eyq_A 815 VYYLYNDVENIQKAAERLAELVP-----------------------------------EARIAIGHGQMRERELERVMND 859 (1151)
T ss_dssp EEEECCCSSCHHHHHHHHHHHCT-----------------------------------TSCEEECCSSCCHHHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHHHhCC-----------------------------------CCeEEEEeCCCCHHHHHHHHHH
Confidence 99999999999999988876421 2359999999999999999999
Q ss_pred HhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 164 FSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 164 f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
|++|+++|||||+++++|||+|..++||. +++.. +....+.||+||+||.| ..|.|++++++++
T Consensus 860 F~~g~~~VLVaT~v~e~GiDip~v~~VIi----~~~~~--~~l~~l~Qr~GRvgR~g--~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 860 FHHQRFNVLVCTTIIETGIDIPTANTIII----ERADH--FGLAQLHQLRGRVGRSH--HQAYAWLLTPHPK 923 (1151)
T ss_dssp HHTTSCCEEEESSTTGGGSCCTTEEEEEE----TTTTS--SCHHHHHHHHTTCCBTT--BCEEEEEEECCGG
T ss_pred HHcCCCcEEEECCcceeeecccCCcEEEE----eCCCC--CCHHHHHHHHhccCcCC--CceEEEEEECCcc
Confidence 99999999999999999999998887773 33321 23345899999999998 6799999987653
No 135
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.55 E-value=3.2e-14 Score=180.70 Aligned_cols=122 Identities=19% Similarity=0.261 Sum_probs=100.8
Q ss_pred HHHHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 72 KKVVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 72 ~~~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
..+......+.++||||+|++.++.+++.|.+. +..+.++||+
T Consensus 436 ~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~-------------------------------------gi~~~~lh~~ 478 (661)
T 2d7d_A 436 GEIQARIERNERVLVTTLTKKMSEDLTDYLKEI-------------------------------------GIKVNYLHSE 478 (661)
T ss_dssp HHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECTT
T ss_pred HHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhc-------------------------------------CCCeEEEeCC
Confidence 344455567889999999999999999888653 1237889999
Q ss_pred CChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCC--CcccCchhhhhhccCCCCCCccceEEE
Q 043190 152 MLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAG--GWRDLGMLDIFGRAGRPQFDRSGEGII 229 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~--~~~~~~~~~~~GRAGR~~~d~~G~~i~ 229 (1492)
+++.+|..+++.|++|.++|||||+++++|+|+|.+++||. |+.+.. +.+..+|+||+|||||. ..|.|++
T Consensus 479 ~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~lVi~----~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~ 551 (661)
T 2d7d_A 479 IKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAI----LDADKEGFLRSERSLIQTIGRAARN---AEGRVIM 551 (661)
T ss_dssp CCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEEEEE----TTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEE
T ss_pred CCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCEEEE----eCcccccCCCCHHHHHHHhCcccCC---CCCEEEE
Confidence 99999999999999999999999999999999999988875 554332 23556799999999997 4699999
Q ss_pred EeCCccHH
Q 043190 230 ITSHDKLA 237 (1492)
Q Consensus 230 ~~~~~~~~ 237 (1492)
+++..+..
T Consensus 552 ~~~~~~~~ 559 (661)
T 2d7d_A 552 YADKITKS 559 (661)
T ss_dssp ECSSCCHH
T ss_pred EEeCCCHH
Confidence 99876543
No 136
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.54 E-value=2.8e-15 Score=191.46 Aligned_cols=177 Identities=18% Similarity=0.263 Sum_probs=111.9
Q ss_pred CCcccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcE
Q 043190 5 QRMIRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQA 84 (1492)
Q Consensus 5 ~~~~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (1492)
....++++||||. .++.++..+....+..+....+..| .|+...+. .... ...++..+.+.+..++++
T Consensus 514 ~~~~~vL~mSATp-~p~tl~~~~~g~~~~s~i~~~p~~r-~~i~~~~~--~~~~--------~~~l~~~i~~~l~~g~qv 581 (780)
T 1gm5_A 514 GKMVDTLVMSATP-IPRSMALAFYGDLDVTVIDEMPPGR-KEVQTMLV--PMDR--------VNEVYEFVRQEVMRGGQA 581 (780)
T ss_dssp SSCCCEEEEESSC-CCHHHHHHHTCCSSCEEECCCCSSC-CCCEECCC--CSST--------HHHHHHHHHHHTTTSCCB
T ss_pred CCCCCEEEEeCCC-CHHHHHHHHhCCcceeeeeccCCCC-cceEEEEe--ccch--------HHHHHHHHHHHHhcCCcE
Confidence 3568999999995 4455554443321211111111112 23322211 1111 112234555566788999
Q ss_pred EEEEechHHHHHH----HHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHH-Hh-cccEEEEcCCCChhhHH
Q 043190 85 MVFVHSRKDTVKT----AQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIE-LF-GLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 85 lVF~~sr~~~~~~----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~gv~~hhagl~~~~R~ 158 (1492)
+|||++..+.+.+ +..+.+. |.+ .+ ..+++.+||+|++++|.
T Consensus 582 lVf~~~ie~se~l~~~~a~~l~~~--------------------------------L~~~~~~~~~v~~lHG~m~~~eR~ 629 (780)
T 1gm5_A 582 FIVYPLIEESDKLNVKSAVEMYEY--------------------------------LSKEVFPEFKLGLMHGRLSQEEKD 629 (780)
T ss_dssp CCBCCCC--------CHHHHHHHS--------------------------------GGGSCC---CBCCCCSSSCCSCSH
T ss_pred EEEecchhhhhhhhHHHHHHHHHH--------------------------------HHhhhcCCCcEEEEeCCCCHHHHH
Confidence 9999987665422 1111111 001 01 24689999999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCC
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSH 233 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~ 233 (1492)
.+++.|++|+++|||||+++++|||+|++++||. |+++. +....+.||+|||||.| ..|.|++++++
T Consensus 630 ~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi----~d~~r--~~l~~l~Qr~GRaGR~g--~~g~~ill~~~ 696 (780)
T 1gm5_A 630 RVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI----ENPER--FGLAQLHQLRGRVGRGG--QEAYCFLVVGD 696 (780)
T ss_dssp HHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB----CSCSS--SCTTHHHHHHHTSCCSS--TTCEEECCCCS
T ss_pred HHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE----eCCCC--CCHHHHHHHhcccCcCC--CCCEEEEEECC
Confidence 9999999999999999999999999999998885 66542 23445778999999998 67999999874
No 137
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.51 E-value=8.3e-14 Score=168.57 Aligned_cols=193 Identities=17% Similarity=0.223 Sum_probs=128.5
Q ss_pred ccEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEE-EEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 8 IRIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQ-YIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 8 ~riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
-++.|||+|+.. .+++.+..+.. ++.+ +..+|..-... ...+. . ...+... +...+.+....+.|+|
T Consensus 410 ~kL~GMTGTa~te~~Ef~~iY~l~----vv~I-Ptnkp~~R~d~~d~vy~-t-~~eK~~a----l~~~I~~~~~~gqpVL 478 (822)
T 3jux_A 410 EKLAGMTGTAKTEESEFVQVYGME----VVVI-PTHKPMIRKDHDDLVFR-T-QKEKYEK----IVEEIEKRYKKGQPVL 478 (822)
T ss_dssp SEEEEEESSCGGGHHHHHHHSCCC----EEEC-CCSSCCCCEECCCEEES-S-HHHHHHH----HHHHHHHHHHHTCCEE
T ss_pred hHHeEECCCCchHHHHHHHHhCCe----EEEE-CCCCCcceeecCcEEEe-c-HHHHHHH----HHHHHHHHhhCCCCEE
Confidence 368999999986 56677766543 4433 44555433222 11111 1 1222222 1223333335688999
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|||+|++.++.+++.|.+. +....++||+....+|..+.++|+
T Consensus 479 VFt~S~e~sE~Ls~~L~~~-------------------------------------Gi~~~vLhgkq~~rE~~ii~~ag~ 521 (822)
T 3jux_A 479 VGTTSIEKSELLSSMLKKK-------------------------------------GIPHQVLNAKYHEKEAEIVAKAGQ 521 (822)
T ss_dssp EEESSHHHHHHHHHHHHTT-------------------------------------TCCCEEECSCHHHHHHHHHHHHHS
T ss_pred EEECCHHHHHHHHHHHHHC-------------------------------------CCCEEEeeCCchHHHHHHHHhCCC
Confidence 9999999999999888643 112678899988888888888888
Q ss_pred CCCccEEEeccccccccCCC--------cEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccH-
Q 043190 166 EGLLKVLVCTATLAWGVNLP--------AHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL- 236 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp--------~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~- 236 (1492)
.| .|+|||+.++||+|++ ....||+ |+... +...|.||+|||||.| ..|.++.+++.++.
T Consensus 522 ~g--~VtVATdmAgRGtDI~lg~~V~~~GglhVIn----te~Pe---s~r~y~qriGRTGRqG--~~G~a~~fvsleD~l 590 (822)
T 3jux_A 522 KG--MVTIATNMAGRGTDIKLGPGVAELGGLCIIG----TERHE---SRRIDNQLRGRAGRQG--DPGESIFFLSLEDDL 590 (822)
T ss_dssp TT--CEEEEETTTTTTCCCCCCTTTTTTTSCEEEE----SSCCS---SHHHHHHHHTTSSCSS--CCCEEEEEEETTSHH
T ss_pred CC--eEEEEcchhhCCcCccCCcchhhcCCCEEEe----cCCCC---CHHHHHHhhCccccCC--CCeeEEEEechhHHH
Confidence 77 5999999999999997 5567886 43221 3445899999999999 78999999877651
Q ss_pred ------HHHHH---Hh--cCCCccccchhHhHHH
Q 043190 237 ------AYYLR---LL--TSQLPIESQFISSLKD 259 (1492)
Q Consensus 237 ------~~~~~---~~--~~~~~ies~l~~~l~~ 259 (1492)
+...+ .+ ....||++.......+
T Consensus 591 ~r~fg~~~~~~~m~~~~~~~~~~i~~~~v~~~ie 624 (822)
T 3jux_A 591 LRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIE 624 (822)
T ss_dssp HHHTTHHHHHHHHHHSSCCSSSCBCCHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHcCCCCCceeccHHHHHHHH
Confidence 22222 22 2345888877665443
No 138
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.51 E-value=8.1e-15 Score=184.17 Aligned_cols=111 Identities=17% Similarity=0.053 Sum_probs=85.6
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
+.++++||||+|+++|+.+++.|.+. ...++.+|| ++|.
T Consensus 353 ~~~~~~LVF~~s~~~a~~l~~~L~~~-------------------------------------g~~v~~lhg----~~R~ 391 (618)
T 2whx_A 353 DYQGKTVWFVPSIKAGNDIANCLRKS-------------------------------------GKRVIQLSR----KTFD 391 (618)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEECT----TTHH
T ss_pred hCCCCEEEEECChhHHHHHHHHHHHc-------------------------------------CCcEEEECh----HHHH
Confidence 35779999999999999999988653 123778887 4899
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecC-----CC--------CCcccCchhhhhhccCCCCCCccc
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDP-----KA--------GGWRDLGMLDIFGRAGRPQFDRSG 225 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~-----~~--------~~~~~~~~~~~~GRAGR~~~d~~G 225 (1492)
.+++.|++|+++|||||+++++|||+|...||..|. .++| .. .+.+..+|+||+|||||.|. ..|
T Consensus 392 ~~l~~F~~g~~~VLVaTdv~~rGiDi~v~~VId~g~-~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~-~~G 469 (618)
T 2whx_A 392 TEYPKTKLTDWDFVVTTDISEMGANFRAGRVIDPRR-CLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA-QED 469 (618)
T ss_dssp HHTTHHHHSCCSEEEECGGGGTTCCCCCSEEEECCE-EEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT-CCC
T ss_pred HHHHhhcCCCcEEEEECcHHHcCcccCceEEEECcc-eecceecccCCCceEEcccccCCHHHHHHhccccCCCCC-CCC
Confidence 999999999999999999999999999544444333 1221 00 02345579999999999973 369
Q ss_pred eEEEEeC
Q 043190 226 EGIIITS 232 (1492)
Q Consensus 226 ~~i~~~~ 232 (1492)
.|++++.
T Consensus 470 ~ai~l~~ 476 (618)
T 2whx_A 470 DQYVFSG 476 (618)
T ss_dssp EEEEECS
T ss_pred eEEEEcc
Confidence 9999986
No 139
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.50 E-value=7.9e-15 Score=179.15 Aligned_cols=111 Identities=17% Similarity=0.033 Sum_probs=84.0
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++||||+|+++|+.+++.|.+. ...++..|+. +|..
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~-------------------------------------g~~~~~lh~~----~~~~ 225 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKS-------------------------------------GKRVIQLSRK----TFDT 225 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT-------------------------------------TCCEEEECTT----THHH
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHc-------------------------------------CCeEEECCHH----HHHH
Confidence 4679999999999999999887542 1236677775 4568
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccc----eec--CCC-------CCcccCchhhhhhccCCCCCCccce
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQ----LYD--PKA-------GGWRDLGMLDIFGRAGRPQFDRSGE 226 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~----~~~--~~~-------~~~~~~~~~~~~GRAGR~~~d~~G~ 226 (1492)
+++.|++|+++|||||+++++|||+|+ ++||+... .|| ... .+.+..+|.||+|||||.|.+ .|.
T Consensus 226 ~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~-~g~ 303 (451)
T 2jlq_A 226 EYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ-EDD 303 (451)
T ss_dssp HGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTC-CCE
T ss_pred HHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCC-Ccc
Confidence 999999999999999999999999999 88876321 111 100 112445799999999999942 688
Q ss_pred EEEEeCC
Q 043190 227 GIIITSH 233 (1492)
Q Consensus 227 ~i~~~~~ 233 (1492)
+++++..
T Consensus 304 ~~~~~~~ 310 (451)
T 2jlq_A 304 QYVFSGD 310 (451)
T ss_dssp EEEECSC
T ss_pred EEEEeCC
Confidence 8888754
No 140
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.50 E-value=5.5e-15 Score=180.77 Aligned_cols=112 Identities=18% Similarity=0.113 Sum_probs=83.5
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++||||+|+++|+.+++.|.+. ...++..|+ ++|..
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~-------------------------------------g~~v~~lh~----~~R~~ 227 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRA-------------------------------------GKKVIQLNR----KSYDT 227 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT-------------------------------------TCCEEEEST----TCCCC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhc-------------------------------------CCcEEecCH----HHHHH
Confidence 4789999999999999999888653 223677787 48889
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEe-ccce-----ecCCC-------CCcccCchhhhhhccCCCCCCccce
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIK-GTQL-----YDPKA-------GGWRDLGMLDIFGRAGRPQFDRSGE 226 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~-~~~~-----~~~~~-------~~~~~~~~~~~~GRAGR~~~d~~G~ 226 (1492)
+++.|++|.++|||||+++++|||+|+ ++||+ |+.+ |++.. .+.+..+|+||+|||||.|. ..|.
T Consensus 228 ~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~-~~G~ 305 (459)
T 2z83_A 228 EYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPN-QVGD 305 (459)
T ss_dssp CGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTT-CCCE
T ss_pred HHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCC-CCCe
Confidence 999999999999999999999999999 66665 2111 11100 12345679999999999983 2699
Q ss_pred EEEEeCCc
Q 043190 227 GIIITSHD 234 (1492)
Q Consensus 227 ~i~~~~~~ 234 (1492)
+++++...
T Consensus 306 ~~~~~~~~ 313 (459)
T 2z83_A 306 EYHYGGAT 313 (459)
T ss_dssp EEEECSCC
T ss_pred EEEEEccc
Confidence 99998764
No 141
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.48 E-value=2e-14 Score=181.66 Aligned_cols=109 Identities=19% Similarity=0.140 Sum_probs=86.0
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
+.++++||||+|+++++.+++.|.+. ...++.+|| ++|.
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~-------------------------------------g~~v~~lHg----~eR~ 446 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRA-------------------------------------GKRVIQLNR----KSYD 446 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTT-------------------------------------TCCEEEECS----SSHH
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhC-------------------------------------CCeEEEeCh----HHHH
Confidence 45789999999999999999887642 223888998 4899
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEe-cc-----ceecCCC-------CCcccCchhhhhhccCCC-CCCcc
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIK-GT-----QLYDPKA-------GGWRDLGMLDIFGRAGRP-QFDRS 224 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~-~~-----~~~~~~~-------~~~~~~~~~~~~GRAGR~-~~d~~ 224 (1492)
.+++.|++|+++|||||+++++|||+| ++.||+ |+ ..||++. .+.+..+|.||+|||||. | ..
T Consensus 447 ~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g--~~ 523 (673)
T 2wv9_A 447 TEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPS--QI 523 (673)
T ss_dssp HHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSS--CC
T ss_pred HHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCC--CC
Confidence 999999999999999999999999999 666664 21 1133221 123446799999999998 5 67
Q ss_pred ceEEEEe
Q 043190 225 GEGIIIT 231 (1492)
Q Consensus 225 G~~i~~~ 231 (1492)
|.|++++
T Consensus 524 G~ai~l~ 530 (673)
T 2wv9_A 524 GDEYHYG 530 (673)
T ss_dssp CEEEEEC
T ss_pred CEEEEEE
Confidence 9999995
No 142
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.47 E-value=6.3e-14 Score=169.90 Aligned_cols=107 Identities=17% Similarity=0.079 Sum_probs=82.4
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++++||||+++++++.+++.|.+. ...++.+||+ +|..
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~v~~lhg~----~r~~ 208 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKA-------------------------------------GKKVLYLNRK----TFES 208 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHT-------------------------------------TCCEEEESTT----THHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHc-------------------------------------CCeEEEeCCc----cHHH
Confidence 4679999999999999999888643 2238999987 6889
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEeccce------------ecCCCCCcccCchhhhhhccCCCCCCccceE
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQL------------YDPKAGGWRDLGMLDIFGRAGRPQFDRSGEG 227 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~------------~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~ 227 (1492)
+++.|++|+++|||||+++++|||+|...||..|+.. |+. +.+..+|.||+|||||.|.. .|.+
T Consensus 209 ~~~~f~~g~~~vLVaT~v~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~~---p~~~~~~~Qr~GR~GR~g~~-~~~~ 284 (431)
T 2v6i_A 209 EYPKCKSEKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPI---AITPASAAQRRGRIGRNPEK-LGDI 284 (431)
T ss_dssp HTTHHHHSCCSEEEECGGGGTSCCCCCSEEEECCEEEEEEEETTEEEEEEEE---ECCHHHHHHHHTTSSCCTTC-CCCE
T ss_pred HHHhhcCCCCeEEEECchHHcCcccCCcEEEecCccccceecccceeecccc---cCCHHHHHHhhhccCCCCCC-CCeE
Confidence 9999999999999999999999999966664332221 221 12455799999999998842 4555
Q ss_pred EEEe
Q 043190 228 IIIT 231 (1492)
Q Consensus 228 i~~~ 231 (1492)
+++.
T Consensus 285 ~~~~ 288 (431)
T 2v6i_A 285 YAYS 288 (431)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 6655
No 143
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=180.50 Aligned_cols=112 Identities=17% Similarity=0.332 Sum_probs=86.1
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC--------C
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG--------M 152 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag--------l 152 (1492)
++++||||++++.++.+++.|.+. . .+.. .+..+.++||+ |
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~----~---~l~~------------------------~g~~~~~lhg~~~~~~~~~~ 448 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITEN----E---KFAE------------------------VGVKAHHLIGAGHSSEFKPM 448 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSS----C---SCC-----------------------------CEECCCSCCCTTCCCC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhC----c---cccc------------------------cCcceEEEECCCCccCCCCC
Confidence 789999999999999999888642 0 0000 02237788998 9
Q ss_pred ChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeC
Q 043190 153 LRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITS 232 (1492)
Q Consensus 153 ~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~ 232 (1492)
++.+|..+++.|++|.++|||||+++++|||+|++++||+ ||+. ++..+|.||+|||||.| +.+++++.
T Consensus 449 ~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~----~d~p---~s~~~~~Qr~GRArr~g----~~~~l~~~ 517 (699)
T 4gl2_A 449 TQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIR----YGLV---TNEIAMVQARGRARADE----STYVLVAH 517 (699)
T ss_dssp CHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEE----ESCC---CCHHHHHHHHTTSCSSS----CEEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEE----eCCC---CCHHHHHHHcCCCCCCC----ceEEEEEe
Confidence 9999999999999999999999999999999999999996 7753 46778999999998865 55555554
Q ss_pred Cc
Q 043190 233 HD 234 (1492)
Q Consensus 233 ~~ 234 (1492)
.+
T Consensus 518 ~~ 519 (699)
T 4gl2_A 518 SG 519 (699)
T ss_dssp SS
T ss_pred CC
Confidence 33
No 144
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.45 E-value=1.6e-13 Score=171.34 Aligned_cols=112 Identities=25% Similarity=0.375 Sum_probs=93.1
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcC--------C
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHA--------G 151 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hha--------g 151 (1492)
.++++||||++++.++.+++.|.+. ...+..+|| +
T Consensus 360 ~~~k~lVF~~~~~~~~~l~~~L~~~-------------------------------------~~~~~~~~g~~~~~~~~~ 402 (494)
T 1wp9_A 360 QNSKIIVFTNYRETAKKIVNELVKD-------------------------------------GIKAKRFVGQASKENDRG 402 (494)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHT-------------------------------------TCCEEEECCSSCC-----
T ss_pred CCCeEEEEEccHHHHHHHHHHHHHc-------------------------------------CCCcEEEecccccccccc
Confidence 5789999999999999998888653 223777888 9
Q ss_pred CChhhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEe
Q 043190 152 MLRSDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
|++++|..+++.|++|.++|||||+++++|+|+|+.++||. ||+ +|+...+.||+|||||.| . |.+++++
T Consensus 403 ~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~----~d~---~~~~~~~~Qr~GR~~R~g--~-g~~~~l~ 472 (494)
T 1wp9_A 403 LSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF----YEP---VPSAIRSIQRRGRTGRHM--P-GRVIILM 472 (494)
T ss_dssp --CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEE----SSC---CHHHHHHHHHHTTSCSCC--C-SEEEEEE
T ss_pred CCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCCEEEE----eCC---CCCHHHHHHHHhhccCCC--C-ceEEEEE
Confidence 99999999999999999999999999999999999999985 553 246667999999999998 4 9999998
Q ss_pred CCccHHH
Q 043190 232 SHDKLAY 238 (1492)
Q Consensus 232 ~~~~~~~ 238 (1492)
.....+.
T Consensus 473 ~~~t~ee 479 (494)
T 1wp9_A 473 AKGTRDE 479 (494)
T ss_dssp ETTSHHH
T ss_pred ecCCHHH
Confidence 8776543
No 145
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.44 E-value=2.3e-13 Score=172.98 Aligned_cols=123 Identities=19% Similarity=0.199 Sum_probs=74.9
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+++++||||++++.++.++..|.+.......... .+.+.+...+||+|++++|..
T Consensus 388 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~-------------------------~~~g~~~~~~~~~~~~~~R~~ 442 (555)
T 3tbk_A 388 PETKTILFVKTRALVDALKKWIEENPALSFLKPG-------------------------ILTGRGRTNRATGMTLPAQKC 442 (555)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEE-------------------------ECCC-----------------
T ss_pred CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeee-------------------------EEEecCCcccccccCHHHHHH
Confidence 3589999999999999999988754211000000 011345677899999999999
Q ss_pred HHHHHhC-CCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 160 TERLFSE-GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 160 ve~~f~~-g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
+++.|++ |.++|||||+++++|||+|++++||+ ||+ +++...|.||+|| ||. ..|.+++++++.+...
T Consensus 443 ~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~----~d~---p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~~ 511 (555)
T 3tbk_A 443 VLEAFRASGDNNILIATSVADEGIDIAECNLVIL----YEY---VGNVIKMIQTRGR-GRA---RDSKCFLLTSSADVIE 511 (555)
T ss_dssp ---------CCSEEEECCCTTCCEETTSCSEEEE----ESC---CSSCCCEECSSCC-CTT---TSCEEEEEESCHHHHH
T ss_pred HHHHHhcCCCeeEEEEcchhhcCCccccCCEEEE----eCC---CCCHHHHHHhcCc-CcC---CCceEEEEEcCCCHHH
Confidence 9999999 99999999999999999999999997 664 3466779999999 887 5699999998776543
No 146
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.43 E-value=9.6e-14 Score=176.41 Aligned_cols=124 Identities=17% Similarity=0.227 Sum_probs=55.6
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||++++.++.+++.|.+... ...+. ...+.+.+...+||||++++|.
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~----~~~~~---------------------~~~~~g~~~~~~~~~~~~~~R~ 442 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPI----LNYIK---------------------PGVLMGRGRRDQTTGMTLPSQK 442 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSG----GGSCC---------------------EEC-------------------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCC----cceee---------------------eeEEEccCCcccccccCHHHHH
Confidence 4568999999999999999888754210 00000 0001244567789999999999
Q ss_pred HHHHHHhC-CCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 159 LTERLFSE-GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 159 ~ve~~f~~-g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
.+++.|++ |.++|||||+++++|||+|++++||+ ||+ +++...|.||+|| ||. ..|.++++++..+.+
T Consensus 443 ~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~----~d~---p~s~~~~~Qr~GR-gR~---~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 443 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY---SGNVTKMIQVRGR-GRA---AGSKCILVTSKTEVV 511 (556)
T ss_dssp -----------CCEEEEEC-----------CEEEE----ETC---CSCHHHHHHC------------CCEEEEESCHHHH
T ss_pred HHHHHhcccCceEEEEEcCchhcCCCchhCCEEEE----eCC---CCCHHHHHHhcCC-CCC---CCceEEEEEeCcchH
Confidence 99999999 99999999999999999999999996 775 3577789999999 997 469999999877654
Q ss_pred H
Q 043190 238 Y 238 (1492)
Q Consensus 238 ~ 238 (1492)
.
T Consensus 512 ~ 512 (556)
T 4a2p_A 512 E 512 (556)
T ss_dssp H
T ss_pred H
Confidence 3
No 147
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.42 E-value=7.7e-13 Score=164.86 Aligned_cols=167 Identities=15% Similarity=0.189 Sum_probs=116.8
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEE--EEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQ--YIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
++.|||+|... .+++.+..+.. ++.+ +..+|+.-..+ ++.. . ...+...+ ...+.+....+.|+|
T Consensus 369 kl~GmTGTa~te~~e~~~iY~l~----vv~I-Ptn~p~~r~d~~d~v~~--~-~~~K~~al----~~~i~~~~~~~~pvL 436 (844)
T 1tf5_A 369 KLAGMTGTAKTEEEEFRNIYNMQ----VVTI-PTNRPVVRDDRPDLIYR--T-MEGKFKAV----AEDVAQRYMTGQPVL 436 (844)
T ss_dssp EEEEEESCCGGGHHHHHHHHCCC----EEEC-CCSSCCCCEECCCEEES--S-HHHHHHHH----HHHHHHHHHHTCCEE
T ss_pred hhccCCcccchhHHHHHHHhCCc----eEEe-cCCCCcccccCCcEEEe--C-HHHHHHHH----HHHHHHHHhcCCcEE
Confidence 57899999975 56676666543 3333 44555532211 1111 1 12222221 222222234678999
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|||+|++.++.++..|.+. +......||++.+.+|..+.++|+
T Consensus 437 Vft~s~~~se~Ls~~L~~~-------------------------------------gi~~~vLhg~~~~rEr~ii~~ag~ 479 (844)
T 1tf5_A 437 VGTVAVETSELISKLLKNK-------------------------------------GIPHQVLNAKNHEREAQIIEEAGQ 479 (844)
T ss_dssp EEESCHHHHHHHHHHHHTT-------------------------------------TCCCEEECSSCHHHHHHHHTTTTS
T ss_pred EEECCHHHHHHHHHHHHHC-------------------------------------CCCEEEeeCCccHHHHHHHHHcCC
Confidence 9999999999999888643 123678899999999988888887
Q ss_pred CCCccEEEeccccccccCCC--------cEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 166 EGLLKVLVCTATLAWGVNLP--------AHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp--------~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.| +|+|||+.++||+|++ ...+||+ |+... +...|.||+|||||.| ..|.++.+++.++
T Consensus 480 ~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn----~d~p~---s~r~y~hr~GRTGRqG--~~G~s~~~vs~eD 546 (844)
T 1tf5_A 480 KG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVG----TERHE---SRRIDNQLRGRSGRQG--DPGITQFYLSMED 546 (844)
T ss_dssp TT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEE----SSCCS---SHHHHHHHHTTSSGGG--CCEEEEEEEETTS
T ss_pred CC--eEEEeCCccccCcCccccchhhhcCCcEEEE----ecCCC---CHHHHHhhcCccccCC--CCCeEEEEecHHH
Confidence 77 6999999999999999 7889997 44322 4455999999999999 7899998887554
No 148
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.39 E-value=5.4e-13 Score=174.00 Aligned_cols=123 Identities=20% Similarity=0.253 Sum_probs=61.6
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+++++||||++++.++.+++.|.+... ...+. . ..+.++|...+||||++++|..
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~----~~~~~---~------------------~~l~G~~~~~~h~~~~~~eR~~ 451 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPK----LSFLK---P------------------GILTGRGKTNQNTGMTLPAQKC 451 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTT----CCSCC---E------------------EC--------------------
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCC----ccccc---e------------------eEEEccCCCccccCCCHHHHHH
Confidence 467899999999999999988875310 00000 0 0012345566699999999999
Q ss_pred HHHHHhC-CCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHHH
Q 043190 160 TERLFSE-GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLAY 238 (1492)
Q Consensus 160 ve~~f~~-g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~~ 238 (1492)
+++.|++ |.++|||||+++++|||+|++++||+ ||+. ++..+|.||+|| ||. ..|.++++++..+...
T Consensus 452 v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~----~d~p---~s~~~~~Qr~GR-GR~---~~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 452 ILDAFKASGDHNILIATSVADEGIDIAQCNLVIL----YEYV---GNVIKMIQTRGR-GRA---RGSKCFLLTSNAGVIE 520 (696)
T ss_dssp ---------CCSCSEEEESSCCC---CCCSEEEE----ESCC-----CCCC-------------CCCEEEEEESCHHHHH
T ss_pred HHHHHHhcCCccEEEEechhhcCCcCccCCEEEE----eCCC---CCHHHHHHhhcc-CcC---CCceEEEEecCCCHHH
Confidence 9999998 99999999999999999999999997 7653 466779999999 996 4699999998776543
No 149
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.38 E-value=1e-12 Score=175.24 Aligned_cols=125 Identities=19% Similarity=0.153 Sum_probs=83.6
Q ss_pred CcccEEEEccc-CCCh---HHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcC
Q 043190 6 RMIRIVGLSAT-LPNY---LEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQG 81 (1492)
Q Consensus 6 ~~~riv~lSAT-l~n~---~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (1492)
++.|+++|||| .|+. .-+..++... .......+-.+.+.++... . ...+ ...+.. .+
T Consensus 249 ~~~q~ll~SAT~~p~~~~~~~~~~~l~i~------v~~~~~~~~~i~~~~~~~~--k----~~~L----~~ll~~---~~ 309 (1104)
T 4ddu_A 249 KPGILVVSSATAKPRGIRPLLFRDLLNFT------VGRLVSVARNITHVRISSR--S----KEKL----VELLEI---FR 309 (1104)
T ss_dssp CCCEEEEECBSSCCCSSTTHHHHHHTCCC------CCBCCCCCCCEEEEEESCC--C----HHHH----HHHHHH---HC
T ss_pred CCceEEEEcCCCCcHHHHHHHhhcceeEE------eccCCCCcCCceeEEEecC--H----HHHH----HHHHHh---cC
Confidence 67999999999 5542 2234444422 1112222334444443331 1 1111 111111 35
Q ss_pred CcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEE-EEcCCCChhhHHHH
Q 043190 82 HQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVG-VHHAGMLRSDRGLT 160 (1492)
Q Consensus 82 ~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~-~hhagl~~~~R~~v 160 (1492)
+++||||+|++.|+.++..|.+. ...++ .+|| +|+.
T Consensus 310 ~~~LVF~~s~~~a~~l~~~L~~~-------------------------------------g~~~~~~lhg-----~rr~- 346 (1104)
T 4ddu_A 310 DGILIFAQTEEEGKELYEYLKRF-------------------------------------KFNVGETWSE-----FEKN- 346 (1104)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHT-------------------------------------TCCEEESSSS-----HHHH-
T ss_pred CCEEEEECcHHHHHHHHHHHHhC-------------------------------------CCCeeeEecC-----cHHH-
Confidence 89999999999999999888653 22366 7787 3556
Q ss_pred HHHHhCCCccEEEe----ccccccccCCCc-EEEEEe
Q 043190 161 ERLFSEGLLKVLVC----TATLAWGVNLPA-HTVVIK 192 (1492)
Q Consensus 161 e~~f~~g~i~vlva----T~tla~Gvnlp~-~~vVI~ 192 (1492)
++.|++|+++|||| |+++++|||+|+ +++||+
T Consensus 347 l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~ 383 (1104)
T 4ddu_A 347 FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF 383 (1104)
T ss_dssp HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEE
T ss_pred HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEE
Confidence 99999999999999 999999999999 899997
No 150
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.38 E-value=1.3e-12 Score=162.18 Aligned_cols=193 Identities=12% Similarity=0.149 Sum_probs=129.6
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++.|||+|... .++|.+..+.. ++.+ +..+|+.-..+-..+... ...+...+ ...+.+....+.|+|||
T Consensus 378 kl~GmTGTa~te~~ef~~iY~l~----vv~I-Ptn~p~~R~d~~d~v~~~-~~~K~~al----~~~i~~~~~~gqpvLVf 447 (853)
T 2fsf_A 378 KLAGMTGTADTEAFEFSSIYKLD----TVVV-PTNRPMIRKDLPDLVYMT-EAEKIQAI----IEDIKERTAKGQPVLVG 447 (853)
T ss_dssp EEEEEECTTCCCHHHHHHHHCCE----EEEC-CCSSCCCCEECCCEEESS-HHHHHHHH----HHHHHHHHTTTCCEEEE
T ss_pred hhhcCCCCchhHHHHHHHHhCCc----EEEc-CCCCCceeecCCcEEEeC-HHHHHHHH----HHHHHHHhcCCCCEEEE
Confidence 68899999986 66677777543 4434 466776543321011111 12222221 22222333567899999
Q ss_pred EechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHhCC
Q 043190 88 VHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFSEG 167 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~~g 167 (1492)
|+|+..++.+++.|.+.. ....+.||++...+|..+.++|+.|
T Consensus 448 t~sie~se~Ls~~L~~~g-------------------------------------i~~~vLnak~~~rEa~iia~agr~G 490 (853)
T 2fsf_A 448 TISIEKSELVSNELTKAG-------------------------------------IKHNVLNAKFHANEAAIVAQAGYPA 490 (853)
T ss_dssp ESSHHHHHHHHHHHHHTT-------------------------------------CCCEECCTTCHHHHHHHHHTTTSTT
T ss_pred ECcHHHHHHHHHHHHHCC-------------------------------------CCEEEecCChhHHHHHHHHhcCCCC
Confidence 999999999998887531 2266789999999999999999999
Q ss_pred CccEEEeccccccccCCCcE-------------------------------------EEEEeccceecCCCCCcccCchh
Q 043190 168 LLKVLVCTATLAWGVNLPAH-------------------------------------TVVIKGTQLYDPKAGGWRDLGML 210 (1492)
Q Consensus 168 ~i~vlvaT~tla~Gvnlp~~-------------------------------------~vVI~~~~~~~~~~~~~~~~~~~ 210 (1492)
.|+|||+.++||+|++.. .+||+ |+.. -+...|.
T Consensus 491 --~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~----te~p---es~riy~ 561 (853)
T 2fsf_A 491 --AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG----TERH---ESRRIDN 561 (853)
T ss_dssp --CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE----SSCC---SSHHHHH
T ss_pred --eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE----ccCC---CCHHHHH
Confidence 699999999999999863 68886 3321 1344599
Q ss_pred hhhhccCCCCCCccceEEEEeCCccH-------HHHHHHh-----cCCCccccchhHhHHH
Q 043190 211 DIFGRAGRPQFDRSGEGIIITSHDKL-------AYYLRLL-----TSQLPIESQFISSLKD 259 (1492)
Q Consensus 211 ~~~GRAGR~~~d~~G~~i~~~~~~~~-------~~~~~~~-----~~~~~ies~l~~~l~~ 259 (1492)
|++|||||.| ..|.++.+++.++. ++..+++ ....||++.......+
T Consensus 562 qr~GRTGRqG--d~G~s~~fls~eD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~ 620 (853)
T 2fsf_A 562 QLRGRSGRQG--DAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIA 620 (853)
T ss_dssp HHHTTSSGGG--CCEEEEEEEETTSGGGGTTCCHHHHTTGGGGCCCTTCCCCCHHHHHHHH
T ss_pred hhccccccCC--CCeeEEEEecccHHHHHHhhHHHHHHHHHhhCCCCccccchHHHHHHHH
Confidence 9999999999 78999988875541 2333222 2235677776554433
No 151
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.36 E-value=8.8e-13 Score=163.43 Aligned_cols=107 Identities=26% Similarity=0.263 Sum_probs=81.4
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
+++++||||+|+++++.+++.|.+. ...+..+||+|++++
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~-------------------------------------g~~v~~lHG~l~q~e--- 434 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL-------------------------------------GINAVAYYRGLDVSV--- 434 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT-------------------------------------TCCEEEECTTSCGGG---
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC-------------------------------------CCcEEEecCCCCHHH---
Confidence 5789999999999999999888642 224889999999986
Q ss_pred HHHHHhCCCccEEEeccccccccCCCcEEEEEe-ccce-------ecCCCC------CcccCchhhhhhccCCCCCCccc
Q 043190 160 TERLFSEGLLKVLVCTATLAWGVNLPAHTVVIK-GTQL-------YDPKAG------GWRDLGMLDIFGRAGRPQFDRSG 225 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~-~~~~-------~~~~~~------~~~~~~~~~~~GRAGR~~~d~~G 225 (1492)
|+++..+|||||+++++|||+| +++||. |... |||..+ +.+..+|+||+||||| | ..|
T Consensus 435 ----r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g--~~G 506 (666)
T 3o8b_A 435 ----IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-G--RRG 506 (666)
T ss_dssp ----SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-S--SCE
T ss_pred ----HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-C--CCC
Confidence 4567779999999999999998 565553 2111 333221 2244579999999999 7 679
Q ss_pred eEEEEeCCcc
Q 043190 226 EGIIITSHDK 235 (1492)
Q Consensus 226 ~~i~~~~~~~ 235 (1492)
. +.++++.+
T Consensus 507 ~-i~lvt~~e 515 (666)
T 3o8b_A 507 I-YRFVTPGE 515 (666)
T ss_dssp E-EEESCCCC
T ss_pred E-EEEEecch
Confidence 9 88887655
No 152
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.36 E-value=1.4e-12 Score=171.47 Aligned_cols=124 Identities=17% Similarity=0.226 Sum_probs=61.3
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||++++.++.+++.|.+.. ....+. . ..+.+.+...+||||++.+|.
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~----~~~~~~---~------------------~~l~G~~~~~~hg~~~~~eR~ 683 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENP----ILNYIK---P------------------GVLMGRGRRDQTTGMTLPSQK 683 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCS----TTCSCC---C------------------EEC------------------
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCc----cccccc---c------------------eEEEecCCcccCCCCCHHHHH
Confidence 346899999999999999988886421 000000 0 001244567789999999999
Q ss_pred HHHHHHhC-CCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 159 LTERLFSE-GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 159 ~ve~~f~~-g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
.+++.|++ |.++|||||+++++|||+|++++||+ ||+ +++...|.||+|| ||. ..|.++++++..+..
T Consensus 684 ~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~----yd~---p~s~~~~iQr~GR-GR~---~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 684 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY---SGNVTKMIQVRGR-GRA---AGSKCILVTSKTEVV 752 (797)
T ss_dssp ----------CCSEEEEECC-------CCCSEEEE----ESC---CSCHHHHHTC-----------CCCEEEEECCHHHH
T ss_pred HHHHHhhccCCceEEEEcCchhcCCCchhCCEEEE----eCC---CCCHHHHHHhcCC-CCC---CCceEEEEEeCCcHH
Confidence 99999999 99999999999999999999999996 775 3577789999999 997 579999999877654
Q ss_pred H
Q 043190 238 Y 238 (1492)
Q Consensus 238 ~ 238 (1492)
.
T Consensus 753 e 753 (797)
T 4a2q_A 753 E 753 (797)
T ss_dssp H
T ss_pred H
Confidence 3
No 153
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.35 E-value=1.2e-12 Score=163.81 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=68.0
Q ss_pred cEEEEcCCCChhhHHHHHHHHhCCCccEEEec-cccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCC
Q 043190 144 AVGVHHAGMLRSDRGLTERLFSEGLLKVLVCT-ATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD 222 (1492)
Q Consensus 144 gv~~hhagl~~~~R~~ve~~f~~g~i~vlvaT-~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d 222 (1492)
.++++||++++++|..+++.|++|..+||||| +++++|+|+|++++||. +++. ++...+.||+|||||.|
T Consensus 373 ~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~----~~~~---~s~~~~~Q~~GR~gR~g-- 443 (510)
T 2oca_A 373 KVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL----AHGV---KSKIIVLQTIGRVLRKH-- 443 (510)
T ss_dssp SEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE----SSCC---CSCCHHHHHHHHHHTTT--
T ss_pred CeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE----eCCC---CCHHHHHHHHhcccccC--
Confidence 38999999999999999999999999999999 99999999999999995 5543 35567999999999999
Q ss_pred ccceEEEEeC
Q 043190 223 RSGEGIIITS 232 (1492)
Q Consensus 223 ~~G~~i~~~~ 232 (1492)
..|.++++++
T Consensus 444 ~~~~~v~i~~ 453 (510)
T 2oca_A 444 GSKTIATVWD 453 (510)
T ss_dssp CCCCCCEEEE
T ss_pred CCCceEEEEE
Confidence 4453444443
No 154
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.33 E-value=1.9e-13 Score=182.78 Aligned_cols=69 Identities=19% Similarity=0.343 Sum_probs=54.6
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
++++||||+|+++|+.+++.|.+. ..++++||+| ..+
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~--------------------------------------~~v~~lhg~~-----~~~ 311 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK--------------------------------------FRIGIVTATK-----KGD 311 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS--------------------------------------SCEEECTTSS-----SHH
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc--------------------------------------cCeeEEeccH-----HHH
Confidence 678999999999999988766431 2389999998 378
Q ss_pred HHHHhCCCccEEEe----ccccccccCCCcE-EEEEe
Q 043190 161 ERLFSEGLLKVLVC----TATLAWGVNLPAH-TVVIK 192 (1492)
Q Consensus 161 e~~f~~g~i~vlva----T~tla~Gvnlp~~-~vVI~ 192 (1492)
++.|++|.++|||| |+++++|||+|++ ++||+
T Consensus 312 l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~ 348 (1054)
T 1gku_B 312 YEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVF 348 (1054)
T ss_dssp HHHHHHTSCSEEEEECC------CCSCCTTTCCEEEE
T ss_pred HHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEE
Confidence 89999999999999 9999999999994 77776
No 155
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.33 E-value=5.9e-12 Score=156.39 Aligned_cols=191 Identities=16% Similarity=0.192 Sum_probs=128.3
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEE--EEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQ--YIGISEPNFAARNELLSEICYKKVVDSLRQGHQAM 85 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (1492)
++.|||+|... .++|.+..+.. ++.+ +..+|+.-..+ ++... ...+...+ ...+.+....+.|+|
T Consensus 397 kL~GMTGTa~te~~Ef~~iY~l~----vv~I-Ptn~p~~R~d~~d~v~~t---~~~K~~al----~~~i~~~~~~gqpvL 464 (922)
T 1nkt_A 397 KLAGMTGTAQTEAAELHEIYKLG----VVSI-PTNMPMIREDQSDLIYKT---EEAKYIAV----VDDVAERYAKGQPVL 464 (922)
T ss_dssp EEEEEESCCGGGHHHHHHHHCCE----EEEC-CCSSCCCCEECCCEEESC---HHHHHHHH----HHHHHHHHHTTCCEE
T ss_pred hhhccccCchhHHHHHHHHhCCC----eEEe-CCCCCcccccCCcEEEeC---HHHHHHHH----HHHHHHHHhcCCcEE
Confidence 68899999976 56677766543 4333 45666543321 11111 12222221 223333335678999
Q ss_pred EEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHHHh
Q 043190 86 VFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERLFS 165 (1492)
Q Consensus 86 VF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~f~ 165 (1492)
|||+|+..++.+++.|.+.. ....+.||+....+|..+.++|+
T Consensus 465 Vft~Sie~sE~Ls~~L~~~G-------------------------------------i~~~vLnak~~~rEa~iia~agr 507 (922)
T 1nkt_A 465 IGTTSVERSEYLSRQFTKRR-------------------------------------IPHNVLNAKYHEQEATIIAVAGR 507 (922)
T ss_dssp EEESCHHHHHHHHHHHHHTT-------------------------------------CCCEEECSSCHHHHHHHHHTTTS
T ss_pred EEECCHHHHHHHHHHHHHCC-------------------------------------CCEEEecCChhHHHHHHHHhcCC
Confidence 99999999999998887531 22678899999889999999999
Q ss_pred CCCccEEEeccccccccCCCcE----------------------------------------------------EEEEec
Q 043190 166 EGLLKVLVCTATLAWGVNLPAH----------------------------------------------------TVVIKG 193 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvnlp~~----------------------------------------------------~vVI~~ 193 (1492)
.| .|+|||+.++||+|++.. .+||+
T Consensus 508 ~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~- 584 (922)
T 1nkt_A 508 RG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG- 584 (922)
T ss_dssp TT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE-
T ss_pred CC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe-
Confidence 88 699999999999999863 67886
Q ss_pred cceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccH-------HHHHHH---h--cCCCccccchhHhHHH
Q 043190 194 TQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL-------AYYLRL---L--TSQLPIESQFISSLKD 259 (1492)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~-------~~~~~~---~--~~~~~ies~l~~~l~~ 259 (1492)
|+.. -+...|.|++||+||.| ..|.++.+++.++. +...++ + ....||++.......+
T Consensus 585 ---te~p---es~riy~qr~GRTGRqG--dpG~s~fflSleD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~ie 654 (922)
T 1nkt_A 585 ---TERH---ESRRIDNQLRGRSGRQG--DPGESRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPIEAKMVTRAIK 654 (922)
T ss_dssp ---CSCC---SSHHHHHHHHHTSSGGG--CCEEEEEEEETTSHHHHHTTHHHHHHHHHHTTCCTTSCCCCHHHHHHHH
T ss_pred ---ccCC---CCHHHHHHHhcccccCC--CCeeEEEEechhHHHHHHhhhHHHHHHHHHhCCCCCcccccHHHHHHHH
Confidence 3321 13345999999999999 78999988876552 122222 2 2345788876554333
No 156
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.30 E-value=8.4e-13 Score=163.49 Aligned_cols=110 Identities=14% Similarity=0.184 Sum_probs=90.0
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||++++.++.+++.| ++.++||++++.+|.
T Consensus 347 ~~~~k~lvF~~~~~~~~~l~~~l------------------------------------------~~~~~~g~~~~~~R~ 384 (472)
T 2fwr_A 347 HRKDKIIIFTRHNELVYRISKVF------------------------------------------LIPAITHRTSREERE 384 (472)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHT------------------------------------------TCCBCCSSSCSHHHH
T ss_pred CCCCcEEEEECCHHHHHHHHHHh------------------------------------------CcceeeCCCCHHHHH
Confidence 35789999999999988877654 155789999999999
Q ss_pred HHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCC-ccceEEEEeCCccHH
Q 043190 159 LTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD-RSGEGIIITSHDKLA 237 (1492)
Q Consensus 159 ~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d-~~G~~i~~~~~~~~~ 237 (1492)
.+++.|++|.++|||||+++++|+|+|+.++||. |++. ++...+.||+|||||.|.. ....++.+++.+..+
T Consensus 385 ~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~----~~~~---~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t~e 457 (472)
T 2fwr_A 385 EILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI----MSGS---GSAREYIQRLGRILRPSKGKKEAVLYELISRGTGE 457 (472)
T ss_dssp THHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE----ECCS---SCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSCC-
T ss_pred HHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE----ECCC---CCHHHHHHHHhhccCCCCCCceEEEEEEEeCCCch
Confidence 9999999999999999999999999999999996 6543 4666799999999999954 344555566655443
No 157
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.25 E-value=2.7e-11 Score=154.15 Aligned_cols=117 Identities=16% Similarity=0.041 Sum_probs=87.2
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||++++.|+.+++.|.+...... ..-...+..+||+++ ++|.
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~-----------------------------~~~~~~~~~i~g~~~-~~r~ 486 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLS-----------------------------RKHPDYVARVTSEEG-KIGK 486 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHH-----------------------------TTCTTSEEECSSTTH-HHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhh-----------------------------ccCCCeEEEEeCCCh-HHHH
Confidence 3457999999999999999999876533200 000123777888875 4799
Q ss_pred HHHHHHhCCCcc---EEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeC
Q 043190 159 LTERLFSEGLLK---VLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITS 232 (1492)
Q Consensus 159 ~ve~~f~~g~i~---vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~ 232 (1492)
.+++.|++|..+ |||||+++++|||+|++++||. |++. ++...|.||+|||||.+.|..+..+++.+
T Consensus 487 ~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~----~~~~---~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D 556 (590)
T 3h1t_A 487 GHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL----ARVV---NSMSEFKQIVGRGTRLREDYGKLWFNIID 556 (590)
T ss_dssp HHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE----ESCC---CCHHHHHHHHTTSCCCBGGGTBSCEEEEE
T ss_pred HHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE----EecC---CChHHHHHHHhhhcccCccCCCCEEEEEe
Confidence 999999998876 8899999999999999999995 5543 35566999999999988542333333433
No 158
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.21 E-value=5.1e-11 Score=133.79 Aligned_cols=118 Identities=16% Similarity=0.149 Sum_probs=81.4
Q ss_pred HHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhh
Q 043190 77 SLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSD 156 (1492)
Q Consensus 77 ~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~ 156 (1492)
....+.++||||+++..++.++..|.+.. +..+..+||++++.+
T Consensus 108 ~~~~~~kvlIFs~~~~~~~~l~~~L~~~~------------------------------------g~~~~~l~G~~~~~~ 151 (271)
T 1z5z_A 108 ALDEGDKIAIFTQFVDMGKIIRNIIEKEL------------------------------------NTEVPFLYGELSKKE 151 (271)
T ss_dssp HHHTTCCEEEEESCHHHHHHHHHHHHHHH------------------------------------CSCCCEECTTSCHHH
T ss_pred HHhCCCeEEEEeccHHHHHHHHHHHHHhc------------------------------------CCcEEEEECCCCHHH
Confidence 33578899999999999888887775421 223678899999999
Q ss_pred HHHHHHHHhCC-Ccc-EEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCc
Q 043190 157 RGLTERLFSEG-LLK-VLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHD 234 (1492)
Q Consensus 157 R~~ve~~f~~g-~i~-vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~ 234 (1492)
|..+.+.|++| .++ +|+||.++++|+|+++.+.||. ||+ +|+...+.|++||++|.|......++.++...
T Consensus 152 R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~----~d~---~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~ 224 (271)
T 1z5z_A 152 RDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR---WWNPAVEDQATDRVYRIGQTRNVIVHKLISVG 224 (271)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE----CSC---CSCTTTC--------------CCEEEEEEETT
T ss_pred HHHHHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEE----ECC---CCChhHHHHHHHhccccCCCCceEEEEEeeCC
Confidence 99999999999 788 7899999999999999999986 554 24556699999999999965555556666655
Q ss_pred cHH
Q 043190 235 KLA 237 (1492)
Q Consensus 235 ~~~ 237 (1492)
..+
T Consensus 225 TiE 227 (271)
T 1z5z_A 225 TLE 227 (271)
T ss_dssp SHH
T ss_pred CHH
Confidence 443
No 159
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.15 E-value=2.5e-11 Score=161.08 Aligned_cols=122 Identities=16% Similarity=0.217 Sum_probs=61.6
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.+.++||||++++.++.+++.|.+...-.+ ... ..+.+.+...+||+|++.+|..
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~-ik~------------------------~~l~G~~~~~~hg~m~~~eR~~ 684 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNY-IKP------------------------GVLMGRGRRDQTTGMTLPSQKG 684 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSS-CCC------------------------EEC-------------------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccc-cce------------------------eEEecCCCcccCCCCCHHHHHH
Confidence 468999999999999999988865310000 000 0012345667899999999999
Q ss_pred HHHHHhC-CCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccHH
Q 043190 160 TERLFSE-GLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKLA 237 (1492)
Q Consensus 160 ve~~f~~-g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~~ 237 (1492)
+++.|++ |.++|||||+++++|||+|++++||+ ||+ +++..+|.||+|| ||. ..|.++++++..+.+
T Consensus 685 il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~----yD~---p~s~~~~iQr~GR-GR~---~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 685 VLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVL----YEY---SGNVTKMIQVRGR-GRA---AGSKCILVTSKTEVV 752 (936)
T ss_dssp ---------CCSEEEEECC------CCCCSEEEE----ESC---CSCSHHHHCC-----------CCCEEEEESCHHHH
T ss_pred HHHHhhccCCeeEEEEeCchhcCCcchhCCEEEE----eCC---CCCHHHHHHhcCC-CCC---CCCEEEEEEeCCCHH
Confidence 9999999 99999999999999999999999996 775 3577789999999 997 469999998876554
No 160
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.12 E-value=1.1e-10 Score=131.06 Aligned_cols=113 Identities=16% Similarity=0.153 Sum_probs=81.3
Q ss_pred CCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHHH
Q 043190 916 PTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVEE 995 (1492)
Q Consensus 916 ~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~ 995 (1492)
.+.++||||+++..+..++..|... .+..+..+||+++..+|..+++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~---------------------------------~g~~~~~l~G~~~~~~R~~~i~ 157 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKE---------------------------------LNTEVPFLYGELSKKERDDIIS 157 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH---------------------------------HCSCCCEECTTSCHHHHHHHHH
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHh---------------------------------cCCcEEEEECCCCHHHHHHHHH
Confidence 5789999999999888887766331 2567888999999999999999
Q ss_pred HHhcC-Cce-EEEeccccccccCCCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Q 043190 996 LFANN-KIQ-VLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQYDQHGKAVILVHEPK 1071 (1492)
Q Consensus 996 ~f~~g-~~~-vLvaT~~l~~Gvdip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g~~~~G~~i~l~~~~~ 1071 (1492)
.|++| ..+ +|++|+++++|+|++++++||+ ||+ +.++..+.||+||++|.|......+|.++..+.
T Consensus 158 ~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~----~d~------~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 158 KFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR------WWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp HHHHCTTCCEEEEECCTTCCCCCCTTCSEEEE----CSC------CSCTTTC--------------CCEEEEEEETTS
T ss_pred HhcCCCCCCEEEEehhhhcCCcCcccCCEEEE----ECC------CCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 99998 777 7899999999999999999998 553 235778999999999999766666777777654
No 161
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.11 E-value=2.4e-10 Score=151.71 Aligned_cols=114 Identities=18% Similarity=0.209 Sum_probs=92.2
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||++++.++.++..|.+. .+..++.+||+|++.+|.
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~------------------------------------~g~~~~~lhG~~~~~~R~ 544 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLRER------------------------------------EGIRAAVFHEGMSIIERD 544 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTT------------------------------------TCCCEEEECTTSCTTHHH
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHH------------------------------------cCCcEEEEeCCCCHHHHH
Confidence 45789999999999999888877531 133489999999999999
Q ss_pred HHHHHHhCCC--ccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 159 LTERLFSEGL--LKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 159 ~ve~~f~~g~--i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.+++.|++|. ++|||||+++++|+|+|..++||. ||+. |+...|.|++||+||.|.......+.+.....
T Consensus 545 ~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~----~d~p---~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t 616 (968)
T 3dmq_A 545 RAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVM----FDLP---FNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKT 616 (968)
T ss_dssp HHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEEC----SSCC---SSHHHHHHHHHTTSCSSSCSCCEEEEEEETTS
T ss_pred HHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEE----ecCC---CCHHHHHHHhhccccCCCCceEEEEEecCCCh
Confidence 9999999998 999999999999999999999986 6653 46677999999999999443223444344443
No 162
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.01 E-value=7.5e-10 Score=138.03 Aligned_cols=121 Identities=16% Similarity=0.156 Sum_probs=92.6
Q ss_pred HHHHHhcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCC
Q 043190 74 VVDSLRQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGML 153 (1492)
Q Consensus 74 ~~~~~~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~ 153 (1492)
+.+...++.++||||+++..++.++..|.+.. ..++.++||+++
T Consensus 334 l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~------------------------------------~~~~~~~~g~~~ 377 (500)
T 1z63_A 334 IEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL------------------------------------NTEVPFLYGELS 377 (500)
T ss_dssp HHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH------------------------------------TCCCCEEETTSC
T ss_pred HHHHHccCCcEEEEEehHHHHHHHHHHHHHhh------------------------------------CCCeEEEECCCC
Confidence 33344578899999999999888877775421 234788999999
Q ss_pred hhhHHHHHHHHhCC-Ccc-EEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEe
Q 043190 154 RSDRGLTERLFSEG-LLK-VLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 154 ~~~R~~ve~~f~~g-~i~-vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
+++|..+.+.|++| ..+ +|+||++++.|+|+|+.++||. ||+ +|+...+.|++||++|.|......++.++
T Consensus 378 ~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~----~d~---~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv 450 (500)
T 1z63_A 378 KKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIH----FDR---WWNPAVEDQATDRVYRIGQTRNVIVHKLI 450 (500)
T ss_dssp HHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEE----SSC---CSCC---CHHHHTTTTTTTTSCEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEE----eCC---CCCcchHHHHHHHHHHcCCCCeeEEEEEE
Confidence 99999999999999 566 7999999999999999988886 554 24566699999999999976666667666
Q ss_pred CCccHH
Q 043190 232 SHDKLA 237 (1492)
Q Consensus 232 ~~~~~~ 237 (1492)
.....+
T Consensus 451 ~~~tie 456 (500)
T 1z63_A 451 SVGTLE 456 (500)
T ss_dssp ETTSHH
T ss_pred eCCCHH
Confidence 655443
No 163
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.75 E-value=3.7e-08 Score=125.46 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=93.3
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.+.++||||+++..++.++..|... +..+...||+++.++|..
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~-------------------------------------g~~~~~l~G~~~~~~R~~ 457 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNR-------------------------------------RYLYVRLDGTMSIKKRAK 457 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHH-------------------------------------TCCEEEECSSCCHHHHHH
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHC-------------------------------------CCCEEEEeCCCCHHHHHH
Confidence 4789999999999888877766542 234778899999999999
Q ss_pred HHHHHhCCCcc---EEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCccH
Q 043190 160 TERLFSEGLLK---VLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDKL 236 (1492)
Q Consensus 160 ve~~f~~g~i~---vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~~ 236 (1492)
+.+.|++|... +|+||.+++.|+|+++.+.||. ||+ .|+...+.|++||++|.|......++.++.....
T Consensus 458 ~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~----~d~---~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ti 530 (644)
T 1z3i_X 458 IVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVM----FDP---DWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTI 530 (644)
T ss_dssp HHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEE----CSC---CSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSH
T ss_pred HHHHhcCCCCCcEEEEEecccccCCcccccCCEEEE----ECC---CCCccHHHHHHHhhhhcCCCCceEEEEEEECCCH
Confidence 99999999764 8999999999999999999986 664 3566779999999999997666667766665543
Q ss_pred H
Q 043190 237 A 237 (1492)
Q Consensus 237 ~ 237 (1492)
+
T Consensus 531 E 531 (644)
T 1z3i_X 531 E 531 (644)
T ss_dssp H
T ss_pred H
Confidence 3
No 164
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.67 E-value=4.9e-08 Score=127.74 Aligned_cols=115 Identities=18% Similarity=0.227 Sum_probs=94.8
Q ss_pred hcCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHH
Q 043190 79 RQGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRG 158 (1492)
Q Consensus 79 ~~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~ 158 (1492)
..++++||||..+.....++..|... +..+...||+++..+|.
T Consensus 570 ~~g~kvLIFsq~~~~ld~L~~~L~~~-------------------------------------g~~~~~i~G~~~~~eR~ 612 (800)
T 3mwy_W 570 KDGHRVLIFSQMVRMLDILGDYLSIK-------------------------------------GINFQRLDGTVPSAQRR 612 (800)
T ss_dssp TTTCCEEEEESCHHHHHHHHHHHHHH-------------------------------------TCCCEEESTTSCHHHHH
T ss_pred hCCCeEEEEechHHHHHHHHHHHHhC-------------------------------------CCCEEEEeCCCCHHHHH
Confidence 56789999999999888877777543 23478899999999999
Q ss_pred HHHHHHhCCCc---cEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCCccceEEEEeCCcc
Q 043190 159 LTERLFSEGLL---KVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFDRSGEGIIITSHDK 235 (1492)
Q Consensus 159 ~ve~~f~~g~i---~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d~~G~~i~~~~~~~ 235 (1492)
.+.+.|++|.. .+|+||.+++.|||||+.++||. ||+ .|+...+.|++|||+|.|......++.++....
T Consensus 613 ~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~----~D~---~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 613 ISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVI----FDS---DWNPQADLQAMARAHRIGQKNHVMVYRLVSKDT 685 (800)
T ss_dssp HHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEE----SSC---CSCSHHHHHHHTTTSCSSCCSCEEEEEEEETTS
T ss_pred HHHHHhhCCCCCceEEEEecccccCCCCccccceEEE----ecC---CCChhhHHHHHHHHHhcCCCceEEEEEEecCCC
Confidence 99999999665 49999999999999998888885 664 356667999999999999777777777777665
Q ss_pred HH
Q 043190 236 LA 237 (1492)
Q Consensus 236 ~~ 237 (1492)
.+
T Consensus 686 iE 687 (800)
T 3mwy_W 686 VE 687 (800)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 165
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.41 E-value=8.5e-07 Score=116.64 Aligned_cols=70 Identities=14% Similarity=0.190 Sum_probs=56.7
Q ss_pred hhHHHHHHHHhCCCccEEEeccccccccCCCcEEEEEeccceecCCCCCcccCchhhhhhccCCCCCC--ccceEEEEeC
Q 043190 155 SDRGLTERLFSEGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDIFGRAGRPQFD--RSGEGIIITS 232 (1492)
Q Consensus 155 ~~R~~ve~~f~~g~i~vlvaT~tla~Gvnlp~~~vVI~~~~~~~~~~~~~~~~~~~~~~GRAGR~~~d--~~G~~i~~~~ 232 (1492)
.+|..+.+.|++|.++|||+|+.+++|+|+|...+++ +|. +++...++|++||+||.+.+ +.|.++-+..
T Consensus 636 ~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~tly-----lDk---pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 636 NYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLNTLF-----VDK---NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRD 707 (1038)
T ss_dssp HHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEEEEE-----EES---CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSC
T ss_pred HHHHHHHHHHHcCCCeEEEEcchHHhCcCcccccEEE-----Ecc---CCCccceeehhhccCcCCCCCCCcEEEEEccc
Confidence 3689999999999999999999999999999998776 553 23556799999999999753 3466665554
No 166
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.16 E-value=1e-05 Score=101.67 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=54.4
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCch--HHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHH
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKT--ISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDR 757 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT--~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~ 757 (1492)
++.|.+++..++ +++.+++.||+|+||| +.++++.+..+....+.++++++||..+|.++.+.+...
T Consensus 151 ~~~Q~~Ai~~~l-~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVAL-TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHH-TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHh-cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHH
Confidence 789999999988 6889999999999999 455666666543334679999999999999887766553
No 167
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.78 E-value=7e-05 Score=95.46 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
..||+-|.+|+..++....-.+|.||+|+|||.+..-.|.+.+.. +.++|+++||...+.++.+++..
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~--~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ--GLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEcCchHHHHHHHHHHHh
Confidence 469999999999988555678999999999999877666666654 78999999999999998887654
No 168
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.60 E-value=0.00018 Score=91.10 Aligned_cols=70 Identities=21% Similarity=0.309 Sum_probs=55.5
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
.+..+++.|.+++..++ .+..++|.||+|+|||.+....+.... ..++.++++++||...+.++.+.+.+
T Consensus 177 ~~~~ln~~Q~~av~~~l-~~~~~li~GppGTGKT~~~~~~i~~l~-~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 177 GLPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIVYHLA-RQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp TSCCCCHHHHHHHHHHH-TCSEEEEECCTTSCHHHHHHHHHHHHH-TSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCCHHHHHHHHHHh-cCCCeEEECCCCCCHHHHHHHHHHHHH-HcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 34579999999999988 567899999999999987654444333 33478999999999999988777643
No 169
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=0.0002 Score=92.34 Aligned_cols=70 Identities=23% Similarity=0.387 Sum_probs=56.1
Q ss_pred CCCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
.+..+|+.|.+|+..++ .+..++|.||+|+|||.+....+...+.. ++.++++++||...+.++.+++.+
T Consensus 357 ~~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 357 NFAQLNSSQSNAVSHVL-QRPLSLIQGPPGTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp TSCCCCHHHHHHHHHHT-TCSEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHh-cCCCEEEECCCCCCHHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHh
Confidence 34679999999999988 56688999999999998765544433322 368999999999999998887765
No 170
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=97.53 E-value=0.00016 Score=89.82 Aligned_cols=115 Identities=14% Similarity=0.081 Sum_probs=61.8
Q ss_pred HHHHHHh-cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCC
Q 043190 73 KVVDSLR-QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAG 151 (1492)
Q Consensus 73 ~~~~~~~-~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhag 151 (1492)
.+.+.+. .++.+|||++|.+..+.+++.+.. ..+-. ++.
T Consensus 375 ~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~---------------------------------------~~~~~-q~~ 414 (540)
T 2vl7_A 375 LLKRIYENSSKSVLVFFPSYEMLESVRIHLSG---------------------------------------IPVIE-ENK 414 (540)
T ss_dssp HHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT---------------------------------------SCEEE-STT
T ss_pred HHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc---------------------------------------CceEe-cCC
Confidence 3444433 356899999999999888754421 11322 333
Q ss_pred CChhhHHHHHHHHhCCCccEEE--eccccccccCCCc----EEEEEeccceecCCCC----------------Cccc---
Q 043190 152 MLRSDRGLTERLFSEGLLKVLV--CTATLAWGVNLPA----HTVVIKGTQLYDPKAG----------------GWRD--- 206 (1492)
Q Consensus 152 l~~~~R~~ve~~f~~g~i~vlv--aT~tla~Gvnlp~----~~vVI~~~~~~~~~~~----------------~~~~--- 206 (1492)
. ..|..+.+.|++|. .||+ ||..++.|||+|+ .+.||...-+|.+... ++.+
T Consensus 415 ~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~~ 491 (540)
T 2vl7_A 415 K--TRHEEVLELMKTGK-YLVMLVMRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSIIH 491 (540)
T ss_dssp T--CCHHHHHHHHHTSC-CEEEEEC---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred C--CcHHHHHHHHhcCC-eEEEEEecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHHH
Confidence 2 57889999999875 5766 8999999999997 3444433344443311 1111
Q ss_pred ----CchhhhhhccCCCCCCccceEEEEe
Q 043190 207 ----LGMLDIFGRAGRPQFDRSGEGIIIT 231 (1492)
Q Consensus 207 ----~~~~~~~GRAGR~~~d~~G~~i~~~ 231 (1492)
..+.|-+||+-|...| .|..+++-
T Consensus 492 ~~~~~~~~Q~~GR~iR~~~D-~g~v~llD 519 (540)
T 2vl7_A 492 DLTAIVIKQTIGRAFRDPND-YVKIYLCD 519 (540)
T ss_dssp HHHHHHHHHHHHHHCCSTTC-CCEEEEES
T ss_pred HHHHHHHHHHhCCcccCCCc-cEEEEEEc
Confidence 2244689999998655 67665553
No 171
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.53 E-value=0.00015 Score=88.31 Aligned_cols=67 Identities=18% Similarity=0.362 Sum_probs=50.3
Q ss_pred CCCCCCHHHHHHHHhhhcC----CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHH
Q 043190 685 NFSHFNPIQTQIFHILYHT----DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMN 752 (1492)
Q Consensus 685 ~~~~l~~~Q~~~i~~~~~~----~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~ 752 (1492)
.|..|++-|.+++..++.. ...++|.|+.|||||.+.. .+...+...+...+++++||...|.++.+
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~-~~~~~l~~~~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTK-FIIEALISTGETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHH-HHHHHHHHTTCCCEEEEESSHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHH-HHHHHHHhcCCceEEEecCcHHHHHHHHh
Confidence 5778999999999876532 3499999999999998664 44444444333589999999987766544
No 172
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.41 E-value=0.00031 Score=90.42 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=54.6
Q ss_pred CCCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHH
Q 043190 686 FSHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKD 756 (1492)
Q Consensus 686 ~~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~ 756 (1492)
...+++.|.+++..++ .+...+|.||+|+|||.+..-.+ ..+...++.++++++||...+.++.+.+..
T Consensus 354 ~~~Ln~~Q~~Av~~~l-~~~~~lI~GppGTGKT~ti~~~i-~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVL-QRPLSLIQGPPGTGKTVTSATIV-YHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp SCCCCHHHHHHHHHHH-TSSEEEEECCTTSCHHHHHHHHH-HHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHhc-cCCeEEEEcCCCCCHHHHHHHHH-HHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4569999999999988 56788999999999998765443 333333578999999999999887776643
No 173
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.39 E-value=0.00062 Score=84.50 Aligned_cols=62 Identities=21% Similarity=0.260 Sum_probs=49.2
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMN 752 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~ 752 (1492)
.+++.|.+++..++ +++.++|.||.|+|||+... .++..+.. .+.++++++||...+..+.+
T Consensus 189 ~L~~~Q~~Av~~~~-~~~~~~I~G~pGTGKTt~i~-~l~~~l~~-~g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLA-GHRLVVLTGGPGTGKSTTTK-AVADLAES-LGLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHT-TCSEEEEECCTTSCHHHHHH-HHHHHHHH-TTCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-hCCEEEEEcCCCCCHHHHHH-HHHHHHHh-cCCeEEEecCcHHHHHHhHh
Confidence 48999999999988 67899999999999998643 34444443 47899999999988776443
No 174
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=96.94 E-value=0.0074 Score=75.64 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=52.5
Q ss_pred cEEEEcccCCC-hHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeCCchhHHHHHhhHHHHHHHHHHHhcCCcEEEE
Q 043190 9 RIVGLSATLPN-YLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISEPNFAARNELLSEICYKKVVDSLRQGHQAMVF 87 (1492)
Q Consensus 9 riv~lSATl~n-~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lVF 87 (1492)
++-|||.|... .++|.+..+.. ++ .-++.||+--...--.+-.. ...+... +.+.+.+....|.|+||+
T Consensus 380 kLsGMTGTA~tE~~Ef~~iY~l~----Vv-~IPTn~p~~R~D~~d~vy~t-~~~K~~A----Iv~eI~~~~~~GqPVLVg 449 (997)
T 2ipc_A 380 KRAGMTGTAKTEEKEFQEIYGMD----VV-VVPTNRPVIRKDFPDVVYRT-EKGKFYA----VVEEIAEKYERGQPVLVG 449 (997)
T ss_dssp EEEEEESSCGGGHHHHHHHHCCC----EE-ECCCSSCCCCEEEEEEEESS-HHHHHHH----HHHHHHHHHHHTCCEEEE
T ss_pred HheecCCCchHHHHHHHHHhCCC----EE-EcCCCCCcccccCCCeEEcC-HHHHHHH----HHHHHHHHHHCCCCEEEE
Confidence 68899999875 66677776654 33 34567776433321111111 1222221 223344445779999999
Q ss_pred EechHHHHHHHHHHH
Q 043190 88 VHSRKDTVKTAQKLV 102 (1492)
Q Consensus 88 ~~sr~~~~~~a~~l~ 102 (1492)
|.|-...+.+++.|.
T Consensus 450 T~SIe~SE~LS~~L~ 464 (997)
T 2ipc_A 450 TISIEKSERLSQMLK 464 (997)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred eCCHHHHHHHHHHHh
Confidence 999999999999887
No 175
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=96.85 E-value=0.0041 Score=78.11 Aligned_cols=176 Identities=15% Similarity=0.237 Sum_probs=94.7
Q ss_pred ccEEEEcccCCChHHHHHhcCCCCCCceEeecCCcccccceEEEEEeeC--CchhHHHH-HhhHHHHHHHHHHH-hcCCc
Q 043190 8 IRIVGLSATLPNYLEVAQFLRVNPEMGLFFFDSSYRPIPLAQQYIGISE--PNFAARNE-LLSEICYKKVVDSL-RQGHQ 83 (1492)
Q Consensus 8 ~riv~lSATl~n~~~~a~~l~~~~~~~~~~~~~~~rpv~l~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~-~~~~~ 83 (1492)
.-+|++|||+.....+++.|+.. ...+.+++.+.+-.. .++.... ..+..+.. .... ..+.+.+.+ ..++.
T Consensus 376 ~~~il~SaTL~p~~~~~~~lGl~--~~~~~~~spf~~~~~--~~~~~~~~~~~~~~r~~~~~~~-~~~~i~~l~~~~~g~ 450 (620)
T 4a15_A 376 SKTIHMSGTLDPFDFYSDITGFE--IPFKKIGEIFPPENR--YIAYYDGVSSKYDTLDEKELDR-MATVIEDIILKVKKN 450 (620)
T ss_dssp SEEEEEESSCCSHHHHHHHHCCC--CCEEECCCCSCGGGE--EEEEECCC-------CHHHHHH-HHHHHHHHHHHHCSC
T ss_pred CeEEEEccCCCcHHHHHHHhCCC--ceeeecCCCCCHHHe--EEEEeCCCCCcCCCCCHHHHHH-HHHHHHHHHHhCCCC
Confidence 35799999999988999999875 233334443322111 1111111 11111111 1111 122333333 23567
Q ss_pred EEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHHHHH
Q 043190 84 AMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLTERL 163 (1492)
Q Consensus 84 ~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ve~~ 163 (1492)
+|||++|.+..+.++..+. . . +.. -.-|++..+|..+.+.
T Consensus 451 ~lvlF~Sy~~l~~v~~~l~-~------~--------------------------------~~~-~~q~~~~~~~~~ll~~ 490 (620)
T 4a15_A 451 TIVYFPSYSLMDRVENRVS-F------E--------------------------------HMK-EYRGIDQKELYSMLKK 490 (620)
T ss_dssp EEEEESCHHHHHHHTSSCC-S------C--------------------------------CEE-CCTTCCSHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHH-h------c--------------------------------chh-ccCCCChhHHHHHHHH
Confidence 9999999998877765442 0 0 001 1345666789999999
Q ss_pred HhCCCccEEEecc--ccccccCCCc---EEEEEeccceecCCC--------------CCcc-c------CchhhhhhccC
Q 043190 164 FSEGLLKVLVCTA--TLAWGVNLPA---HTVVIKGTQLYDPKA--------------GGWR-D------LGMLDIFGRAG 217 (1492)
Q Consensus 164 f~~g~i~vlvaT~--tla~Gvnlp~---~~vVI~~~~~~~~~~--------------~~~~-~------~~~~~~~GRAG 217 (1492)
|+ |.-.||+||. .+..|||+|. ..|||-|...-.|+. .+|. . ....|-+||+=
T Consensus 491 f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~pa~~~l~Qa~GRlI 569 (620)
T 4a15_A 491 FR-RDHGTIFAVSGGRLSEGINFPGNELEMIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYPTAIKIRQEIGRLI 569 (620)
T ss_dssp HT-TSCCEEEEETTSCC--------CCCCEEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHHHHHHHHHHHHTTC
T ss_pred hc-cCCcEEEEEecCceeccccCCCCceEEEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHHHHHHHHHHhCccc
Confidence 99 8889999985 9999999985 568887654322210 0111 1 11346889999
Q ss_pred CCCCCccceEEEE
Q 043190 218 RPQFDRSGEGIII 230 (1492)
Q Consensus 218 R~~~d~~G~~i~~ 230 (1492)
|...| .|..+++
T Consensus 570 R~~~D-~G~v~ll 581 (620)
T 4a15_A 570 RSAED-TGACVIL 581 (620)
T ss_dssp CSTTC-CEEEEEE
T ss_pred cCCCc-eEEEEEE
Confidence 97655 5766665
No 176
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=96.71 E-value=0.011 Score=73.61 Aligned_cols=186 Identities=16% Similarity=0.077 Sum_probs=100.9
Q ss_pred ccEEEEcccCCChHHHHHhcCCCCCCc----eEeecCCcccccceEEEEEeeC---CchhHHHHHhhHHHHHHHHHHHh-
Q 043190 8 IRIVGLSATLPNYLEVAQFLRVNPEMG----LFFFDSSYRPIPLAQQYIGISE---PNFAARNELLSEICYKKVVDSLR- 79 (1492)
Q Consensus 8 ~riv~lSATl~n~~~~a~~l~~~~~~~----~~~~~~~~rpv~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~- 79 (1492)
..+|++|||++....+++-|+...+.. .+.+++.+ -++..+.++. ..+..+...+.+.+.+.+.+.+.
T Consensus 316 ~svIltSaTL~~~~~~~~~lGl~~~~~~~~~~~~~~spf----~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~~l~~~ 391 (551)
T 3crv_A 316 LSIILMSGTLPPREYMEKVWGIKRNMLYLDVEREIQKRV----SGSYECYIGVDVTSKYDMRSDNMWKRYADYLLKIYFQ 391 (551)
T ss_dssp CEEEEEESSCCCHHHHHHTSCCCSCEEEEEHHHHTTSCC----SCEEEEEEECSCCCCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeeCCCcHHHHHHHhCCCCccccccceeecCCcC----CCceEEEEeCCCCCccccCCHHHHHHHHHHHHHHHHh
Confidence 578999999998888888888752221 11223333 1222222221 11111101111122233333332
Q ss_pred cCCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHH
Q 043190 80 QGHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGL 159 (1492)
Q Consensus 80 ~~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~ 159 (1492)
.++.+|||++|.+..+.+++. . ...+-...-+++ +..
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~--------~--------------------------------~~~v~~q~~~~~---~~~ 428 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR--------I--------------------------------SLPKYVESEDSS---VED 428 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT--------C--------------------------------CSSEEECCSSCC---HHH
T ss_pred CCCCEEEEecCHHHHHHHHHh--------c--------------------------------CCcEEEcCCCCC---HHH
Confidence 356899999999988777641 0 111333333444 345
Q ss_pred HHHHHhCCCccEEEec--cccccccCCC------cEEEEEeccceecC-------------CCC--Cc-ccC------ch
Q 043190 160 TERLFSEGLLKVLVCT--ATLAWGVNLP------AHTVVIKGTQLYDP-------------KAG--GW-RDL------GM 209 (1492)
Q Consensus 160 ve~~f~~g~i~vlvaT--~tla~Gvnlp------~~~vVI~~~~~~~~-------------~~~--~~-~~~------~~ 209 (1492)
+.+.|+.+.-.||+|| ..+..|||+| ...|||-|...-.+ ..| +| ..+ .+
T Consensus 429 ~~~~~~~~~~~vl~~v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l 508 (551)
T 3crv_A 429 LYSAISANNKVLIGSVGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTI 508 (551)
T ss_dssp HHHHTTSSSSCEEEEESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEEecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHH
Confidence 6777853334899998 6999999999 47788876543222 101 22 111 13
Q ss_pred hhhhhccCCCCCCccceEEEEeCCccHHHHHH
Q 043190 210 LDIFGRAGRPQFDRSGEGIIITSHDKLAYYLR 241 (1492)
Q Consensus 210 ~~~~GRAGR~~~d~~G~~i~~~~~~~~~~~~~ 241 (1492)
.|-+||+=|...| .|..+++-..-....|.+
T Consensus 509 ~Qa~GRlIR~~~D-~G~v~llD~R~~~~~~~~ 539 (551)
T 3crv_A 509 KQAIGRAIRDVND-KCNVWLLDKRFESLYWKK 539 (551)
T ss_dssp HHHHHTTCCSTTC-EEEEEEESGGGGSHHHHH
T ss_pred HHHhccCccCCCc-cEEEEEeehhcccchhhh
Confidence 4678999997655 676666543333334443
No 177
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.49 E-value=0.024 Score=65.84 Aligned_cols=72 Identities=15% Similarity=0.188 Sum_probs=56.4
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhh
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVS 760 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~ 760 (1492)
.|+|+|...+..+. ..+.+++..+-+.|||.++...++..+...++..+++++|++.-|..+++.+...+..
T Consensus 163 ~L~p~Qk~il~~l~-~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHH-HSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhc-cCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 58999999998764 4467899999999999987666555433345779999999999998888777765543
No 178
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.93 E-value=0.04 Score=69.02 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
.|+|+|...+..+. ..+.+++.++-|+|||.+....++..+...++..+++++|++..|.+.++.++..+...
T Consensus 163 ~l~p~Q~~i~~~l~-~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS-SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHH-HCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhc-cccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 48999999998773 56788999999999999776555544444456799999999999999888777665443
No 179
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.68 E-value=0.024 Score=59.01 Aligned_cols=39 Identities=21% Similarity=0.075 Sum_probs=29.9
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLK 744 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r 744 (1492)
+.-.++.||.|+|||+.++..+.+.... +.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~--g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLG--KKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT--TCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeecc
Confidence 5678899999999999876665555433 67899999984
No 180
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.53 E-value=0.019 Score=73.48 Aligned_cols=108 Identities=18% Similarity=0.171 Sum_probs=74.4
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHhhhccCC
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRLVSQLGK 764 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~ 764 (1492)
..||+-|.+++.. .+..++|.|+.|||||.+...-+...+... +..+++++++|+..+.++.+++.+.++..
T Consensus 8 ~~Ln~~Q~~av~~---~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~--- 81 (647)
T 3lfu_A 8 DSLNDKQREAVAA---PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS--- 81 (647)
T ss_dssp TTCCHHHHHHHTC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC---
T ss_pred hcCCHHHHHHHhC---CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc---
Confidence 4699999999983 467899999999999998877676666542 34689999999999999888877654210
Q ss_pred EEEEEcCCCCcchhccCCCcEEEECchhh-hHhhhcccCccccCcccEEEEeccc
Q 043190 765 EMVEMTGDYTPDLMALLSADIIISTPEKW-DGISRNWHSRNYVKKVGLMILDEIH 818 (1492)
Q Consensus 765 ~v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~i~liViDEaH 818 (1492)
...+.|+|...| ..+++.......+ .-..-|+|+..
T Consensus 82 -----------------~~~~~v~Tfhs~~~~il~~~~~~~~~-~~~~~i~~~~~ 118 (647)
T 3lfu_A 82 -----------------QGGMWVGTFHGLAHRLLRAHHMDANL-PQDFQILDSED 118 (647)
T ss_dssp -----------------CTTCEEEEHHHHHHHHHHHTTGGGTC-CTTCEEECHHH
T ss_pred -----------------cCCcEEEcHHHHHHHHHHHHHHHhCC-CCCCEEeCHHH
Confidence 135788898886 3344432211111 12345677665
No 181
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.49 E-value=0.051 Score=56.37 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=25.8
Q ss_pred CHHHHHHHHhhh--------cCCCcEEEecCCCCCchHHHHH
Q 043190 690 NPIQTQIFHILY--------HTDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 690 ~~~Q~~~i~~~~--------~~~~~vli~apTGsGKT~~~~l 723 (1492)
++.|.+++..+. ..++.+++.||+|+|||+.+-.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHH
Confidence 457777776543 3578999999999999987643
No 182
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=95.05 E-value=0.023 Score=47.85 Aligned_cols=54 Identities=22% Similarity=0.303 Sum_probs=46.2
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhC--CchHHHHHHHhcC
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIG--NFPVSRLHQDLQR 1373 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~--~~~~~~i~~~~~~ 1373 (1492)
.+|.+|||+++..+.+|.++||.|+++|+.++.+++..+.+ +.....|...++.
T Consensus 7 ~~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 7 DDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARN 62 (70)
T ss_dssp HHHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred hHHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999999988744 5567777766654
No 183
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=95.03 E-value=0.017 Score=48.65 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=50.2
Q ss_pred cccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccCC
Q 043190 488 HPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYFP 544 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~P 544 (1492)
.+|.+|| ++++..+.+|.++|+ |+++++.++.+++..+.+ ++..+.+++..++.+|
T Consensus 7 ~~l~~L~-Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aAr~~~ 64 (70)
T 1wcn_A 7 DDLLNLE-GVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNIC 64 (70)
T ss_dssp HHHHSST-TCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHHHHHH
T ss_pred hHHHHcC-CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHHHHcc
Confidence 4688999 999999999999999 999999999999999988 7888888888877533
No 184
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.85 E-value=0.035 Score=70.98 Aligned_cols=90 Identities=22% Similarity=0.199 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhcc--CCCceEEEEcccHHHHHHHHHHHHHHhhhccCCE
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNT--QSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKE 765 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~--~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~ 765 (1492)
.|||-|.+++.. .+.+++|.|+.|||||.+...-+...+.. .+..++++++.|+..|.++.+++.+.++..
T Consensus 2 ~L~~~Q~~av~~---~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~---- 74 (673)
T 1uaa_A 2 RLNPGQQQAVEF---VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK---- 74 (673)
T ss_dssp CCCHHHHHHHHC---CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTT----
T ss_pred CCCHHHHHHHhC---CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcc----
Confidence 489999999986 36789999999999999877666665543 235789999999999999888876654221
Q ss_pred EEEEcCCCCcchhccCCCcEEEECchhh-hHhhhc
Q 043190 766 MVEMTGDYTPDLMALLSADIIISTPEKW-DGISRN 799 (1492)
Q Consensus 766 v~~~~g~~~~~~~~~~~~~Iiv~Tpe~l-~~l~~~ 799 (1492)
...++.|+|...| ..+++.
T Consensus 75 ---------------~~~~~~v~Tfhs~~~~il~~ 94 (673)
T 1uaa_A 75 ---------------EARGLMISTFHTLGLDIIKR 94 (673)
T ss_dssp ---------------TTTTSEEEEHHHHHHHHHHH
T ss_pred ---------------cccCCEEEeHHHHHHHHHHH
Confidence 0124678898876 334443
No 185
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.71 E-value=0.055 Score=56.40 Aligned_cols=40 Identities=15% Similarity=0.022 Sum_probs=31.2
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLK 744 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r 744 (1492)
.++-.++.||.|||||+.++..+.+... .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~--~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKI--AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHH--CCCEEEEEEecc
Confidence 4567889999999999988766666543 378999999984
No 186
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.61 E-value=0.044 Score=58.60 Aligned_cols=40 Identities=20% Similarity=0.145 Sum_probs=32.0
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLK 744 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r 744 (1492)
.+.-+++.||+|+|||+.++..+.+.... +.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--DVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEEecc
Confidence 56788999999999999887776666443 67899998875
No 187
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.33 E-value=0.068 Score=68.70 Aligned_cols=69 Identities=23% Similarity=0.258 Sum_probs=56.2
Q ss_pred CCCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC--CCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 687 SHFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ--SDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 687 ~~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~--~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
..|||-|.+++.. .+.+++|.|+.|||||.+...-+...+... +..++++++.|+..|.++.+++.+.+
T Consensus 10 ~~Ln~~Q~~av~~---~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT---TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC---CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC---CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 4599999999886 357899999999999998877676666532 34689999999999999888877655
No 188
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.27 E-value=0.068 Score=53.36 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=17.3
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.++.+++.||+|+|||..+-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57899999999999998653
No 189
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.17 E-value=0.07 Score=72.85 Aligned_cols=122 Identities=17% Similarity=0.127 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHHHHHHhccC----CCceEEEEcccHHHHHHHHHHHHHHhhhccC
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELAMLHLFNTQ----SDMKVVYIAPLKAIVRERMNDWKDRLVSQLG 763 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~il~~l~~~----~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g 763 (1492)
.+|+-|.+++.. .+++++|.|..|||||.+...-++..+... +..+++++++|++.|.++.+++...+...++
T Consensus 10 ~~t~eQ~~~i~~---~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~~~ 86 (1232)
T 3u4q_A 10 TWTDDQWNAIVS---TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEKELV 86 (1232)
T ss_dssp CCCHHHHHHHHC---CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC---CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHHHhh
Confidence 489999999886 478999999999999999887777777653 3468999999999999999998887654421
Q ss_pred CEEEEEcCCCC-cchhccCCCcEEEECchhh-hHhhhcccCccccCcccEEEEeccc
Q 043190 764 KEMVEMTGDYT-PDLMALLSADIIISTPEKW-DGISRNWHSRNYVKKVGLMILDEIH 818 (1492)
Q Consensus 764 ~~v~~~~g~~~-~~~~~~~~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~i~liViDEaH 818 (1492)
. ..+.. .......-.++-|+|-..| ..++++......+. -.+-|+||..
T Consensus 87 ~-----~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~-~~f~~~d~~~ 137 (1232)
T 3u4q_A 87 Q-----RPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLD-PGFRIADQTE 137 (1232)
T ss_dssp H-----STTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCC-TTCEECCHHH
T ss_pred c-----CcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCC-CCCeeCCHHH
Confidence 1 00000 0000011235678998886 44444422211111 1223677754
No 190
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=93.95 E-value=0.058 Score=44.46 Aligned_cols=54 Identities=17% Similarity=0.326 Sum_probs=47.0
Q ss_pred CCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCch-HHHHHHHhcC
Q 043190 1319 DSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFP-VSRLHQDLQR 1373 (1492)
Q Consensus 1319 ~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~-~~~i~~~~~~ 1373 (1492)
.+.|..+||||+.+.+.|-+ .+.|++++.+++.+++..+++... ++.|+++++.
T Consensus 3 ~s~L~~IpGIG~kr~~~LL~-~Fgs~~~i~~As~eeL~~vig~~~~A~~I~~~l~~ 57 (63)
T 2a1j_A 3 QDFLLKMPGVNAKNCRSLMH-HVKNIAELAALSQDELTSILGNAANAKQLYDFIHT 57 (63)
T ss_dssp CHHHHTSTTCCHHHHHHHHH-HCSSHHHHHTCCHHHHHHHHSCHHHHHHHHHHHHC
T ss_pred HhHHHcCCCCCHHHHHHHHH-HcCCHHHHHHCCHHHHHHHcCchHHHHHHHHHHhc
Confidence 35688999999999998875 467999999999999999999888 8999998853
No 191
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=93.93 E-value=0.071 Score=43.94 Aligned_cols=52 Identities=10% Similarity=0.249 Sum_probs=46.7
Q ss_pred cccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhcCCch-HHHHHHHhc
Q 043190 488 HPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPG-GRLVKQYLG 541 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~-~~~i~~~~~ 541 (1492)
+.|..+| +||+...+.|-++--|++++.+++.+|+.++++ ... ++.|+++++
T Consensus 4 s~L~~Ip-GIG~kr~~~LL~~Fgs~~~i~~As~eeL~~vig-~~~~A~~I~~~l~ 56 (63)
T 2a1j_A 4 DFLLKMP-GVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIH 56 (63)
T ss_dssp HHHHTST-TCCHHHHHHHHHHCSSHHHHHTCCHHHHHHHHS-CHHHHHHHHHHHH
T ss_pred hHHHcCC-CCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHcC-chHHHHHHHHHHh
Confidence 5688999 999999999988766999999999999999988 666 999999886
No 192
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=93.57 E-value=0.14 Score=53.72 Aligned_cols=41 Identities=10% Similarity=-0.043 Sum_probs=31.8
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
.+.-.+++||.|||||+.++-.+.+.... +.+++++.|.+.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~k~~~d 67 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFA--KQHAIVFKPCID 67 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEECC--
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEeccC
Confidence 45567789999999999888777776543 789999999864
No 193
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.54 E-value=0.2 Score=56.63 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=61.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccC------CCceEEEEcccH-HHHHHHHHHHHHHhhhccCCEEEEEcCCCCc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQ------SDMKVVYIAPLK-AIVRERMNDWKDRLVSQLGKEMVEMTGDYTP 775 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~------~~~~~l~i~P~r-~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~ 775 (1492)
.+.++++.||+|+|||.++-.. ++.+... +....+++--.. .--.+.+..+.+.+. |.++ +++
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v-~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~---g~~~---~~~--- 113 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDV-MDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS---KENL---CGD--- 113 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHH-HHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS---CCC-----CC---
T ss_pred CCCeEEEECCCCCCHHHHHHHH-HHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc---CCCC---Cch---
Confidence 4578999999999999876543 4444321 123455553211 111222333333231 2211 000
Q ss_pred chhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 776 DLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 776 ~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
.+-+.+..++..... .-....++++||+|.+. . ...+..++ + +......+.-+|+.++|+
T Consensus 114 ------------~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~-~-q~~L~~l~---~-~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 114 ------------ISLEALNFYITNVPK--AKKRKTLILIQNPENLL-S-EKILQYFE---K-WISSKNSKLSIICVGGHN 173 (318)
T ss_dssp ------------CCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSC-C-THHHHHHH---H-HHHCSSCCEEEEEECCSS
T ss_pred ------------HHHHHHHHHHHHhhh--ccCCceEEEEecHHHhh-c-chHHHHHH---h-cccccCCcEEEEEEecCc
Confidence 011223333332100 12345689999999886 2 11222222 2 222234467888999998
Q ss_pred CChH
Q 043190 856 ANAG 859 (1492)
Q Consensus 856 ~~~~ 859 (1492)
.+..
T Consensus 174 d~~~ 177 (318)
T 3te6_A 174 VTIR 177 (318)
T ss_dssp CCCH
T ss_pred ccch
Confidence 6644
No 194
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.45 E-value=0.083 Score=62.05 Aligned_cols=87 Identities=16% Similarity=0.122 Sum_probs=52.8
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCC
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLS 782 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~ 782 (1492)
+.+-.++.|+.|||||.... +.+. ..+.++++||++++.+..+ .+... |. . ..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~----~~~~---~~~~lVlTpT~~aa~~l~~----kl~~~-~~--------~-------~~ 212 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEIL----SRVN---FEEDLILVPGRQAAEMIRR----RANAS-GI--------I-------VA 212 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHH----HHCC---TTTCEEEESCHHHHHHHHH----HHTTT-SC--------C-------CC
T ss_pred cccEEEEEcCCCCCHHHHHH----HHhc---cCCeEEEeCCHHHHHHHHH----Hhhhc-Cc--------c-------cc
Confidence 34567899999999999643 2222 2567999999999876444 34221 11 0 11
Q ss_pred CcEEEECchhhhHhhhcccCccccCcccEEEEeccccc
Q 043190 783 ADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 783 ~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l 820 (1492)
...-|.|-+++. ++. .. ......+++||||+-++
T Consensus 213 ~~~~V~T~dsfL--~~~-~~-~~~~~~d~liiDE~sm~ 246 (446)
T 3vkw_A 213 TKDNVRTVDSFL--MNY-GK-GARCQFKRLFIDEGLML 246 (446)
T ss_dssp CTTTEEEHHHHH--HTT-TS-SCCCCCSEEEEETGGGS
T ss_pred ccceEEEeHHhh--cCC-CC-CCCCcCCEEEEeCcccC
Confidence 123467777643 221 11 11124789999999977
No 195
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.41 E-value=0.33 Score=50.84 Aligned_cols=41 Identities=17% Similarity=0.026 Sum_probs=30.6
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
.|.-.+++||-|||||+..+..+.+.... +.+++++.|.+.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~--g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYA--KQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHc--CCceEEEEeccC
Confidence 56778999999999998776665554433 688999999764
No 196
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=93.29 E-value=0.097 Score=45.76 Aligned_cols=52 Identities=10% Similarity=0.249 Sum_probs=46.7
Q ss_pred cccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhcCCch-HHHHHHHhc
Q 043190 488 HPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYTPG-GRLVKQYLG 541 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~~~-~~~i~~~~~ 541 (1492)
+.|..+| +||+...++|-++.-|++++.+++.+||.++++ .+. ++.|+++++
T Consensus 18 s~L~~Ip-GIG~kr~~~LL~~FgSl~~i~~AS~eEL~~vig-~~~~A~~I~~~l~ 70 (84)
T 1z00_B 18 DFLLKMP-GVNAKNCRSLMHHVKNIAELAALSQDELTSILG-NAANAKQLYDFIH 70 (84)
T ss_dssp HHHHTCS-SCCHHHHHHHHHHSSCHHHHHHSCHHHHHHHHS-CHHHHHHHHHHHT
T ss_pred HHHHhCC-CCCHHHHHHHHHHcCCHHHHHHCCHHHHHHHhC-chHHHHHHHHHHH
Confidence 4688999 999999999988766999999999999999998 556 999999986
No 197
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A*
Probab=93.15 E-value=0.078 Score=46.36 Aligned_cols=53 Identities=17% Similarity=0.326 Sum_probs=46.7
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCch-HHHHHHHhcC
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFP-VSRLHQDLQR 1373 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~-~~~i~~~~~~ 1373 (1492)
+.|..+||||+.+.+.|-+ .+.|+++|..++.+++..+++... ++.|+++++.
T Consensus 18 s~L~~IpGIG~kr~~~LL~-~FgSl~~i~~AS~eEL~~vig~~~~A~~I~~~l~~ 71 (84)
T 1z00_B 18 DFLLKMPGVNAKNCRSLMH-HVKNIAELAALSQDELTSILGNAANAKQLYDFIHT 71 (84)
T ss_dssp HHHHTCSSCCHHHHHHHHH-HSSCHHHHHHSCHHHHHHHHSCHHHHHHHHHHHTS
T ss_pred HHHHhCCCCCHHHHHHHHH-HcCCHHHHHHCCHHHHHHHhCchHHHHHHHHHHHh
Confidence 4688999999999998875 467999999999999999999888 8999998863
No 198
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.04 E-value=0.17 Score=53.62 Aligned_cols=41 Identities=17% Similarity=0.083 Sum_probs=33.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
.+.-.+++||-|||||+.++-.+.+.... +.+++++.|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~--g~kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT--TCCEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC--CCeEEEEeecCC
Confidence 46677899999999999888777776543 789999999864
No 199
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.02 E-value=0.46 Score=50.59 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=16.0
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
.++++.||+|+|||..+..
T Consensus 39 ~~~ll~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIA 57 (226)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4699999999999987643
No 200
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.99 E-value=0.27 Score=53.61 Aligned_cols=40 Identities=28% Similarity=0.318 Sum_probs=29.9
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
..|..+++.||+|+|||+.+...+...... +.+++|+.-.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e 60 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALE 60 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcc
Confidence 467899999999999999876655554433 5678887654
No 201
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.84 E-value=0.44 Score=51.65 Aligned_cols=21 Identities=24% Similarity=0.233 Sum_probs=17.8
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+.++++.||+|+|||..+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~ 71 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHA 71 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 467999999999999987643
No 202
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.70 E-value=0.21 Score=51.60 Aligned_cols=39 Identities=15% Similarity=0.062 Sum_probs=31.2
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
.++-.++.||.|||||+-.+..+-+.... +.+++|+.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEccc
Confidence 45678999999999998777776665543 6889999887
No 203
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.67 E-value=0.25 Score=58.29 Aligned_cols=123 Identities=16% Similarity=0.180 Sum_probs=63.6
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALL 781 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~ 781 (1492)
...++++|++|+|||+.+.-.+.. +.. .+.+++++. |.|.-+.++...|... .|+.+......
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~-l~~-~G~kVllv~~D~~R~aa~eqL~~~~~~----~gvpv~~~~~~--------- 164 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARY-FQK-RGYKVGVVCSDTWRPGAYHQLRQLLDR----YHIEVFGNPQE--------- 164 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH-HHT-TTCCEEEEECCCSSTHHHHHHHHHHGG----GTCEEECCTTC---------
T ss_pred CeEEEEECcCCCCHHHHHHHHHHH-HHH-CCCeEEEEeCCCcchhHHHHHHHHHHh----cCCcEEecCCC---------
Confidence 347889999999999876544333 333 356666665 6677666666555432 25544322111
Q ss_pred CCcEEEECchhh-hHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCCC
Q 043190 782 SADIIISTPEKW-DGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTALA 856 (1492)
Q Consensus 782 ~~~Iiv~Tpe~l-~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl~ 856 (1492)
..|..+ ...+... .-..++++|||.+=.+..+ ..+...++.+.....+..-++.++||..
T Consensus 165 ------~dp~~i~~~al~~a----~~~~~DvVIIDTaGrl~~d-----~~lm~el~~i~~~~~pd~vlLVvDA~~g 225 (443)
T 3dm5_A 165 ------KDAIKLAKEGVDYF----KSKGVDIIIVDTAGRHKED-----KALIEEMKQISNVIHPHEVILVIDGTIG 225 (443)
T ss_dssp ------CCHHHHHHHHHHHH----HHTTCSEEEEECCCCSSCC-----HHHHHHHHHHHHHHCCSEEEEEEEGGGG
T ss_pred ------CCHHHHHHHHHHHH----HhCCCCEEEEECCCcccch-----HHHHHHHHHHHHhhcCceEEEEEeCCCc
Confidence 122221 1112211 0124789999998544211 1222223322222234556677777753
No 204
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.66 E-value=0.25 Score=58.22 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=31.2
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKD 756 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~ 756 (1492)
+..++++||+|+|||+.+...+.. +.. .+.+++++. +.|.-+.++...+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~-l~~-~G~kVllv~~D~~r~~a~eqL~~~~~ 149 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYF-YKK-RGYKVGLVAADVYRPAAYDQLLQLGN 149 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHH-HHH-TTCCEEEEEECCSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH-cCCeEEEEecCccchhHHHHHHHHHH
Confidence 357888999999999876543332 233 356666554 555555555554443
No 205
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=92.63 E-value=0.33 Score=55.62 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=25.0
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
+..+++.||+|+|||..+-. +...+... +..++++..
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~~~-~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAKKR-GYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHHHT-TCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHC-CCEEEEEEH
Confidence 46899999999999987653 33333322 456666653
No 206
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=92.52 E-value=0.1 Score=57.47 Aligned_cols=75 Identities=19% Similarity=0.158 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhHHCCCceecCCccccccchhhhhhccccHHHHHHHHhccCCCCCHHHHHHHHhCCCCCCCCcCCCChhH
Q 043190 1147 SRLVQNTFEDLEDSGCVKMTEDTVEPTMLGTIASQYYLSYVTVSMFGSNIGPDTSLEVFLHILSGASEYDELPVRHNEDN 1226 (1492)
Q Consensus 1147 ~~~i~~~l~~L~~~~~i~~~~~~~~~T~lG~~~s~~~i~~~T~~~f~~~l~~~~~~~~ll~ils~a~Ef~~i~~R~~e~~ 1226 (1492)
.+.+.++++.|...|+|+.++ .+|++|+.++.+|++|..+++++.+.... +...++.|.|..++ .++.+|..+..
T Consensus 17 ~~~l~~A~~~L~~LgAld~~g---~lT~lG~~ma~lPl~P~lakmLl~a~~~~-c~~~~l~iaA~Ls~-~~~f~~p~~~~ 91 (270)
T 3i4u_A 17 METLITAMEQLYTLGALDDEG---LLTRLGRRMAEFPLEPMLCKMLIMSVHLG-CSEEMLTIVSMLSV-QNVFYRPKDKQ 91 (270)
T ss_dssp HHHHHHHHHHHHHHTSBCTTS---CBCHHHHHHTTSCSCHHHHHHHHHHHHTT-CHHHHHHHHHHHTS-SCCBCCCGGGH
T ss_pred HHHHHHHHHHHHHcCCcCCCC---CccHHHHHHHhCCCCHHHHHHHHHhhhcC-CHHHHHHHHHHHCC-CccccCCchhH
Confidence 456789999999999996443 57999999999999999999998775544 45556555544333 45666665543
No 207
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.44 E-value=0.32 Score=58.25 Aligned_cols=40 Identities=23% Similarity=0.280 Sum_probs=26.0
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
.+.+++.||+|+|||..+-...-......++..++++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 4689999999999999765333222222335667776543
No 208
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.42 E-value=0.13 Score=58.61 Aligned_cols=143 Identities=19% Similarity=0.217 Sum_probs=78.9
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE-EEcCCCCcch---
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV-EMTGDYTPDL--- 777 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~-~~~g~~~~~~--- 777 (1492)
..|.-++|.|++|+|||..+...+..... .+..++|+..--. ..|+..++..... ++... ...|..+...
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEms-~~ql~~Rlls~~~---~v~~~~l~~g~Ls~~e~~~ 117 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEMS-AEQLALRALSDLT---SINMHDLESGRLDDDQWEN 117 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSSC-HHHHHHHHHHHHH---CCCHHHHHHTCCCHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCC-HHHHHHHHHHHhh---CCCHHHHhcCCCCHHHHHH
Confidence 46788999999999999987766655544 3678888865432 3344444432221 11110 0123222211
Q ss_pred -----hccCCCcEEEE-Cc----hhhhHhhhcccCccccCcccEEEEecccccCC-----CCccHHHHHHHHHHHhhhcc
Q 043190 778 -----MALLSADIIIS-TP----EKWDGISRNWHSRNYVKKVGLMILDEIHLLGA-----ERGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 778 -----~~~~~~~Iiv~-Tp----e~l~~l~~~~~~~~~l~~i~liViDEaH~l~~-----~~g~~~~~i~~~l~~~~~~~ 842 (1492)
......++.|- +| +.+...+++.... ...+++||||-.+.+.. .+...+..+...|+.+...+
T Consensus 118 l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~--~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel 195 (338)
T 4a1f_A 118 LAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQ--HKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLAREL 195 (338)
T ss_dssp HHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHH--CTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHh--cCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHc
Confidence 01112345553 33 3333334332111 11689999999998743 24455667777777776544
Q ss_pred CCceEEEEEcCC
Q 043190 843 ERAVRFIGLSTA 854 (1492)
Q Consensus 843 ~~~~~ii~lSAT 854 (1492)
++.+|++|-.
T Consensus 196 --~vpVi~lsQl 205 (338)
T 4a1f_A 196 --EIPIIALVQL 205 (338)
T ss_dssp --TSCEEEEEEC
T ss_pred --CCeEEEEEec
Confidence 6667777654
No 209
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=92.41 E-value=0.57 Score=53.78 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=26.5
Q ss_pred CCHHHHHHHHhhh---cCCC---cEEEecCCCCCchHHHHHHH
Q 043190 689 FNPIQTQIFHILY---HTDN---NVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 689 l~~~Q~~~i~~~~---~~~~---~vli~apTGsGKT~~~~l~i 725 (1492)
+.|+|.+++..+. .+++ .+++.||.|+|||..+....
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la 45 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHH
Confidence 4688888776543 2333 48999999999998876443
No 210
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.36 E-value=0.51 Score=50.86 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=26.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
.|..+++.||+|+|||+.+...+...... +.+++|+..
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEc
Confidence 57889999999999998765444333322 556777653
No 211
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.26 E-value=0.21 Score=60.17 Aligned_cols=141 Identities=17% Similarity=0.196 Sum_probs=72.9
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcCCCCcchh---
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTGDYTPDLM--- 778 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g~~~~~~~--- 778 (1492)
.|.-++|.|++|+|||..+...+...... .+.+++|+..--. ..|+..++.... .|+.... ..|.......
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~s-~~~l~~r~~~~~---~~~~~~~l~~g~l~~~~~~~~ 276 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEMS-AQQLVMRMLCAE---GNINAQNLRTGKLTPEDWGKL 276 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSSC-HHHHHHHHHHHH---HTCCHHHHHTSCCCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCC-HHHHHHHHHHHH---cCCCHHHHhcCCCCHHHHHHH
Confidence 68899999999999998877665554432 2557888764322 233333332111 0111100 1222221110
Q ss_pred -----ccCCCcEEEEC-----chhhhHhhhcccCccccCcccEEEEecccccCCC------CccHHHHHHHHHHHhhhcc
Q 043190 779 -----ALLSADIIIST-----PEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE------RGPILEVIVSRMRYISSQT 842 (1492)
Q Consensus 779 -----~~~~~~Iiv~T-----pe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~------~g~~~~~i~~~l~~~~~~~ 842 (1492)
.....++.+.. .+.+....+.... -..+++||||+.+.+... +...+..+...++.+....
T Consensus 277 ~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~---~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~ 353 (454)
T 2r6a_A 277 TMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQ---ESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALAREL 353 (454)
T ss_dssp HHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHT---TTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 01133455543 3333333333211 135889999999987521 2234456666666665433
Q ss_pred CCceEEEEEcC
Q 043190 843 ERAVRFIGLST 853 (1492)
Q Consensus 843 ~~~~~ii~lSA 853 (1492)
+..+|++|-
T Consensus 354 --~i~vi~~sq 362 (454)
T 2r6a_A 354 --EVPVIALSQ 362 (454)
T ss_dssp --TCCEEEEEC
T ss_pred --CCeEEEEec
Confidence 556666654
No 212
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.68 E-value=0.28 Score=58.97 Aligned_cols=141 Identities=18% Similarity=0.135 Sum_probs=73.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE-EEcCCCCcch----
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV-EMTGDYTPDL---- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~-~~~g~~~~~~---- 777 (1492)
.|.-++|+|++|+|||..+...+...... .+.+++|+..--. ..|+..++..... ++... ...|....+.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~~-~~~l~~R~~~~~~---~i~~~~l~~g~l~~~~~~~~ 273 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEMP-AAQLTLRMMCSEA---RIDMNRVRLGQLTDRDFSRL 273 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSSC-HHHHHHHHHHHHT---TCCTTTCCGGGCCHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCCC-HHHHHHHHHHHHc---CCCHHHHhCCCCCHHHHHHH
Confidence 67889999999999998777666555432 2567888765422 2344444322111 21110 0122222111
Q ss_pred ----hccCCCcEEEEC-----chhhhHhhhcccCccccCcccEEEEecccccCCC--------CccHHHHHHHHHHHhhh
Q 043190 778 ----MALLSADIIIST-----PEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE--------RGPILEVIVSRMRYISS 840 (1492)
Q Consensus 778 ----~~~~~~~Iiv~T-----pe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~--------~g~~~~~i~~~l~~~~~ 840 (1492)
.......+.+-. ++.+...+++... -..+++||||..+.+... +...+..+...++.+..
T Consensus 274 ~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~---~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAk 350 (444)
T 2q6t_A 274 VDVASRLSEAPIYIDDTPDLTLMEVRARARRLVS---QNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALAR 350 (444)
T ss_dssp HHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHH---HSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHH---HcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 011133455542 2333333333211 135889999999987432 11234456666666655
Q ss_pred ccCCceEEEEEcC
Q 043190 841 QTERAVRFIGLST 853 (1492)
Q Consensus 841 ~~~~~~~ii~lSA 853 (1492)
.. ++.+|++|-
T Consensus 351 e~--~v~vi~lsq 361 (444)
T 2q6t_A 351 EL--GIPIIALSQ 361 (444)
T ss_dssp HH--TSCEEEEEE
T ss_pred Hh--CCeEEEEec
Confidence 43 566777764
No 213
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=91.58 E-value=0.17 Score=62.63 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=72.4
Q ss_pred CCCHHHHHHHHhhhcC-CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEE
Q 043190 688 HFNPIQTQIFHILYHT-DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEM 766 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~-~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v 766 (1492)
.+|.-|.+++..++.. ....++.|+-|.|||.+.-+.+-.. . ..+++.+|+.+-+....+ + . +.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-~----~~~~vtAP~~~a~~~l~~-~---~----~~-- 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-A----GRAIVTAPAKASTDVLAQ-F---A----GE-- 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-S----SCEEEECSSCCSCHHHHH-H---H----GG--
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-H----hCcEEECCCHHHHHHHHH-H---h----hC--
Confidence 5889999999887741 3467999999999997666655543 2 346999999886553222 1 1 10
Q ss_pred EEEcCCCCcchhccCCCcEEEECchhhhHhhhcccCccccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCce
Q 043190 767 VEMTGDYTPDLMALLSADIIISTPEKWDGISRNWHSRNYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAV 846 (1492)
Q Consensus 767 ~~~~g~~~~~~~~~~~~~Iiv~Tpe~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~ 846 (1492)
.|-+..|+.+ ... ..+.+++|||||=.+. -+.+..++. ..
T Consensus 240 -----------------~i~~~~Pd~~---~~~------~~~~dlliVDEAAaIp---~pll~~ll~-----------~~ 279 (671)
T 2zpa_A 240 -----------------KFRFIAPDAL---LAS------DEQADWLVVDEAAAIP---APLLHQLVS-----------RF 279 (671)
T ss_dssp -----------------GCCBCCHHHH---HHS------CCCCSEEEEETGGGSC---HHHHHHHHT-----------TS
T ss_pred -----------------CeEEeCchhh---hhC------cccCCEEEEEchhcCC---HHHHHHHHh-----------hC
Confidence 1333456532 221 3357899999998773 222333322 22
Q ss_pred EEEEEcCCCCCh
Q 043190 847 RFIGLSTALANA 858 (1492)
Q Consensus 847 ~ii~lSATl~~~ 858 (1492)
..|+||.|+..+
T Consensus 280 ~~v~~~tTv~GY 291 (671)
T 2zpa_A 280 PRTLLTTTVQGY 291 (671)
T ss_dssp SEEEEEEEBSST
T ss_pred CeEEEEecCCcC
Confidence 347778887654
No 214
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.49 E-value=0.42 Score=54.22 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
+.++++.||+|+|||..+-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4579999999999998764
No 215
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.47 E-value=1.1 Score=46.04 Aligned_cols=21 Identities=38% Similarity=0.351 Sum_probs=17.5
Q ss_pred CCcEEEecCCCCCchHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~ 724 (1492)
..++++.||+|+|||..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~ 63 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGL 63 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHH
Confidence 568999999999999876543
No 216
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.44 E-value=0.27 Score=57.90 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=16.9
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
.+.+++.||+|+|||..+..
T Consensus 45 ~~~vll~G~~G~GKT~la~~ 64 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKY 64 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHH
Confidence 45799999999999987643
No 217
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.27 E-value=0.44 Score=58.48 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=23.0
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
.+.++++||+|+|||..+-. +.+.+ +..++.+..
T Consensus 77 ~~~lLL~GppGtGKTtla~~-la~~l----~~~~i~in~ 110 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHL-VAQEL----GYDILEQNA 110 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHH-HHHHT----TCEEEEECT
T ss_pred CcEEEEECCCCCCHHHHHHH-HHHHc----CCCEEEEeC
Confidence 36899999999999997653 33332 445555543
No 218
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=91.27 E-value=0.27 Score=58.00 Aligned_cols=21 Identities=38% Similarity=0.570 Sum_probs=17.6
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
...++++.||+|+|||.++-.
T Consensus 147 ~~~~vLL~GppGtGKT~la~a 167 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKA 167 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 357999999999999987643
No 219
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.92 E-value=1 Score=51.11 Aligned_cols=142 Identities=16% Similarity=0.122 Sum_probs=74.3
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcCC--CCcc--
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTGD--YTPD-- 776 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g~--~~~~-- 776 (1492)
..|.-++|+|++|+|||..+...+...... +.+++|+.--- -..|+..++..... ++.... ..|. ....
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~--g~~vl~~slE~-s~~~l~~R~~~~~~---~i~~~~l~~~~~~l~~~~~ 139 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM-GKKENIKRLIVTAG---SINAQKIKAARRDFASEDW 139 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTT--TCEEEEEESSS-CHHHHHHHHHHHHT---TCCHHHHHSCHHHHCSSCH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEECCC-CHHHHHHHHHHHHc---CCCHHHHhcCCCCCCHHHH
Confidence 467899999999999998877666665543 47888887542 23334444332211 111100 0111 1100
Q ss_pred ------hhccCCCcEEEEC-----chhhhHhhhcccCccccCccc--EEEEecccccCCC-----CccHHHHHHHHHHHh
Q 043190 777 ------LMALLSADIIIST-----PEKWDGISRNWHSRNYVKKVG--LMILDEIHLLGAE-----RGPILEVIVSRMRYI 838 (1492)
Q Consensus 777 ------~~~~~~~~Iiv~T-----pe~l~~l~~~~~~~~~l~~i~--liViDEaH~l~~~-----~g~~~~~i~~~l~~~ 838 (1492)
........+.+.. ++.+...+++... -..++ +||||-++.+... +...+..+...++.+
T Consensus 140 ~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~---~~~~~~~lVVID~l~~l~~~~~~~~r~~~i~~~~~~Lk~l 216 (315)
T 3bh0_A 140 GKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKR---KNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKM 216 (315)
T ss_dssp HHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHH---TSSSCCEEEEEECGGGSBCSCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHH---hcCCCCeEEEEeCchhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 0011133555542 2333333333211 12578 9999999977421 113445666667666
Q ss_pred hhccCCceEEEEEcCC
Q 043190 839 SSQTERAVRFIGLSTA 854 (1492)
Q Consensus 839 ~~~~~~~~~ii~lSAT 854 (1492)
.... ++.++++|-.
T Consensus 217 Ak~~--~i~vi~lsql 230 (315)
T 3bh0_A 217 AREL--DVVVIALSQL 230 (315)
T ss_dssp HHHH--TCEEEEEECC
T ss_pred HHHh--CCeEEEEeec
Confidence 5543 5667777653
No 220
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.89 E-value=1.1 Score=48.37 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=15.9
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
..+++.||+|+|||..+..
T Consensus 46 ~~~ll~G~~G~GKT~l~~~ 64 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARL 64 (250)
T ss_dssp SEEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3789999999999987643
No 221
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=90.87 E-value=0.55 Score=55.14 Aligned_cols=21 Identities=48% Similarity=0.545 Sum_probs=17.7
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+.++++.||+|+|||..+-.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHH
Confidence 457899999999999987653
No 222
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=90.27 E-value=0.19 Score=55.30 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhccccccccCCceEeCCCcchhhhcccchhhHHHHHHHhhcCCCHHHHHHHhcCCccCCCCccchhH
Q 043190 314 RALVTDAARALDKAKMMRFDEKSGNFYCTELGRIASHFYIQYSSVETYNEMLRRHMNDSEVIEMVSHSSEFENIVVRDEE 393 (1492)
Q Consensus 314 ~~~~~~~l~~L~~~~~i~~~~~~~~~~~t~~G~~~s~~~i~~~T~~~~~~~l~~~~~~~~ll~ils~s~Ef~~i~~R~~e 393 (1492)
.+.+..|++.|...|+|+.+ + .+|++|+.||.++++|..++++......+ +...++.+.|...+ .++.+|+.+
T Consensus 17 ~~~l~~A~~~L~~LgAld~~---g--~lT~lG~~ma~lPl~P~lakmLl~a~~~~-c~~~~l~iaA~Ls~-~~~f~~p~~ 89 (270)
T 3i4u_A 17 METLITAMEQLYTLGALDDE---G--LLTRLGRRMAEFPLEPMLCKMLIMSVHLG-CSEEMLTIVSMLSV-QNVFYRPKD 89 (270)
T ss_dssp HHHHHHHHHHHHHHTSBCTT---S--CBCHHHHHHTTSCSCHHHHHHHHHHHHTT-CHHHHHHHHHHHTS-SCCBCCCGG
T ss_pred HHHHHHHHHHHHHcCCcCCC---C--CccHHHHHHHhCCCCHHHHHHHHHhhhcC-CHHHHHHHHHHHCC-CccccCCch
Confidence 57888999999999999632 3 69999999999999999999999876544 45566666554432 456666555
Q ss_pred HHH
Q 043190 394 QNE 396 (1492)
Q Consensus 394 ~~~ 396 (1492)
+++
T Consensus 90 ~~~ 92 (270)
T 3i4u_A 90 KQA 92 (270)
T ss_dssp GHH
T ss_pred hHH
Confidence 443
No 223
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=90.23 E-value=0.37 Score=55.12 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+++.||+|+|||..+-
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999999764
No 224
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.05 E-value=0.84 Score=52.11 Aligned_cols=18 Identities=39% Similarity=0.639 Sum_probs=15.7
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
++++.||+|+|||..+..
T Consensus 48 ~~ll~G~~G~GKT~la~~ 65 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALA 65 (327)
T ss_dssp EEEEESCTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 799999999999987643
No 225
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.71 E-value=0.32 Score=58.06 Aligned_cols=142 Identities=16% Similarity=0.131 Sum_probs=75.8
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEE-EcCC--CCcch-
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVE-MTGD--YTPDL- 777 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~-~~g~--~~~~~- 777 (1492)
..|.-++|.|++|+|||..++..+...... +.+++|++---. ..|+..++..... |+.... ..|. .....
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms-~~ql~~R~~~~~~---~i~~~~l~~g~~~l~~~~~ 268 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMG-KKENIKRLIVTAG---SINAQKIKAARRDFASEDW 268 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSC-TTHHHHHHHHHHS---CCCHHHHHHTGGGTCCSCH
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCC-HHHHHHHHHHHHc---CCCHHHHhcccCCCCHHHH
Confidence 367899999999999999887777666554 678888865422 2233333322111 111000 1121 11110
Q ss_pred -------hccCCCcEEEE-----CchhhhHhhhcccCccccCccc--EEEEecccccCCC-----CccHHHHHHHHHHHh
Q 043190 778 -------MALLSADIIIS-----TPEKWDGISRNWHSRNYVKKVG--LMILDEIHLLGAE-----RGPILEVIVSRMRYI 838 (1492)
Q Consensus 778 -------~~~~~~~Iiv~-----Tpe~l~~l~~~~~~~~~l~~i~--liViDEaH~l~~~-----~g~~~~~i~~~l~~~ 838 (1492)
..+....+.|- |++.+...+++.... ..++ +||||=.+.+... +...+..+...++.+
T Consensus 269 ~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~---~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~l 345 (444)
T 3bgw_A 269 GKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRK---NPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKM 345 (444)
T ss_dssp HHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHH---SCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 01113455553 233333333332111 2578 9999999977422 222344566666666
Q ss_pred hhccCCceEEEEEcCC
Q 043190 839 SSQTERAVRFIGLSTA 854 (1492)
Q Consensus 839 ~~~~~~~~~ii~lSAT 854 (1492)
.... ++.++++|-.
T Consensus 346 Ake~--~v~vi~lsql 359 (444)
T 3bgw_A 346 AREL--DVVVIALSQL 359 (444)
T ss_dssp HHHH--TCEEEEEEEC
T ss_pred HHHh--CCeEEEEecC
Confidence 5543 6677777754
No 226
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=89.68 E-value=0.48 Score=53.05 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=17.3
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
....+++.||+|+|||..+-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 56789999999999998764
No 227
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=89.66 E-value=0.29 Score=56.87 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=17.7
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
..+.+++.||+|+|||..+-.
T Consensus 116 ~~~~vLl~GppGtGKT~la~a 136 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKC 136 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 457899999999999997653
No 228
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=89.61 E-value=0.8 Score=48.76 Aligned_cols=35 Identities=31% Similarity=0.231 Sum_probs=26.6
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
.|.-+++.||+|+|||+.+...+. . .+.+++|+.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~--~~~~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---L--SGKKVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---H--HCSEEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---H--cCCcEEEEEC
Confidence 578899999999999987665544 2 2677888764
No 229
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=89.52 E-value=0.69 Score=54.39 Aligned_cols=35 Identities=26% Similarity=0.521 Sum_probs=23.6
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA 741 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~ 741 (1492)
++++.||+|+|||..+- .+...+....+..++++.
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHH-HHHHHHhhhcCeeEEEEe
Confidence 79999999999999764 344444332134566664
No 230
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=89.49 E-value=1 Score=49.83 Aligned_cols=20 Identities=45% Similarity=0.401 Sum_probs=16.9
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
..++++.||+|+|||..+-.
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 45899999999999997653
No 231
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.02 E-value=0.79 Score=53.16 Aligned_cols=20 Identities=40% Similarity=0.647 Sum_probs=16.9
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
..+.+|+.||+|+|||+.+-
T Consensus 181 ~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHH
Confidence 35789999999999998753
No 232
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.68 E-value=1.2 Score=52.06 Aligned_cols=37 Identities=32% Similarity=0.513 Sum_probs=23.9
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCC--CceEEEEc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQS--DMKVVYIA 741 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~--~~~~l~i~ 741 (1492)
+..+++.||+|+|||..+-. +...+.... +..++++.
T Consensus 45 ~~~vli~G~~G~GKTtl~~~-l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKF-VLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHH-HHHHHHHHTCSSCEEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHHhcCCceEEEEE
Confidence 56899999999999987654 333332211 34555554
No 233
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=88.64 E-value=0.5 Score=54.68 Aligned_cols=41 Identities=17% Similarity=0.122 Sum_probs=30.7
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
.+..++|.||+|+|||..++..+...... +.+++|+..-..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~--g~~vlyi~~E~s 113 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKA--GGTCAFIDAEHA 113 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHC--CCeEEEEECCCC
Confidence 56789999999999999877666555433 568888876543
No 234
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=88.38 E-value=1.4 Score=48.38 Aligned_cols=20 Identities=40% Similarity=0.596 Sum_probs=17.0
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
..+.+++.||+|+|||..+-
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45689999999999998764
No 235
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.29 E-value=0.64 Score=50.46 Aligned_cols=42 Identities=17% Similarity=0.053 Sum_probs=28.8
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccC----CCceEEEEccc
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQ----SDMKVVYIAPL 743 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~----~~~~~l~i~P~ 743 (1492)
..+..+++.||+|+|||+.+...+...+... .+..++|+.-.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~ 67 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTE 67 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECC
Confidence 3678999999999999998766555433211 14677777543
No 236
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=88.02 E-value=0.48 Score=54.04 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+++.||+|+|||..+-
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 3689999999999998764
No 237
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.01 E-value=0.74 Score=52.47 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=15.5
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
++++.||+|+|||..+..
T Consensus 44 ~~ll~G~~G~GKt~la~~ 61 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHC 61 (323)
T ss_dssp CEEEECSTTSSHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHH
Confidence 599999999999987653
No 238
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=87.94 E-value=0.48 Score=54.64 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=30.8
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLK 744 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r 744 (1492)
.++.+++.||+|+|||..++..+...... +.+++|+....
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--g~~vlyid~E~ 101 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEH 101 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence 57889999999999999887766655443 56888887643
No 239
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=87.72 E-value=2.1 Score=48.69 Aligned_cols=18 Identities=33% Similarity=0.460 Sum_probs=14.3
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
.+++.||+|+|||..+..
T Consensus 50 ~~L~~G~~G~GKT~la~~ 67 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKA 67 (324)
T ss_dssp EEEECSSTTSSHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHH
Confidence 467788899999987643
No 240
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.38 E-value=0.44 Score=52.03 Aligned_cols=40 Identities=25% Similarity=0.209 Sum_probs=29.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
.|..++++|++|+|||..+...+.+.... .+..++|+.-.
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E 68 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLE 68 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeeccc
Confidence 57899999999999998877666554433 25667777643
No 241
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=87.27 E-value=0.86 Score=55.06 Aligned_cols=20 Identities=40% Similarity=0.660 Sum_probs=17.3
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
....+++.||+|+|||+++-
T Consensus 237 ~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHH
Confidence 45689999999999999764
No 242
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=87.26 E-value=0.83 Score=52.57 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=30.2
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
.++.+++.||+|+|||+.+...+...... +.+++|+.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECC
Confidence 57889999999999999877766655443 6788888654
No 243
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=87.24 E-value=0.47 Score=54.08 Aligned_cols=18 Identities=39% Similarity=0.689 Sum_probs=15.6
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
++++.||+|+|||..+..
T Consensus 40 ~~ll~G~~G~GKt~la~~ 57 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIA 57 (319)
T ss_dssp CEEEESSSSSSHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHH
Confidence 699999999999987643
No 244
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=87.16 E-value=0.87 Score=52.74 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=16.6
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+++.||+|+|||+.+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4679999999999999765
No 245
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.72 E-value=0.79 Score=54.06 Aligned_cols=20 Identities=45% Similarity=0.682 Sum_probs=17.0
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
..+-+|+.||+|+|||+.+-
T Consensus 214 ~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 34789999999999999754
No 246
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.63 E-value=1.4 Score=50.55 Aligned_cols=28 Identities=21% Similarity=0.352 Sum_probs=19.6
Q ss_pred HHHhhhcCCC--cEEEecCCCCCchHHHHH
Q 043190 696 IFHILYHTDN--NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 696 ~i~~~~~~~~--~vli~apTGsGKT~~~~l 723 (1492)
.+...+..++ ++++.||+|+|||..+..
T Consensus 36 ~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 36 TVRKFVDEGKLPHLLFYGPPGTGKTSTIVA 65 (340)
T ss_dssp HHHHHHHTTCCCCEEEECSSSSSHHHHHHH
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHH
Confidence 3333444554 399999999999987653
No 247
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=86.52 E-value=2.4 Score=47.42 Aligned_cols=51 Identities=18% Similarity=0.279 Sum_probs=29.4
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDW 754 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~ 754 (1492)
.++.+.+.||+|+|||+.+....... ....+.+++++. |.+..+.++...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G~~V~lv~~D~~r~~a~eqL~~~ 156 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKHKKIAFITTDTYRIAAVEQLKTY 156 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH-HHTTCCCEEEEECCCSSTTHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCEEEEEecCcccchHHHHHHHH
Confidence 46788999999999998665433222 211255665553 3444444444433
No 248
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=86.33 E-value=0.33 Score=40.68 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=42.1
Q ss_pred ccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhc
Q 043190 1322 LWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQ 1372 (1492)
Q Consensus 1322 L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~ 1372 (1492)
+.+..|+++..+++|...|+.|+++++..+.+++..+ +++....++.+.++
T Consensus 8 f~~~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~ 60 (70)
T 1u9l_A 8 FTKYLDIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAK 60 (70)
T ss_dssp HHHHHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHH
Confidence 5666799999999999999999999999999999886 45555666665554
No 249
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.26 E-value=2.1 Score=48.02 Aligned_cols=52 Identities=23% Similarity=0.316 Sum_probs=29.9
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKD 756 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~ 756 (1492)
.++.+.+.||+|+|||+.+...... +.. .+++++++. +.|.-+.++...|.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~-l~~-~g~kV~lv~~D~~r~~a~eqL~~~~~ 156 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKM-FVD-EGKSVVLAAADTFRAAAIEQLKIWGE 156 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH-HHH-TTCCEEEEEECTTCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHH-HHh-cCCEEEEEccccccHHHHHHHHHHHH
Confidence 3557889999999999765433322 222 255665543 344444444455544
No 250
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=86.15 E-value=0.25 Score=46.00 Aligned_cols=55 Identities=16% Similarity=0.301 Sum_probs=47.6
Q ss_pred CcccccC--CCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcCC
Q 043190 1320 SALWMFP--CMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQRF 1374 (1492)
Q Consensus 1320 ~~L~qlp--~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~~ 1374 (1492)
.++-.|+ |+++..+++|.++|+.|+.+++..+++++..+ +++....+|.+.++++
T Consensus 23 ~~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 23 QPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp CCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 4566677 99999999999999999999999999999876 5677788888888765
No 251
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=85.95 E-value=3.1 Score=46.72 Aligned_cols=42 Identities=2% Similarity=0.036 Sum_probs=25.3
Q ss_pred cccCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEc
Q 043190 804 NYVKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLS 852 (1492)
Q Consensus 804 ~~l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lS 852 (1492)
......+++||||+|.+... ..+.++.-+. ..+....+|+.+
T Consensus 78 p~~~~~kvviIdead~lt~~---a~naLLk~LE----ep~~~t~fIl~t 119 (305)
T 2gno_A 78 PELYTRKYVIVHDCERMTQQ---AANAFLKALE----EPPEYAVIVLNT 119 (305)
T ss_dssp CSSSSSEEEEETTGGGBCHH---HHHHTHHHHH----SCCTTEEEEEEE
T ss_pred cccCCceEEEeccHHHhCHH---HHHHHHHHHh----CCCCCeEEEEEE
Confidence 33557899999999988422 2333443332 334566666665
No 252
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=85.71 E-value=3.6 Score=45.61 Aligned_cols=42 Identities=19% Similarity=0.227 Sum_probs=28.8
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccC---------CCceEEEEcccH
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQ---------SDMKVVYIAPLK 744 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~---------~~~~~l~i~P~r 744 (1492)
..|..++|.||+|||||+.+...+... ... ...+++|+...-
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~-~~g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI-AGGPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH-HTCCCTTCCCCCCCCCEEEEESSS
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH-hcCCCcCCCccCCCccEEEEECCC
Confidence 478899999999999999776555432 221 135677776443
No 253
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.59 E-value=0.93 Score=52.01 Aligned_cols=42 Identities=21% Similarity=0.102 Sum_probs=30.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAI 746 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~L 746 (1492)
.+..++|.||+|+|||+.+...+..... .+++++|+.....+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHAL 101 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEeccccc
Confidence 4678999999999999877655544333 26788888765543
No 254
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.42 E-value=1 Score=53.05 Aligned_cols=19 Identities=42% Similarity=0.662 Sum_probs=16.4
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+-+++.||+|+|||+.+-
T Consensus 206 prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCEEEEESCTTTTHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999999764
No 255
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=85.25 E-value=3.2 Score=48.27 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=17.8
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhc
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFN 730 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~ 730 (1492)
.+++.||+|+|||..+.. +.+.+.
T Consensus 40 ~~ll~G~~G~GKT~la~~-la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARL-LAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHH-HHHHHS
T ss_pred EEEEECCCCCCHHHHHHH-HHHHhC
Confidence 589999999999987743 344443
No 256
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.14 E-value=4.9 Score=46.24 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=24.7
Q ss_pred cCcccEEEEecccccCCCCccHHHHHHHHHHHhhhccCCceEEEEEcCCC
Q 043190 806 VKKVGLMILDEIHLLGAERGPILEVIVSRMRYISSQTERAVRFIGLSTAL 855 (1492)
Q Consensus 806 l~~i~liViDEaH~l~~~~g~~~~~i~~~l~~~~~~~~~~~~ii~lSATl 855 (1492)
..+.+++|+||+|.+... ..+.++..+.. ......+|+.|-.+
T Consensus 132 ~~~~~vlilDE~~~L~~~---~~~~L~~~le~----~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANSLTKD---AQAALRRTMEK----YSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTSSCHH---HHHHHHHHHHH----STTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccccCHH---HHHHHHHHHHh----hcCCCEEEEEeCCH
Confidence 346789999999986422 23334443432 23456777766554
No 257
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.07 E-value=1.9 Score=51.41 Aligned_cols=18 Identities=44% Similarity=0.711 Sum_probs=15.9
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
.++++.||+|+|||+.+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 479999999999999764
No 258
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.53 E-value=0.69 Score=64.33 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=37.9
Q ss_pred HHhhhc-----CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHH
Q 043190 697 FHILYH-----TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 697 i~~~~~-----~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~ 748 (1492)
++.++. .+++++++||+|+|||..+...+.+.... +.+++|+...-++..
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~ 1469 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDP 1469 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCH
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCH
Confidence 555553 57899999999999999987777766543 788999987654433
No 259
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=84.29 E-value=1.1 Score=51.46 Aligned_cols=19 Identities=37% Similarity=0.733 Sum_probs=16.5
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
.++++.||+|+|||..+-.
T Consensus 56 ~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCEEEECSTTSSHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHH
Confidence 5899999999999997643
No 260
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.20 E-value=1.7 Score=50.61 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+-+|+.||+|+|||+.+-
T Consensus 216 prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CSEEEEESSTTTTHHHHHH
T ss_pred CCCCceECCCCchHHHHHH
Confidence 4789999999999999753
No 261
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=83.70 E-value=0.68 Score=45.69 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=18.9
Q ss_pred hcCCCcEEEecCCCCCchHHHH
Q 043190 701 YHTDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 701 ~~~~~~vli~apTGsGKT~~~~ 722 (1492)
...+.++++.||+|+|||.++-
T Consensus 21 a~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHHH
Confidence 3477899999999999999764
No 262
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=82.81 E-value=1.7 Score=51.98 Aligned_cols=19 Identities=42% Similarity=0.709 Sum_probs=16.3
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+++.||+|+|||+.+-
T Consensus 49 p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999999764
No 263
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=82.64 E-value=1.8 Score=37.53 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=42.1
Q ss_pred cccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHH----HHhccCCcee
Q 043190 492 QFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVK----QYLGYFPSIQ 547 (1492)
Q Consensus 492 Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~----~~~~~~P~~~ 547 (1492)
--| ++++..++.|.+++| |..|+...++.|+.++++ +.+....+. +....+|.--
T Consensus 8 ~~p-~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~~~~~~ 68 (83)
T 2kz3_A 8 LCP-GLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPVNG 68 (83)
T ss_dssp SST-TCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCSSCCCC
T ss_pred cCC-CCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCcCcH
Confidence 347 899999999999999 999999999999999988 544444444 3444445433
No 264
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=82.60 E-value=0.9 Score=39.24 Aligned_cols=53 Identities=17% Similarity=0.131 Sum_probs=43.6
Q ss_pred CCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhc
Q 043190 1319 DSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQ 1372 (1492)
Q Consensus 1319 ~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~ 1372 (1492)
.+.|..+||+|+..++.|.+. +.++.++...+.+++..+ +++.....|..+++
T Consensus 23 ~~~L~~I~gIG~~~A~~Ll~~-fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 23 TSSLETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp CCGGGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred HHHHhcCCCCCHHHHHHHHHH-cCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 367889999999999988764 558999999999999887 77777788877654
No 265
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=82.54 E-value=5.4 Score=44.51 Aligned_cols=93 Identities=9% Similarity=-0.007 Sum_probs=49.7
Q ss_pred CCCccEEEeccccccccC-----C-CcEEEEEeccceecCCCCCcccCc-hhhhhhccCCCC--CCccceEEEEeCCccH
Q 043190 166 EGLLKVLVCTATLAWGVN-----L-PAHTVVIKGTQLYDPKAGGWRDLG-MLDIFGRAGRPQ--FDRSGEGIIITSHDKL 236 (1492)
Q Consensus 166 ~g~i~vlvaT~tla~Gvn-----l-p~~~vVI~~~~~~~~~~~~~~~~~-~~~~~GRAGR~~--~d~~G~~i~~~~~~~~ 236 (1492)
+....+-+.|+...-|+| + ++.+||+ ||+. |.... .+|.+-||-|.| ..+.-.+|.++.....
T Consensus 168 ~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~-----~Dsd---wNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~Ti 239 (328)
T 3hgt_A 168 DFSCTVHLFSSEGINFTKYPIKSKARFDMLIC-----LDTT---VDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSI 239 (328)
T ss_dssp CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEE-----CSTT---CCTTSHHHHHHHCCC---------CCEEEEEETTSH
T ss_pred cCCceEEEEECCCCCCcCcccccCCCCCEEEE-----ECCC---CCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCH
Confidence 455566566766666787 4 4555665 7754 33332 366444555542 2345678888887777
Q ss_pred HHHHHHhcCCCccccchhHhHHHHHHHHHHhC
Q 043190 237 AYYLRLLTSQLPIESQFISSLKDNLNAEVALG 268 (1492)
Q Consensus 237 ~~~~~~~~~~~~ies~l~~~l~~~l~~ei~~~ 268 (1492)
++..-.+.. +.++.....+...+++.+++.
T Consensus 240 Eh~~l~~~~--~~~~~~~~~l~k~i~a~v~lr 269 (328)
T 3hgt_A 240 DHCRLFFGK--KFDKNSREYLENVTAAMVILR 269 (328)
T ss_dssp HHHHHHHHH--HTCTTCHHHHHHHHHHHHHGG
T ss_pred HHHHHHccC--CCCcchHHHHHHHHHHHHHHH
Confidence 665432322 233344556777777766653
No 266
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=82.50 E-value=1.9 Score=37.46 Aligned_cols=53 Identities=23% Similarity=0.354 Sum_probs=41.9
Q ss_pred ccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCC--ch----HHHHHHHhcCCCc
Q 043190 1324 MFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGN--FP----VSRLHQDLQRFPR 1376 (1492)
Q Consensus 1324 qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~--~~----~~~i~~~~~~~P~ 1376 (1492)
-.|++++..++.|.++||+|..|+...++.++.++.+- .. .+.+...+...|.
T Consensus 8 ~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l~r~l~~~~s~~~~ 66 (83)
T 2kz3_A 8 LCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVALRRVLLAQFSAFPV 66 (83)
T ss_dssp SSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHCSSCC
T ss_pred cCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHHhCCCcC
Confidence 34899999999999999999999999999999887542 22 2455566666664
No 267
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=82.40 E-value=1.7 Score=36.66 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=44.5
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcCC
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQRF 1374 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~~ 1374 (1492)
.|+-+| +++......|+++||.|+.||...+.+++..+ ++.+..++|.+.+..+
T Consensus 9 ~~Ie~L-~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~~ 64 (73)
T 1z3e_B 9 MTIEEL-DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEEL 64 (73)
T ss_dssp CBGGGS-CCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred CcHHHh-CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 456666 68888889999999999999999999998876 6777778887777654
No 268
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=82.36 E-value=0.95 Score=49.33 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=19.7
Q ss_pred cCCCcEEEecCCCCCchHHHHHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~i 725 (1492)
..|..+.+.||+|||||+.+-..+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 478899999999999998765444
No 269
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=82.31 E-value=2.7 Score=49.67 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=17.5
Q ss_pred CCCcEEE--ecCCCCCchHHHHHH
Q 043190 703 TDNNVLL--GAPTGSGKTISAELA 724 (1492)
Q Consensus 703 ~~~~vli--~apTGsGKT~~~~l~ 724 (1492)
.+..++| .||.|+|||..+...
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~ 72 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFT 72 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHH
Confidence 3467888 999999999876543
No 270
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.20 E-value=2.2 Score=50.21 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=17.1
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
..+.+|+.||+|+|||+.+-
T Consensus 242 pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHH
Confidence 45789999999999998753
No 271
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.17 E-value=0.69 Score=45.52 Aligned_cols=20 Identities=25% Similarity=0.233 Sum_probs=17.5
Q ss_pred cCCCcEEEecCCCCCchHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISA 721 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~ 721 (1492)
..+.++++.||+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 46789999999999999864
No 272
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=81.11 E-value=11 Score=42.92 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=23.5
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHHH
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l~ 724 (1492)
+.-+.+.+.. +.. ..++|.||.|+|||......
T Consensus 18 R~~el~~L~~-l~~-~~v~i~G~~G~GKT~L~~~~ 50 (357)
T 2fna_A 18 REKEIEKLKG-LRA-PITLVLGLRRTGKSSIIKIG 50 (357)
T ss_dssp CHHHHHHHHH-TCS-SEEEEEESTTSSHHHHHHHH
T ss_pred hHHHHHHHHH-hcC-CcEEEECCCCCCHHHHHHHH
Confidence 3444555555 544 78999999999999876543
No 273
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=80.50 E-value=4 Score=45.55 Aligned_cols=137 Identities=13% Similarity=0.034 Sum_probs=71.5
Q ss_pred CCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHHH
Q 043190 915 SPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLVE 994 (1492)
Q Consensus 915 ~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~ 994 (1492)
..+.++|||+...+...-+-..+. ..++...-+-|.... .+.+
T Consensus 123 ~~~~kVLIfsq~t~~LDilE~~l~----------------------------------~~~~~y~RlDG~~~~-~~~k-- 165 (328)
T 3hgt_A 123 EYETETAIVCRPGRTMDLLEALLL----------------------------------GNKVHIKRYDGHSIK-SAAA-- 165 (328)
T ss_dssp TSCEEEEEEECSTHHHHHHHHHHT----------------------------------TSSCEEEESSSCCC--------
T ss_pred hCCCEEEEEECChhHHHHHHHHHh----------------------------------cCCCceEeCCCCchh-hhhh--
Confidence 356799999998776554433331 113445555565332 2211
Q ss_pred HHHhcCCceEEEeccccccccC-----CCCcEEEEecceeeeCccCccccCCHHHHHHhhcccCCCC--CCCceEEEEEe
Q 043190 995 ELFANNKIQVLVCTSTLAWGVN-----LPAHLVIIKGTEYYDGKTKRYVDFPITDILQMMGRAGRPQ--YDQHGKAVILV 1067 (1492)
Q Consensus 995 ~~f~~g~~~vLvaT~~l~~Gvd-----ip~~~~VI~~~~~~~~~~~~~~~~~~~~~~Qr~GRagR~g--~~~~G~~i~l~ 1067 (1492)
-.++...+.+.|+...-|+| +...+.||. ||+.-. |..+.+|.+-|+.|.| ..+.-.+|.++
T Consensus 166 --~~~~~~~i~Lltsag~~gin~~~~nl~~aD~VI~----~DsdwN-----p~~d~iQa~~r~~R~~~gq~k~v~V~RLv 234 (328)
T 3hgt_A 166 --ANDFSCTVHLFSSEGINFTKYPIKSKARFDMLIC----LDTTVD-----TSQKDIQYLLQYKRERKGLERYAPIVRLV 234 (328)
T ss_dssp ----CCSEEEEEEESSCCCTTTSCCCCCSCCSEEEE----CSTTCC-----TTSHHHHHHHCCC---------CCEEEEE
T ss_pred --cccCCceEEEEECCCCCCcCcccccCCCCCEEEE----ECCCCC-----CCChHHHHHHHHhhhccCCCCcceEEEEe
Confidence 12455566666776666786 455666665 554322 3445677777777763 34677889999
Q ss_pred cCCcHHHHHHhhcCCCceeecccccchhhhHHHh
Q 043190 1068 HEPKKSFYKKFLYEPFPVESSLRDQLHDHFNAEI 1101 (1492)
Q Consensus 1068 ~~~~~~~~~~~l~~~~pies~l~~~l~~~l~~ei 1101 (1492)
.....+...-.+.+. .++.....|...+++.+
T Consensus 235 t~~TiEh~~l~~~~~--~~~~~~~~l~k~i~a~v 266 (328)
T 3hgt_A 235 AINSIDHCRLFFGKK--FDKNSREYLENVTAAMV 266 (328)
T ss_dssp ETTSHHHHHHHHHHH--TCTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHccCC--CCcchHHHHHHHHHHHH
Confidence 888777655555332 11222334555555433
No 274
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=80.39 E-value=2.6 Score=44.03 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=23.2
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI 740 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i 740 (1492)
.++++.||+|+|||..+. ++...+.. .+..++++
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~~-~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELAK-RNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHHT-TTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHH-cCCeEEEE
Confidence 789999999999999764 34444433 24455554
No 275
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=80.26 E-value=2.3 Score=37.03 Aligned_cols=54 Identities=13% Similarity=0.113 Sum_probs=45.2
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcCCC
Q 043190 1321 ALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQRFP 1375 (1492)
Q Consensus 1321 ~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~~P 1375 (1492)
|+-+| +++.....+|+++||.|+.||...+.+++..+ ++.+-+++|.+.+..+-
T Consensus 13 ~I~~L-~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~G 68 (86)
T 3k4g_A 13 PVDDL-ELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASRG 68 (86)
T ss_dssp BGGGG-CCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTTT
T ss_pred cHHHh-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHHcC
Confidence 45566 78888889999999999999999999988876 67777888888887663
No 276
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=79.62 E-value=4.5 Score=49.20 Aligned_cols=142 Identities=10% Similarity=0.044 Sum_probs=72.1
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEE----EEcCCCCcch-
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMV----EMTGDYTPDL- 777 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~----~~~g~~~~~~- 777 (1492)
.+.-++|.|++|+|||..++..+...... .+.+++|+.---. ..|+..++.... .|+... ...|....+.
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~s-~~~l~~r~~~~~---~~~~~~~~~~~~~g~l~~~~~ 315 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEES-VEETAEDLIGLH---NRVRLRQSDSLKREIIENGKF 315 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSSC-HHHHHHHHHHHH---TTSCCTTCHHHHHHHHHTSHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccCC-HHHHHHHHHHHH---cCCChhhccccccCCCCHHHH
Confidence 67889999999999999887766665442 2567888765322 234444432211 122110 0001000000
Q ss_pred -----hccCCCcEEEE-Cc-----hhhhHhhhcccCccccCcccEEEEecccccCCC-----CccHHHHHHHHHHHhhhc
Q 043190 778 -----MALLSADIIIS-TP-----EKWDGISRNWHSRNYVKKVGLMILDEIHLLGAE-----RGPILEVIVSRMRYISSQ 841 (1492)
Q Consensus 778 -----~~~~~~~Iiv~-Tp-----e~l~~l~~~~~~~~~l~~i~liViDEaH~l~~~-----~g~~~~~i~~~l~~~~~~ 841 (1492)
.......+.+. +| +.+...++.... -..+++||||=++.+... +...+..++..++.+...
T Consensus 316 ~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~---~~~~~lvVID~l~~l~~~~~~~~~~~~~~~~~~~Lk~lak~ 392 (503)
T 1q57_A 316 DQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRS---GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKS 392 (503)
T ss_dssp HHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHH---TTCCSEEEEECTTCCCSCCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHH---hcCCCEEEEccchhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00112345543 22 233333332111 135889999999876421 222344566666666544
Q ss_pred cCCceEEEEEcCC
Q 043190 842 TERAVRFIGLSTA 854 (1492)
Q Consensus 842 ~~~~~~ii~lSAT 854 (1492)
. ++.++++|-.
T Consensus 393 ~--~i~vi~~~q~ 403 (503)
T 1q57_A 393 T--GVVLVVICHL 403 (503)
T ss_dssp H--TCEEEEEEEC
T ss_pred H--CCeEEEEEcC
Confidence 3 5666666543
No 277
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.18 E-value=2.2 Score=50.19 Aligned_cols=50 Identities=26% Similarity=0.420 Sum_probs=31.0
Q ss_pred CCHHHHHHHHhhh-cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE
Q 043190 689 FNPIQTQIFHILY-HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI 740 (1492)
Q Consensus 689 l~~~Q~~~i~~~~-~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i 740 (1492)
+.+-+.+++..++ ..+..++|.||||||||+.. ..++..+.. ..++++++
T Consensus 151 ~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l~~-~~g~I~~~ 201 (418)
T 1p9r_A 151 MTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQELNS-SERNILTV 201 (418)
T ss_dssp CCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHHCC-TTSCEEEE
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhcCC-CCCEEEEe
Confidence 3455666666554 34567899999999999863 334444433 24455544
No 278
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=79.13 E-value=1.2 Score=54.04 Aligned_cols=34 Identities=15% Similarity=0.102 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHhhhcCCCcEEEecCCCCCchHHH
Q 043190 688 HFNPIQTQIFHILYHTDNNVLLGAPTGSGKTISA 721 (1492)
Q Consensus 688 ~l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~ 721 (1492)
.+++.+.+-+......+.+++++||||||||+..
T Consensus 244 ~~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 244 TVPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp SSCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 3556666666665668889999999999999864
No 279
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=78.25 E-value=1.9 Score=36.89 Aligned_cols=53 Identities=21% Similarity=0.363 Sum_probs=42.6
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcCC
Q 043190 1321 ALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQRF 1374 (1492)
Q Consensus 1321 ~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~~ 1374 (1492)
++-+| +++......|+++||.|+.||...+.+++..+ ++++.+++|.+.+..+
T Consensus 17 ~Ie~L-~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e~ 71 (79)
T 3gfk_B 17 TIEEL-DLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEEL 71 (79)
T ss_dssp BGGGS-CCBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHHT
T ss_pred cHHHh-CCCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHHc
Confidence 44566 67888889999999999999999999998876 5566677777776544
No 280
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=78.10 E-value=2.2 Score=49.21 Aligned_cols=58 Identities=21% Similarity=0.007 Sum_probs=50.8
Q ss_pred CCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHHHhcCCCc
Q 043190 1319 DSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPR 1376 (1492)
Q Consensus 1319 ~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~~~~P~ 1376 (1492)
..|+..+||+|+...++|.+.||.|+.||+.++++.+...++...+..+.+.++....
T Consensus 177 ~lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~ 234 (356)
T 4dez_A 177 DRPPDALWGVGPKTTKKLAAMGITTVADLAVTDPSVLTTAFGPSTGLWLLLLAKGGGD 234 (356)
T ss_dssp TSCGGGSTTCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHHHCHHHHHHHHHHHTTCCC
T ss_pred cCcHHHHcCCchhHHHHHHHcCCCeecccccCCHHHHHHHhCChHHHHHHHHHcCCCc
Confidence 3689999999999999999999999999999999999999987777778777766543
No 281
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=77.73 E-value=1.5 Score=40.77 Aligned_cols=56 Identities=14% Similarity=0.222 Sum_probs=49.2
Q ss_pred ccccccc-ccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccC
Q 043190 488 HPLRQFD-KELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYF 543 (1492)
Q Consensus 488 ~~L~Ql~-~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~ 543 (1492)
.++-.|+ ++|++..+++|.+.|+ |++++...++.+|..+-+ ++.-+.+|++.++.+
T Consensus 23 ~~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl 81 (114)
T 1b22_A 23 QPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKL 81 (114)
T ss_dssp CCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHH
T ss_pred ccHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHH
Confidence 3566666 3689999999999999 999999999999999988 888999999998875
No 282
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=77.41 E-value=1.1 Score=37.50 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=44.0
Q ss_pred cccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhcc
Q 043190 490 LRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGY 542 (1492)
Q Consensus 490 L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~ 542 (1492)
|.+.. +|++..+++|...|+ |++++...+++++..+-| ++..+.++.+.++.
T Consensus 8 f~~~l-gI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~I~G~dE~~a~~l~~~A~~ 61 (70)
T 1u9l_A 8 FTKYL-DIDEDFATVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKN 61 (70)
T ss_dssp HHHHH-TCCHHHHHHHHHTTCCCHHHHHHSCHHHHTTSTTCCHHHHHHHHHHHHH
T ss_pred HHHhC-CCCHHHHHHHHHcCcCcHHHHHcCCHHHHhhccCCCHHHHHHHHHHHHH
Confidence 45666 899999999999999 999999999999998877 67777777776653
No 283
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=76.29 E-value=1.8 Score=38.47 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=30.9
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHH
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKE 1353 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~ 1353 (1492)
..|..||+||+...+.|.+.||.|++||....+.
T Consensus 4 ~~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga~ 37 (93)
T 3bqs_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSK 37 (93)
T ss_dssp SCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHHH
T ss_pred HHhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHH
Confidence 5688999999999999999999999999988644
No 284
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.62 E-value=2.3 Score=54.09 Aligned_cols=18 Identities=44% Similarity=0.724 Sum_probs=15.9
Q ss_pred CCcEEEecCCCCCchHHH
Q 043190 704 DNNVLLGAPTGSGKTISA 721 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~ 721 (1492)
.+.+|+.||.|+|||+.+
T Consensus 238 p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999975
No 285
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=75.25 E-value=2.3 Score=37.85 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=31.1
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHH
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKE 1353 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~ 1353 (1492)
+.|..||++|+...+.|.+.||.|.++|..+.+.
T Consensus 4 ~~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~Ga~ 37 (93)
T 3mab_A 4 ANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSK 37 (93)
T ss_dssp CCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHCHH
T ss_pred HHHhhCCCCCHHHHHHHHHcCCCCHHHHHhCCHH
Confidence 4689999999999999999999999999998754
No 286
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=74.79 E-value=6.9 Score=46.22 Aligned_cols=35 Identities=34% Similarity=0.334 Sum_probs=23.1
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA 741 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~ 741 (1492)
..++++|++|+|||+.+.......... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~--G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR--GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH--HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 478899999999998765443333222 45666654
No 287
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=74.41 E-value=7.8 Score=46.62 Aligned_cols=19 Identities=47% Similarity=0.583 Sum_probs=15.9
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+++.||+|+|||+.+-
T Consensus 64 p~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp CSEEEEECSSSSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3469999999999998754
No 288
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=74.23 E-value=0.64 Score=49.69 Aligned_cols=54 Identities=22% Similarity=0.305 Sum_probs=0.0
Q ss_pred CCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhc
Q 043190 1319 DSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQ 1372 (1492)
Q Consensus 1319 ~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~ 1372 (1492)
.+.|.++||||+..++.|.++|+.|+++|...+.+++..+ ++++..+.|...+.
T Consensus 14 ~~~L~~IpGIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~ 69 (241)
T 1vq8_Y 14 YTELTDISGVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVG 69 (241)
T ss_dssp --------------------------------------------------------
T ss_pred hhHHhcCCCCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHH
Confidence 3689999999999999998889999999998888888876 66766666655554
No 289
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=74.08 E-value=1.8 Score=48.21 Aligned_cols=45 Identities=13% Similarity=0.106 Sum_probs=35.1
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVR 748 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~ 748 (1492)
.+ .++|.+|+|+|||+.++..+........+.+++|+..-.++..
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 45 6899999999999998887777665434789999987766543
No 290
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=73.67 E-value=2.6 Score=47.58 Aligned_cols=36 Identities=14% Similarity=0.207 Sum_probs=24.3
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhc-cCCCceEEEEc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFN-TQSDMKVVYIA 741 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~-~~~~~~~l~i~ 741 (1492)
+.++++.||||+|||..+... ...+. . .+..++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~ai-a~~~~~~-~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAM-AHELSEK-KGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHH-HHHHHHH-SCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHH-HHHHHHh-cCCcEEEEE
Confidence 579999999999999876543 33333 2 245565543
No 291
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=73.05 E-value=3.5 Score=49.53 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=49.7
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHHHhcCCC
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFP 1375 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~~~~P 1375 (1492)
.|+..|||||+...++|.+.||.|+.||+.++.+.+...++...+..+.+.++-+.
T Consensus 315 LPV~~l~GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~fG~~~g~~L~~~a~GiD 370 (504)
T 3gqc_A 315 QLVTNLPGVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFGPKTGQMLYRFCRGLD 370 (504)
T ss_dssp SBGGGSTTCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHHHCHHHHHHHHHHTTTCC
T ss_pred CChhHhhCcCHHHHHHHHHcCCCcHHHHHhccHHHHHHhhChhHHHHHHHHhcCCC
Confidence 58999999999999999999999999999999999999998766777877766554
No 292
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=72.71 E-value=2.5 Score=50.47 Aligned_cols=43 Identities=16% Similarity=0.276 Sum_probs=31.6
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIV 747 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La 747 (1492)
.+.+++|.|+||||||......+.+.+. .+..++++=|..++.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~--~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLL--RGDRMVIVDPNGDML 94 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHH--TTCEEEEEEETTHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHH--CCCcEEEEeCCCchh
Confidence 3579999999999999975333333333 267888999988765
No 293
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=72.67 E-value=2.9 Score=48.13 Aligned_cols=64 Identities=19% Similarity=0.126 Sum_probs=53.9
Q ss_pred HHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHHHhcCCCc
Q 043190 1310 VMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPR 1376 (1492)
Q Consensus 1310 i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~~~~P~ 1376 (1492)
+.+-+|. .|+..+||+|+...++|.+.||+|+.||..++.+.+...++...+..+.+.++....
T Consensus 171 ~~~~L~~---lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~ 234 (352)
T 1jx4_A 171 VKRLIRE---LDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIGEAKAKYLISLARDEYN 234 (352)
T ss_dssp HHHHHHH---SBGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHHHHHHHCHHHHHHHHHHHTTCCC
T ss_pred HHHHHHh---CCCCcccccCHHHHHHHHHcCCchHHHHHCCCHHHHHHhcChhHHHHHHHHhCCCCC
Confidence 4445553 589999999999999999999999999999999999998887657788888876654
No 294
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=72.27 E-value=4.1 Score=48.32 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=48.1
Q ss_pred CCcccccCCCCHHHHHHHHh--CCCCCHHHHhcC-CHHHHhhhhCCchHHHHHHHhcCC
Q 043190 1319 DSALWMFPCMNNDLLGTLRA--RGISTVQQLLDI-PKENLQTVIGNFPVSRLHQDLQRF 1374 (1492)
Q Consensus 1319 ~~~L~qlp~i~~~~~~~l~~--~~i~s~~~l~~~-~~~~~~~~l~~~~~~~i~~~~~~~ 1374 (1492)
..|+..|||+|+...++|.+ .||.|+.||+.+ +.+.+...++...+..+.+.++..
T Consensus 240 ~lpv~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~~~~~~L~~~fG~~~g~~l~~~a~G~ 298 (434)
T 2aq4_A 240 SFKLDDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVGSKLGMKIHLALQGQ 298 (434)
T ss_dssp TCCGGGSTTCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHHHHHCSSHHHHHHHHTTTC
T ss_pred cCCcccccCcCHHHHHHHHHhcCCceEHHHHHhcCCHHHHHHHhCHHHHHHHHHHhcCC
Confidence 37899999999999999999 899999999999 999999888876666666666544
No 295
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=71.88 E-value=3.7 Score=36.58 Aligned_cols=52 Identities=23% Similarity=0.304 Sum_probs=42.3
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhc
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQ 1372 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~ 1372 (1492)
..|..+||+|+..++.|.+. +.++.++...+.+++..+ +++.....|..+++
T Consensus 32 ~~L~~IpgIG~~~A~~Ll~~-fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 32 ECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHTTSTTCCHHHHHHHHHH-HSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHh
Confidence 35678999999999988753 457999999999998887 78888888887764
No 296
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=71.50 E-value=2.4 Score=48.67 Aligned_cols=37 Identities=35% Similarity=0.512 Sum_probs=23.4
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI 740 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i 740 (1492)
.+..++|+||||||||+..- .++..+....++.++.+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~-~l~g~~~~~~~~~i~t~ 158 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLA-AMLDYLNNTKYHHILTI 158 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHH-HHHHHHHHHCCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHH-HHHhcccCCCCcEEEEc
Confidence 55689999999999998642 34444433224455443
No 297
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=71.39 E-value=3.2 Score=57.11 Aligned_cols=40 Identities=18% Similarity=0.132 Sum_probs=30.4
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLK 744 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r 744 (1492)
.+..+++.||+|+|||..+...+...... +.+++|+.--.
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~--g~~VlyiS~Ee 770 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEH 770 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTS
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHc--CCCeEEEeccc
Confidence 67899999999999999887766655432 56788876543
No 298
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=71.38 E-value=2.8 Score=48.36 Aligned_cols=60 Identities=18% Similarity=0.156 Sum_probs=52.3
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHHHhcCCCceEE
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPRIQV 1379 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~~~~P~i~i 1379 (1492)
.|+..|||+|+...++|.+.||.|+.||..++.+.+...++...+..+.+.++-...-.+
T Consensus 179 lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~~~v 238 (354)
T 3bq0_A 179 LDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQNKYSEPV 238 (354)
T ss_dssp CBSTTSTTCCHHHHHHHTTTTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHHTTCCCCCC
T ss_pred CCcccccCcCHHHHHHHHHcCCccHHHHhcCCHHHHHHHHCHHHHHHHHHHhCCCCCCCC
Confidence 589999999999999999999999999999999999999987657888888877665443
No 299
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=71.04 E-value=3.6 Score=48.47 Aligned_cols=56 Identities=18% Similarity=0.171 Sum_probs=48.8
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHHHhcCCCc
Q 043190 1321 ALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPR 1376 (1492)
Q Consensus 1321 ~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~~~~P~ 1376 (1492)
|+..+||+|+...++|.+.||.|+.||+.++.+.+...++...+..+.+.++-+..
T Consensus 235 pv~~l~GIG~~t~~~L~~lGI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~ 290 (420)
T 3osn_A 235 HIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKLSFGEDN 290 (420)
T ss_dssp SGGGSTTCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHccCCCHHHHHHHHHhCCCcHHHHhhCCHHHHHHHhCchHHHHHHHHhcCCCc
Confidence 58899999999999999999999999999999999988887667778777755543
No 300
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3
Probab=70.97 E-value=2.3 Score=36.63 Aligned_cols=53 Identities=11% Similarity=0.037 Sum_probs=42.9
Q ss_pred cccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhc-CCchHHHHHHHhc
Q 043190 488 HPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIR-YTPGGRLVKQYLG 541 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~ 541 (1492)
..|.++| +||+..+++|.+.--+++.+.+.+.+++..+-+ .+..+..|..+++
T Consensus 24 ~~L~~I~-gIG~~~A~~Ll~~fgsl~~l~~a~~eeL~~i~GIG~~~a~~I~~~~~ 77 (78)
T 1kft_A 24 SSLETIE-GVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLK 77 (78)
T ss_dssp CGGGGCT-TCSSSHHHHHHHHHSCHHHHHHCCHHHHTTSSSTTSHHHHHHHHHHT
T ss_pred HHHhcCC-CCCHHHHHHHHHHcCCHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHh
Confidence 5788999 999999999987633899999999999888744 4777777777654
No 301
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=70.79 E-value=12 Score=48.13 Aligned_cols=21 Identities=38% Similarity=0.638 Sum_probs=17.6
Q ss_pred cCCCcEEEecCCCCCchHHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~ 722 (1492)
..++.++++||+|||||+.+-
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHH
Confidence 356789999999999998754
No 302
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=70.42 E-value=4.9 Score=51.18 Aligned_cols=19 Identities=42% Similarity=0.677 Sum_probs=16.1
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+++.||.|+|||+.+-
T Consensus 511 ~~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CSCCEEESSTTSSHHHHHH
T ss_pred CceEEEecCCCCCchHHHH
Confidence 4678999999999998653
No 303
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=69.95 E-value=2.5 Score=48.76 Aligned_cols=58 Identities=17% Similarity=0.170 Sum_probs=50.8
Q ss_pred CCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHHHhcCCCc
Q 043190 1319 DSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPR 1376 (1492)
Q Consensus 1319 ~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~~~~P~ 1376 (1492)
..|+..+||+|+...++|.+.||.|+.||+.++.+.+...+++..+..+.+.++-...
T Consensus 178 ~lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG~~~g~~l~~~a~G~d~ 235 (362)
T 4f4y_A 178 ELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELEKITGKAKALYLLKLAQDEYN 235 (362)
T ss_dssp TCBSTTSTTCCSTTHHHHHHTTCCBGGGGTTSCHHHHHHHHCHHHHHHHHHHHTTCCC
T ss_pred hCChhhccCCCHHHHHHHHHcCCChHHHHhcCCHHHHHHHhChHHHHHHHHHhcCCCC
Confidence 3589999999999999999999999999999999999998987777788877766554
No 304
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=69.41 E-value=3.8 Score=36.27 Aligned_cols=53 Identities=23% Similarity=0.301 Sum_probs=42.8
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcC
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQR 1373 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~ 1373 (1492)
..|..+||+|+..++.|.+. +.++.++...+.+++..+ +++.....|..+++.
T Consensus 19 ~~L~~IpgIG~~~A~~Ll~~-fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 19 ECLTTVKSVNKTDSQTLLTT-FGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHHTTSSSCCHHHHHHHHHH-TCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHcCCCCCHHHHHHHHHH-CCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 35778999999999988763 558999999999998877 677777888877753
No 305
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=68.61 E-value=2.3 Score=47.96 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=16.0
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
+..++|+||||||||..+.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4578999999999998653
No 306
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=68.47 E-value=6.7 Score=43.74 Aligned_cols=48 Identities=25% Similarity=0.295 Sum_probs=26.7
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMND 753 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~ 753 (1492)
++.+.+.+++|+|||+.+...... +.. .+++++++- +.+..+..+...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~-~~~-~~~~v~l~~~d~~~~~~~~ql~~ 147 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY-YKG-KGRRPLLVAADTQRPAAREQLRL 147 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH-HHH-TTCCEEEEECCSSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH-cCCeEEEecCCcccHhHHHHHHH
Confidence 456778899999998765433222 222 255665553 334444333333
No 307
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=68.29 E-value=4.1 Score=47.79 Aligned_cols=41 Identities=27% Similarity=0.477 Sum_probs=31.2
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKA 745 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~ 745 (1492)
.+.+++|.||||||||+..-..+.+... .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~--~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM--QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH--CCCEEEEEeCCcC
Confidence 5679999999999999876555544433 3678888888765
No 308
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=68.04 E-value=4 Score=47.09 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=19.5
Q ss_pred HhhhcCCCcEEEecCCCCCchHHH
Q 043190 698 HILYHTDNNVLLGAPTGSGKTISA 721 (1492)
Q Consensus 698 ~~~~~~~~~vli~apTGsGKT~~~ 721 (1492)
...+..|..++++||||||||+..
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHH
T ss_pred HHHHhcCCEEEEECCCCCCHHHHH
Confidence 334457899999999999999853
No 309
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=67.84 E-value=3 Score=45.77 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=18.5
Q ss_pred hcCCCcEEEecCCCCCchHHHH
Q 043190 701 YHTDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 701 ~~~~~~vli~apTGsGKT~~~~ 722 (1492)
...+.++++.||+|+|||..+-
T Consensus 26 ~~~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHHH
T ss_pred hCCCCCEEEECCCCCcHHHHHH
Confidence 3467899999999999998764
No 310
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=67.83 E-value=2.8 Score=42.91 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=17.0
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.++-++++||+|||||+..-
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~ 23 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKN 23 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999998654
No 311
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=67.83 E-value=3.1 Score=48.22 Aligned_cols=38 Identities=26% Similarity=0.496 Sum_probs=24.3
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI 740 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i 740 (1492)
..+..++++||||||||+..- .++..+.....++++++
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~-~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIA-SMIDYINQTKSYHIITI 171 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHH-HHHHHHHHHSCCEEEEE
T ss_pred cCCCEEEEECCCCCCHHHHHH-HHHhhcCcCCCcEEEEe
Confidence 467789999999999998643 33333332224555544
No 312
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=67.68 E-value=4.6 Score=35.86 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=33.3
Q ss_pred CcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHH
Q 043190 487 QHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIG 524 (1492)
Q Consensus 487 ~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~ 524 (1492)
...|..|| +||+...+.|.+-|| |.++|+.+.+.+.=
T Consensus 3 m~~L~dLP-Nig~~~e~~L~~~GI~t~~~Lr~~Ga~~ay 40 (93)
T 3mab_A 3 LANLSELP-NIGKVLEQDLIKAGIKTPVELKDVGSKEAF 40 (93)
T ss_dssp CCCGGGST-TCCHHHHHHHHHTTCCSHHHHHHHCHHHHH
T ss_pred HHHHhhCC-CCCHHHHHHHHHcCCCCHHHHHhCCHHHHH
Confidence 46799999 999999999999999 99999999987753
No 313
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=67.06 E-value=2.9 Score=43.96 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=17.6
Q ss_pred cCCCcEEEecCCCCCchHHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~ 722 (1492)
..+.-++++||+|||||+.+-
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHH
Confidence 357789999999999999754
No 314
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=66.94 E-value=3 Score=43.06 Aligned_cols=20 Identities=30% Similarity=0.356 Sum_probs=16.6
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.++-+++.||||+|||..+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~ 52 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETAL 52 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46678999999999997653
No 315
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=66.61 E-value=2.7 Score=46.00 Aligned_cols=21 Identities=33% Similarity=0.501 Sum_probs=17.7
Q ss_pred hcCCCcEEEecCCCCCchHHH
Q 043190 701 YHTDNNVLLGAPTGSGKTISA 721 (1492)
Q Consensus 701 ~~~~~~vli~apTGsGKT~~~ 721 (1492)
...+..+.+.||||||||+..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 347788999999999999864
No 316
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=66.45 E-value=3.9 Score=46.41 Aligned_cols=49 Identities=10% Similarity=0.103 Sum_probs=38.7
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhh--CCchHHHHHH
Q 043190 1321 ALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVI--GNFPVSRLHQ 1369 (1492)
Q Consensus 1321 ~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l--~~~~~~~i~~ 1369 (1492)
+|..|||+++..+++|+++|+.|+++++..++.++..+. ++....++..
T Consensus 4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~ 54 (322)
T 2i1q_A 4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIM 54 (322)
T ss_dssp -CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHH
T ss_pred cHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHH
Confidence 678899999999999999999999999999988887653 3333444433
No 317
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=66.39 E-value=4.1 Score=36.43 Aligned_cols=53 Identities=13% Similarity=0.160 Sum_probs=43.1
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhcCC
Q 043190 1321 ALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQRF 1374 (1492)
Q Consensus 1321 ~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~~~ 1374 (1492)
++-+| .++.....+|+++||.|+.||...+.+++..+ ++.+-+++|.+.+..+
T Consensus 25 ~Ie~L-~LSvRs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~ 79 (98)
T 1coo_A 25 PVDDL-ELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASR 79 (98)
T ss_dssp BGGGG-TCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHHHHHHT
T ss_pred cHHHh-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 44455 57777888999999999999999999998876 6777788888777655
No 318
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=66.37 E-value=4.3 Score=36.08 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=33.0
Q ss_pred CcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHH
Q 043190 487 QHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIG 524 (1492)
Q Consensus 487 ~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~ 524 (1492)
...|..|| +||+...+.|.+-|| |.++|+.+.+.+.=
T Consensus 3 ~~~L~~LP-NiG~~~e~~L~~vGI~s~e~L~~~Ga~~ay 40 (93)
T 3bqs_A 3 LANLSELP-NIGKVLEQDLIKAGIKTPVELKDVGSKEAF 40 (93)
T ss_dssp CSCGGGST-TCCHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred hHHhhcCC-CCCHHHHHHHHHcCCCCHHHHHhCCHHHHH
Confidence 35789999 999999999999999 99999999887753
No 319
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=65.99 E-value=2.5 Score=43.37 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=17.7
Q ss_pred CCcEEEecCCCCCchHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~ 724 (1492)
..+++++||+|||||+++-..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~L 25 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQL 25 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 568999999999999987643
No 320
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=65.96 E-value=2.6 Score=44.03 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=18.6
Q ss_pred CCCcEEEecCCCCCchHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~ 724 (1492)
.++.++++||+|||||+++-..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~L 45 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAF 45 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHH
Confidence 5679999999999999986543
No 321
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=65.89 E-value=4.1 Score=46.25 Aligned_cols=52 Identities=12% Similarity=0.083 Sum_probs=45.8
Q ss_pred ccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhc
Q 043190 489 PLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLG 541 (1492)
Q Consensus 489 ~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~ 541 (1492)
+|..|| ++++..+++|.++|+ |+++++..+++++.++.+ +++.+.+++..+.
T Consensus 4 ~~~~l~-gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~ 57 (322)
T 2i1q_A 4 NLTDLP-GVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGAR 57 (322)
T ss_dssp -CTTST-TCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred cHhhcC-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHH
Confidence 688999 999999999999999 999999999999999888 7777777777665
No 322
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=65.23 E-value=4.3 Score=42.35 Aligned_cols=51 Identities=20% Similarity=0.174 Sum_probs=43.9
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCC-chHHHHHHHh
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGN-FPVSRLHQDL 1371 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~-~~~~~i~~~~ 1371 (1492)
++|..+||+|+.+++.|.++ +.|++.+.+++.+++.+++++ ...+.|.+++
T Consensus 168 s~LdgIpGIG~k~ak~Ll~~-FgSl~~i~~As~EeL~~VIG~~~~A~~I~~~f 219 (220)
T 2nrt_A 168 SVLDNVPGIGPIRKKKLIEH-FGSLENIRSASLEEIARVIGSTEIARRVLDIL 219 (220)
T ss_dssp HHHTTSTTCCHHHHHHHHHH-HCSHHHHHTSCHHHHHHHHTCHHHHHHHHHHC
T ss_pred ccccCCCCcCHHHHHHHHHH-cCCHHHHHhCCHHHHHHHhChHHHHHHHHHHh
Confidence 67888999999999999864 568999999999999988888 8888887765
No 323
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=64.90 E-value=5.5 Score=40.66 Aligned_cols=19 Identities=42% Similarity=0.469 Sum_probs=16.6
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
..++++.||+|+|||..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4689999999999998764
No 324
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=64.23 E-value=7 Score=44.98 Aligned_cols=59 Identities=10% Similarity=0.057 Sum_probs=52.6
Q ss_pred cccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhcCCchHHHHHHHhccCCceeE
Q 043190 488 HPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIRYTPGGRLVKQYLGYFPSIQL 548 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~~~P~~~i 548 (1492)
.|+..++ +||+...++|.+.|+ |+.||.+++++.+...+| ...|..+.+.++....-.+
T Consensus 178 lpv~~l~-GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG-~~~g~~l~~~a~G~d~~~v 237 (356)
T 4dez_A 178 RPPDALW-GVGPKTTKKLAAMGITTVADLAVTDPSVLTTAFG-PSTGLWLLLLAKGGGDTEV 237 (356)
T ss_dssp SCGGGST-TCCHHHHHHHHHTTCCSHHHHHTSCHHHHHHHHC-HHHHHHHHHHHTTCCCCCC
T ss_pred CcHHHHc-CCchhHHHHHHHcCCCeecccccCCHHHHHHHhC-ChHHHHHHHHHcCCCcccc
Confidence 6889999 999999999999999 999999999999999998 5678889999988766554
No 325
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=64.17 E-value=3.2 Score=46.26 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.5
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
+.-++|+||||||||..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHH
Confidence 3467899999999998753
No 326
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=63.93 E-value=4.2 Score=46.28 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=18.8
Q ss_pred HhhhcCCCcEEEecCCCCCchHH
Q 043190 698 HILYHTDNNVLLGAPTGSGKTIS 720 (1492)
Q Consensus 698 ~~~~~~~~~vli~apTGsGKT~~ 720 (1492)
...+..+..+.+.||||||||+.
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHH
T ss_pred hhhccCCCEEEEECCCCCCHHHH
Confidence 33345788999999999999984
No 327
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=63.56 E-value=3 Score=42.46 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=16.9
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
+..++++|+.|||||+++-.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 46789999999999998643
No 328
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=63.56 E-value=3.3 Score=46.06 Aligned_cols=18 Identities=44% Similarity=0.528 Sum_probs=14.9
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
.-++|+||||||||..+.
T Consensus 11 ~~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCccCHHHHHH
Confidence 457889999999998753
No 329
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=63.04 E-value=5.1 Score=33.94 Aligned_cols=51 Identities=16% Similarity=0.243 Sum_probs=40.9
Q ss_pred cccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh--hCCchHHHHHHHhc
Q 043190 1321 ALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV--IGNFPVSRLHQDLQ 1372 (1492)
Q Consensus 1321 ~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~--l~~~~~~~i~~~~~ 1372 (1492)
.|..+||+|+..++.|.++ +.++.++...+.+++..+ +++.....|..++.
T Consensus 15 ~L~~i~giG~~~a~~Ll~~-fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 15 IVEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HHTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHcCCCCCCHHHHHHHHHH-cCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 4778999999999988763 567999999998888776 66777777777664
No 330
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=62.93 E-value=4.1 Score=45.78 Aligned_cols=21 Identities=33% Similarity=0.601 Sum_probs=18.3
Q ss_pred cCCCcEEEecCCCCCchHHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~ 722 (1492)
..+.++++.||||+|||.++-
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHH
T ss_pred CCCCcEEEECCCCchHHHHHH
Confidence 467899999999999998764
No 331
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=62.65 E-value=7 Score=40.97 Aligned_cols=32 Identities=31% Similarity=0.276 Sum_probs=25.3
Q ss_pred CHHHHHHHHhhhcCCCcEEEecCCCCCchHHHH
Q 043190 690 NPIQTQIFHILYHTDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 690 ~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~ 722 (1492)
+.-|..++..+ ..|+.+.+.||.|||||+..-
T Consensus 9 ~~g~~~~l~~i-~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 9 TLGQKHYVDAI-DTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp SHHHHHHHHHH-HHCSEEEEECCTTSSTTHHHH
T ss_pred CHhHHHHHHhc-cCCCEEEEECCCCCCHHHHHH
Confidence 44566778776 478899999999999998643
No 332
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=62.35 E-value=1.6 Score=46.64 Aligned_cols=54 Identities=11% Similarity=0.169 Sum_probs=0.0
Q ss_pred CcccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhc
Q 043190 487 QHPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLG 541 (1492)
Q Consensus 487 ~~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~ 541 (1492)
...|.++| +||+..+++|.+.|+ |+++|...+.++|..+-| .++.++.|...++
T Consensus 14 ~~~L~~Ip-GIGpk~a~~Ll~~gf~sve~L~~a~~~eL~~v~GIG~ktAe~I~~~l~ 69 (241)
T 1vq8_Y 14 YTELTDIS-GVGPSKAESLREAGFESVEDVRGADQSALADVSGIGNALAARIKADVG 69 (241)
T ss_dssp ---------------------------------------------------------
T ss_pred hhHHhcCC-CCCHHHHHHHHHcCCCCHHHHHhCCHHHHHhccCCCHHHHHHHHHHHH
Confidence 36899999 999999999988888 999999999999988855 4666777766554
No 333
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=62.27 E-value=4.3 Score=42.13 Aligned_cols=20 Identities=15% Similarity=0.305 Sum_probs=17.2
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.++-++++||+|+|||+..-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 57889999999999998654
No 334
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=62.25 E-value=56 Score=38.15 Aligned_cols=50 Identities=24% Similarity=0.271 Sum_probs=29.5
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWK 755 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~ 755 (1492)
+..+.+.+++|+|||+.+...... +.. .+.+++++. +.+..+.++...+.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~-l~~-~g~~Vllvd~D~~r~aa~~qL~~~~ 149 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY-YKG-KGRRPLLVAADTQRPAAREQLRLLG 149 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH-HHT-TTCCEEEEECCSSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH-cCCeEEEeeccccCchhHHHHHHhc
Confidence 346778899999999865543322 222 255665554 45555554444443
No 335
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=62.21 E-value=3.8 Score=42.67 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=15.8
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.++.+.++||+|||||+..-
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~ 22 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLK 22 (198)
T ss_dssp --CCEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999998654
No 336
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=61.76 E-value=3 Score=45.46 Aligned_cols=17 Identities=47% Similarity=0.304 Sum_probs=14.6
Q ss_pred cEEEecCCCCCchHHHH
Q 043190 706 NVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~ 722 (1492)
.++|+||||||||+.+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 57899999999999764
No 337
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=61.70 E-value=5.9 Score=37.35 Aligned_cols=32 Identities=19% Similarity=0.351 Sum_probs=27.5
Q ss_pred CcccccCCCCHHHHHHHHhCC-CCCHHHHhcCC
Q 043190 1320 SALWMFPCMNNDLLGTLRARG-ISTVQQLLDIP 1351 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~-i~s~~~l~~~~ 1351 (1492)
..|.+||||++..++++-++| ++|++||.+.+
T Consensus 63 ~eL~~LpGiGp~~A~~II~~GpF~svedL~~V~ 95 (134)
T 1s5l_U 63 AAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIP 95 (134)
T ss_dssp GGGGGSTTCTHHHHHHHHHTCCCSSGGGGGGCT
T ss_pred HHHHHCCCCCHHHHHHHHHcCCCCCHHHHHhCC
Confidence 468999999999999887775 89999998875
No 338
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=61.64 E-value=5.9 Score=45.37 Aligned_cols=50 Identities=10% Similarity=0.173 Sum_probs=0.0
Q ss_pred cccccc-ccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHH
Q 043190 489 PLRQFD-KELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQ 538 (1492)
Q Consensus 489 ~L~Ql~-~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~ 538 (1492)
++.+|| +++++..+++|.++|+ |++++...++.++..+.+ ++....++++
T Consensus 26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~ 78 (343)
T 1v5w_A 26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKE 78 (343)
T ss_dssp -----------------------------------------------------
T ss_pred cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHH
Confidence 555555 3788999999999998 999999888888877665 4433333333
No 339
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=61.62 E-value=3.1 Score=42.05 Aligned_cols=19 Identities=37% Similarity=0.454 Sum_probs=16.1
Q ss_pred cEEEecCCCCCchHHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~ 724 (1492)
.++++||+|||||+++-..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999987644
No 340
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=61.50 E-value=3 Score=43.08 Aligned_cols=21 Identities=43% Similarity=0.501 Sum_probs=17.6
Q ss_pred cCCCcEEEecCCCCCchHHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~ 722 (1492)
..+..+++.||.|||||+.+-
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 367789999999999999653
No 341
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=61.20 E-value=3.6 Score=41.56 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=16.9
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.+..+++.||.|||||+.+-
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999999754
No 342
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5
Probab=61.18 E-value=7.3 Score=34.39 Aligned_cols=54 Identities=13% Similarity=0.026 Sum_probs=43.2
Q ss_pred cccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhc-CCchHHHHHHHhcc
Q 043190 488 HPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGY 542 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~ 542 (1492)
..|..+| +||+..+++|.+.--++..+.+.+.+++..+-+ .+..+..|..+++.
T Consensus 19 ~~L~~Ip-gIG~~~A~~Ll~~fgsl~~l~~a~~~eL~~i~GIG~~~a~~I~~~l~~ 73 (89)
T 1z00_A 19 ECLTTVK-SVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLHE 73 (89)
T ss_dssp HHHTTSS-SCCHHHHHHHHHHTCBHHHHHHCCHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred HHHHcCC-CCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3567899 999999999987633899999999999988844 46777888877753
No 343
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=60.73 E-value=7.4 Score=44.62 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=35.3
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV 1358 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~ 1358 (1492)
.++.+|||+++..+++|.++|+.|+++++.+++.++...
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~ 73 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEV 73 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHH
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhh
Confidence 468889999999999999999999999999998887765
No 344
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=60.57 E-value=6.9 Score=40.81 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=44.1
Q ss_pred cccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhcCC-chHHHHHHHh
Q 043190 488 HPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIRYT-PGGRLVKQYL 540 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~~~-~~~~~i~~~~ 540 (1492)
++|..+| +||+..+++|.++--|++.+.+++.+++.++++ + ..++.|.+++
T Consensus 168 s~LdgIp-GIG~k~ak~Ll~~FgSl~~i~~As~EeL~~VIG-~~~~A~~I~~~f 219 (220)
T 2nrt_A 168 SVLDNVP-GIGPIRKKKLIEHFGSLENIRSASLEEIARVIG-STEIARRVLDIL 219 (220)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHCSHHHHHTSCHHHHHHHHT-CHHHHHHHHHHC
T ss_pred ccccCCC-CcCHHHHHHHHHHcCCHHHHHhCCHHHHHHHhC-hHHHHHHHHHHh
Confidence 6788999 999999999988644999999999999999976 7 7888887764
No 345
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=60.27 E-value=4.7 Score=42.20 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=18.4
Q ss_pred cCCCcEEEecCCCCCchHHHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l 723 (1492)
..+..++++||+|||||+.+-.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHH
Confidence 3678899999999999997643
No 346
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5
Probab=60.07 E-value=7.7 Score=34.43 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=42.4
Q ss_pred cccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhc-CCchHHHHHHHhc
Q 043190 488 HPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIR-YTPGGRLVKQYLG 541 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~ 541 (1492)
..|..+| +||+..+++|.+.--+++++.+.+.+++..+-+ .+..+..|..+++
T Consensus 32 ~~L~~Ip-gIG~~~A~~Ll~~fgs~~~l~~as~~eL~~i~GIG~~~a~~I~~~l~ 85 (91)
T 2a1j_B 32 ECLTTVK-SVNKTDSQTLLTTFGSLEQLIAASREDLALCPGLGPQKARRLFDVLH 85 (91)
T ss_dssp HHHTTST-TCCHHHHHHHHHHHSSHHHHHSCCHHHHHTSSSCCSHHHHHHHHHHH
T ss_pred HHHHcCC-CCCHHHHHHHHHHCCCHHHHHhCCHHHHHhCCCCCHHHHHHHHHHHh
Confidence 3567899 999999999876533899999999999988844 4778888887764
No 347
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=59.81 E-value=7.8 Score=39.92 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=33.1
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLK 744 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r 744 (1492)
...++++..++|.|||.+++-..++.+.. +.+++++.-.+
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~--G~rV~~vQF~K 66 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH--GKNVGVVQFIK 66 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT--TCCEEEEESSC
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeC
Confidence 34589999999999999999888888765 78888886544
No 348
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=59.80 E-value=4.8 Score=41.98 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=17.1
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.|.-+.+.||+|||||+..-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 57788999999999998654
No 349
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=59.71 E-value=12 Score=51.72 Aligned_cols=88 Identities=19% Similarity=0.254 Sum_probs=58.1
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcchhccCCC
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRLVSQLGKEMVEMTGDYTPDLMALLSA 783 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~~~g~~v~~~~g~~~~~~~~~~~~ 783 (1492)
|+.+.+.+|.|||||+.++..+.+.... ++.++|+.+-.+|....+ +.+ |+.+ +
T Consensus 1431 g~~iei~g~~~sGkttl~~~~~a~~~~~--g~~~~~i~~e~~~~~~~~----~~~----Gv~~---------~------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIYA----RKL----GVDI---------D------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEECTTSCCCHHHH----HHT----TCCG---------G-------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCCCCHHHH----HHc----CCCH---------H-------
Confidence 5789999999999999988777665543 899999999887765532 222 4321 1
Q ss_pred cEEEECchh---hhHhhhcccCccccCcccEEEEeccccc
Q 043190 784 DIIISTPEK---WDGISRNWHSRNYVKKVGLMILDEIHLL 820 (1492)
Q Consensus 784 ~Iiv~Tpe~---l~~l~~~~~~~~~l~~i~liViDEaH~l 820 (1492)
+++++-|+. .......... -..+++||||.+-.+
T Consensus 1485 ~l~~~~p~~~e~~l~~~~~~~~---s~~~~~vvvDsv~al 1521 (1706)
T 3cmw_A 1485 NLLCSQPDTGEQALEICDALAR---SGAVDVIVVDSVAAL 1521 (1706)
T ss_dssp GCEEECCSSHHHHHHHHHHHHH---HTCCSEEEESCSTTC
T ss_pred HeEEeCCCcHHHHHHHHHHHHH---cCCCCEEEEccHHhC
Confidence 267777743 2222221111 235789999999865
No 350
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=59.54 E-value=4 Score=41.95 Aligned_cols=17 Identities=24% Similarity=0.640 Sum_probs=14.7
Q ss_pred CcEEEecCCCCCchHHH
Q 043190 705 NNVLLGAPTGSGKTISA 721 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~ 721 (1492)
+-++|+||.|+|||+..
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46899999999999864
No 351
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=59.37 E-value=4.1 Score=41.84 Aligned_cols=21 Identities=38% Similarity=0.583 Sum_probs=17.7
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+.+++++|+.|||||+++-.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~ 29 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEM 29 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999997643
No 352
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=59.33 E-value=4.1 Score=41.52 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=17.9
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+.+++++|+.|||||+++-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 467899999999999997654
No 353
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=58.77 E-value=8.5 Score=44.08 Aligned_cols=53 Identities=11% Similarity=0.119 Sum_probs=46.4
Q ss_pred cccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhc
Q 043190 488 HPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLG 541 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~ 541 (1492)
.+|.+|| ++++..+++|.++|+ |++++..+++.++.++.+ ++..+.++++.+.
T Consensus 35 ~~l~~l~-Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~ 89 (349)
T 1pzn_A 35 RSIEDLP-GVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAAR 89 (349)
T ss_dssp CCSSCCT-TCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred ccHHHcC-CCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHh
Confidence 4788999 999999999999999 999999999999999988 6666777776654
No 354
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=58.71 E-value=3.8 Score=41.53 Aligned_cols=22 Identities=32% Similarity=0.274 Sum_probs=18.3
Q ss_pred cCCCcEEEecCCCCCchHHHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l 723 (1492)
..|.-+.+.||+|||||+.+-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3677899999999999997653
No 355
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=57.92 E-value=12 Score=50.64 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=46.3
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhccC----------CCceEEEEcccHHHHHHHHHHHHHHhhhc
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNTQ----------SDMKVVYIAPLKAIVRERMNDWKDRLVSQ 761 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~~----------~~~~~l~i~P~r~La~q~~~~~~~~~~~~ 761 (1492)
..+|.|.-|||||.+...-+++.+... ...++|+|+=|++-|.++-+++.+.+...
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~~~ 83 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHEL 83 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHHHH
Confidence 459999999999998888888877532 23589999999999999999998877554
No 356
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=57.82 E-value=5.3 Score=41.03 Aligned_cols=18 Identities=22% Similarity=0.626 Sum_probs=15.0
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
+-+.+.||+|||||+..-
T Consensus 2 ~ii~l~GpsGaGKsTl~~ 19 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLK 19 (186)
T ss_dssp CCEEEESSSSSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 467899999999998653
No 357
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=57.76 E-value=38 Score=39.82 Aligned_cols=49 Identities=20% Similarity=0.262 Sum_probs=29.6
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDW 754 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~ 754 (1492)
+.++++|++|+|||+.+.-.+... ....+.+++++. |.+..+.++...+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l-~~~~G~kVllvd~D~~r~~a~~ql~~~ 151 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFL-REKHKKKVLVVSADVYRPAAIKQLETL 151 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH-HHTSCCCEEEEECCCSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HHhcCCeEEEEecCCCCccHHHHHHhh
Confidence 578888999999998766544333 222255665553 5555555444433
No 358
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=57.71 E-value=4.7 Score=45.30 Aligned_cols=18 Identities=39% Similarity=0.434 Sum_probs=15.3
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
..++|+||||||||..+.
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468999999999999653
No 359
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=57.60 E-value=11 Score=42.07 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=28.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc-cc-HHHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA-PL-KAIVRERMNDWK 755 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~-P~-r~La~q~~~~~~ 755 (1492)
.+..+.+.||+|||||+..-.. ...+.. .++++.+.. ++ +.-+.++...|.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~L-ag~l~~-~~g~V~l~g~d~~r~~a~~ql~~~~ 151 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKL-AHRLKN-EGTKVLMAAGDTFRAAASDQLEIWA 151 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHH-HHHHHH-TTCCEEEECCCCSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHH-HHHHHH-cCCeEEEEeecccchhHHHHHHHHH
Confidence 4667889999999999854332 122222 256666653 33 333333344443
No 360
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=57.44 E-value=5.6 Score=41.51 Aligned_cols=20 Identities=25% Similarity=0.441 Sum_probs=17.3
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.+..+++.||+|||||+.+-
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57789999999999998754
No 361
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=57.31 E-value=8.6 Score=40.57 Aligned_cols=26 Identities=35% Similarity=0.418 Sum_probs=20.0
Q ss_pred cEEEecCCCCCchHHHHHHHHHHhcc
Q 043190 706 NVLLGAPTGSGKTISAELAMLHLFNT 731 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~~l~~ 731 (1492)
++++.++.|+|||+.+.-........
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 78999999999999876555554443
No 362
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=56.88 E-value=5 Score=45.41 Aligned_cols=18 Identities=33% Similarity=0.326 Sum_probs=15.2
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
..++|+||||||||..+.
T Consensus 8 ~lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCcCcHHHHHH
Confidence 368899999999998753
No 363
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=56.84 E-value=4.5 Score=41.57 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=17.0
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
+..++++|+.|||||+++-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46789999999999997654
No 364
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=56.65 E-value=4.4 Score=40.79 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=15.5
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
.++++||.|||||+++-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999998654
No 365
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=56.44 E-value=8.5 Score=43.04 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=22.9
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA 741 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~ 741 (1492)
.+..+.+.||+|||||+..-... ..+.. .++++.+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~La-gll~~-~~g~V~l~g 137 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLG-RYYQN-LGKKVMFCA 137 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHH-HHHHT-TTCCEEEEC
T ss_pred CCeEEEEECCCCCcHHHHHHHHH-HHHHh-cCCEEEEEe
Confidence 45688899999999998643322 22222 355665553
No 366
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=56.34 E-value=4.7 Score=45.23 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=17.5
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.++.+++.||+|+|||+.+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 56789999999999999765
No 367
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=56.34 E-value=14 Score=31.20 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=41.8
Q ss_pred cccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccC
Q 043190 488 HPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYF 543 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~ 543 (1492)
.|+-++. ++....+.|.+.|| |+.+|.+.+.+++.++-+ .++-.++|.+.+..+
T Consensus 9 ~~Ie~L~--LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~~L~~~ 64 (73)
T 1z3e_B 9 MTIEELD--LSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEEL 64 (73)
T ss_dssp CBGGGSC--CBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHHHHHHT
T ss_pred CcHHHhC--CCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 4666666 78888889999999 999999999999887744 355666777766643
No 368
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=56.31 E-value=4.8 Score=41.91 Aligned_cols=21 Identities=33% Similarity=0.357 Sum_probs=17.7
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+..+++.||.|||||+.+-.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467899999999999997643
No 369
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=56.28 E-value=10 Score=44.57 Aligned_cols=58 Identities=10% Similarity=0.071 Sum_probs=51.4
Q ss_pred ccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhcCCchHHHHHHHhccCCceeE
Q 043190 489 PLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIRYTPGGRLVKQYLGYFPSIQL 548 (1492)
Q Consensus 489 ~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~~~P~~~i 548 (1492)
|+..|+ +||+...++|.+.|+ |+.||++++++.+...+| ...|..+.+.++.+..-.+
T Consensus 235 pv~~l~-GIG~~t~~~L~~lGI~TigdLa~~~~~~L~~~fG-~~~g~~L~~~a~G~d~~~V 293 (420)
T 3osn_A 235 HIKEIP-GIGYKTAKCLEALGINSVRDLQTFSPKILEKELG-ISVAQRIQKLSFGEDNSPV 293 (420)
T ss_dssp SGGGST-TCCHHHHHHHHHTTCCSHHHHHHSCHHHHHHHHH-HHHHHHHHHHHTTCCCCCC
T ss_pred cHHHcc-CCCHHHHHHHHHhCCCcHHHHhhCCHHHHHHHhC-chHHHHHHHHhcCCCcccc
Confidence 589999 999999999999999 999999999999999998 4578899999988866554
No 370
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=56.01 E-value=4.8 Score=45.01 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=17.3
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.++.+++.||+|+|||+.+-
T Consensus 53 ~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 36789999999999998764
No 371
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=55.91 E-value=11 Score=43.14 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=52.7
Q ss_pred cccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhcCCchHHHHHHHhccCCceeEE
Q 043190 488 HPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIRYTPGGRLVKQYLGYFPSIQLS 549 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~~~P~~~i~ 549 (1492)
.|+..+| +||+...++|.+.|+ |+.||.+++.+.+...+| ...|..+.+.++....-.++
T Consensus 178 lpv~~l~-GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG-~~~g~~l~~~a~G~d~~~v~ 238 (352)
T 1jx4_A 178 LDIADVP-GIGNITAEKLKKLGINKLVDTLSIEFDKLKGMIG-EAKAKYLISLARDEYNEPIR 238 (352)
T ss_dssp SBGGGST-TCCHHHHHHHHTTTCCBGGGGGSSCHHHHHHHHC-HHHHHHHHHHHTTCCCCCCC
T ss_pred CCCCccc-ccCHHHHHHHHHcCCchHHHHHCCCHHHHHHhcC-hhHHHHHHHHhCCCCCCCcc
Confidence 5899999 999999999999999 999999999999999998 23389999999988765553
No 372
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=55.79 E-value=9 Score=42.70 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=27.0
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
..|.-++|.||+|+|||+.+...+..... ..+.+++|+..
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~-~~G~~v~~~~~ 72 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT-AMGKKVGLAML 72 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH-TSCCCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH-HcCCeEEEEeC
Confidence 47889999999999999876544333322 22446777653
No 373
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=55.76 E-value=5 Score=35.99 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=25.7
Q ss_pred CcccccCCCCHHHHHHHHhC-CCCCHHHHhcCC
Q 043190 1320 SALWMFPCMNNDLLGTLRAR-GISTVQQLLDIP 1351 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~-~i~s~~~l~~~~ 1351 (1492)
..|.+|||||+..++++-++ +++|++||.+.+
T Consensus 26 ~eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V~ 58 (97)
T 3arc_U 26 AAFIQYRGLYPTLAKLIVKNAPYESVEDVLNIP 58 (97)
T ss_dssp GGGGGSTTCTTHHHHHHHHHCCCSSGGGGGGCT
T ss_pred HHHhHCCCCCHHHHHHHHHcCCCCCHHHHHhcc
Confidence 46889999999999877654 588998887653
No 374
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=55.63 E-value=4.8 Score=46.59 Aligned_cols=21 Identities=57% Similarity=0.759 Sum_probs=17.7
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+.++++.||+|+|||.++-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 456899999999999997643
No 375
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=55.45 E-value=4.6 Score=41.03 Aligned_cols=19 Identities=32% Similarity=0.230 Sum_probs=15.6
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
..++++|+.|||||+.+-.
T Consensus 3 ~~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHH
Confidence 3578999999999997643
No 376
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=55.38 E-value=6.2 Score=44.97 Aligned_cols=18 Identities=50% Similarity=0.748 Sum_probs=15.9
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
..+++.||+|+|||+.+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 689999999999998754
No 377
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=55.26 E-value=5.7 Score=41.00 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=18.3
Q ss_pred cCCCcEEEecCCCCCchHHHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l 723 (1492)
..+..+++.|+.|||||+++-.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 3567899999999999997654
No 378
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=55.15 E-value=4 Score=41.82 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=17.6
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+..+++.|+.|||||+++-.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456789999999999998654
No 379
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=55.14 E-value=4.8 Score=42.64 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=26.4
Q ss_pred CCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHh
Q 043190 1319 DSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQ 1356 (1492)
Q Consensus 1319 ~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~ 1356 (1492)
..|+..|||+|+...++|.+.||+|+.||+.++++.+.
T Consensus 183 ~lpv~~l~giG~~~~~~L~~~Gi~TigdL~~~~~~~L~ 220 (221)
T 1im4_A 183 ELDIDEIPGIGSVLARRLNELGIQKLRDILSKNYNELE 220 (221)
T ss_dssp TCBGGGSTTCCHHHHHHHHHTTCCBTTC----------
T ss_pred hCCcccccCCCHHHHHHHHHcCCCcHHHHHCCCHHHhh
Confidence 35899999999999999999999999999999876653
No 380
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=54.64 E-value=4.9 Score=40.71 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=17.3
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+..++++||.|||||+.+-.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356789999999999997643
No 381
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=54.53 E-value=5.4 Score=42.28 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=17.5
Q ss_pred cCCCcEEEecCCCCCchHHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~ 722 (1492)
..|+-++++||.|||||+..-
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk 34 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQ 34 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 468899999999999998643
No 382
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=54.50 E-value=10 Score=38.81 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=23.3
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI 740 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i 740 (1492)
.+..++++|+.|||||+++-... ..+.. .+..+.++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~-~~l~~-~~~~~~~~ 47 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLA-DLLQK-EGYRVEVL 47 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH-HHHHH-TTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHH-HHHHh-cCCeEEEe
Confidence 45688999999999999765432 23322 24455444
No 383
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=54.48 E-value=11 Score=43.33 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=53.1
Q ss_pred cccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhcCCch-HHHHHHHhccCCceeEE
Q 043190 488 HPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIRYTPG-GRLVKQYLGYFPSIQLS 549 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~~~~~-~~~i~~~~~~~P~~~i~ 549 (1492)
.|+..|| +||+...++|.+.|+ |+.||.+++.+.+...+| .. |..+.+.++....-.++
T Consensus 179 lpv~~l~-GiG~~~~~~L~~~Gi~t~~dL~~~~~~~L~~~fG--~~~g~~l~~~a~G~d~~~v~ 239 (354)
T 3bq0_A 179 LDIDEIP-GIGSVLARRLNELGIQKLRDILSKNYNELEKITG--KAKALYLLKLAQNKYSEPVE 239 (354)
T ss_dssp CBSTTST-TCCHHHHHHHTTTTCCBGGGGGGSCHHHHHHHHC--HHHHHHHHHHHTTCCCCCCC
T ss_pred CCccccc-CcCHHHHHHHHHcCCccHHHHhcCCHHHHHHHHC--HHHHHHHHHHhCCCCCCCCc
Confidence 5899999 999999999999999 999999999999999998 45 89999999998776654
No 384
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=54.14 E-value=5.2 Score=43.62 Aligned_cols=19 Identities=42% Similarity=0.707 Sum_probs=16.3
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+++.||+|+|||+.+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4579999999999998764
No 385
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.93 E-value=10 Score=44.59 Aligned_cols=19 Identities=37% Similarity=0.623 Sum_probs=16.6
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+|+.||+|+|||+.+-
T Consensus 215 prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHH
Confidence 5789999999999998753
No 386
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=53.82 E-value=5.5 Score=44.73 Aligned_cols=20 Identities=50% Similarity=0.644 Sum_probs=17.3
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
...++++.||+|+|||..+-
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 36789999999999998764
No 387
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5
Probab=53.80 E-value=8.2 Score=32.61 Aligned_cols=52 Identities=8% Similarity=0.111 Sum_probs=40.6
Q ss_pred ccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhc-CCchHHHHHHHhc
Q 043190 489 PLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIR-YTPGGRLVKQYLG 541 (1492)
Q Consensus 489 ~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~ 541 (1492)
.|.++| ++|+..++.|.+.--++..+.+.+.+++..+-+ .+..+..|...++
T Consensus 15 ~L~~i~-giG~~~a~~Ll~~fgs~~~l~~a~~~~L~~i~Gig~~~a~~i~~~~~ 67 (75)
T 1x2i_A 15 IVEGLP-HVSATLARRLLKHFGSVERVFTASVAELMKVEGIGEKIAKEIRRVIT 67 (75)
T ss_dssp HHTTST-TCCHHHHHHHHHHHCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred HHcCCC-CCCHHHHHHHHHHcCCHHHHHhCCHHHHhcCCCCCHHHHHHHHHHHh
Confidence 577899 999999999987533899999999998877744 4666777776654
No 388
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=53.78 E-value=13 Score=44.61 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=51.5
Q ss_pred cccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhcCCchHHHHHHHhccCCceeE
Q 043190 488 HPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIRYTPGGRLVKQYLGYFPSIQL 548 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~~~P~~~i 548 (1492)
.|+..|+ +||+...++|.+.|| |+.||++++...+...+| ...|..+.+.++.+..-.+
T Consensus 315 LPV~~l~-GIG~~t~~kL~~lGI~TigDLa~~~~~~L~~~fG-~~~g~~L~~~a~GiD~~pV 374 (504)
T 3gqc_A 315 QLVTNLP-GVGHSMESKLASLGIKTCGDLQYMTMAKLQKEFG-PKTGQMLYRFCRGLDDRPV 374 (504)
T ss_dssp SBGGGST-TCCHHHHHHHHHTTCCBHHHHTTSCHHHHHHHHC-HHHHHHHHHHTTTCCCCCC
T ss_pred CChhHhh-CcCHHHHHHHHHcCCCcHHHHHhccHHHHHHhhC-hhHHHHHHHHhcCCCcccc
Confidence 6899999 999999999999999 999999999999999998 4568889888888754433
No 389
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=53.59 E-value=7.1 Score=41.34 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=17.4
Q ss_pred cCCCcEEEecCCCCCchHHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~ 722 (1492)
..|+-+.+.||+|||||+..-
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 368889999999999998643
No 390
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=53.47 E-value=5.3 Score=41.61 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=22.7
Q ss_pred CCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHH
Q 043190 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l 723 (1492)
.+..+...+.. ..+..+.+.||.|||||+.+-.
T Consensus 12 ~~~~~~~~~~~--~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 12 VEKVDRQRLLD--QKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp CCHHHHHHHHT--SCCEEEEEECSTTSSHHHHHHH
T ss_pred cCHHHHHHhcC--CCCeEEEEECCCCCCHHHHHHH
Confidence 44445443322 3577899999999999987643
No 391
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=53.36 E-value=6 Score=47.63 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=17.8
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.+.++++.||+|+|||..+-
T Consensus 40 ~~~~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HTCEEEEECCSSSSHHHHHH
T ss_pred cCCeeEeecCchHHHHHHHH
Confidence 67899999999999998754
No 392
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=52.85 E-value=7.7 Score=44.62 Aligned_cols=59 Identities=8% Similarity=0.107 Sum_probs=52.9
Q ss_pred cccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhcCCchHHHHHHHhccCCceeE
Q 043190 488 HPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIRYTPGGRLVKQYLGYFPSIQL 548 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~~~~~~~~i~~~~~~~P~~~i 548 (1492)
.|+..+| +||+...++|.+.|+ |+.||++++.+.+...+| +..|..+.+.++....-.+
T Consensus 179 lpv~~l~-GiG~~~~~~L~~~GI~Ti~dL~~~~~~~L~~~fG-~~~g~~l~~~a~G~d~~~v 238 (362)
T 4f4y_A 179 LDIDEIP-GIGSVLARRLNELGIQKLRDILSKNYNELEKITG-KAKALYLLKLAQDEYNEPI 238 (362)
T ss_dssp CBSTTST-TCCSTTHHHHHHTTCCBGGGGTTSCHHHHHHHHC-HHHHHHHHHHHTTCCCCCC
T ss_pred CChhhcc-CCCHHHHHHHHHcCCChHHHHhcCCHHHHHHHhC-hHHHHHHHHHhcCCCCCcC
Confidence 5899999 999999999999999 999999999999999887 5688999999998876554
No 393
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=52.78 E-value=8.9 Score=42.70 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
...+++.||+|+|||..+-.
T Consensus 36 p~~lLl~GppGtGKT~la~a 55 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCEL 55 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35789999999999997653
No 394
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=52.61 E-value=18 Score=42.81 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=52.2
Q ss_pred cccccccccCCHHHHHHHHH--cCC-ChhHHhhC-CHHHHHHHhcCCchHHHHHHHhccCCceeE
Q 043190 488 HPLRQFDKELPAEILRKLEE--RGA-DLDRLQEM-EEKDIGALIRYTPGGRLVKQYLGYFPSIQL 548 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~--~~~-~~~~l~~~-~~~~~~~l~~~~~~~~~i~~~~~~~P~~~i 548 (1492)
.|+..|| +||+...++|.+ .|+ |+.+|+++ +.+.+...++ +..|..+.+.++....-.+
T Consensus 241 lpv~~l~-GiG~~~~~~L~~~~~GI~ti~dL~~~~~~~~L~~~fG-~~~g~~l~~~a~G~d~~~v 303 (434)
T 2aq4_A 241 FKLDDLP-GVGHSTLSRLESTFDSPHSLNDLRKRYTLDALKASVG-SKLGMKIHLALQGQDDEES 303 (434)
T ss_dssp CCGGGST-TCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHHHHHC-SSHHHHHHHHTTTCCCHHH
T ss_pred CCccccc-CcCHHHHHHHHHhcCCceEHHHHHhcCCHHHHHHHhC-HHHHHHHHHHhcCCCcccc
Confidence 6899999 999999999999 899 99999999 9999999998 5679999999988865443
No 395
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=52.53 E-value=5.2 Score=41.21 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=17.4
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+..++++|+.|||||+++-.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 356789999999999997654
No 396
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=52.51 E-value=14 Score=44.30 Aligned_cols=51 Identities=20% Similarity=0.098 Sum_probs=39.4
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHHHHHh
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDWKDRL 758 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~~~~~ 758 (1492)
.+....+.+-||||||++..-.+ +. .+..+|+|+|....|.+.+++++..+
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-~~----~~~p~lvv~~~~~~A~~l~~~l~~~~ 63 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-ER----HAGPVVLIAPDMQNALRLHDEISQFT 63 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-HH----SSSCEEEEESSHHHHHHHHHHHHHTC
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-HH----hCCCEEEEeCCHHHHHHHHHHHHhhC
Confidence 45678999999999998643322 22 25679999999999999999987643
No 397
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=52.50 E-value=5.8 Score=39.85 Aligned_cols=20 Identities=30% Similarity=0.292 Sum_probs=17.3
Q ss_pred CcEEEecCCCCCchHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~ 724 (1492)
+++++.|+.|||||+++-..
T Consensus 8 ~~i~l~G~~GsGKSTva~~L 27 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQEL 27 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 68999999999999987643
No 398
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=52.31 E-value=12 Score=45.10 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=21.4
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhc
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFN 730 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~ 730 (1492)
.+.+++|.|+||||||.+.-..+...+.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~ 193 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLY 193 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999976555554443
No 399
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=52.26 E-value=6.2 Score=41.07 Aligned_cols=21 Identities=19% Similarity=0.151 Sum_probs=17.8
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+..+++.|+.|||||+++-.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 467899999999999998753
No 400
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=52.16 E-value=5.8 Score=44.07 Aligned_cols=20 Identities=40% Similarity=0.504 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
+..++++||.|||||+.+-.
T Consensus 33 ~~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999997653
No 401
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=52.12 E-value=6 Score=41.49 Aligned_cols=19 Identities=32% Similarity=0.392 Sum_probs=16.1
Q ss_pred CCCcEEEecCCCCCchHHH
Q 043190 703 TDNNVLLGAPTGSGKTISA 721 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~ 721 (1492)
.+..+.|.||+|||||+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5668889999999999864
No 402
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=51.86 E-value=7 Score=45.16 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=14.8
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
..++|+||||||||..+.
T Consensus 3 ~~i~i~GptgsGKttla~ 20 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSI 20 (409)
T ss_dssp EEEEEEECSSSSHHHHHH
T ss_pred cEEEEECcchhhHHHHHH
Confidence 357899999999998653
No 403
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=51.85 E-value=49 Score=39.68 Aligned_cols=48 Identities=19% Similarity=0.268 Sum_probs=29.0
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc--cHHHHHHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP--LKAIVRERMNDW 754 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P--~r~La~q~~~~~ 754 (1492)
..++++|++|+|||+.+.-.+.. +.. .+.+++++.. .+..+.++...+
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~-l~~-~G~kVllVd~D~~r~aa~~qL~~~ 151 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYY-YQR-KGWKTCLICADTFRAGAFDQLKQN 151 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH-HHH-TTCCEEEEEECCSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHh-CCCeEEEEeccccchhHHHHHHHH
Confidence 36888999999999876544433 333 2556666554 455554444443
No 404
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=51.78 E-value=6.9 Score=40.57 Aligned_cols=23 Identities=22% Similarity=0.592 Sum_probs=17.5
Q ss_pred CcEEEecCCCCCchHHHHHHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHL 728 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~ 728 (1492)
+.+++.||.|+|||..+ .++.+.
T Consensus 59 n~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHH-HHHHHH
T ss_pred cEEEEECCCCCCHHHHH-HHHHHH
Confidence 36999999999999876 344443
No 405
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=51.51 E-value=6.2 Score=40.11 Aligned_cols=42 Identities=26% Similarity=0.311 Sum_probs=25.9
Q ss_pred EEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcccHHHHHHHHHHH
Q 043190 707 VLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPLKAIVRERMNDW 754 (1492)
Q Consensus 707 vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~r~La~q~~~~~ 754 (1492)
++|.|++|||||..++... .. +.+++|++.....-.+..+++
T Consensus 2 ilV~Gg~~SGKS~~A~~la----~~--~~~~~yiaT~~~~d~e~~~rI 43 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI----GD--APQVLYIATSQILDDEMAARI 43 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH----CS--CSSEEEEECCCC------CHH
T ss_pred EEEECCCCCcHHHHHHHHH----hc--CCCeEEEecCCCCCHHHHHHH
Confidence 6899999999998776432 12 457899988665433433333
No 406
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=51.44 E-value=8.8 Score=45.37 Aligned_cols=57 Identities=16% Similarity=0.173 Sum_probs=48.6
Q ss_pred CcccccCCCCHHHHHH-HHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHHHhcCCCc
Q 043190 1320 SALWMFPCMNNDLLGT-LRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPR 1376 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~-l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~~~~P~ 1376 (1492)
.|+..|+|+|+...++ |...||.|+.||+.++...+...+++..+..+.+.++-+..
T Consensus 253 lpv~~l~GiG~~~~~~lL~~lGI~TigdLa~~~~~~L~~~fG~~~g~~L~~~a~G~d~ 310 (435)
T 4ecq_A 253 MPIRKIRSLGGKLGASVIEILGIEYMGELTQFTESQLQSHFGEKNGSWLYAMCRGIEH 310 (435)
T ss_dssp CBGGGSTTCSSHHHHHHHHHHTCCBGGGGGGSCHHHHHHHHCHHHHHHHHHHTTTCCC
T ss_pred CCHHHhcCCCHHHHHHHHHHcCCCcHHHHhhCCHHHHHHHhCccHHHHHHHHhhCCCC
Confidence 5899999999887655 79999999999999999999999987677888887776653
No 407
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=50.68 E-value=5.1 Score=41.20 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=15.6
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
..+++.||.|||||+.+-.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4678999999999997544
No 408
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=50.60 E-value=19 Score=40.72 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=29.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE-ccc-HHHHHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI-APL-KAIVRERMNDWKDR 757 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i-~P~-r~La~q~~~~~~~~ 757 (1492)
.+..+.+.||+|||||+..-... ..+.. .++++++. .++ +.-+.++...|.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~La-g~l~~-~~g~V~l~g~D~~r~~a~eql~~~~~~ 182 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLA-NWLKN-HGFSVVIAASDTFRAGAIEQLEEHAKR 182 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHH-HHHHH-TTCCEEEEEECCSSTTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH-HHHHh-cCCEEEEEeecccccchHHHHHHHHHH
Confidence 46688999999999998543222 22222 24455444 343 33344445555443
No 409
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=50.48 E-value=6.9 Score=40.98 Aligned_cols=20 Identities=25% Similarity=0.433 Sum_probs=17.0
Q ss_pred cCCCcEEEecCCCCCchHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISA 721 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~ 721 (1492)
..|+-+.+.||+|||||+.+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 36888999999999999864
No 410
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=50.44 E-value=6.5 Score=40.95 Aligned_cols=20 Identities=25% Similarity=0.405 Sum_probs=16.7
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
...++++|+.|||||+++-.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35799999999999997654
No 411
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=50.32 E-value=6.3 Score=44.86 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=17.7
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.+.++++.||+|+|||..+-
T Consensus 45 ~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHH
T ss_pred cCCeEEEECCCCCcHHHHHH
Confidence 57899999999999998764
No 412
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=50.21 E-value=6.9 Score=41.41 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=18.0
Q ss_pred CCCcEEEecCCCCCchHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~ 724 (1492)
.+..+++.|+.|||||+++-..
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3568999999999999987543
No 413
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=50.08 E-value=6.6 Score=45.63 Aligned_cols=20 Identities=55% Similarity=0.841 Sum_probs=17.1
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
...++++.||+|+|||..+-
T Consensus 71 ~~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 35689999999999998765
No 414
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=49.82 E-value=12 Score=42.08 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=22.9
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI 740 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i 740 (1492)
.++.+.+.+|+|+|||+.+...... +.. .+++++++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~-l~~-~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY-YAE-LGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH-HHH-TTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH-HHH-CCCeEEEE
Confidence 4557888999999999865433222 222 25666655
No 415
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=49.63 E-value=7.6 Score=40.96 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=17.9
Q ss_pred CCCcEEEecCCCCCchHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~ 724 (1492)
..+.+++.||+||||++++...
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L 49 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKL 49 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5567889999999999987543
No 416
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=49.59 E-value=23 Score=40.52 Aligned_cols=51 Identities=22% Similarity=0.345 Sum_probs=28.5
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc-cc-HHHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA-PL-KAIVRERMNDWK 755 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~-P~-r~La~q~~~~~~ 755 (1492)
.+..+.+.||+|||||+..-.. ...+.. .++++++.. ++ +.-+.++...|.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~L-ag~l~~-~~G~V~l~g~D~~r~~a~eql~~~~ 208 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKL-AHRLKN-EGTKVLMAAGDTFRAAASDQLEIWA 208 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHH-HHHHHH-TTCCEEEECCCCSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHH-Hhhccc-cCCEEEEecccccccchhHHHHHHH
Confidence 4567889999999999864332 222222 256666553 33 333333344443
No 417
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=49.56 E-value=6.8 Score=39.65 Aligned_cols=19 Identities=32% Similarity=0.354 Sum_probs=16.1
Q ss_pred cEEEecCCCCCchHHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~ 724 (1492)
++++.||.|||||+++-..
T Consensus 6 ~i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp CEEEECCTTSCHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHH
Confidence 6899999999999987543
No 418
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=49.38 E-value=29 Score=30.11 Aligned_cols=55 Identities=22% Similarity=0.284 Sum_probs=40.0
Q ss_pred CCcccccccccCCHHHHHHHHHcCCC-----hhHHhhC--CHHHHHHHh----c-CCchHHHHHHHhc
Q 043190 486 HQHPLRQFDKELPAEILRKLEERGAD-----LDRLQEM--EEKDIGALI----R-YTPGGRLVKQYLG 541 (1492)
Q Consensus 486 ~~~~L~Ql~~~i~~~~~~~l~~~~~~-----~~~l~~~--~~~~~~~l~----~-~~~~~~~i~~~~~ 541 (1492)
..-++..+| +||+...++|+++|++ +.++.-+ +.+...+.+ + |.+++.+..+.++
T Consensus 16 geK~V~evp-GIG~~~~~~L~~~Gf~kAy~lLGqFL~l~kd~~~F~~WLk~~~gan~kq~~dc~~cl~ 82 (89)
T 1ci4_A 16 GEKPVGSLA-GIGEVLGKKLEERGFDKAYVVLGQFLVLKKDEDLFREWLKDTCGANAKQSRDCFGCLR 82 (89)
T ss_dssp TTCCGGGST-TCCHHHHHHHHHTTCCSHHHHHHHHHHTTTCHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCcccCC-CcCHHHHHHHHHcCccHHHHHHHHHHHcCCCHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence 346889999 9999999999999993 5566545 555555554 3 6677777776654
No 419
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=49.37 E-value=6.8 Score=41.84 Aligned_cols=21 Identities=33% Similarity=0.537 Sum_probs=13.7
Q ss_pred cCCCcEEEecCCCCCchHHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~ 722 (1492)
..|.-+.+.||+|||||+..-
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVAN 45 (231)
T ss_dssp ECCCEEEEECSCC----CHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 367889999999999998653
No 420
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=49.30 E-value=6.4 Score=40.53 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=16.7
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
+..+++.|++|||||+++-.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45689999999999998754
No 421
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=49.11 E-value=6.8 Score=44.33 Aligned_cols=20 Identities=40% Similarity=0.466 Sum_probs=17.0
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
...++++.||+|+|||..+-
T Consensus 37 ~~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHH
Confidence 34789999999999998764
No 422
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=49.08 E-value=64 Score=37.00 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=22.9
Q ss_pred HHHHHhhh--cCCCcEEEecCCCCCchHHHHH
Q 043190 694 TQIFHILY--HTDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 694 ~~~i~~~~--~~~~~vli~apTGsGKT~~~~l 723 (1492)
..+++..+ ..|+.+.|.||+|+|||+....
T Consensus 162 iraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 162 ARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp HHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred ceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 34555543 4689999999999999997654
No 423
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=48.95 E-value=6.7 Score=41.76 Aligned_cols=21 Identities=19% Similarity=0.164 Sum_probs=16.9
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
....+++.|++|||||+++-.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHH
Confidence 346799999999999997643
No 424
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=48.89 E-value=7.4 Score=39.70 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=16.2
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
..++++|+.|||||+++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4689999999999998754
No 425
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=48.88 E-value=7.7 Score=44.83 Aligned_cols=26 Identities=31% Similarity=0.392 Sum_probs=19.5
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhc
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFN 730 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~ 730 (1492)
++++++.||+|+|||..+.. +.+.+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~-la~~l~ 95 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMG-MAQALG 95 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHH-HHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHH-HHHHhc
Confidence 35899999999999997653 444443
No 426
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=48.71 E-value=6.8 Score=41.27 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=15.6
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
.+++.||.|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999998754
No 427
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=48.57 E-value=6.7 Score=40.56 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=17.5
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+..++++|+.|||||+++-.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 456899999999999997653
No 428
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=48.25 E-value=67 Score=34.38 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=53.2
Q ss_pred cCCCCCeeEEecChHHHHHHHHHHHHHHhcCCCCcccCCCChHHHHHHHhhcCcHHHHHHhccceEeecCCCCHHHHHHH
Q 043190 914 HSPTKPVLIFVSSRRQTRLTALDLIQFAASDETPRQFLGMPEEDLQMVLSQVTDQNLRQTLQFGIGLHHAGLNDKDRSLV 993 (1492)
Q Consensus 914 ~~~~~~~LIF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 993 (1492)
...+.++||.+|++.-+..++..+.+.. ...+..+..++|+.+..++...
T Consensus 108 ~~~~~~~lil~Ptr~L~~q~~~~~~~~~------------------------------~~~~~~~~~~~g~~~~~~~~~~ 157 (249)
T 3ber_A 108 TPQRLFALVLTPTRELAFQISEQFEALG------------------------------SSIGVQSAVIVGGIDSMSQSLA 157 (249)
T ss_dssp SCCSSCEEEECSSHHHHHHHHHHHHHHH------------------------------GGGTCCEEEECTTSCHHHHHHH
T ss_pred CCCCceEEEEeCCHHHHHHHHHHHHHHh------------------------------ccCCeeEEEEECCCChHHHHHH
Confidence 3445679999999998888887775432 2235678889999876654433
Q ss_pred HHHHhcCCceEEEeccc-----cc--cccCCCCcEEEEe
Q 043190 994 EELFANNKIQVLVCTST-----LA--WGVNLPAHLVIIK 1025 (1492)
Q Consensus 994 ~~~f~~g~~~vLvaT~~-----l~--~Gvdip~~~~VI~ 1025 (1492)
. .+..+|+|+|.- +. .++++..+.+||.
T Consensus 158 ~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 158 L----AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp H----HTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred h----cCCCCEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 2 245789999962 22 3567778877774
No 429
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=48.13 E-value=8 Score=40.16 Aligned_cols=20 Identities=40% Similarity=0.469 Sum_probs=16.8
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
+..++++|+.|||||+++-.
T Consensus 20 ~~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999998654
No 430
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=47.92 E-value=12 Score=42.05 Aligned_cols=19 Identities=42% Similarity=0.510 Sum_probs=16.3
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
.++++.||+|+|||..+-.
T Consensus 48 ~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp EEEEEESCSSSSHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHH
Confidence 4799999999999987653
No 431
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=47.85 E-value=7.6 Score=39.08 Aligned_cols=19 Identities=16% Similarity=0.284 Sum_probs=16.1
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
..+++.|+.|||||+++-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999998754
No 432
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=47.52 E-value=6.8 Score=41.05 Aligned_cols=20 Identities=30% Similarity=0.233 Sum_probs=16.2
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.+..+.|.||+|||||+.+-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHH
Confidence 45578899999999998653
No 433
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=47.48 E-value=9.4 Score=39.91 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=16.3
Q ss_pred cEEEecCCCCCchHHHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~i 725 (1492)
.+++.||+||||++++....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999999876533
No 434
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=47.43 E-value=7.4 Score=39.53 Aligned_cols=20 Identities=30% Similarity=0.358 Sum_probs=16.9
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.+..+++.|+.|||||+++-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46788999999999999764
No 435
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=47.42 E-value=25 Score=30.57 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=43.2
Q ss_pred cccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhccC
Q 043190 488 HPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGYF 543 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~~ 543 (1492)
.|+-+|. ++......|.+.|| |+.+|...+.+++.++-+ .++-.++|.+.+..+
T Consensus 12 ~~I~~L~--LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~~L~~~ 67 (86)
T 3k4g_A 12 RPVDDLE--LTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXDVLASR 67 (86)
T ss_dssp SBGGGGC--CCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHTT
T ss_pred CcHHHhC--CCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHHHHHHc
Confidence 4566676 78888889999999 999999999999888744 466677777777665
No 436
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=47.38 E-value=7.8 Score=44.37 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=17.0
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
...++++.||+|+|||..+-
T Consensus 44 ~~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GGCCEEEECCGGGCTTHHHH
T ss_pred CCceEEEECCCCccHHHHHH
Confidence 34679999999999998764
No 437
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=47.18 E-value=7.9 Score=42.03 Aligned_cols=19 Identities=47% Similarity=0.583 Sum_probs=15.7
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+++.||+|+|||+.+-
T Consensus 49 ~~g~ll~G~~G~GKTtl~~ 67 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLAR 67 (254)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3459999999999998654
No 438
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=47.07 E-value=22 Score=42.36 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=48.9
Q ss_pred CCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHHHhcCCCceEE
Q 043190 1319 DSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFPRIQV 1379 (1492)
Q Consensus 1319 ~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~~~~P~i~i 1379 (1492)
..|+..|||+|+...++|...||+|+.||...+ ..+...++...+..+.+.+..+..-.+
T Consensus 281 ~lpv~~l~GiG~~~~~~L~~lGI~T~gdL~~~~-~~L~~~fG~~~~~~l~~~a~G~d~~~v 340 (459)
T 1t94_A 281 DLPIRKVSGIGKVTEKMLKALGIITCTELYQQR-ALLSLLFSETSWHYFLHISLGLGSTHL 340 (459)
T ss_dssp TCBGGGCTTSCHHHHHHHHHTTCCBHHHHHHTH-HHHHHHSCHHHHHHHHHHHTTCCCSCC
T ss_pred cCCHHhcCCcCHHHHHHHHHcCCCcHHHHHhhH-HHHHHHhChHhHHHHHHHHcCCCCccc
Confidence 358999999999999999999999999999985 667777887666777777776654433
No 439
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.82 E-value=10 Score=43.36 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.7
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
.++++.||+|+|||..+-
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 569999999999998764
No 440
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=46.73 E-value=4.1 Score=42.80 Aligned_cols=53 Identities=8% Similarity=0.057 Sum_probs=0.0
Q ss_pred CcccccccccCCHHHHHHHHHcCCChhHHhhCCHHHHHHHhc-CCchHHHHHHHhc
Q 043190 487 QHPLRQFDKELPAEILRKLEERGADLDRLQEMEEKDIGALIR-YTPGGRLVKQYLG 541 (1492)
Q Consensus 487 ~~~L~Ql~~~i~~~~~~~l~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~ 541 (1492)
.++|..+| +||+..+++|.++--|++.+.+++.+++.++ + ++..++.|.++++
T Consensus 172 ~s~L~~Ip-GIG~k~ak~Ll~~FGSl~~i~~As~eeL~~V-GIG~~~A~~I~~~f~ 225 (226)
T 3c65_A 172 HSVLDDIP-GVGEKRKKALLNYFGSVKKMKEATVEELQRA-NIPRAVAEKIYEKLH 225 (226)
T ss_dssp --------------------------------------------------------
T ss_pred cccccccC-CCCHHHHHHHHHHhCCHHHHHhCCHHHHHHc-CCCHHHHHHHHHHhh
Confidence 37889999 9999999999876449999999999999999 7 6777887777654
No 441
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=46.49 E-value=10 Score=37.18 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.0
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
.-.+|.||+|||||.+..
T Consensus 24 g~~~I~G~NGsGKStil~ 41 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLD 41 (149)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 456899999999998754
No 442
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=46.42 E-value=8 Score=40.95 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=17.5
Q ss_pred CCcEEEecCCCCCchHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~ 724 (1492)
...+++.||.|||||+++-..
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~L 25 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELI 25 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 467999999999999987543
No 443
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=46.42 E-value=9.4 Score=40.14 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=15.6
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
++++.||.|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999998754
No 444
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=46.22 E-value=5.1 Score=43.96 Aligned_cols=19 Identities=47% Similarity=0.728 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4679999999999999764
No 445
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=45.96 E-value=9.5 Score=40.75 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=18.1
Q ss_pred CCCcEEEecCCCCCchHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~ 724 (1492)
...++++.|+.|||||+++-..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 4468999999999999987543
No 446
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=45.80 E-value=13 Score=38.94 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=23.6
Q ss_pred CCHHHHHHHHhhhcCCCcEEEecCCCCCchHHHHH
Q 043190 689 FNPIQTQIFHILYHTDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 689 l~~~Q~~~i~~~~~~~~~vli~apTGsGKT~~~~l 723 (1492)
.++.++.... ...+..+++.|+.|||||+.+-.
T Consensus 12 ~~~~~r~~~~--~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 12 LTRSERTELR--NQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp CCHHHHHHHH--TSSCEEEEEECSTTSSHHHHHHH
T ss_pred cCHHHhhccc--CCCCCEEEEECCCCCCHHHHHHH
Confidence 3455555533 23677899999999999997653
No 447
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=45.73 E-value=8.5 Score=39.18 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=13.9
Q ss_pred cEEEecCCCCCchHHH
Q 043190 706 NVLLGAPTGSGKTISA 721 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~ 721 (1492)
.+.+.||.|||||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999864
No 448
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=45.57 E-value=4.4 Score=42.58 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=0.0
Q ss_pred CCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh-hCCchHHHHHHHhc
Q 043190 1319 DSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV-IGNFPVSRLHQDLQ 1372 (1492)
Q Consensus 1319 ~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~-l~~~~~~~i~~~~~ 1372 (1492)
.++|..+||+|+.+++.|.++ +.|++.+.+++.+++..+ +++...+.|.++++
T Consensus 172 ~s~L~~IpGIG~k~ak~Ll~~-FGSl~~i~~As~eeL~~VGIG~~~A~~I~~~f~ 225 (226)
T 3c65_A 172 HSVLDDIPGVGEKRKKALLNY-FGSVKKMKEATVEELQRANIPRAVAEKIYEKLH 225 (226)
T ss_dssp -------------------------------------------------------
T ss_pred cccccccCCCCHHHHHHHHHH-hCCHHHHHhCCHHHHHHcCCCHHHHHHHHHHhh
Confidence 478899999999999999764 678899999998888887 66666677766543
No 449
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=45.55 E-value=8.5 Score=38.47 Aligned_cols=18 Identities=28% Similarity=0.254 Sum_probs=15.4
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
.+++.|+.|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 578999999999998654
No 450
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=45.52 E-value=8.1 Score=46.21 Aligned_cols=19 Identities=47% Similarity=0.655 Sum_probs=16.6
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
++++++.||+|+|||..+-
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4689999999999999764
No 451
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=45.25 E-value=7.9 Score=39.38 Aligned_cols=20 Identities=30% Similarity=0.451 Sum_probs=13.0
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
+..+++.|+.|||||+++-.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CCEEEEECCC----CHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46789999999999998754
No 452
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=45.23 E-value=8.7 Score=40.74 Aligned_cols=20 Identities=20% Similarity=0.419 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
+..+.+.||+|||||+++-+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35788999999999997653
No 453
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=45.10 E-value=9.1 Score=41.30 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=17.2
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+..+++.||.|||||+.+-.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 356899999999999987543
No 454
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=44.93 E-value=7.8 Score=39.75 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=15.4
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
.+++.|+.|||||+++-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999997654
No 455
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=44.66 E-value=9.1 Score=41.54 Aligned_cols=22 Identities=18% Similarity=0.345 Sum_probs=18.0
Q ss_pred cCCCcEEEecCCCCCchHHHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l 723 (1492)
..+..+.|.||.|||||+++-+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3567899999999999997643
No 456
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=44.60 E-value=17 Score=39.54 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=27.6
Q ss_pred hhcCCCCCCHHHHHH-HHhhhcCC----CcEEEecCCCCCchHHHH
Q 043190 682 ALYNFSHFNPIQTQI-FHILYHTD----NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 682 ~~~~~~~l~~~Q~~~-i~~~~~~~----~~vli~apTGsGKT~~~~ 722 (1492)
.++.+...+|++-.. +...++.. +.+++.||.|+|||..+.
T Consensus 77 ~~l~~qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 77 KILELNGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 344555567887553 44555332 259999999999999765
No 457
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=44.57 E-value=19 Score=36.18 Aligned_cols=25 Identities=24% Similarity=-0.012 Sum_probs=17.4
Q ss_pred CcEEEecCCCCCchHHHHHHHHHHhc
Q 043190 705 NNVLLGAPTGSGKTISAELAMLHLFN 730 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l~il~~l~ 730 (1492)
..+.++|+.|||||+.... ++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~-L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEK-WVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHH-HHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH-HHHhhH
Confidence 3578899999999986543 344443
No 458
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=44.35 E-value=8.7 Score=40.15 Aligned_cols=21 Identities=29% Similarity=0.332 Sum_probs=17.3
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+..+++.|+.|||||+++-.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHH
Confidence 356789999999999998654
No 459
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=44.23 E-value=10 Score=39.54 Aligned_cols=20 Identities=30% Similarity=0.220 Sum_probs=16.6
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.+..+.|.|++|||||+.+-
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678899999999998654
No 460
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=44.02 E-value=9.1 Score=39.78 Aligned_cols=18 Identities=22% Similarity=0.377 Sum_probs=15.5
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
..++++|+.|||||+++-
T Consensus 16 ~~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468999999999999764
No 461
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=44.00 E-value=13 Score=41.93 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=28.7
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcC
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDI 1350 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~ 1350 (1492)
..|+++||+|+..++++++.||+|++||...
T Consensus 98 ~~l~~V~GiGpk~a~~l~~~Gi~tledL~~a 128 (335)
T 2fmp_A 98 NFLTRVSGIGPSAARKFVDEGIKTLEDLRKN 128 (335)
T ss_dssp HHHTTSTTCCHHHHHHHHHTTCCSHHHHHTC
T ss_pred HHHhCCCCCCHHHHHHHHHcCCCCHHHHHHh
Confidence 4589999999999999999999999999985
No 462
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=43.90 E-value=9.5 Score=39.87 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=18.2
Q ss_pred CCCcEEEecCCCCCchHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~ 724 (1492)
.+..++++|+.|||||+++-..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L 30 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLL 30 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHH
Confidence 4678999999999999987543
No 463
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=43.74 E-value=9.2 Score=39.63 Aligned_cols=17 Identities=18% Similarity=0.366 Sum_probs=14.7
Q ss_pred cEEEecCCCCCchHHHH
Q 043190 706 NVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~ 722 (1492)
.+++.|+.|||||+.+-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 57899999999999764
No 464
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=43.63 E-value=10 Score=40.60 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=16.8
Q ss_pred cCCCcEEEecCCCCCchHH
Q 043190 702 HTDNNVLLGAPTGSGKTIS 720 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~ 720 (1492)
..|+.+.+.||.|||||+.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3688999999999999984
No 465
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=43.36 E-value=8.7 Score=39.40 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=16.0
Q ss_pred CcEEEecCCCCCchHHHHH
Q 043190 705 NNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~l 723 (1492)
..++++|+.|||||+++-.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4689999999999997654
No 466
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=43.33 E-value=9.8 Score=39.85 Aligned_cols=21 Identities=14% Similarity=0.221 Sum_probs=18.0
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
.+..++++|+.|||||+++-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 567899999999999998754
No 467
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=43.23 E-value=8.7 Score=40.40 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=15.9
Q ss_pred cEEEecCCCCCchHHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~ 724 (1492)
++++.|+.|||||+++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFI 20 (214)
T ss_dssp EEEEEESTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999987543
No 468
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=43.17 E-value=10 Score=40.22 Aligned_cols=42 Identities=21% Similarity=0.106 Sum_probs=26.7
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhcc----CCCceEEEEccc
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNT----QSDMKVVYIAPL 743 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~----~~~~~~l~i~P~ 743 (1492)
..|.-+.+.||+|||||+.+...+-..... .....++++...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 467889999999999998765433222211 014567777654
No 469
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=43.13 E-value=9.2 Score=41.73 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=16.7
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
...++++|+.|||||+.+-.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHH
Confidence 45789999999999997654
No 470
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=43.08 E-value=28 Score=38.68 Aligned_cols=51 Identities=18% Similarity=0.239 Sum_probs=29.4
Q ss_pred CCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEc--ccHHHHHHHHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIA--PLKAIVRERMNDWKD 756 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~--P~r~La~q~~~~~~~ 756 (1492)
+..+.+.+++|+|||+.+....... .. .+++++++. |.+..+.++...+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~-~~-~g~~v~l~~~D~~r~~a~~ql~~~~~ 150 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY-KK-KGFKVGLVGADVYRPAALEQLQQLGQ 150 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH-HH-TTCCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HH-CCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 4467788999999998655433222 22 255555543 345555554544443
No 471
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=42.87 E-value=11 Score=43.34 Aligned_cols=20 Identities=25% Similarity=0.361 Sum_probs=16.2
Q ss_pred cEEEecCCCCCchHHHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELAM 725 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~i 725 (1492)
-++|+||||||||+.+..-.
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 67799999999999875433
No 472
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=42.56 E-value=12 Score=38.08 Aligned_cols=17 Identities=24% Similarity=0.300 Sum_probs=14.8
Q ss_pred cEEEecCCCCCchHHHH
Q 043190 706 NVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~ 722 (1492)
-.+|.||+|||||+...
T Consensus 28 ~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGD 44 (182)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred cEEEECCCCCCHHHHHH
Confidence 67899999999998754
No 473
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=42.47 E-value=13 Score=38.48 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=17.4
Q ss_pred cEEEecCCCCCchHHHHHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELAMLH 727 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~il~ 727 (1492)
-.+++|+.|||||+.+..-+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5689999999999987554444
No 474
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=42.41 E-value=32 Score=40.93 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=28.9
Q ss_pred CCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEE-ccc-HHHHHHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYI-APL-KAIVRERMNDW 754 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i-~P~-r~La~q~~~~~ 754 (1492)
.+..+.+.||+|||||+..-. +...+.. .++++++. ..+ +..+.++...|
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~-LAgll~~-~~G~V~l~g~D~~r~aa~eQL~~~ 343 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGK-LARQFEQ-QGKSVMLAAGDTFRAAAVEQLQVW 343 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHH-HHHHHHH-TTCCEEEECCCTTCHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHH-HHHHhhh-cCCeEEEecCcccchhhHHHHHHH
Confidence 456788999999999986433 2222222 35677665 333 33333334444
No 475
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=42.13 E-value=13 Score=40.06 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=17.8
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
+..+++.|+.|||||+++-.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 88999999999999998654
No 476
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=42.03 E-value=10 Score=40.03 Aligned_cols=21 Identities=33% Similarity=0.523 Sum_probs=17.2
Q ss_pred CCcEEEecCCCCCchHHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l~ 724 (1492)
+..+++.|+.|||||+++-..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~L 25 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFI 25 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 457899999999999987543
No 477
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=42.00 E-value=18 Score=50.73 Aligned_cols=40 Identities=18% Similarity=0.118 Sum_probs=33.5
Q ss_pred cCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEccc
Q 043190 702 HTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAPL 743 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P~ 743 (1492)
..++++++++|+|+|||+.+...+.+.... +.+++|+.=.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~--Ge~~~Fit~e 1118 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAE 1118 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEcc
Confidence 467899999999999999998888887765 7888888643
No 478
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=41.99 E-value=26 Score=42.18 Aligned_cols=62 Identities=16% Similarity=0.065 Sum_probs=46.8
Q ss_pred HHhhcccCCCCcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhhhCCchHHHHHHHhcCCC
Q 043190 1310 VMQGLWFEQDSALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTVIGNFPVSRLHQDLQRFP 1375 (1492)
Q Consensus 1310 i~q~~w~~~~~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~l~~~~~~~i~~~~~~~P 1375 (1492)
+..-+| ..|+..+||||+...++|...||.|+.||...+ ..+...++......+.+.+..+.
T Consensus 331 v~~fL~---~LPV~kl~GIG~~t~~~L~~lGI~TigDL~~~~-~~L~~~fG~~~~~~l~~~a~Gid 392 (517)
T 3pzp_A 331 VMDFIK---DLPIRKVSGIGKVTEKMLKALGIITCTELYQQR-ALLSLLFSETSWHYFLHISLGLG 392 (517)
T ss_dssp HHHHHT---TCBGGGSTTCCHHHHHHHHHTTCCBHHHHHHHH-HHHHHHSCHHHHHHHHHHHTTCC
T ss_pred HHHHHh---cCChhhhccccHHHHHHHHHhCCCcHHHHHhhH-HHHHHHhChHHHHHHHHHHcCCC
Confidence 344555 368999999999999999999999999999874 56666677655555555555443
No 479
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=41.91 E-value=8.2 Score=41.93 Aligned_cols=20 Identities=35% Similarity=0.596 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCchHHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~l 723 (1492)
+..++++|+.|||||+.+-.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45789999999999997643
No 480
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=41.30 E-value=13 Score=40.10 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=18.1
Q ss_pred CCCcEEEecCCCCCchHHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l~ 724 (1492)
....+++.||.|||||+++-..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L 49 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNL 49 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4568999999999999987543
No 481
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=41.23 E-value=11 Score=41.57 Aligned_cols=18 Identities=50% Similarity=0.628 Sum_probs=15.3
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
+.+++.||+|+|||+.+-
T Consensus 74 ~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCcChHHHHHH
Confidence 459999999999998754
No 482
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=41.20 E-value=5.6 Score=45.12 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=0.0
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHhcCCHHHHhhh
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLLDIPKENLQTV 1358 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~~~~~~~~~~~ 1358 (1492)
.++-+|||+++..+++|.++|+.|+.+++..++.++...
T Consensus 12 ~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~ 50 (324)
T 2z43_A 12 KTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVA 50 (324)
T ss_dssp ---------------------------------------
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHh
Confidence 478899999999999999999999999999987766554
No 483
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=41.20 E-value=11 Score=40.30 Aligned_cols=19 Identities=21% Similarity=0.190 Sum_probs=16.9
Q ss_pred cCCCcEEEecCCCCCchHH
Q 043190 702 HTDNNVLLGAPTGSGKTIS 720 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~ 720 (1492)
..|+.+.+.||.|||||+.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4688999999999999985
No 484
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=40.91 E-value=20 Score=37.10 Aligned_cols=20 Identities=25% Similarity=0.127 Sum_probs=16.3
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
.+..+.+.||.|||||+.+-
T Consensus 21 ~~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34578899999999998754
No 485
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=40.83 E-value=10 Score=39.38 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=14.7
Q ss_pred cEEEecCCCCCchHHHH
Q 043190 706 NVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~ 722 (1492)
.+.|.|+.|||||+++-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 57899999999999754
No 486
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=40.80 E-value=6 Score=30.89 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhhhhhhhccCccccCCCcccccCCchHHHHHHHHHHHHHHHHHHhcccccc
Q 043190 273 VKEACAWLGYTYLSIRMKLNPLAYGIGWDEVIADPSLSLKQRALVTDAARALDKAKMMRFD 333 (1492)
Q Consensus 273 ~~~~~~~~~~t~~~~r~~~~p~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~ 333 (1492)
.++.+++++.+=-+.+.......||++.+ .+..+|+.|++.|+|...
T Consensus 12 e~~lL~yIr~sGGildI~~~a~kygV~kd--------------eV~~~LrrLe~KGLI~le 58 (59)
T 2xvc_A 12 ERELLDYIVNNGGFLDIEHFSKVYGVEKQ--------------EVVKLLEALKNKGLIAVE 58 (59)
T ss_dssp HHHHHHHHHHTTSEEEHHHHHHHHCCCHH--------------HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHcCCEEeHHHHHHHhCCCHH--------------HHHHHHHHHHHCCCeecc
Confidence 34455555555445555555556777744 456899999999999753
No 487
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=40.52 E-value=11 Score=44.80 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=17.1
Q ss_pred CCCcEEEecCCCCCchHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~ 722 (1492)
..+.+++.||+|+|||+.+-
T Consensus 166 ~~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34789999999999998764
No 488
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=40.50 E-value=12 Score=44.17 Aligned_cols=19 Identities=47% Similarity=0.634 Sum_probs=16.6
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
.+++++.||+|+|||+.+-
T Consensus 50 ~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4689999999999999764
No 489
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=40.32 E-value=20 Score=30.61 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=38.6
Q ss_pred cccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhcc
Q 043190 488 HPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLGY 542 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~~ 542 (1492)
.|+-+|. ++....+.|.+.|| |+.+|...+.+++..+-+ .++-..+|.+.+..
T Consensus 16 ~~Ie~L~--LS~Ra~NcLk~agI~Tv~dL~~~se~dLlki~n~G~kSl~EI~~~L~e 70 (79)
T 3gfk_B 16 MTIEELD--LSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKAKLEE 70 (79)
T ss_dssp CBGGGSC--CBHHHHHHHHHTTCCBHHHHTTCCHHHHTTSTTCHHHHHHHHHHHHHH
T ss_pred CcHHHhC--CCHHHHHHHHHhCCCCHHHHHhCCHHHHHHcCCCCHhHHHHHHHHHHH
Confidence 3555665 77888889999999 999999999999877633 24445555555543
No 490
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=40.28 E-value=16 Score=40.59 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=24.7
Q ss_pred hcCCCcEEEecCCCCCchHHHHHHHHHHhccCCCceEEEEcc
Q 043190 701 YHTDNNVLLGAPTGSGKTISAELAMLHLFNTQSDMKVVYIAP 742 (1492)
Q Consensus 701 ~~~~~~vli~apTGsGKT~~~~l~il~~l~~~~~~~~l~i~P 742 (1492)
+..|+.+.|.||+|||||+..-+ +...+ .+.++..+|
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~l-L~gl~----~G~I~~~v~ 159 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNS-LIHFL----GGSVLSFAN 159 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHH-HHHHH----TCEEECGGG
T ss_pred ecCCCEEEEECCCCCcHHHHHHH-Hhhhc----CceEEEEec
Confidence 35788999999999999986433 33333 355554443
No 491
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=40.18 E-value=11 Score=38.51 Aligned_cols=18 Identities=33% Similarity=0.375 Sum_probs=15.2
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
.+++.|+.|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999997654
No 492
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=40.16 E-value=21 Score=41.12 Aligned_cols=29 Identities=7% Similarity=-0.055 Sum_probs=27.3
Q ss_pred CcccccCCCCHHHHHHHHhCCCCCHHHHh
Q 043190 1320 SALWMFPCMNNDLLGTLRARGISTVQQLL 1348 (1492)
Q Consensus 1320 ~~L~qlp~i~~~~~~~l~~~~i~s~~~l~ 1348 (1492)
..|+++||+|++.++++++.||+|++||.
T Consensus 121 ~~l~~I~GvGpk~a~~ly~~Gi~tledL~ 149 (381)
T 1jms_A 121 KLFTSVFGVGLKTAEKWFRMGFRTLSKIQ 149 (381)
T ss_dssp HHHHTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHccCCCCHHHHHHHHHcCCCcHHHHH
Confidence 46899999999999999999999999999
No 493
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=40.08 E-value=11 Score=41.51 Aligned_cols=18 Identities=50% Similarity=0.805 Sum_probs=15.2
Q ss_pred CcEEEecCCCCCchHHHH
Q 043190 705 NNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 705 ~~vli~apTGsGKT~~~~ 722 (1492)
+.+++.||+|+|||+.+-
T Consensus 45 ~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp SEEEEESSTTSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 459999999999998653
No 494
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=39.92 E-value=23 Score=42.39 Aligned_cols=21 Identities=48% Similarity=0.431 Sum_probs=18.0
Q ss_pred CCCcEEEecCCCCCchHHHHH
Q 043190 703 TDNNVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 703 ~~~~vli~apTGsGKT~~~~l 723 (1492)
...++++.||+|+|||.++..
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 456999999999999998754
No 495
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=39.87 E-value=12 Score=37.15 Aligned_cols=20 Identities=30% Similarity=0.325 Sum_probs=16.9
Q ss_pred cCCCcEEEecCCCCCchHHH
Q 043190 702 HTDNNVLLGAPTGSGKTISA 721 (1492)
Q Consensus 702 ~~~~~vli~apTGsGKT~~~ 721 (1492)
..|..+.+.||.|||||+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 46778899999999999853
No 496
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=39.83 E-value=48 Score=34.56 Aligned_cols=61 Identities=13% Similarity=0.256 Sum_probs=42.3
Q ss_pred CCcEEEEEechHHHHHHHHHHHHHHHhcCCccccCCCCchhhHHHHHHHhhcCchHHHHHhcccEEEEcCCCChhhHHHH
Q 043190 81 GHQAMVFVHSRKDTVKTAQKLVDLARRYEDLEVFNNDTHPQLSLIKKDVMKSRNKDLIELFGLAVGVHHAGMLRSDRGLT 160 (1492)
Q Consensus 81 ~~~~lVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~gv~~hhagl~~~~R~~v 160 (1492)
+.++||.|++|.-+.++++.+.+...... ...++..|||.+...+.
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--------------------------------~~~v~~~~g~~~~~~~~-- 127 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMP--------------------------------NVKVAVFFGGLSIKKDE-- 127 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTST--------------------------------TCCEEEESCCSCHHHHH--
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCC--------------------------------CceEEEEeCCCChHHHH--
Confidence 34899999999988888877765421100 12378889998866543
Q ss_pred HHHHhCCCccEEEecc
Q 043190 161 ERLFSEGLLKVLVCTA 176 (1492)
Q Consensus 161 e~~f~~g~i~vlvaT~ 176 (1492)
+.+.++..+|+|+|+
T Consensus 128 -~~~~~~~~~i~v~T~ 142 (220)
T 1t6n_A 128 -EVLKKNCPHIVVGTP 142 (220)
T ss_dssp -HHHHHSCCSEEEECH
T ss_pred -HHHhcCCCCEEEeCH
Confidence 345567789999996
No 497
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=39.78 E-value=6.1 Score=44.82 Aligned_cols=53 Identities=13% Similarity=0.209 Sum_probs=0.0
Q ss_pred cccccccccCCHHHHHHHHHcCC-ChhHHhhCCHHHHHHHhc-CCchHHHHHHHhc
Q 043190 488 HPLRQFDKELPAEILRKLEERGA-DLDRLQEMEEKDIGALIR-YTPGGRLVKQYLG 541 (1492)
Q Consensus 488 ~~L~Ql~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~~~~l~~-~~~~~~~i~~~~~ 541 (1492)
.++.+|| ++++..+++|.++|+ |++++...++.++..+.+ ++....++++.+.
T Consensus 12 ~~~~~l~-g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~ 66 (324)
T 2z43_A 12 KTINDLP-GISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEAR 66 (324)
T ss_dssp --------------------------------------------------------
T ss_pred ccHHHcC-CCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHH
Confidence 4788999 999999999999999 999999999999988877 6666666666553
No 498
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=39.64 E-value=16 Score=37.62 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=15.5
Q ss_pred CCcEEEecCCCCCchHHHH
Q 043190 704 DNNVLLGAPTGSGKTISAE 722 (1492)
Q Consensus 704 ~~~vli~apTGsGKT~~~~ 722 (1492)
|+.+.+.||+|+|||+..-
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 3568899999999998654
No 499
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=39.46 E-value=12 Score=38.62 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.2
Q ss_pred cEEEecCCCCCchHHHHH
Q 043190 706 NVLLGAPTGSGKTISAEL 723 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l 723 (1492)
-+++.|+.|||||+++-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 368899999999998754
No 500
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=39.42 E-value=12 Score=39.71 Aligned_cols=19 Identities=42% Similarity=0.697 Sum_probs=15.8
Q ss_pred cEEEecCCCCCchHHHHHH
Q 043190 706 NVLLGAPTGSGKTISAELA 724 (1492)
Q Consensus 706 ~vli~apTGsGKT~~~~l~ 724 (1492)
.+++.|+.|||||+++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLV 20 (223)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999987543
Done!